Update README.md

README.md

@@ -1,9 +1,11 @@
 ---
 widget:
-- text: "MNSVTVSHAPYYIVYHDDWEPVMSQLVEFYNEVASWLLRDETSPIPPKFFIQLKQMLRNKRVCVCGILPYPIDGTGVPFESPNFTKKSIKEIASSISRLTGVIDYKGYNLNIIDGVIPWNYYLSCKLGETKSHAIYWDKISKLLLQHITKHVSVLYCLGKTDFSNIRAKLESPVTTIVGYHPAARDRQFEKDRSFEIINELLELDNKVPINWAQGFIY"
+- text: "MEPLDDLDLLLLEEDSGAEAVPRMEILQKKADAFFAETVLSRGVDNRYLVLAVETKLNERGAEEKHLLITVSQEGEQEVLCILRNGWSSVPVEPGDIIHIEGDCTSEPWIVDDDFGYFILSPDMLISGTSVASSIRCLRRAVLSETFRVSDTATRQMLIGTILHEVFQKAISESFAPEKLQELALQTLREVRHLKEMYRLNLSQDEVRCEVEEYLPSFSKWADEFMHKGTKAEFPQMHLSLPSDSSDRSSPCNIEVVKSLDIEESIWSPRFGLKGKIDVTVGVKIHRDCKTKYKIMPLELKTGKESNSIEHRGQVILYTLLSQERREDPEAGWLLYLKTGQMYPVPANHLDKRELLKLRNQLAFSLLHRVSRAAAGEEARLLALPQIIEEEKTCKYCSQMGNCALYSRAVEQVHDTSIPEGMRSKIQEGTQHLTRAHLKYFSLWCLMLTLESQSKDTKKSHQSIWLTPASKLEESGNCIGSLVRTEPVKRVCDGHYLHNFQRKNGPMPATNLMAGDRIILSGEERKLFALSKGYVKRIDTAAVTCLLDRNLSTLPETTLFRLDREEKHGDINTPLGNLSKLMENTDSSKRLRELIIDFKEPQFIAYLSSVLPHDAKDTVANILKGLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICALVRILSACGFSVLLTSYTHSAVDNILLKLAKFKIGFLRLGQSHKVHPDIQKFTEEEMCRLRSIASLAHLEELYNSHPVVATTCMGISHPMFSRKTFDFCIVDEASQISQPICLGPLFFSRRFVLVGDHKQLPPLVLNREARALGMSESLFKRLERNESAVVQLTIQYRMNRKIMSLSNKLTYEGKLECGSDRVANAVITLPNLKDVRLEFYADYSDNPWLAGVFEPDNPVCFLNTDKVPAPEQIENGGVSNVTEARLIVFLTSTFIKAGCSPSDIGIIAPYRQQLRTITDLLARSSVGMVEVNTVDKYQGRDKSLILVSFVRSNEDGTLGELLKDWRRLNVAITRAKHKLILLGSVSSLKRFPPLEKLFDHLNAEQLISNLPSREHESLYHILGDCQRD"
   example_title: "Protein Sequence 1"
-- text: "MNSVTVSHAPYTIAYHDDWEPVMSQLVEFYNEAASWLLRDETSPIPSKFNIQLKQPLRNKRVCVFGIDPYPKDGTGVPFESPNFTKKSIKEIASSISRLMGVIDYEGYNLNIIDGVIPWNYYLSCKLGETKSHAIYWDKISKLLLQHITKHVSVLYCLGKTDFSNIRAKLESPVTTIVGYHPSARDRQFEKDRSFEIINVLLELDNKVPLNWAQGFIY"
+- text: "MNSVTVSHAPYYIVYHDDWEPVMSQLVEFYNEVASWLLRDETSPIPPKFFIQLKQMLRNKRVCVCGILPYPIDGTGVPFESPNFTKKSIKEIASSISRLTGVIDYKGYNLNIIDGVIPWNYYLSCKLGETKSHAIYWDKISKLLLQHITKHVSVLYCLGKTDFSNIRAKLESPVTTIVGYHPAARDRQFEKDRSFEIINELLELDNKVPINWAQGFIY"
   example_title: "Protein Sequence 2"
+- text: "MNSVTVSHAPYTIAYHDDWEPVMSQLVEFYNEAASWLLRDETSPIPSKFNIQLKQPLRNKRVCVFGIDPYPKDGTGVPFESPNFTKKSIKEIASSISRLMGVIDYEGYNLNIIDGVIPWNYYLSCKLGETKSHAIYWDKISKLLLQHITKHVSVLYCLGKTDFSNIRAKLESPVTTIVGYHPSARDRQFEKDRSFEIINVLLELDNKVPLNWAQGFIY"
+  example_title: "Protein Sequence 3"
 license: mit
 datasets:
 - AmelieSchreiber/general_binding_sites
@@ -26,7 +28,12 @@ tags:
 
 This model is trained to predict general binding sites of proteins using on the sequence. This is a finetuned version of 
 `esm2_t6_8M_UR50D`, trained on [this dataset](https://huggingface.co/datasets/AmelieSchreiber/general_binding_sites). The data is 
-not filtered by family, and thus the model may be overfit to some degree.  
+not filtered by family, and thus the model may be overfit to some degree. In the Hugging Face Inference API widget to the right 
+there are three protein sequence examples. The first is a DNA binding protein, the second and third were obtained using [EvoProtGrad](https://github.com/Amelie-Schreiber/sampling_protein_language_models/blob/main/EvoProtGrad_copy.ipynb)
+a Markov Chain Monte Carlo method of (in silico) directed evolution of proteins based on a form of Gibbs sampling. The mutatant-type 
+protein sequences in theory should have similar binding sites to the wild-type protein sequence, but perhaps with higher binding affinity. 
+Testing this out on the model, we see the two proteins indeed have the same binding sites, which validates to some degree that the model 
+has learned to predict binding sites well (and that EvoProtGrad works as intended). 
 
 ## Training