hdallatorre commited on
Commit
5a37558
·
1 Parent(s): 4553fbd

feat: Add deepstarr dataset

Browse files
nucleotide_transformer_downstream_tasks_multilabel.py CHANGED
@@ -41,13 +41,15 @@ _HOMEPAGE = "https://github.com/instadeepai/nucleotide-transformer"
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  _LICENSE = "https://github.com/instadeepai/nucleotide-transformer/LICENSE.md"
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- _TASKS = [("deepstarr", 6)]
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  class NucleotideTransformerDownstreamTasksConfig(datasets.BuilderConfig):
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  """BuilderConfig for The Nucleotide Transformer downstream taks dataset."""
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- def __init__(self, *args, task: str, num_labels=int, **kwargs):
 
 
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  """BuilderConfig downstream tasks dataset.
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  Args:
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  task (:obj:`str`): Task name.
@@ -60,14 +62,17 @@ class NucleotideTransformerDownstreamTasksConfig(datasets.BuilderConfig):
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  )
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  self.task = task
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  self.num_labels = num_labels
 
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  class NucleotideTransformerDownstreamTasks(datasets.GeneratorBasedBuilder):
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  VERSION = datasets.Version("1.1.0")
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  BUILDER_CONFIG_CLASS = NucleotideTransformerDownstreamTasksConfig
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  BUILDER_CONFIGS = [
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- NucleotideTransformerDownstreamTasksConfig(task=task, num_labels=num_labels)
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- for (task, num_labels) in _TASKS
 
 
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  ]
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  DEFAULT_CONFIG_NAME = "deepstarr"
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@@ -77,7 +82,7 @@ class NucleotideTransformerDownstreamTasks(datasets.GeneratorBasedBuilder):
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  "name": datasets.Value("string"),
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  }
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  labels_dict = {
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- f"label_{i}": datasets.Value("float32")
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  for i in range(self.config.num_labels)
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  }
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  features_dict.update(labels_dict)
 
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  _LICENSE = "https://github.com/instadeepai/nucleotide-transformer/LICENSE.md"
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+ _TASKS_NUM_LABELS_DTYPE = [("deepstarr", 6, "float32")]
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  class NucleotideTransformerDownstreamTasksConfig(datasets.BuilderConfig):
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  """BuilderConfig for The Nucleotide Transformer downstream taks dataset."""
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+ def __init__(
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+ self, *args, task: str, num_labels=int, dtype: str = "int32", **kwargs
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+ ):
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  """BuilderConfig downstream tasks dataset.
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  Args:
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  task (:obj:`str`): Task name.
 
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  )
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  self.task = task
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  self.num_labels = num_labels
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+ self.dtype = dtype
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  class NucleotideTransformerDownstreamTasks(datasets.GeneratorBasedBuilder):
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  VERSION = datasets.Version("1.1.0")
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  BUILDER_CONFIG_CLASS = NucleotideTransformerDownstreamTasksConfig
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  BUILDER_CONFIGS = [
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+ NucleotideTransformerDownstreamTasksConfig(
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+ task=task, num_labels=num_labels, dtype=dtype
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+ )
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+ for (task, num_labels, dtype) in _TASKS_NUM_LABELS_DTYPE
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  ]
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  DEFAULT_CONFIG_NAME = "deepstarr"
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  "name": datasets.Value("string"),
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  }
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  labels_dict = {
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+ f"label_{i}": datasets.Value(self.config.dtype)
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  for i in range(self.config.num_labels)
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  }
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  features_dict.update(labels_dict)