Commit
·
5a37558
1
Parent(s):
4553fbd
feat: Add deepstarr dataset
Browse files
nucleotide_transformer_downstream_tasks_multilabel.py
CHANGED
@@ -41,13 +41,15 @@ _HOMEPAGE = "https://github.com/instadeepai/nucleotide-transformer"
|
|
41 |
|
42 |
_LICENSE = "https://github.com/instadeepai/nucleotide-transformer/LICENSE.md"
|
43 |
|
44 |
-
|
45 |
|
46 |
|
47 |
class NucleotideTransformerDownstreamTasksConfig(datasets.BuilderConfig):
|
48 |
"""BuilderConfig for The Nucleotide Transformer downstream taks dataset."""
|
49 |
|
50 |
-
def __init__(
|
|
|
|
|
51 |
"""BuilderConfig downstream tasks dataset.
|
52 |
Args:
|
53 |
task (:obj:`str`): Task name.
|
@@ -60,14 +62,17 @@ class NucleotideTransformerDownstreamTasksConfig(datasets.BuilderConfig):
|
|
60 |
)
|
61 |
self.task = task
|
62 |
self.num_labels = num_labels
|
|
|
63 |
|
64 |
|
65 |
class NucleotideTransformerDownstreamTasks(datasets.GeneratorBasedBuilder):
|
66 |
VERSION = datasets.Version("1.1.0")
|
67 |
BUILDER_CONFIG_CLASS = NucleotideTransformerDownstreamTasksConfig
|
68 |
BUILDER_CONFIGS = [
|
69 |
-
NucleotideTransformerDownstreamTasksConfig(
|
70 |
-
|
|
|
|
|
71 |
]
|
72 |
DEFAULT_CONFIG_NAME = "deepstarr"
|
73 |
|
@@ -77,7 +82,7 @@ class NucleotideTransformerDownstreamTasks(datasets.GeneratorBasedBuilder):
|
|
77 |
"name": datasets.Value("string"),
|
78 |
}
|
79 |
labels_dict = {
|
80 |
-
f"label_{i}": datasets.Value(
|
81 |
for i in range(self.config.num_labels)
|
82 |
}
|
83 |
features_dict.update(labels_dict)
|
|
|
41 |
|
42 |
_LICENSE = "https://github.com/instadeepai/nucleotide-transformer/LICENSE.md"
|
43 |
|
44 |
+
_TASKS_NUM_LABELS_DTYPE = [("deepstarr", 6, "float32")]
|
45 |
|
46 |
|
47 |
class NucleotideTransformerDownstreamTasksConfig(datasets.BuilderConfig):
|
48 |
"""BuilderConfig for The Nucleotide Transformer downstream taks dataset."""
|
49 |
|
50 |
+
def __init__(
|
51 |
+
self, *args, task: str, num_labels=int, dtype: str = "int32", **kwargs
|
52 |
+
):
|
53 |
"""BuilderConfig downstream tasks dataset.
|
54 |
Args:
|
55 |
task (:obj:`str`): Task name.
|
|
|
62 |
)
|
63 |
self.task = task
|
64 |
self.num_labels = num_labels
|
65 |
+
self.dtype = dtype
|
66 |
|
67 |
|
68 |
class NucleotideTransformerDownstreamTasks(datasets.GeneratorBasedBuilder):
|
69 |
VERSION = datasets.Version("1.1.0")
|
70 |
BUILDER_CONFIG_CLASS = NucleotideTransformerDownstreamTasksConfig
|
71 |
BUILDER_CONFIGS = [
|
72 |
+
NucleotideTransformerDownstreamTasksConfig(
|
73 |
+
task=task, num_labels=num_labels, dtype=dtype
|
74 |
+
)
|
75 |
+
for (task, num_labels, dtype) in _TASKS_NUM_LABELS_DTYPE
|
76 |
]
|
77 |
DEFAULT_CONFIG_NAME = "deepstarr"
|
78 |
|
|
|
82 |
"name": datasets.Value("string"),
|
83 |
}
|
84 |
labels_dict = {
|
85 |
+
f"label_{i}": datasets.Value(self.config.dtype)
|
86 |
for i in range(self.config.num_labels)
|
87 |
}
|
88 |
features_dict.update(labels_dict)
|