yinghy2018
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README.md
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license: apache-2.0
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---
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license: apache-2.0
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language:
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- zh
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- en
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base_model:
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- Qwen/Qwen2.5-7B-Instruct
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- meta-llama/Llama-3.1-8B-Instruct
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pipeline_tag: feature-extraction
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tags:
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- structuring
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- EHR
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- medical
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- IE
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---
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# Model Card for GENIE
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## Model Details
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Model Size: 8B (English) / 7B (Chinese)
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Max Tokens: 8192
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Base model: Llama 3.1 8B (English) / Qwen 2.5 7B (Chinese)
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### Model Description
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GENIE (Generative Note Information Extraction) is an end-to-end model for structuring EHR data.
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GENIE can process an entire paragraph of clinical notes in a single pass, outputting structured information on named entities, assertion statuses, locations, other relevant modifiers, clinical values, and intended purposes.
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This end-to-end approach simplifies the structuring process, reduces errors, and enables healthcare providers to derive structured data from EHRs more efficiently, without the need for extensive manual adjustments.
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And experiments have shown that GENIE achieves high accuracy in each of the task.
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## Usage
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```python
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from vllm import LLM, SamplingParams
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PROMPT_TEMPLATE = "Human:\n{query}\n\n Assistant:"
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sampling_params = SamplingParams(temperature=temperature, max_tokens=max_new_token)
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EHR = ['xxxxx1','xxxxx2']
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texts = [PROMPT_TEMPLATE.format(query=k) for k in EHR]
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output = model.generate(texts, sampling_params)
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```
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## Citation [optional]
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If you find our paper or models helpful, please consider cite: (to be released)
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**BibTeX:**
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[More Information Needed]
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