Upload 6 files
Browse filesInitial upload of model
- .gitattributes +1 -0
- best_model.skops +3 -0
- labels.csv +11 -0
- metadata.json +1 -0
- model_accuracies.csv +2 -0
- model_info.json +158 -0
- training_data.csv +11 -0
.gitattributes
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@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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best_model.skops filter=lfs diff=lfs merge=lfs -text
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best_model.skops
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version https://git-lfs.github.com/spec/v1
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oid sha256:995a938546e30df25444c5e00c907c79ecf871d2ff97c54ffcee1ecf1fc47712
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size 2870628
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labels.csv
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,0
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0,good
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1,good
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2,good
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3,good
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4,good
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5,bad
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6,bad
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7,bad
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8,bad
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9,bad
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metadata.json
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{"subject_species": "Generated data", "brain_area": "N/A", "probe": {"name": "tetrodes"}}
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model_accuracies.csv
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,classifier name,imputation_strategy,scaling_strategy,accuracy,precision,recall,model_id,best_params
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0,RandomForestClassifier,median,StandardScaler(),1.0000,1.0000,1.0000,0,"OrderedDict([('class_weight', 'balanced_subsample'), ('criterion', 'gini'), ('min_samples_leaf', 2), ('min_samples_split', 2), ('n_estimators', 125)])"
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model_info.json
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{
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"metric_params": {
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"analyzer_0": {
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"quality_metric_params": {
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"metric_names": [
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"amplitude_cutoff",
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"amplitude_cv",
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"amplitude_median",
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"d_prime",
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"drift",
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"firing_range",
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"firing_rate",
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"isi_violation",
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"isolation_distance",
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"l_ratio",
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"nearest_neighbor",
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"num_spikes",
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"presence_ratio",
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"rp_violation",
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"sd_ratio",
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"silhouette",
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"sliding_rp_violation",
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"snr",
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"synchrony"
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],
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"peak_sign": null,
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"seed": null,
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"qm_params": {
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"presence_ratio": {
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"bin_duration_s": 60,
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"mean_fr_ratio_thresh": 0.0
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},
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"snr": {
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"peak_sign": "neg",
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"peak_mode": "extremum"
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},
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"isi_violation": {
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"isi_threshold_ms": 1.5,
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"min_isi_ms": 0
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},
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"rp_violation": {
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"refractory_period_ms": 1.0,
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"censored_period_ms": 0.0
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},
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"sliding_rp_violation": {
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"min_spikes": 0,
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"bin_size_ms": 0.25,
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"window_size_s": 1,
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"exclude_ref_period_below_ms": 0.5,
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"max_ref_period_ms": 10,
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"contamination_values": null
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},
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"synchrony": {
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"synchrony_sizes": [
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2,
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4,
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8
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]
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},
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"firing_range": {
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"bin_size_s": 5,
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"percentiles": [
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5,
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95
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]
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},
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"amplitude_cv": {
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"average_num_spikes_per_bin": 50,
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"percentiles": [
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5,
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95
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],
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"min_num_bins": 10,
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"amplitude_extension": "spike_amplitudes"
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},
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"amplitude_cutoff": {
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"peak_sign": "neg",
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"num_histogram_bins": 100,
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"histogram_smoothing_value": 3,
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"amplitudes_bins_min_ratio": 5
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},
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"amplitude_median": {
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"peak_sign": "neg"
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},
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"drift": {
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"interval_s": 60,
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"min_spikes_per_interval": 100,
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"direction": "y",
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"min_num_bins": 2
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},
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"nearest_neighbor": {
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"max_spikes": 10000,
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"n_neighbors": 5
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},
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"nn_isolation": {
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"max_spikes": 10000,
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"min_spikes": 10,
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"min_fr": 0.0,
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"n_neighbors": 4,
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"n_components": 10,
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"radius_um": 100,
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"peak_sign": "neg"
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},
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"nn_noise_overlap": {
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"max_spikes": 10000,
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"min_spikes": 10,
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"min_fr": 0.0,
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"n_neighbors": 4,
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"n_components": 10,
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"radius_um": 100,
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"peak_sign": "neg"
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},
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"silhouette": {
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"method": [
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"simplified"
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]
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}
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},
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"skip_pc_metrics": false
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},
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"template_metric_params": {
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"metric_names": [
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"half_width",
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"num_negative_peaks",
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"num_positive_peaks",
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"peak_to_valley",
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"peak_trough_ratio",
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"recovery_slope",
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"repolarization_slope"
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],
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"sparsity": null,
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"peak_sign": "neg",
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"upsampling_factor": 10,
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"metrics_kwargs": {
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"recovery_window_ms": 0.7,
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"peak_relative_threshold": 0.2,
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"peak_width_ms": 0.1,
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"depth_direction": "y",
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"min_channels_for_velocity": 5,
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"min_r2_velocity": 0.5,
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"exp_peak_function": "ptp",
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"min_r2_exp_decay": 0.5,
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"spread_threshold": 0.2,
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"spread_smooth_um": 20,
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"column_range": null
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}
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}
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}
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},
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"requirements": {
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"spikeinterface": "0.101.1",
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"scikit-learn": "1.4.0"
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},
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"label_conversion": {
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"1": "good",
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"0": "bad"
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}
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}
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training_data.csv
ADDED
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,amplitude_cutoff,amplitude_cv_median,amplitude_cv_range,amplitude_median,drift_ptp,drift_std,drift_mad,firing_range,firing_rate,isi_violations_ratio,isi_violations_count,num_spikes,presence_ratio,rp_contamination,rp_violations,sd_ratio,sliding_rp_violation,snr,sync_spike_2,sync_spike_4,sync_spike_8,d_prime,isolation_distance,l_ratio,silhouette,nn_hit_rate,nn_miss_rate,half_width,num_negative_peaks,num_positive_peaks,peak_to_valley,peak_trough_ratio,recovery_slope,repolarization_slope
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0,,,,-105.55292,,,,1.2599999999999998,14.1,0.0,0.0,141.0,,0.0,0.0,1.4275525575895887,0.13,19.94376038512596,0.014184397163120567,0.0,0.0,14.32472020529736,754.333174814516,3.498809474378825e-05,0.6047805009662675,0.9148936170212766,0.005304101838755304,0.000272,1,1,0.0007,-0.2603113109282029,-34669.6033764812,289954.4413997247
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1,,,,-33.25789,,,,0.360000000000003,16.4,0.0,0.0,164.0,,0.0,0.0,1.062721238972397,0.1,6.385192930548802,0.012195121951219513,0.0,0.0,5.550849214038404,93.81342566277144,0.025624156435374426,0.3462939490773019,0.8429878048780488,0.01689432063263839,0.000268,1,0,0.000688,-0.1654153151935468,-6686.657520361004,85404.06725637885
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2,,,,-39.264847,,,,1.4399999999999995,14.6,0.0,0.0,146.0,,0.0,0.0,0.7823625169831282,0.13,7.510754986318674,0.0136986301369863,0.0,0.0,5.174324857350859,70.47972600619985,0.0458272822421763,0.33222679845555547,0.7825342465753424,0.01738821859474805,0.00022,1,0,0.000496,-0.18190749934219932,-9349.811468026372,119624.20539646724
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3,,,,-150.3613,,,,3.4200000000000017,14.1,0.0,0.0,141.0,,0.0,0.0,1.2420705833860484,0.14,28.31617873073055,0.0070921985815602835,0.0,0.0,20.091786877470362,1368.6948507775646,0.0,0.6278975906072741,0.9539007092198581,0.0031824611032531826,0.000232,1,1,0.000684,-0.28473928913839414,-53956.39289013097,395887.74012533476
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4,,,,-32.15467,,,,3.7799999999999976,15.3,0.0,0.0,153.0,,0.0,0.0,1.0693804845727417,0.095,6.303967028588283,0.013071895424836602,0.0,0.0,3.3481204356228353,50.179048330926186,0.0616623888316366,0.29690613159496176,0.8529411764705882,0.015335235378031383,0.000256,1,1,0.000564,-0.32801763391376826,-15064.650919764095,124739.97152224768
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5,,,,0.3231091,,,,0.1800000000000015,15.3,0.0,0.0,153.0,,0.0,0.0,1.7210704419869174,0.11,0.6333596333132606,0.0,0.0,0.0,1.346984042510883,6.256928146523261,3.2203025514597847,-0.05202430885993671,0.1781045751633987,0.09432952924393723,0.001476,2,2,0.000764,-0.6075884125832761,-2393.295952661818,6342.494741897144
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6,,,,0.30091238,,,,3.7799999999999994,17.5,0.0,0.0,175.0,,0.0,0.0,1.592399979097494,0.09,0.6365438885454862,0.017142857142857144,0.0,0.0,1.3638968138893786,7.5953560548625445,2.608304536554279,-0.007394267230338126,0.18857142857142858,0.10036231884057971,0.001644,2,3,0.001112,-0.37536001353663767,-3332.269394156418,5741.393888220467
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7,,,,0.26962733,,,,1.259999999999998,16.5,0.0,0.0,165.0,,0.0,0.0,1.752057118043708,0.1,0.5895421305481752,0.0,0.0,0.0,1.448931119036185,7.868476893669308,2.723481862466978,0.0006757284458100525,0.18484848484848485,0.09820143884892087,0.00236,3,2,0.00042,-0.38427887346555645,-1368.9036206312949,11815.0067873371
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8,,,,-0.6511212,,,,5.399999999999997,17.4,0.0,0.0,174.0,,0.0,0.0,1.2713837562553023,0.085,0.400033710760959,0.0,0.0,0.0,1.4423993470283136,9.103022751770219,2.415844781652313,0.01335317653129366,0.1853448275862069,0.10445329471397538,0.001744,2,3,0.00012,0.05718339921922215,,
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9,,,,-0.5781461,,,,1.9800000000000022,14.3,0.0,0.0,143.0,,0.0,0.0,1.0529652237146974,0.145,0.4181589882853068,0.013986013986013986,0.0,0.0,1.1875053894770542,6.951082925089799,3.455085804157728,0.0022930177606275298,0.1381118881118881,0.09313031161473088,0.001852,2,3,0.000816,-0.5768069143478995,-2028.997636162123,5328.396822277372
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