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- NeuralMD_ODE/MISATO_1000_seed_22/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_1000_seed_22/model.pth +3 -0
- NeuralMD_ODE/MISATO_1000_seed_32/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_1000_seed_32/model.pth +3 -0
- NeuralMD_ODE/MISATO_1000_seed_42/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_1000_seed_42/model.pth +3 -0
- NeuralMD_ODE/MISATO_100_seed_22/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_100_seed_22/model.pth +3 -0
- NeuralMD_ODE/MISATO_100_seed_32/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_100_seed_32/model.pth +3 -0
- NeuralMD_ODE/MISATO_100_seed_42/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_100_seed_42/model.pth +3 -0
- NeuralMD_ODE/MISATO_1KTI_seed_22/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_1KTI_seed_22/model.pth +3 -0
- NeuralMD_ODE/MISATO_1KTI_seed_32/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_1KTI_seed_32/model.pth +3 -0
- NeuralMD_ODE/MISATO_1KTI_seed_42/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_1KTI_seed_42/model.pth +3 -0
- NeuralMD_ODE/MISATO_1XP6_seed_22/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_1XP6_seed_22/model.pth +3 -0
- NeuralMD_ODE/MISATO_1XP6_seed_32/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_1XP6_seed_32/model.pth +3 -0
- NeuralMD_ODE/MISATO_1XP6_seed_42/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_1XP6_seed_42/model.pth +3 -0
- NeuralMD_ODE/MISATO_3B9S_seed_22/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_3B9S_seed_22/model.pth +3 -0
- NeuralMD_ODE/MISATO_3B9S_seed_32/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_3B9S_seed_32/model.pth +3 -0
- NeuralMD_ODE/MISATO_3B9S_seed_42/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_3B9S_seed_42/model.pth +3 -0
- NeuralMD_ODE/MISATO_3EOV_seed_22/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_3EOV_seed_22/model.pth +3 -0
- NeuralMD_ODE/MISATO_3EOV_seed_32/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_3EOV_seed_32/model.pth +3 -0
- NeuralMD_ODE/MISATO_3EOV_seed_42/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_3EOV_seed_42/model.pth +3 -0
- NeuralMD_ODE/MISATO_4G3E_seed_22/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_4G3E_seed_22/model.pth +3 -0
- NeuralMD_ODE/MISATO_4G3E_seed_32/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_4G3E_seed_32/model.pth +3 -0
- NeuralMD_ODE/MISATO_4G3E_seed_42/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_4G3E_seed_42/model.pth +3 -0
- NeuralMD_ODE/MISATO_4K6W_seed_22/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_4K6W_seed_22/model.pth +3 -0
- NeuralMD_ODE/MISATO_4K6W_seed_32/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_4K6W_seed_32/model.pth +3 -0
- NeuralMD_ODE/MISATO_4K6W_seed_42/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_4K6W_seed_42/model.pth +3 -0
- NeuralMD_ODE/MISATO_4YUR_seed_22/hyperparameter.txt +1 -0
- NeuralMD_ODE/MISATO_4YUR_seed_22/model.pth +3 -0
NeuralMD_ODE/MISATO_1000_seed_22/hyperparameter.txt
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--seed=22 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --FrameNet_num_radial=100 --num_workers=0 --epochs=100 --batch_size=8 --dataset=MISATO_1000 --NeuralMD_step_size=5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.01 --ODE_method=euler --NeuralMD_binding_model=NeuralMD_Binding01 --no_MLP_velocity --no_NeuralMD_Binding_start_with_first_frame --NeuralMD_Binding_frame_num=10 --output_model_dir=output/MISATO_1000/NeuralMD_Binding01/5_100_0.01_euler_no_NeuralMD_Binding_start_with_first_frame_10_no_MLP_velocity/1e-4_Adam_None_100_8_100_22
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NeuralMD_ODE/MISATO_1000_seed_22/model.pth
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NeuralMD_ODE/MISATO_1000_seed_32/hyperparameter.txt
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--seed=32 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --FrameNet_num_radial=100 --num_workers=0 --epochs=100 --batch_size=8 --dataset=MISATO_1000 --NeuralMD_step_size=5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.01 --ODE_method=euler --NeuralMD_binding_model=NeuralMD_Binding01 --no_MLP_velocity --no_NeuralMD_Binding_start_with_first_frame --NeuralMD_Binding_frame_num=10 --output_model_dir=output/MISATO_1000/NeuralMD_Binding01/5_100_0.01_euler_no_NeuralMD_Binding_start_with_first_frame_10_no_MLP_velocity/1e-4_Adam_None_100_8_100_32
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NeuralMD_ODE/MISATO_1000_seed_32/model.pth
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NeuralMD_ODE/MISATO_1000_seed_42/hyperparameter.txt
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--seed=42 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --FrameNet_num_radial=100 --num_workers=0 --epochs=100 --batch_size=8 --dataset=MISATO_1000 --NeuralMD_step_size=5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.01 --ODE_method=euler --NeuralMD_binding_model=NeuralMD_Binding01 --no_MLP_velocity --no_NeuralMD_Binding_start_with_first_frame --NeuralMD_Binding_frame_num=10 --output_model_dir=output/MISATO_1000/NeuralMD_Binding01/5_100_0.01_euler_no_NeuralMD_Binding_start_with_first_frame_10_no_MLP_velocity/1e-4_Adam_None_100_8_100_42
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NeuralMD_ODE/MISATO_1000_seed_42/model.pth
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NeuralMD_ODE/MISATO_100_seed_22/hyperparameter.txt
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--seed=22 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --FrameNet_num_radial=100 --num_workers=0 --epochs=100 --batch_size=8 --dataset=MISATO_100 --NeuralMD_step_size=5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0 --ODE_method=euler --NeuralMD_binding_model=NeuralMD_Binding01 --no_MLP_velocity --no_NeuralMD_Binding_start_with_first_frame --NeuralMD_Binding_frame_num=20 --output_model_dir=output/MISATO_100/NeuralMD_Binding01/5_100_0_euler_no_NeuralMD_Binding_start_with_first_frame_20_no_MLP_velocity/1e-4_Adam_None_100_8_100_22
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NeuralMD_ODE/MISATO_100_seed_22/model.pth
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NeuralMD_ODE/MISATO_100_seed_32/hyperparameter.txt
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--seed=32 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --FrameNet_num_radial=100 --num_workers=0 --epochs=100 --batch_size=8 --dataset=MISATO_100 --NeuralMD_step_size=5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0 --ODE_method=euler --NeuralMD_binding_model=NeuralMD_Binding01 --no_MLP_velocity --no_NeuralMD_Binding_start_with_first_frame --NeuralMD_Binding_frame_num=20 --output_model_dir=output/MISATO_100/NeuralMD_Binding01/5_100_0_euler_no_NeuralMD_Binding_start_with_first_frame_20_no_MLP_velocity/1e-4_Adam_None_100_8_100_32
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NeuralMD_ODE/MISATO_100_seed_32/model.pth
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NeuralMD_ODE/MISATO_100_seed_42/hyperparameter.txt
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--seed=42 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --FrameNet_num_radial=100 --num_workers=0 --epochs=100 --batch_size=8 --dataset=MISATO_100 --NeuralMD_step_size=5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0 --ODE_method=euler --NeuralMD_binding_model=NeuralMD_Binding01 --no_MLP_velocity --no_NeuralMD_Binding_start_with_first_frame --NeuralMD_Binding_frame_num=20 --output_model_dir=output/MISATO_100/NeuralMD_Binding01/5_100_0_euler_no_NeuralMD_Binding_start_with_first_frame_20_no_MLP_velocity/1e-4_Adam_None_100_8_100_42
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NeuralMD_ODE/MISATO_100_seed_42/model.pth
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NeuralMD_ODE/MISATO_1KTI_seed_22/hyperparameter.txt
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--seed=22 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --num_workers=0 --epochs=500 --batch_size=1 --dataset=MISATO --PDB_ID=1KTI --NeuralMD_step_size=0.5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.001 --ODE_method=euler --NeuralMD_window_size=1 --NeuralMD_binding_model=NeuralMD_Binding01 --use_MLP_velocity --FrameNet_num_radial=100 --output_model_dir=output/MISATO_1KTI/NeuralMD_Binding01_AR/0.5_100_0.001_euler_1_100_use_MLP_velocity/1e-4_Adam_None_500_22
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NeuralMD_ODE/MISATO_1KTI_seed_22/model.pth
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NeuralMD_ODE/MISATO_1KTI_seed_32/hyperparameter.txt
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--seed=32 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --num_workers=0 --epochs=500 --batch_size=1 --dataset=MISATO --PDB_ID=1KTI --NeuralMD_step_size=0.5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.001 --ODE_method=euler --NeuralMD_window_size=1 --NeuralMD_binding_model=NeuralMD_Binding01 --use_MLP_velocity --FrameNet_num_radial=100 --output_model_dir=output/MISATO_1KTI/NeuralMD_Binding01_AR/0.5_100_0.001_euler_1_100_use_MLP_velocity/1e-4_Adam_None_500_32
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NeuralMD_ODE/MISATO_1KTI_seed_32/model.pth
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NeuralMD_ODE/MISATO_1KTI_seed_42/hyperparameter.txt
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--seed=42 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --num_workers=0 --epochs=500 --batch_size=1 --dataset=MISATO --PDB_ID=1KTI --NeuralMD_step_size=0.5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.001 --ODE_method=euler --NeuralMD_window_size=1 --NeuralMD_binding_model=NeuralMD_Binding01 --use_MLP_velocity --FrameNet_num_radial=100 --output_model_dir=output/MISATO_1KTI/NeuralMD_Binding01_AR/0.5_100_0.001_euler_1_100_use_MLP_velocity/1e-4_Adam_None_500_42
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NeuralMD_ODE/MISATO_1KTI_seed_42/model.pth
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NeuralMD_ODE/MISATO_1XP6_seed_22/hyperparameter.txt
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--seed=22 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --num_workers=0 --epochs=500 --batch_size=1 --dataset=MISATO --PDB_ID=1XP6 --NeuralMD_step_size=0.5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.001 --ODE_method=euler --NeuralMD_window_size=1 --NeuralMD_binding_model=NeuralMD_Binding01 --use_MLP_velocity --FrameNet_num_radial=100 --output_model_dir=output/MISATO_1XP6/NeuralMD_Binding01_AR/0.5_100_0.001_euler_1_100_use_MLP_velocity/1e-4_Adam_None_500_22
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NeuralMD_ODE/MISATO_1XP6_seed_22/model.pth
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NeuralMD_ODE/MISATO_1XP6_seed_32/hyperparameter.txt
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--seed=32 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --num_workers=0 --epochs=500 --batch_size=1 --dataset=MISATO --PDB_ID=1XP6 --NeuralMD_step_size=0.5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.001 --ODE_method=euler --NeuralMD_window_size=1 --NeuralMD_binding_model=NeuralMD_Binding01 --use_MLP_velocity --FrameNet_num_radial=100 --output_model_dir=output/MISATO_1XP6/NeuralMD_Binding01_AR/0.5_100_0.001_euler_1_100_use_MLP_velocity/1e-4_Adam_None_500_32
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NeuralMD_ODE/MISATO_1XP6_seed_32/model.pth
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NeuralMD_ODE/MISATO_1XP6_seed_42/hyperparameter.txt
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--seed=42 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --num_workers=0 --epochs=500 --batch_size=1 --dataset=MISATO --PDB_ID=1XP6 --NeuralMD_step_size=0.5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.001 --ODE_method=euler --NeuralMD_window_size=1 --NeuralMD_binding_model=NeuralMD_Binding01 --use_MLP_velocity --FrameNet_num_radial=100 --output_model_dir=output/MISATO_1XP6/NeuralMD_Binding01_AR/0.5_100_0.001_euler_1_100_use_MLP_velocity/1e-4_Adam_None_500_42
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NeuralMD_ODE/MISATO_1XP6_seed_42/model.pth
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NeuralMD_ODE/MISATO_3B9S_seed_22/hyperparameter.txt
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--seed=22 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --num_workers=0 --epochs=500 --batch_size=1 --dataset=MISATO --PDB_ID=3B9S --NeuralMD_step_size=0.5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.001 --ODE_method=euler --NeuralMD_window_size=1 --NeuralMD_binding_model=NeuralMD_Binding01 --use_MLP_velocity --FrameNet_num_radial=100 --output_model_dir=output/MISATO_3B9S/NeuralMD_Binding01_AR/0.5_100_0.001_euler_1_100_use_MLP_velocity/1e-4_Adam_None_500_22
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NeuralMD_ODE/MISATO_3B9S_seed_22/model.pth
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NeuralMD_ODE/MISATO_3B9S_seed_32/hyperparameter.txt
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--seed=32 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --num_workers=0 --epochs=500 --batch_size=1 --dataset=MISATO --PDB_ID=3B9S --NeuralMD_step_size=0.5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.001 --ODE_method=euler --NeuralMD_window_size=1 --NeuralMD_binding_model=NeuralMD_Binding01 --use_MLP_velocity --FrameNet_num_radial=100 --output_model_dir=output/MISATO_3B9S/NeuralMD_Binding01_AR/0.5_100_0.001_euler_1_100_use_MLP_velocity/1e-4_Adam_None_500_32
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NeuralMD_ODE/MISATO_3B9S_seed_32/model.pth
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NeuralMD_ODE/MISATO_3B9S_seed_42/hyperparameter.txt
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--seed=42 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --num_workers=0 --epochs=500 --batch_size=1 --dataset=MISATO --PDB_ID=3B9S --NeuralMD_step_size=0.5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.001 --ODE_method=euler --NeuralMD_window_size=1 --NeuralMD_binding_model=NeuralMD_Binding01 --use_MLP_velocity --FrameNet_num_radial=100 --output_model_dir=output/MISATO_3B9S/NeuralMD_Binding01_AR/0.5_100_0.001_euler_1_100_use_MLP_velocity/1e-4_Adam_None_500_42
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NeuralMD_ODE/MISATO_3B9S_seed_42/model.pth
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NeuralMD_ODE/MISATO_3EOV_seed_22/hyperparameter.txt
ADDED
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--seed=22 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --num_workers=0 --epochs=500 --batch_size=1 --dataset=MISATO --PDB_ID=3EOV --NeuralMD_step_size=0.5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.001 --ODE_method=euler --NeuralMD_window_size=1 --NeuralMD_binding_model=NeuralMD_Binding01 --use_MLP_velocity --FrameNet_num_radial=100 --output_model_dir=output/MISATO_3EOV/NeuralMD_Binding01_AR/0.5_100_0.001_euler_1_100_use_MLP_velocity/1e-4_Adam_None_500_22
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NeuralMD_ODE/MISATO_3EOV_seed_22/model.pth
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NeuralMD_ODE/MISATO_3EOV_seed_32/hyperparameter.txt
ADDED
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--seed=32 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --num_workers=0 --epochs=500 --batch_size=1 --dataset=MISATO --PDB_ID=3EOV --NeuralMD_step_size=0.5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.001 --ODE_method=euler --NeuralMD_window_size=1 --NeuralMD_binding_model=NeuralMD_Binding01 --use_MLP_velocity --FrameNet_num_radial=100 --output_model_dir=output/MISATO_3EOV/NeuralMD_Binding01_AR/0.5_100_0.001_euler_1_100_use_MLP_velocity/1e-4_Adam_None_500_32
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NeuralMD_ODE/MISATO_3EOV_seed_32/model.pth
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NeuralMD_ODE/MISATO_3EOV_seed_42/hyperparameter.txt
ADDED
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1 |
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--seed=42 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --num_workers=0 --epochs=500 --batch_size=1 --dataset=MISATO --PDB_ID=3EOV --NeuralMD_step_size=0.5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.001 --ODE_method=euler --NeuralMD_window_size=1 --NeuralMD_binding_model=NeuralMD_Binding01 --use_MLP_velocity --FrameNet_num_radial=100 --output_model_dir=output/MISATO_3EOV/NeuralMD_Binding01_AR/0.5_100_0.001_euler_1_100_use_MLP_velocity/1e-4_Adam_None_500_42
|
NeuralMD_ODE/MISATO_3EOV_seed_42/model.pth
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NeuralMD_ODE/MISATO_4G3E_seed_22/hyperparameter.txt
ADDED
@@ -0,0 +1 @@
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1 |
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--seed=22 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --num_workers=0 --epochs=500 --batch_size=1 --dataset=MISATO --PDB_ID=4G3E --NeuralMD_step_size=0.5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.001 --ODE_method=euler --NeuralMD_window_size=1 --NeuralMD_binding_model=NeuralMD_Binding01 --use_MLP_velocity --FrameNet_num_radial=100 --output_model_dir=output/MISATO_4G3E/NeuralMD_Binding01_AR/0.5_100_0.001_euler_1_100_use_MLP_velocity/1e-4_Adam_None_500_22
|
NeuralMD_ODE/MISATO_4G3E_seed_22/model.pth
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NeuralMD_ODE/MISATO_4G3E_seed_32/hyperparameter.txt
ADDED
@@ -0,0 +1 @@
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--seed=32 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --num_workers=0 --epochs=500 --batch_size=1 --dataset=MISATO --PDB_ID=4G3E --NeuralMD_step_size=0.5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.001 --ODE_method=euler --NeuralMD_window_size=1 --NeuralMD_binding_model=NeuralMD_Binding01 --use_MLP_velocity --FrameNet_num_radial=100 --output_model_dir=output/MISATO_4G3E/NeuralMD_Binding01_AR/0.5_100_0.001_euler_1_100_use_MLP_velocity/1e-4_Adam_None_500_32
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NeuralMD_ODE/MISATO_4G3E_seed_32/model.pth
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NeuralMD_ODE/MISATO_4G3E_seed_42/hyperparameter.txt
ADDED
@@ -0,0 +1 @@
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--seed=42 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --num_workers=0 --epochs=500 --batch_size=1 --dataset=MISATO --PDB_ID=4G3E --NeuralMD_step_size=0.5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.001 --ODE_method=euler --NeuralMD_window_size=1 --NeuralMD_binding_model=NeuralMD_Binding01 --use_MLP_velocity --FrameNet_num_radial=100 --output_model_dir=output/MISATO_4G3E/NeuralMD_Binding01_AR/0.5_100_0.001_euler_1_100_use_MLP_velocity/1e-4_Adam_None_500_42
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NeuralMD_ODE/MISATO_4G3E_seed_42/model.pth
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NeuralMD_ODE/MISATO_4K6W_seed_22/hyperparameter.txt
ADDED
@@ -0,0 +1 @@
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1 |
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--seed=22 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --num_workers=0 --epochs=500 --batch_size=1 --dataset=MISATO --PDB_ID=4K6W --NeuralMD_step_size=0.5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.001 --ODE_method=euler --NeuralMD_window_size=1 --NeuralMD_binding_model=NeuralMD_Binding01 --use_MLP_velocity --FrameNet_num_radial=100 --output_model_dir=output/MISATO_4K6W/NeuralMD_Binding01_AR/0.5_100_0.001_euler_1_100_use_MLP_velocity/1e-4_Adam_None_500_22
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NeuralMD_ODE/MISATO_4K6W_seed_22/model.pth
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NeuralMD_ODE/MISATO_4K6W_seed_32/hyperparameter.txt
ADDED
@@ -0,0 +1 @@
|
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|
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--seed=32 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --num_workers=0 --epochs=500 --batch_size=1 --dataset=MISATO --PDB_ID=4K6W --NeuralMD_step_size=0.5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.001 --ODE_method=euler --NeuralMD_window_size=1 --NeuralMD_binding_model=NeuralMD_Binding01 --use_MLP_velocity --FrameNet_num_radial=100 --output_model_dir=output/MISATO_4K6W/NeuralMD_Binding01_AR/0.5_100_0.001_euler_1_100_use_MLP_velocity/1e-4_Adam_None_500_32
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NeuralMD_ODE/MISATO_4K6W_seed_32/model.pth
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NeuralMD_ODE/MISATO_4K6W_seed_42/hyperparameter.txt
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|
|
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--seed=42 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --num_workers=0 --epochs=500 --batch_size=1 --dataset=MISATO --PDB_ID=4K6W --NeuralMD_step_size=0.5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.001 --ODE_method=euler --NeuralMD_window_size=1 --NeuralMD_binding_model=NeuralMD_Binding01 --use_MLP_velocity --FrameNet_num_radial=100 --output_model_dir=output/MISATO_4K6W/NeuralMD_Binding01_AR/0.5_100_0.001_euler_1_100_use_MLP_velocity/1e-4_Adam_None_500_42
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NeuralMD_ODE/MISATO_4K6W_seed_42/model.pth
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NeuralMD_ODE/MISATO_4YUR_seed_22/hyperparameter.txt
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--seed=22 --lr=1e-4 --optimizer=Adam --lr_scheduler=None --num_workers=0 --epochs=500 --batch_size=1 --dataset=MISATO --PDB_ID=4YUR --NeuralMD_step_size=0.5 --NeuralMD_scaling=100 --NeuralMD_velocity_refined_value_coefficient=0.001 --ODE_method=euler --NeuralMD_window_size=1 --NeuralMD_binding_model=NeuralMD_Binding01 --use_MLP_velocity --FrameNet_num_radial=100 --output_model_dir=output/MISATO_4YUR/NeuralMD_Binding01_AR/0.5_100_0.001_euler_1_100_use_MLP_velocity/1e-4_Adam_None_500_22
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