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Datasets:
InstaDeepAI
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multi_omics_transcript_expression

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6
lgonzalez1 commited on
Commit
e586f01
·
1 Parent(s): ce68d96

rm legacy dfs

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Files changed (10) hide show
  1. .gitattributes +1 -0
  2. multi_omics_transcript_expression.py +1 -1
  3. transcript_expression/GTEx_df_v1.csv +0 -3
  4. transcript_expression/GTEx_df_v1_with_utr.csv +0 -3
  5. transcript_expression/GTEx_df_v2.csv +0 -3
  6. transcript_expression/GTEx_df_v2_with_utr.csv +0 -3
  7. transcript_expression/{GTEx_final_tpm_multiomics_fix.csv → GTEx_final.csv} +0 -0
  8. transcript_expression/GTEx_final_tpm_multiomics.csv +0 -3
  9. transcript_expression/GTEx_read_counts_multiomics.csv +0 -3
  10. transcript_expression/GTEx_v1_multiomics.csv +0 -3
.gitattributes CHANGED
@@ -65,3 +65,4 @@ transcript_expression/GTEx_read_counts_multiomics.csv filter=lfs diff=lfs merge=
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  =======
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  transcript_expression/GTEx_final_tpm_multiomics_fix.csv filter=lfs diff=lfs merge=lfs -text
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  >>>>>>> Stashed changes
 
 
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  =======
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  transcript_expression/GTEx_final_tpm_multiomics_fix.csv filter=lfs diff=lfs merge=lfs -text
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  >>>>>>> Stashed changes
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+ transcript_expression/GTEx_final.csv filter=lfs diff=lfs merge=lfs -text
multi_omics_transcript_expression.py CHANGED
@@ -301,7 +301,7 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
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  self.reference_genome = Fasta(reference_genome_file, one_based_attributes=False)
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  self.df_csv_file = dl_manager.download_and_extract(
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- "transcript_expression/GTEx_final_tpm_multiomics_fix.csv"
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  )
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  self.normalization_values_csv_file = dl_manager.download_and_extract(
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  "transcript_expression/normalization_values.csv"
 
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  self.reference_genome = Fasta(reference_genome_file, one_based_attributes=False)
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  self.df_csv_file = dl_manager.download_and_extract(
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+ "transcript_expression/GTEx_final.csv"
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  )
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  self.normalization_values_csv_file = dl_manager.download_and_extract(
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  "transcript_expression/normalization_values.csv"
transcript_expression/GTEx_df_v1.csv DELETED
@@ -1,3 +0,0 @@
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- size 295410868
 
 
 
 
transcript_expression/GTEx_df_v1_with_utr.csv DELETED
@@ -1,3 +0,0 @@
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- size 497490412
 
 
 
 
transcript_expression/GTEx_df_v2.csv DELETED
@@ -1,3 +0,0 @@
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transcript_expression/GTEx_df_v2_with_utr.csv DELETED
@@ -1,3 +0,0 @@
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- size 536496564
 
 
 
 
transcript_expression/{GTEx_final_tpm_multiomics_fix.csv → GTEx_final.csv} RENAMED
File without changes
transcript_expression/GTEx_final_tpm_multiomics.csv DELETED
@@ -1,3 +0,0 @@
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transcript_expression/GTEx_read_counts_multiomics.csv DELETED
@@ -1,3 +0,0 @@
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- version https://git-lfs.github.com/spec/v1
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- oid sha256:748ee75ea2662fd209871b0476803598a54795940b6074a219ceb997c84f92da
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- size 646322752
 
 
 
 
transcript_expression/GTEx_v1_multiomics.csv DELETED
@@ -1,3 +0,0 @@
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- oid sha256:7ea6fde2f3f6278fe956bba63e100947ead8fce5ea3c6d3718aaf7b1f99a782e
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