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**CodonTransformer** is the ultimate tool for codon optimization, transforming protein sequences into optimized DNA sequences specific for your target organisms. Whether you are a researcher or a practitioner in genetic engineering, CodonTransformer provides a comprehensive suite of features to facilitate your work. By leveraging the Transformer architecture and a user-friendly Jupyter notebook, it reduces the complexity of codon optimization, saving you time and effort.
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## Use Case
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**For
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<br></br>
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After installing CodonTransformer, you can use:
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```python
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**CodonTransformer** is the ultimate tool for codon optimization, transforming protein sequences into optimized DNA sequences specific for your target organisms. Whether you are a researcher or a practitioner in genetic engineering, CodonTransformer provides a comprehensive suite of features to facilitate your work. By leveraging the Transformer architecture and a user-friendly Jupyter notebook, it reduces the complexity of codon optimization, saving you time and effort.
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## Authors
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Adibvafa Fallahpour<sup>1,2</sup>\*, Vincent Gureghian<sup>3</sup>\*, Guillaume J. Filion<sup>2</sup>, Ariel B. Lindner<sup>3</sup>, Amir Pandi<sup>3</sup>‡
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<sup>1</sup> Vector Institute for Artificial Intelligence, Toronto ON, Canada
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<sup>2</sup> University of Toronto Scarborough; Department of Biological Science; Scarborough ON, Canada
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<sup>3</sup> Université Paris Cité, INSERM U1284, Center for Research and Interdisciplinarity, F-75006 Paris, France
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\* These authors contributed equally to this work.
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‡ To whom correspondence should be addressed: **[email protected]** <br>
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## Use Case
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**For a guide on finetuning CodonTransformer, check out our [GitHub.](https://github.com/Adibvafa/CodonTransformer/tree/main?tab=readme-ov-file#finetuning-codontransformer)**
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<br>**For an interactive demo, check out our [Google Colab Notebook.](https://adibvafa.github.io/CodonTransformer/GoogleColab)**
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<br></br>
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After installing CodonTransformer, you can use:
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```python
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