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LICENSE.txt
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README.md
DELETED
@@ -1,68 +0,0 @@
|
|
1 |
-
---
|
2 |
-
language:
|
3 |
-
- en
|
4 |
-
- ar
|
5 |
-
metrics:
|
6 |
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- accuracy
|
7 |
-
pipeline_tag: text-generation
|
8 |
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tags:
|
9 |
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- medical
|
10 |
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license: cc-by-nc-sa-4.0
|
11 |
-
---
|
12 |
-
|
13 |
-
## Model Card for BiMediX-Bilingual
|
14 |
-
|
15 |
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### Model Details
|
16 |
-
- **Name:** BiMediX
|
17 |
-
- **Version:** 1.0
|
18 |
-
- **Type:** Bilingual Medical Mixture of Experts Large Language Model (LLM)
|
19 |
-
- **Languages:** English, Arabic
|
20 |
-
- **Model Architecture:** [Mixtral-8x7B-Instruct-v0.1](https://huggingface.co/mistralai/Mixtral-8x7B-Instruct-v0.1)
|
21 |
-
- **Training Data:** BiMed1.3M, a bilingual dataset with diverse medical interactions.
|
22 |
-
|
23 |
-
### Intended Use
|
24 |
-
- **Primary Use:** Medical interactions in both English and Arabic.
|
25 |
-
- **Capabilities:** MCQA, closed QA and chats.
|
26 |
-
|
27 |
-
## Getting Started
|
28 |
-
|
29 |
-
```python
|
30 |
-
from transformers import AutoModelForCausalLM, AutoTokenizer
|
31 |
-
|
32 |
-
model_id = "BiMediX/BiMediX-Bi"
|
33 |
-
|
34 |
-
tokenizer = AutoTokenizer.from_pretrained(model_id)
|
35 |
-
model = AutoModelForCausalLM.from_pretrained(model_id)
|
36 |
-
|
37 |
-
text = "Hello BiMediX! I've been experiencing increased tiredness in the past week."
|
38 |
-
inputs = tokenizer(text, return_tensors="pt")
|
39 |
-
|
40 |
-
outputs = model.generate(**inputs, max_new_tokens=500)
|
41 |
-
print(tokenizer.decode(outputs[0], skip_special_tokens=True))
|
42 |
-
```
|
43 |
-
|
44 |
-
### Training Procedure
|
45 |
-
- **Dataset:** BiMed1.3M, 632 million healthcare specialized tokens.
|
46 |
-
- **QLoRA Adaptation:** Implements a low-rank adaptation technique, incorporating learnable low-rank adapter weights into the experts and the routing network. This results in training about 4% of the original parameters.
|
47 |
-
- **Training Resources:** The model underwent training on approximately 632 million tokens from the Arabic-English corpus, including 288 million tokens exclusively for English.
|
48 |
-
|
49 |
-
### Model Performance
|
50 |
-
- **Benchmarks:** Outperforms the baseline model and Jais-30B in medical evaluations.
|
51 |
-
|
52 |
-
| **Model** | **CKG** | **CBio** | **CMed** | **MedGen** | **ProMed** | **Ana** | **MedMCQA** | **MedQA** | **PubmedQA** | **AVG** |
|
53 |
-
|-----------------------------------|------------|-----------|-----------|-------------|-------------|---------|-------------|-----------|--------------|---------|
|
54 |
-
| Jais-30B | 57.4 | 55.2 | 46.2 | 55.0 | 46.0 | 48.9 | 40.2 | 31.0 | 75.5 | 50.6 |
|
55 |
-
| Mixtral-8x7B| 59.1 | 57.6 | 52.6 | 59.5 | 53.3 | 54.4 | 43.2 | 40.6 | 74.7 | 55.0 |
|
56 |
-
| **BiMediX (Bilingual)** | **70.6** | **72.2** | **59.3** | **74.0** | **64.2** | **59.6**| **55.8** | **54.0** | **78.6** | **65.4**|
|
57 |
-
|
58 |
-
### Safety and Ethical Considerations
|
59 |
-
- **Potential issues**: hallucinations, toxicity, stereotypes.
|
60 |
-
- **Usage:** Research purposes only.
|
61 |
-
|
62 |
-
### Accessibility
|
63 |
-
- **Availability:** [BiMediX GitHub Repository](https://github.com/mbzuai-oryx/BiMediX).
|
64 |
-
- arxiv.org/abs/2402.13253
|
65 |
-
|
66 |
-
### Authors
|
67 |
-
Sara Pieri, Sahal Shaji Mullappilly, Fahad Shahbaz Khan, Rao Muhammad Anwer Salman Khan, Timothy Baldwin, Hisham Cholakkal
|
68 |
-
**Mohamed Bin Zayed University of Artificial Intelligence (MBZUAI)**
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config.json
DELETED
@@ -1,30 +0,0 @@
|
|
1 |
-
{
|
2 |
-
"_name_or_path": "BiMediX_ar_en",
|
3 |
-
"architectures": [
|
4 |
-
"MixtralModel"
|
5 |
-
],
|
6 |
-
"attention_dropout": 0.0,
|
7 |
-
"bos_token_id": 1,
|
8 |
-
"eos_token_id": 2,
|
9 |
-
"hidden_act": "silu",
|
10 |
-
"hidden_size": 4096,
|
11 |
-
"initializer_range": 0.02,
|
12 |
-
"intermediate_size": 14336,
|
13 |
-
"max_position_embeddings": 32768,
|
14 |
-
"model_type": "mixtral",
|
15 |
-
"num_attention_heads": 32,
|
16 |
-
"num_experts_per_tok": 2,
|
17 |
-
"num_hidden_layers": 32,
|
18 |
-
"num_key_value_heads": 8,
|
19 |
-
"num_local_experts": 8,
|
20 |
-
"output_router_logits": true,
|
21 |
-
"rms_norm_eps": 1e-05,
|
22 |
-
"rope_theta": 1000000.0,
|
23 |
-
"router_aux_loss_coef": 0.02,
|
24 |
-
"sliding_window": null,
|
25 |
-
"tie_word_embeddings": false,
|
26 |
-
"torch_dtype": "float32",
|
27 |
-
"transformers_version": "4.36.2",
|
28 |
-
"use_cache": false,
|
29 |
-
"vocab_size": 32000
|
30 |
-
}
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|
special_tokens_map.json
DELETED
@@ -1,30 +0,0 @@
|
|
1 |
-
{
|
2 |
-
"bos_token": {
|
3 |
-
"content": "<s>",
|
4 |
-
"lstrip": false,
|
5 |
-
"normalized": false,
|
6 |
-
"rstrip": false,
|
7 |
-
"single_word": false
|
8 |
-
},
|
9 |
-
"eos_token": {
|
10 |
-
"content": "</s>",
|
11 |
-
"lstrip": false,
|
12 |
-
"normalized": false,
|
13 |
-
"rstrip": false,
|
14 |
-
"single_word": false
|
15 |
-
},
|
16 |
-
"pad_token": {
|
17 |
-
"content": "</s>",
|
18 |
-
"lstrip": false,
|
19 |
-
"normalized": false,
|
20 |
-
"rstrip": false,
|
21 |
-
"single_word": false
|
22 |
-
},
|
23 |
-
"unk_token": {
|
24 |
-
"content": "<unk>",
|
25 |
-
"lstrip": false,
|
26 |
-
"normalized": false,
|
27 |
-
"rstrip": false,
|
28 |
-
"single_word": false
|
29 |
-
}
|
30 |
-
}
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|
tokenizer.json
DELETED
The diff for this file is too large to render.
See raw diff
|
|
tokenizer.model
DELETED
@@ -1,3 +0,0 @@
|
|
1 |
-
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:dadfd56d766715c61d2ef780a525ab43b8e6da4de6865bda3d95fdef5e134055
|
3 |
-
size 493443
|
|
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|
|
tokenizer_config.json
DELETED
@@ -1,45 +0,0 @@
|
|
1 |
-
{
|
2 |
-
"add_bos_token": true,
|
3 |
-
"add_eos_token": false,
|
4 |
-
"added_tokens_decoder": {
|
5 |
-
"0": {
|
6 |
-
"content": "<unk>",
|
7 |
-
"lstrip": false,
|
8 |
-
"normalized": false,
|
9 |
-
"rstrip": false,
|
10 |
-
"single_word": false,
|
11 |
-
"special": true
|
12 |
-
},
|
13 |
-
"1": {
|
14 |
-
"content": "<s>",
|
15 |
-
"lstrip": false,
|
16 |
-
"normalized": false,
|
17 |
-
"rstrip": false,
|
18 |
-
"single_word": false,
|
19 |
-
"special": true
|
20 |
-
},
|
21 |
-
"2": {
|
22 |
-
"content": "</s>",
|
23 |
-
"lstrip": false,
|
24 |
-
"normalized": false,
|
25 |
-
"rstrip": false,
|
26 |
-
"single_word": false,
|
27 |
-
"special": true
|
28 |
-
}
|
29 |
-
},
|
30 |
-
"additional_special_tokens": [],
|
31 |
-
"bos_token": "<s>",
|
32 |
-
"chat_template": "{{ bos_token }}{% for message in messages %}{% if (message['role'] == 'user') != (loop.index0 % 2 == 0) %}{{ raise_exception('Conversation roles must alternate user/assistant/user/assistant/...') }}{% endif %}{% if message['role'] == 'user' %}{{ '[INST] ' + message['content'] + ' [/INST]' }}{% elif message['role'] == 'assistant' %}{{ message['content'] + eos_token}}{% else %}{{ raise_exception('Only user and assistant roles are supported!') }}{% endif %}{% endfor %}",
|
33 |
-
"clean_up_tokenization_spaces": false,
|
34 |
-
"eos_token": "</s>",
|
35 |
-
"legacy": true,
|
36 |
-
"model_max_length": 1000000000000000019884624838656,
|
37 |
-
"pad_token": "</s>",
|
38 |
-
"sp_model_kwargs": {},
|
39 |
-
"spaces_between_special_tokens": false,
|
40 |
-
"tokenizer_class": "LlamaTokenizer",
|
41 |
-
"trust_remote_code": true,
|
42 |
-
"unk_token": "<unk>",
|
43 |
-
"use_default_system_prompt": false,
|
44 |
-
"use_fast": true
|
45 |
-
}
|
|
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