Update README.md

README.md

@@ -1,7 +1,6 @@
 ---
 license: apache-2.0
 language:
-- zh
 - en
 base_model:
 - meta-llama/Llama-3.1-8B-Instruct
@@ -45,8 +44,176 @@ output = model.generate(texts, sampling_params)
 res = json.loads(output[0].outputs[0].text)
 ```
 
+## An example:
 
-## Citation [optional]
+Input:
+```python
+EHR = ["""Unit No:___
+
+Admission Date:___
+
+
+
+  Discharge Date:___
+
+Date of Birth:___
+
+
+
+ Sex:   F
+
+Service: MEDICINE
+
+Allergies:
+Sulfur / Norvasc
+
+Attending:___
+Addendum:
+See below
+
+Chief Complaint:
+abdominal pain
+
+Major Surgical or Invasive Procedure:
+none
+
+History of Present Illness:
+84 F with PMHx of Renovascular HTN c/b NSTEMI now s/p renal
+stents, Gout and h/o Crohn's disease who presented to the ED on
+___with RLQ pain for approx 2 days.  She denies any
+nausea/vomiting/diarrhea or constipation but has not been taking
+
+po well and felt dehydrated."""]
+```
+
+Output:
+```python
+res = [{'phrase': 'allergies',
+  'semantic_type': 'Disease, Syndrome or Pathologic Function',
+  'assertion_status': 'title',
+  'body_location': 'null',
+  'modifier': 'null',
+  'value': 'not applicable',
+  'unit': 'not applicable',
+  'purpose': 'not applicable'},
+ {'phrase': 'sulfur',
+  'semantic_type': 'Chemical or Drug',
+  'assertion_status': 'conditional',
+  'body_location': 'not applicable',
+  'modifier': 'not applicable',
+  'value': 'null',
+  'unit': 'units: null',
+  'purpose': 'null'},
+ {'phrase': 'norvasc',
+  'semantic_type': 'Chemical or Drug',
+  'assertion_status': 'conditional',
+  'body_location': 'not applicable',
+  'modifier': 'not applicable',
+  'value': 'null',
+  'unit': 'units: null',
+  'purpose': 'null'},
+ {'phrase': 'abdominal pain',
+  'semantic_type': 'Sign, Symptom, or Finding',
+  'assertion_status': 'present',
+  'body_location': 'Abdominal',
+  'modifier': 'null',
+  'value': 'not applicable',
+  'unit': 'not applicable',
+  'purpose': 'not applicable'},
+ {'phrase': 'surgical or invasive procedure',
+  'semantic_type': 'Therapeutic or Preventive Procedure',
+  'assertion_status': 'title',
+  'body_location': 'null',
+  'modifier': 'not applicable',
+  'value': 'not applicable',
+  'unit': 'not applicable',
+  'purpose': 'null'},
+ {'phrase': 'renovascular hypertension',
+  'semantic_type': 'Disease, Syndrome or Pathologic Function',
+  'assertion_status': 'present',
+  'body_location': 'renal',
+  'modifier': 'null',
+  'value': 'not applicable',
+  'unit': 'not applicable',
+  'purpose': 'not applicable'},
+ {'phrase': 'non-st elevation myocardial infarction',
+  'semantic_type': 'Disease, Syndrome or Pathologic Function',
+  'assertion_status': 'present',
+  'body_location': 'null',
+  'modifier': 'null',
+  'value': 'not applicable',
+  'unit': 'not applicable',
+  'purpose': 'not applicable'},
+ {'phrase': 'gout',
+  'semantic_type': 'Disease, Syndrome or Pathologic Function',
+  'assertion_status': 'present',
+  'body_location': 'null',
+  'modifier': 'null',
+  'value': 'not applicable',
+  'unit': 'not applicable',
+  'purpose': 'not applicable'},
+ {'phrase': "crohn ' s disease",
+  'semantic_type': 'Disease, Syndrome or Pathologic Function',
+  'assertion_status': 'present',
+  'body_location': 'not applicable',
+  'modifier': 'not applicable',
+  'value': 'not applicable',
+  'unit': 'not applicable',
+  'purpose': 'not applicable'},
+ {'phrase': 'emergency department',
+  'semantic_type': 'Therapeutic or Preventive Procedure',
+  'assertion_status': 'present',
+  'body_location': 'null',
+  'modifier': 'not applicable',
+  'value': 'not applicable',
+  'unit': 'not applicable',
+  'purpose': 'null'},
+ {'phrase': 'pain',
+  'semantic_type': 'Sign, Symptom, or Finding',
+  'assertion_status': 'present',
+  'body_location': 'right lower quadrant',
+  'modifier': 'null',
+  'value': 'not applicable',
+  'unit': 'not applicable',
+  'purpose': 'not applicable'},
+ {'phrase': 'nausea',
+  'semantic_type': 'Sign, Symptom, or Finding',
+  'assertion_status': 'absent',
+  'body_location': 'null',
+  'modifier': 'null',
+  'value': 'not applicable',
+  'unit': 'not applicable',
+  'purpose': 'not applicable'},
+ {'phrase': 'vomiting',
+  'semantic_type': 'Sign, Symptom, or Finding',
+  'assertion_status': 'absent',
+  'body_location': 'null',
+  'modifier': 'null',
+  'value': 'not applicable',
+  'unit': 'not applicable',
+  'purpose': 'not applicable'},
+ {'phrase': 'diarrhea',
+  'semantic_type': 'Sign, Symptom, or Finding',
+  'assertion_status': 'absent',
+  'body_location': 'null',
+  'modifier': 'null',
+  'value': 'not applicable',
+  'unit': 'not applicable',
+  'purpose': 'not applicable'},
+ {'phrase': 'constipation',
+  'semantic_type': 'Sign, Symptom, or Finding',
+  'assertion_status': 'absent',
+  'body_location': 'null',
+  'modifier': 'null',
+  'value': 'not applicable',
+  'unit': 'not applicable',
+  'purpose': 'not applicable'}]
+
+```
+
+
+
+## Citation
 
 If you find our paper or models helpful, please consider cite: (to be released)