Commit
·
568d105
1
Parent(s):
23d70bd
add new dataset with correct UTRs
Browse files
multi_omics_transcript_expression.py
CHANGED
@@ -338,9 +338,9 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
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"DNA": standardize_sequence(padded_sequence),
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"chromosome": re.sub("chr", "", chromosome),
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"RNA": coordinates_row["RNA"],
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-
"five_prime_utr": coordinates_row["
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"coding_sequence": coordinates_row["CDS"],
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-
"three_prime_utr": coordinates_row["
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"Protein": coordinates_row["Protein"],
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}
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key += 1
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"DNA": standardize_sequence(padded_sequence),
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"chromosome": re.sub("chr", "", chromosome),
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"RNA": coordinates_row["RNA"],
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+
"five_prime_utr": coordinates_row["5UTR"],
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"coding_sequence": coordinates_row["CDS"],
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+
"three_prime_utr": coordinates_row["3UTR"],
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"Protein": coordinates_row["Protein"],
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}
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key += 1
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