yonghuiwu commited on
Commit
fe39ff5
·
1 Parent(s): 4fe7a5d

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +13 -0
README.md CHANGED
@@ -33,6 +33,19 @@ gatortron-large | 8.9 billion
33
 
34
  <h2>How to use</h2>
35
 
 
 
 
 
 
 
 
 
 
 
 
 
 
36
  - An NLP pacakge using GatorTronS for clinical concept extraction (Named Entity Recognition): https://github.com/uf-hobi-informatics-lab/ClinicalTransformerNER
37
  - An NLP pacakge using GatorTronS for Relation Extraction: https://github.com/uf-hobi-informatics-lab/ClinicalTransformerRelationExtraction
38
  - An NLP pacakge using GatorTronS for extraction of social determinants of health (SDoH) from clinical narratives: https://github.com/uf-hobi-informatics-lab/SDoH_SODA
 
33
 
34
  <h2>How to use</h2>
35
 
36
+ ```python
37
+ from huggingface_hub import login
38
+ from transformers import AutoModel, AutoTokenizer, AutoConfig
39
+
40
+ tokinizer= AutoTokenizer.from_pretrained('UFNLP/gatortronS')
41
+ config=AutoConfig.from_pretrained('UFNLP/gatortronS')
42
+ mymodel=AutoModel.from_pretrained('UFNLP/gatortronS')
43
+
44
+ encoded_input=tokinizer("Bone scan: Negative for distant metastasis.", return_tensors="pt")
45
+ encoded_output = mymodel(**encoded_input)
46
+ print (encoded_output)
47
+ ```
48
+
49
  - An NLP pacakge using GatorTronS for clinical concept extraction (Named Entity Recognition): https://github.com/uf-hobi-informatics-lab/ClinicalTransformerNER
50
  - An NLP pacakge using GatorTronS for Relation Extraction: https://github.com/uf-hobi-informatics-lab/ClinicalTransformerRelationExtraction
51
  - An NLP pacakge using GatorTronS for extraction of social determinants of health (SDoH) from clinical narratives: https://github.com/uf-hobi-informatics-lab/SDoH_SODA