aryopg commited on
Commit
be6cd97
·
verified ·
1 Parent(s): 4f32d2f

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +60 -7
README.md CHANGED
@@ -191,20 +191,73 @@ BALM-Benchmark is a comprehensive benchmark suite that combines multiple seminal
191
 
192
  <!-- Provide a longer summary of what this dataset is. -->
193
 
194
- Each dataset contains:
195
- - **Column A**
196
- - **Column B**
197
- - **Column C**
198
- - **...**
199
-
200
  - **Dataset Repository:** https://huggingface.co/datasets/BALM/BALM-benchmark
201
  - **Code Repository:** https://github.com/meyresearch/BALM
202
  - **Paper:** TBA
203
  - **Language(s) (NLP):** English
204
  - **License:** CC-BY-4.0
205
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
206
 
207
- ### Dataset Sources
208
 
209
  - **BindingDB_filtered**:
210
  - **CATS**:
 
191
 
192
  <!-- Provide a longer summary of what this dataset is. -->
193
 
 
 
 
 
 
 
194
  - **Dataset Repository:** https://huggingface.co/datasets/BALM/BALM-benchmark
195
  - **Code Repository:** https://github.com/meyresearch/BALM
196
  - **Paper:** TBA
197
  - **Language(s) (NLP):** English
198
  - **License:** CC-BY-4.0
199
 
200
+ ### Dataset Columns
201
+
202
+ - **BindingDB_filtered**:
203
+ - **Index** (`string`): Index of the ligand-target pair.
204
+ - **Drug_ID** (`string`): Index of the ligand from the TDC.
205
+ - **Drug** (`string`): Ligand sequence (i.e., SMILES string).
206
+ - **Target_ID** (`string`): Index of the target protein from the TDC.
207
+ - **Target** (`string`): Protein sequence (i.e., sequence of amino acids).
208
+ - **Y** (`float32`): binding affinity value in pKd.
209
+ - **CATS**:
210
+ - **Index** (`string`): Index of the ligand-target pair.
211
+ - **Drug** (`string`): Ligand sequence (i.e., SMILES string).
212
+ - **IC50** (`float32`): binding affinity value in IC50.
213
+ - **Target** (`string`): Protein sequence (i.e., sequence of amino acids).
214
+ - **Y** (`float32`): binding affinity value in pKd.
215
+ - **HIF2A**:
216
+ - **Index** (`string`): Index of the ligand-target pair.
217
+ - **Y** (`float32`): binding affinity value in pKd.
218
+ - **Drug** (`string`): Ligand sequence (i.e., SMILES string).
219
+ - **Target** (`string`): Protein sequence (i.e., sequence of amino acids).
220
+ - **HSP90**:
221
+ - **Index** (`string`): Index of the ligand-target pair.
222
+ - **Drug** (`string`): Ligand sequence (i.e., SMILES string).
223
+ - **IC50 (nM)** (`float32`): binding affinity value in IC50.
224
+ - **Target** (`string`): Protein sequence (i.e., sequence of amino acids).
225
+ - **Y** (`float32`): binding affinity value in pKd.
226
+ - **LeakyPDB**:
227
+ - **Index** (`string`): Index of the ligand-target pair.
228
+ - **header** (`string`): TBA
229
+ - **smiles** (`string`): TBA
230
+ - **category** (`string`): TBA
231
+ - **seq** (`string`): TBA
232
+ - **resolution** (`float32`): TBA
233
+ - **date** (`string`): TBA
234
+ - **type** (`string`): TBA
235
+ - **new_split** (`string`): TBA
236
+ - **CL1** (`bool`): TBA
237
+ - **CL2** (`bool`): TBA
238
+ - **CL3** (`bool`): TBA
239
+ - **remove_for_balancing_val** (`bool`): TBA
240
+ - **kd/ki** (`string`): TBA
241
+ - **value** (`float32`): TBA
242
+ - **covalent** (`bool`): TBA
243
+ - **MCL1**:
244
+ - **Index** (`string`): Index of the ligand-target pair.
245
+ - **Y** (`float32`): binding affinity value in pKd.
246
+ - **Drug** (`string`): Ligand sequence (i.e., SMILES string).
247
+ - **Target** (`string`): Protein sequence (i.e., sequence of amino acids).
248
+ - **Mpro**:
249
+ - **Index** (`string`): Index of the ligand-target pair.
250
+ - **Y** (`float32`): binding affinity value in pKd.
251
+ - **Drug** (`string`): Ligand sequence (i.e., SMILES string).
252
+ - **Target** (`string`): Protein sequence (i.e., sequence of amino acids).
253
+ - **SYK**:
254
+ - **Index** (`string`): Index of the ligand-target pair.
255
+ - **Y** (`float32`): binding affinity value in pKd.
256
+ - **Drug** (`string`): Ligand sequence (i.e., SMILES string).
257
+ - **Target** (`string`): Protein sequence (i.e., sequence of amino acids).
258
+
259
 
260
+ ### Dataset Sources
261
 
262
  - **BindingDB_filtered**:
263
  - **CATS**: