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.gitattributes

@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+best_model.skops filter=lfs diff=lfs merge=lfs -text

best_model.skops

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:1892a02806cf45df74c7b7d0a3addd9ae6d94b3a9e0fc8220ac907608458c20b
+size 3313406

metadata.json

@@ -0,0 +1 @@
+{"subject_species": "Mus musculus", "brain_area": "CA1", "probe": {"manufacturer": "Neuropixels", "name": "Neuropixles 2.0"}}

model_accuracies.csv

@@ -0,0 +1,13 @@
+,classifier name,imputation_strategy,scaling_strategy,accuracy,precision,recall,model_id,best_params
+0,RandomForestClassifier,median,StandardScaler(),0.5000,0.4167,0.5000,0,"OrderedDict([('class_weight', 'balanced'), ('criterion', 'gini'), ('min_samples_leaf', 3), ('min_samples_split', 3), ('n_estimators', 143)])"
+1,RandomForestClassifier,median,MinMaxScaler(),0.5000,0.4167,0.5000,1,"OrderedDict([('class_weight', 'balanced_subsample'), ('criterion', 'gini'), ('min_samples_leaf', 2), ('min_samples_split', 4), ('n_estimators', 140)])"
+2,RandomForestClassifier,median,RobustScaler(),0.5000,0.4167,0.5000,2,"OrderedDict([('class_weight', 'balanced'), ('criterion', 'gini'), ('min_samples_leaf', 3), ('min_samples_split', 3), ('n_estimators', 143)])"
+3,RandomForestClassifier,most_frequent,StandardScaler(),0.5000,0.4167,0.5000,3,"OrderedDict([('class_weight', 'balanced'), ('criterion', 'gini'), ('min_samples_leaf', 3), ('min_samples_split', 3), ('n_estimators', 143)])"
+4,RandomForestClassifier,most_frequent,MinMaxScaler(),0.5000,0.4167,0.5000,4,"OrderedDict([('class_weight', 'balanced_subsample'), ('criterion', 'gini'), ('min_samples_leaf', 2), ('min_samples_split', 4), ('n_estimators', 140)])"
+5,RandomForestClassifier,most_frequent,RobustScaler(),0.5000,0.4167,0.5000,5,"OrderedDict([('class_weight', 'balanced'), ('criterion', 'gini'), ('min_samples_leaf', 3), ('min_samples_split', 3), ('n_estimators', 143)])"
+6,RandomForestClassifier,knn,StandardScaler(),0.5000,0.4167,0.5000,6,"OrderedDict([('class_weight', 'balanced'), ('criterion', 'gini'), ('min_samples_leaf', 3), ('min_samples_split', 3), ('n_estimators', 143)])"
+7,RandomForestClassifier,knn,MinMaxScaler(),0.5000,0.4167,0.5000,7,"OrderedDict([('class_weight', 'balanced_subsample'), ('criterion', 'gini'), ('min_samples_leaf', 2), ('min_samples_split', 4), ('n_estimators', 140)])"
+8,RandomForestClassifier,knn,RobustScaler(),0.5000,0.4167,0.5000,8,"OrderedDict([('class_weight', 'balanced'), ('criterion', 'gini'), ('min_samples_leaf', 3), ('min_samples_split', 3), ('n_estimators', 143)])"
+9,RandomForestClassifier,iterative,StandardScaler(),0.5000,0.4167,0.5000,9,"OrderedDict([('class_weight', 'balanced'), ('criterion', 'gini'), ('min_samples_leaf', 3), ('min_samples_split', 3), ('n_estimators', 143)])"
+10,RandomForestClassifier,iterative,MinMaxScaler(),0.5000,0.4167,0.5000,10,"OrderedDict([('class_weight', 'balanced_subsample'), ('criterion', 'gini'), ('min_samples_leaf', 2), ('min_samples_split', 4), ('n_estimators', 140)])"
+11,RandomForestClassifier,iterative,RobustScaler(),0.5000,0.4167,0.5000,11,"OrderedDict([('class_weight', 'balanced'), ('criterion', 'gini'), ('min_samples_leaf', 3), ('min_samples_split', 3), ('n_estimators', 143)])"

pipeline_info.json

@@ -0,0 +1,157 @@
+{
+    "metric_params": {
+        "analyzer_0": {
+            "quality_metric_params": {
+                "metric_names": [
+                    "amplitude_cutoff",
+                    "amplitude_cv",
+                    "amplitude_median",
+                    "d_prime",
+                    "drift",
+                    "firing_range",
+                    "firing_rate",
+                    "isi_violation",
+                    "isolation_distance",
+                    "l_ratio",
+                    "nearest_neighbor",
+                    "num_spikes",
+                    "presence_ratio",
+                    "rp_violation",
+                    "sd_ratio",
+                    "silhouette",
+                    "sliding_rp_violation",
+                    "snr",
+                    "synchrony"
+                ],
+                "peak_sign": null,
+                "seed": null,
+                "qm_params": {
+                    "presence_ratio": {
+                        "bin_duration_s": 60,
+                        "mean_fr_ratio_thresh": 0.0
+                    },
+                    "snr": {
+                        "peak_sign": "neg",
+                        "peak_mode": "extremum"
+                    },
+                    "isi_violation": {
+                        "isi_threshold_ms": 1.5,
+                        "min_isi_ms": 0
+                    },
+                    "rp_violation": {
+                        "refractory_period_ms": 1.0,
+                        "censored_period_ms": 0.0
+                    },
+                    "sliding_rp_violation": {
+                        "min_spikes": 0,
+                        "bin_size_ms": 0.25,
+                        "window_size_s": 1,
+                        "exclude_ref_period_below_ms": 0.5,
+                        "max_ref_period_ms": 10,
+                        "contamination_values": null
+                    },
+                    "synchrony": {
+                        "synchrony_sizes": [
+                            2,
+                            4,
+                            8
+                        ]
+                    },
+                    "firing_range": {
+                        "bin_size_s": 5,
+                        "percentiles": [
+                            5,
+                            95
+                        ]
+                    },
+                    "amplitude_cv": {
+                        "average_num_spikes_per_bin": 50,
+                        "percentiles": [
+                            5,
+                            95
+                        ],
+                        "min_num_bins": 10,
+                        "amplitude_extension": "spike_amplitudes"
+                    },
+                    "amplitude_cutoff": {
+                        "peak_sign": "neg",
+                        "num_histogram_bins": 100,
+                        "histogram_smoothing_value": 3,
+                        "amplitudes_bins_min_ratio": 5
+                    },
+                    "amplitude_median": {
+                        "peak_sign": "neg"
+                    },
+                    "drift": {
+                        "interval_s": 60,
+                        "min_spikes_per_interval": 100,
+                        "direction": "y",
+                        "min_num_bins": 2
+                    },
+                    "nearest_neighbor": {
+                        "max_spikes": 10000,
+                        "n_neighbors": 5
+                    },
+                    "nn_isolation": {
+                        "max_spikes": 10000,
+                        "min_spikes": 10,
+                        "min_fr": 0.0,
+                        "n_neighbors": 4,
+                        "n_components": 10,
+                        "radius_um": 100,
+                        "peak_sign": "neg"
+                    },
+                    "nn_noise_overlap": {
+                        "max_spikes": 10000,
+                        "min_spikes": 10,
+                        "min_fr": 0.0,
+                        "n_neighbors": 4,
+                        "n_components": 10,
+                        "radius_um": 100,
+                        "peak_sign": "neg"
+                    },
+                    "silhouette": {
+                        "method": [
+                            "simplified"
+                        ]
+                    }
+                },
+                "skip_pc_metrics": false
+            },
+            "template_metric_params": {
+                "metric_names": [
+                    "half_width",
+                    "num_negative_peaks",
+                    "num_positive_peaks",
+                    "peak_to_valley",
+                    "peak_trough_ratio",
+                    "recovery_slope",
+                    "repolarization_slope"
+                ],
+                "sparsity": null,
+                "peak_sign": "neg",
+                "upsampling_factor": 10,
+                "metrics_kwargs": {
+                    "recovery_window_ms": 0.7,
+                    "peak_relative_threshold": 0.2,
+                    "peak_width_ms": 0.1,
+                    "depth_direction": "y",
+                    "min_channels_for_velocity": 5,
+                    "min_r2_velocity": 0.5,
+                    "exp_peak_function": "ptp",
+                    "min_r2_exp_decay": 0.5,
+                    "spread_threshold": 0.2,
+                    "spread_smooth_um": 20,
+                    "column_range": null
+                }
+            }
+        }
+    },
+    "spikeinterface_info": {
+        "version": "0.101.0rc0"
+    },
+    "label_conversion": {
+        "accept": "accept",
+        "reject": "accept"
+    }
+}

training_data.csv

@@ -0,0 +1,61 @@
+,amplitude_cutoff,amplitude_cv_median,amplitude_cv_range,amplitude_median,drift_ptp,drift_std,drift_mad,firing_range,firing_rate,isi_violations_ratio,isi_violations_count,num_spikes,presence_ratio,rp_contamination,rp_violations,sd_ratio,sliding_rp_violation,snr,sync_spike_2,sync_spike_4,sync_spike_8,d_prime,isolation_distance,l_ratio,silhouette,nn_hit_rate,nn_miss_rate,half_width,num_negative_peaks,num_positive_peaks,peak_to_valley,peak_trough_ratio,recovery_slope,repolarization_slope
+0,,,,-90.25139,,,,3.959999999999999,16.2,0.0,0.0,162.0,,0.0,0.0,1.328085623766315,0.1,13.985411090615933,0.024691358024691357,0.0,0.0,3.641468718575817,26.516333795048556,0.5340679669773402,0.283852738454733,0.6296296296296297,0.013151875571820676,0.00026,1,0,0.000624,-0.1298287734845804,-18030.815296130273,226238.21698916284
+1,,,,-19.604597,,,,6.299999999999999,17.3,0.0,0.0,173.0,,0.0,0.0,0.9030494671906841,0.095,3.2765440377855977,0.011560693641618497,0.0,0.0,0.9706270984556699,3.929377953333924,7.344124909554531,0.0029792659925734375,0.3352601156069364,0.025796835588167852,0.000196,1,0,0.000444,-0.08189928252914914,-2873.091828178583,58343.187981855495
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