GRichard513 commited on
Commit
28602d6
·
1 Parent(s): aaa5f15

fix: add option to use corrected dataset

Browse files
multi_omics_transcript_expression.py CHANGED
@@ -306,8 +306,8 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
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  "transcript_expression/GTEx_v1_multiomics.csv"
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  )
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  elif self.expression_method == "read_counts":
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- raise NotImplementedError(
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- "Needs the dataset"
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  )
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  return super().split_generators(dl_manager, cache_dir_root)
 
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  "transcript_expression/GTEx_v1_multiomics.csv"
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  )
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  elif self.expression_method == "read_counts":
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+ self.df_csv_file = dl_manager.download_and_extract(
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+ "transcript_expression/GTEx_read_counts_multiomics.csv"
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  )
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  return super().split_generators(dl_manager, cache_dir_root)