fix

multi_omics_transcript_expression.py

@@ -322,10 +322,10 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
         split_df = df.loc[df["split"] == split]
 
         norm_values_df = pd.read_csv(self.normalization_values_csv_file)
-        m_t = norm_values_df["m_t"]
-        sigma_t = norm_values_df["sigma_t"]
-        m_g = norm_values_df["m_g"]
-        sigma_g = norm_values_df["sigma_g"]
+        m_t = norm_values_df[[f"m_t_{tissue}" for tissue in LABELS_V1]].to_numpy()
+        sigma_t = norm_values_df[[f"sigma_t_{tissue}" for tissue in LABELS_V1]].to_numpy()
+        m_g = norm_values_df[[f"m_g_{tissue}" for tissue in LABELS_V1]].to_numpy()
+        sigma_g = norm_values_df[[f"sigma_g_{tissue}" for tissue in LABELS_V1]].to_numpy()
 
         key = 0
         for idx, coordinates_row in split_df.iterrows():
@@ -345,7 +345,6 @@ class TranscriptExpressionHandler(GenomicLRATaskHandler):
                 negative_strand=negative_strand,
                 filter_out_sequence_length=self.filter_out_sequence_length,
             )
-            print('ok')
             if padded_sequence:
                 yield key, {
                     "transcript_id": coordinates_row["transcript_id_gtex"],