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README.md
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license: cc-by-nc-4.0
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license: cc-by-nc-4.0
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---
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## AVIDa-SARS-CoV-2
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AVIDa-SARS-CoV-2 is a dataset featuring the antigen-variable domain of heavy chain of heavy chain antibody (VHH) interactions obtained from two alpacas immunized with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike proteins.
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AVIDa-SARS-CoV-2 includes binary labels indicating the binding or non-binding of diverse VHH sequences to 12 SARS-CoV-2 mutants, such as the Delta and Omicron variants.
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Further details on AVIDa-SARS-CoV-2 are described in our paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models.”
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## Columns
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**AVIDa-SARS-CoV-2.csv / train.csv / test.csv**
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| Column | Description |
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| --------------- | --------------------------------------------------------------------------------- |
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| VHH_sequence | Amino acid sequence of VHH |
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| Ag_label | Antigen Type |
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| label | Binary label represented by 1 for the binding pair and 0 for the non-binding pair |
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| subject_species | Species of the subject from which VHH was collected |
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| subject_name | Name of the subject from which VHH was collected |
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| subject_sex | Sex of the subject from which VHH was collected |
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**antigen_sequences.csv**
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| Column | Description |
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| ----------- | ------------------------------ |
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| Ag_label | Antigen Type |
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| Ag_sequence | Amino acid sequence of antigen |
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## Links
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- Project Page: https://avida-sars-cov-2.cognanous.com
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- Code: https://github.com/cognano/AVIDa-SARS-CoV-2
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- Paper: TBD
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## Citation
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If you use AVIDa-SARS-CoV-2 in your research, please cite the following paper.
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```bibtex
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TBD
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```
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