Add a model card to BarcodeMamba models
Browse filesAdded the link to paper, poster, GitHub repository and citation
README.md
CHANGED
@@ -1,3 +1,24 @@
|
|
1 |
-
---
|
2 |
-
license: mit
|
3 |
-
---
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
---
|
2 |
+
license: mit
|
3 |
+
---
|
4 |
+
|
5 |
+
# BarcodeMamba for Taxonomic Classification
|
6 |
+
|
7 |
+
A performant and efficient Mamba-2-based foundation model for DNA barcodes in biodiversity analysis.
|
8 |
+
|
9 |
+
- Check out our [paper](https://openreview.net/forum?id=6ohFEFTr10)
|
10 |
+
- Check out our [poster](https://neurips.cc/media/PosterPDFs/NeurIPS%202024/105938.png)
|
11 |
+
|
12 |
+
# Usage
|
13 |
+
The pretrained models can be used for both taxonomic classification on seen species (fine-tune & linear probe) and making genus-level predictions on unseen species (1-NN probe). The instructions for using our models can be found at our [GitHub repository](https://github.com/bioscan-ml/BarcodeMamba).
|
14 |
+
|
15 |
+
# Citation
|
16 |
+
|
17 |
+
If you find BarcodeMamba useful, please consider citing:
|
18 |
+
```
|
19 |
+
@inproceedings{
|
20 |
+
gao2024barcodemamba,
|
21 |
+
title={BarcodeMamba: State Space Models for Biodiversity Analysis},
|
22 |
+
author={Tiancheng Gao and Graham W.~Taylor},
|
23 |
+
booktitle={{NeurIPS} 2024 Workshop on Foundation Models for Science: Progress, Opportunities, and Challenges},
|
24 |
+
year={2024},
|