bert-base-ner / config.json
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{
"_name_or_path": "bert-base-cased",
"architectures": [
"BertForTokenClassification"
],
"attention_probs_dropout_prob": 0.1,
"classifier_dropout": null,
"gradient_checkpointing": false,
"hidden_act": "gelu",
"hidden_dropout_prob": 0.1,
"hidden_size": 768,
"id2label": {
"0": "O",
"1": "B-BIOMARKER_ACTIONABLE_DRUG",
"2": "I-BIOMARKER_ACTIONABLE_DRUG",
"3": "B-BIOMARKER_CANDIDATE_DRUG",
"4": "I-BIOMARKER_CANDIDATE_DRUG",
"5": "B-BIOMARKER_EFFECT",
"6": "I-BIOMARKER_EFFECT",
"7": "B-BIOMARKER_MUTATION",
"8": "I-BIOMARKER_MUTATION",
"9": "B-CHROMOSOME",
"10": "I-CHROMOSOME",
"11": "B-COPY_NUMBER",
"12": "I-COPY_NUMBER",
"13": "B-FUSION_GENE",
"14": "I-FUSION_GENE",
"15": "B-FUSION_BREAKPOINT",
"16": "I-FUSION_BREAKPOINT",
"17": "B-FUSION_TRANSCRIPT",
"18": "I-FUSION_TRANSCRIPT",
"19": "B-FUSION_VARIANT",
"20": "I-FUSION_VARIANT",
"21": "B-GENE",
"22": "I-GENE",
"23": "B-MSI_RESULT",
"24": "I-MSI_RESULT",
"25": "B-NEG_BIOMARKER",
"26": "I-NEG_BIOMARKER",
"27": "B-POS_BIOMARKER",
"28": "I-POS_BIOMARKER",
"29": "B-REPORT_DATE",
"30": "I-REPORT_DATE",
"31": "B-REPORT_DIAGNOSIS",
"32": "I-REPORT_DIAGNOSIS",
"33": "B-REPORT_ID",
"34": "I-REPORT_ID",
"35": "B-REPORT_PATIENT_ID",
"36": "I-REPORT_PATIENT_ID",
"37": "B-REPORT_PATIENT_NAME",
"38": "I-REPORT_PATIENT_NAME",
"39": "B-REPORT_PHYSICIAN",
"40": "I-REPORT_PHYSICIAN",
"41": "B-REPORT_TEST_ASSAY",
"42": "I-REPORT_TEST_ASSAY",
"43": "B-TMB_RESULT",
"44": "I-TMB_RESULT",
"45": "B-VARIANT_ACCESSION",
"46": "I-VARIANT_ACCESSION",
"47": "B-VARIANT_ALLELE_AMPLIFICATION",
"48": "I-VARIANT_ALLELE_AMPLIFICATION",
"49": "B-VARIANT_ALLELE_FRACTION",
"50": "I-VARIANT_ALLELE_FRACTION",
"51": "B-VARIANT_ALLELE_FREQUENCY",
"52": "I-VARIANT_ALLELE_FREQUENCY",
"53": "B-VARIANT_AMINO_ACID_CHANGE",
"54": "I-VARIANT_AMINO_ACID_CHANGE",
"55": "B-VARIANT_COSMIC",
"56": "I-VARIANT_COSMIC",
"57": "B-VARIANT_COVERAGE",
"58": "I-VARIANT_COVERAGE",
"59": "B-VARIANT_EXON",
"60": "I-VARIANT_EXON",
"61": "B-VARIANT_FORM",
"62": "I-VARIANT_FORM",
"63": "B-VARIANT_HGVS",
"64": "I-VARIANT_HGVS"
},
"initializer_range": 0.02,
"intermediate_size": 3072,
"label2id": {
"B-BIOMARKER_ACTIONABLE_DRUG": 1,
"B-BIOMARKER_CANDIDATE_DRUG": 3,
"B-BIOMARKER_EFFECT": 5,
"B-BIOMARKER_MUTATION": 7,
"B-CHROMOSOME": 9,
"B-COPY_NUMBER": 11,
"B-FUSION_BREAKPOINT": 15,
"B-FUSION_GENE": 13,
"B-FUSION_TRANSCRIPT": 17,
"B-FUSION_VARIANT": 19,
"B-GENE": 21,
"B-MSI_RESULT": 23,
"B-NEG_BIOMARKER": 25,
"B-POS_BIOMARKER": 27,
"B-REPORT_DATE": 29,
"B-REPORT_DIAGNOSIS": 31,
"B-REPORT_ID": 33,
"B-REPORT_PATIENT_ID": 35,
"B-REPORT_PATIENT_NAME": 37,
"B-REPORT_PHYSICIAN": 39,
"B-REPORT_TEST_ASSAY": 41,
"B-TMB_RESULT": 43,
"B-VARIANT_ACCESSION": 45,
"B-VARIANT_ALLELE_AMPLIFICATION": 47,
"B-VARIANT_ALLELE_FRACTION": 49,
"B-VARIANT_ALLELE_FREQUENCY": 51,
"B-VARIANT_AMINO_ACID_CHANGE": 53,
"B-VARIANT_COSMIC": 55,
"B-VARIANT_COVERAGE": 57,
"B-VARIANT_EXON": 59,
"B-VARIANT_FORM": 61,
"B-VARIANT_HGVS": 63,
"I-BIOMARKER_ACTIONABLE_DRUG": 2,
"I-BIOMARKER_CANDIDATE_DRUG": 4,
"I-BIOMARKER_EFFECT": 6,
"I-BIOMARKER_MUTATION": 8,
"I-CHROMOSOME": 10,
"I-COPY_NUMBER": 12,
"I-FUSION_BREAKPOINT": 16,
"I-FUSION_GENE": 14,
"I-FUSION_TRANSCRIPT": 18,
"I-FUSION_VARIANT": 20,
"I-GENE": 22,
"I-MSI_RESULT": 24,
"I-NEG_BIOMARKER": 26,
"I-POS_BIOMARKER": 28,
"I-REPORT_DATE": 30,
"I-REPORT_DIAGNOSIS": 32,
"I-REPORT_ID": 34,
"I-REPORT_PATIENT_ID": 36,
"I-REPORT_PATIENT_NAME": 38,
"I-REPORT_PHYSICIAN": 40,
"I-REPORT_TEST_ASSAY": 42,
"I-TMB_RESULT": 44,
"I-VARIANT_ACCESSION": 46,
"I-VARIANT_ALLELE_AMPLIFICATION": 48,
"I-VARIANT_ALLELE_FRACTION": 50,
"I-VARIANT_ALLELE_FREQUENCY": 52,
"I-VARIANT_AMINO_ACID_CHANGE": 54,
"I-VARIANT_COSMIC": 56,
"I-VARIANT_COVERAGE": 58,
"I-VARIANT_EXON": 60,
"I-VARIANT_FORM": 62,
"I-VARIANT_HGVS": 64,
"O": 0
},
"layer_norm_eps": 1e-12,
"max_position_embeddings": 512,
"model_type": "bert",
"num_attention_heads": 12,
"num_hidden_layers": 12,
"pad_token_id": 0,
"position_embedding_type": "absolute",
"transformers_version": "4.32.1",
"type_vocab_size": 2,
"use_cache": true,
"vocab_size": 28996
}