Initial upload of files

README.md

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+# segmentation-model-v3_1_3_spines_bc
+
+### Performance Metrics
+
+| Class    |   Precision |   Precision_std |   Recall |   Recall_std |   Mean_IoU |   Mean_IoU_std |
+|:---------|------------:|----------------:|---------:|-------------:|-----------:|---------------:|
+| Junction |       58.4  |           24.4  |    41.46 |        26.47 |       0.32 |           0.19 |
+| process  |       89.19 |            6.13 |    90.39 |         3.86 |       0.59 |           0.08 |
+| soma     |       86.59 |           30.33 |    75.56 |        32.97 |       0.83 |           0.23 |
+| spine    |       34.17 |           11.99 |    39.31 |        13.12 |       0.24 |           0.16 |
+
+
+### Performance Metrics
+
+| Bio object                          |               gt |               pr | pr/gt   |
+|:------------------------------------|-----------------:|-----------------:|:--------|
+| Total_area_of_neuronal_process_um^2 |      1.03571e+06 |      1.45047e+06 | 140.05% |
+| Total_Length_of_neuronal_process_um |  81753.7         |  80088.4         | 97.96%  |
+| Total_Area_of_soma_um^2             | 170835           | 139919           | 81.90%  |
+| Number_of_soma_count                |     50           |     34           | 68.00%  |
+| Number_of_spine_count               |    783           |    432           | 55.17%  |
+| junctions_count                     |    521           |    280           | 53.74%  |
+| Total_area_of_spine_um^2            |  41147           |  17780           | 43.21%  |
+
+
+### Plots
+
+![boxplot_soma.png](./plots/boxplot_soma.png)
+![boxplot_spine.png](./plots/boxplot_spine.png)
+![boxplot_Junction.png](./plots/boxplot_Junction.png)
+![boxplot_process.png](./plots/boxplot_process.png)

bio_objects_summary.csv

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+Bio object,gt,pr,pr/gt
+Total_area_of_neuronal_process_um^2,1035710.00,1450474.00,140.05%
+Total_Length_of_neuronal_process_um,81753.71,80088.44,97.96%
+Total_Area_of_soma_um^2,170835.00,139919.00,81.90%
+Number_of_soma_count,50.00,34.00,68.00%
+Number_of_spine_count,783.00,432.00,55.17%
+junctions_count,521.00,280.00,53.74%
+Total_area_of_spine_um^2,41147.00,17780.00,43.21%

class_metrics_raw.csv

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+image_name,Junction_Precision,Junction_Recall,Junction_Mean_IoU,process_Mean_IoU,process_Recall,process_Precision,soma_Precision,soma_Recall,soma_Mean_IoU,spine_Precision,spine_Recall,spine_Mean_IoU
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class_metrics_summary.csv

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+Class,Precision,Precision_std,Recall,Recall_std,Mean_IoU,Mean_IoU_std
+Junction,58.4,24.4,41.46,26.47,0.32,0.19
+process,89.19,6.13,90.39,3.86,0.59,0.08
+soma,86.59,30.33,75.56,32.97,0.83,0.23
+spine,34.17,11.99,39.31,13.12,0.24,0.16

gt_bio_objects.csv

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pr_bio_objects.csv

@@ -0,0 +1,31 @@
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