Update README.md
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README.md
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@@ -8,12 +8,14 @@ State is distributed via [`uv`](https://docs.astral.sh/uv). To train models on y
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uv tool install arc-state
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```
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To
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```code
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state tx infer --model_dir <ST-Tahoe_PATH> --pert_col drugname_drugconc --adata <INPUT_ADATA>.h5ad --output <OUTPUT_DIR>
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```
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## Running from source
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```bash
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uv tool install arc-state
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```
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To generate predictions:
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```code
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state tx infer --model_dir <ST-Tahoe_PATH> --pert_col drugname_drugconc --adata <INPUT_ADATA>.h5ad --output <OUTPUT_DIR>
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```
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This will group the cells in your input AnnData by the specified `pert_col` and run inference with a pretrained ST checkpoint.
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## Running from source
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```bash
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