dataset: name: gh_cl embeddings_frame: null embedding_model: name: 'openai:' objects: - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1 label: Delete meaningless upper level terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/10 label: 'NTR: magnocellular neurosecretory cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/100 label: merge egg (cell) and female gamete - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1000 label: '[NTR]enteroendocrine cell of appendix' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1001 label: '[NTR]: medullary lymphocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1002 label: '[NTR]: medullary sinus macrophage' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1003 label: Added L6b subplate (Mus) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1004 label: Added L2/3 IT MOp (Mus) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1005 label: Added "soma" in description - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1006 label: Added L4/5 IT MOp (Mus) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1007 label: Truncating smooth muscle cell of the brain vasculature equivalent to - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1008 label: Truncated SMC of the brain vasculature equivalent to - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1009 label: Added L5 IT MOp (Mus) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/101 label: Dev Request - add definitions to imports - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1010 label: Added L6 IT MOp (Mus) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1011 label: Added L4 IT MOp - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1012 label: Added L5/6 NP MOp (Mus) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1013 label: adding present-in-taxon - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1014 label: Update presentations.md - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1015 label: Added missing BDS subset tags - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1016 label: '[Class hierarchy] CL:0008001 is_a CL:0011115' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1017 label: '[NTR] mesothelial fibroblast' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1018 label: '[NTR] T cell of appendix' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1019 label: '[NTR] B cell of appendix' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/102 label: Potentially incorrect inference from lacks_membrane_part - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1020 label: '[NTR] plasma cell of appendix' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1021 label: add activated CD4+ T cell subtypes and activated CD8+ T cell subtypes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1022 label: '[Logical def] Some CL terms that need taxon restrictions' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1023 label: Document uses of CL ontology terms in other ontologies - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1024 label: '[NTR] circulating T follicular helper cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1025 label: '[NTR] activated circulating T follicular helper cell ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1026 label: '[NTR]conventional dendritic cell type i' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1027 label: '[NTR]conventional dendritic cell type ii' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1028 label: '[NTR] Immature Enterocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1029 label: '[NTR] Mature Enterocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/103 label: 'NTR: conjunctiva goblet cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1030 label: '[NTR]alveolar fibroblast' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1031 label: '[NTR]capillary aerocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1032 label: Add CL_0009013 (fetal hepatobiliary progenitor cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1033 label: Fixing l6b clash - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1034 label: Adding pato morphology - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1035 label: '[NTR] dendritic cell of appendix' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1036 label: Added morphological subclasses - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1037 label: Add 4 grouping classes for appendix - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1038 label: '[Text def] CL:1001585 appendix glandular cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1039 label: Move extended description to editors notes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/104 label: Olfactory epithelial support CL_0000853 cell definition doesn't work for fish. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1040 label: Added Meis 2 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1041 label: Added obocheck - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1042 label: Fix errors in BDS subset tag - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1043 label: 2021-04-22 release - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1044 label: Add 6 grouping terms for appendix - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1045 label: Update cl-edit.owl - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1046 label: Update cl-edit.owl - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1047 label: Add synonyms to "brush cell of epithelium proper of large intestine" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1048 label: '[NTR] telocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1049 label: '[NTR] interstitial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/105 label: Create strategy for maintaining axioms connecting ssAOs to CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1050 label: '[NTR] Basket L2/3 PV-like SST (Mus)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1051 label: '[NTR] Martinotti L2/3 PV-like SST (Mus)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1052 label: Added morphological subclasses for L2/3 PV-like SST - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1053 label: Alveolar Fibroblast 1 [NTR] - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1054 label: Alveolar Fibroblast 2 [NTR] - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1055 label: Capillary 1 cell [NTR] - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1056 label: Capillary 2 cell [NTR] - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1057 label: Mucous Cell [NTR] - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1058 label: Interstitial macrophage [NTR] - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1059 label: Pulmonary Submucosal Gland [NTR] - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/106 label: Create importer that brings plant and animal cells into same ontology - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1060 label: Terminal ciliated duct basal cell [NTR] - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1061 label: '[NTR] stromal cell of appendix lamina propria' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1062 label: '[NTR] macrophage of appendix' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1063 label: Arachnoid barrier cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1064 label: '[Logical def] CL:2000002 ''decidual cell'' and GO:0046697 ''decidualization''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1065 label: '[NTR] cnidocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1066 label: Labels of 2 x-secreting cell types - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1067 label: '[Obsolete] CL:1000606 ''kidney nerve cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1068 label: '[Typo/Bug] CL:0000029 ''neuron neural crest derived''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1069 label: '[Merge] CL:0000111 ''peripheral neuron''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/107 label: eukaryotic cell has part nucleus - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1070 label: '[Logical def] Add TC to CL:0000411 flatworm hypodermal cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1071 label: relabel CL:0000029 'neuron neural crest derived' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1072 label: add taxon restraint to CL:0000411 flatworm hypodermal cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1073 label: add new term CL_0011029 (cnidocyte) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1074 label: '[Obsolete] CL:0010022 ''cardiac neuron''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1075 label: '[Class hierarchy] CL:0005019 ''pancreatic epsilon cell'' is not linked to pancreas' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1076 label: '[Class hierarchy] CL:0002278 ''GIP cell'', missing link to small intestine' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1077 label: Improve CL:0000118 'basket cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1078 label: Improved CL:0000118 'basket cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1079 label: added some PATO morphology annotations - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/108 label: New release required, as imports/import_go.owl references obsolete class - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1080 label: Add CL_0009035 and CL_0009036 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1081 label: Revised definition and placement for lymphoid tissue-inducer cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1082 label: 'Revisions to lymphoid tissue-inducer cell Fixes #1081' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1083 label: '[NTR] intestinal crypt stem cell of anal canal' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1084 label: '[NTR] enteroendocrine cell of anal canal' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1085 label: '[NTR] tuft cell of anal canal' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1086 label: '[NTR] enterocyte of anal canal' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1087 label: '[NTR] goblet cell of anal canal' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1088 label: '[NTR] transit amplifying cell of anal canal' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1089 label: '[NTR] paneth cell of anal canal' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/109 label: Cerebrospinal fluid-contacting neurons (new term) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1090 label: '[NTR] microfold cell of epithelium proper of anal canal' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1091 label: '[NTR] stromal cell of anal canal lamina propria' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1092 label: '[NTR] stratified squamous epithelial cell of anal canal' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1093 label: Change neurons relation from 'part of' to 'has soma location' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1094 label: Edited A7 cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1095 label: Updated pyramidal neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1096 label: '[NTR] CGE and MGE derived GABAergic neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1097 label: '[NTR] Morphology based neurons' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1098 label: Fixed L2/3/5 Fan martionotti SST - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1099 label: Added MGE and CGE derived interneuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/11 label: 'NTR: Lugaro cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/110 label: NTR - effector memory CD8-positive, alpha-beta T cell - Terminally differentiated - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1100 label: '[NTR] L6 Th+ SST/PV cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1101 label: L5/6 cck cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1102 label: Obsolete all grouping terms "X cell, human" terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1103 label: 'New term request: Lymphoblast' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1104 label: '[NTR]monocyte-derived_dendritic_cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1105 label: '[NTR]dermal microvascular endothelium cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1106 label: Added L6 Th+ SST - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1107 label: 'Neuroglioform cell -> neurogliaform ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1108 label: Add morphology based neuron classes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1109 label: '[NTR] smooth muscle cell of anal canal' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/111 label: small intestine crypt goblet cell EquivalentTo 'smooth muscle cell' and (part_of some kidney) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1110 label: Made improvements to neurogliaform cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1111 label: Added morphological subclasses for L6 IT - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1112 label: UUID IRI used in six axioms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1113 label: Create CL Euarchontoglires slim when the Uberon one is available - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1114 label: Fixed typo in Meis 2 cortical GABAergic cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1115 label: '[NTR] T cell of anorectum' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1116 label: '[NTR] B cell of anorectum' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1117 label: '[NTR] intestinal crypt stem cell of colon' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1118 label: '[NTR] enteroendocrine cell of colon' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1119 label: '[NTR] tuft cell of colon' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/112 label: langerin-negative dermal dendritic cell (CL:0002459) issues - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1120 label: '[NTR] enterocyte of colon' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1121 label: '[NTR] stromal cell of lamina propria of colon' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1122 label: '[NTR] goblet cell of colon' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1123 label: '[NTR] colon macrophage' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1124 label: '[NTR] anorectum macrophage' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1125 label: Added PATO projection terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1126 label: Added subclasses of morphology based neurons - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1127 label: added PATO terms to basket cell subclasses - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1128 label: '[Class hierarchy] small, large and nest basket cells might be under neocortex basket cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1129 label: Release 2021-06-21 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/113 label: sensory neurons and hair cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1130 label: Obsolete GO term [GO:0098537 ! obsolete lobed nucleus] being used - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1131 label: Fixed obsoleted lobed nucleus - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1132 label: Add mega-hacky check for obsoletes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1133 label: '[NTR] Club cell of the urethra epithelium' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1134 label: '[NTR] Hillock cell of the urethra epithelium' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1135 label: '[NTR] Neuroendocrine cell of prostate epithelium' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1136 label: 'Added BDS subset tag to morpho type neurons ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1137 label: '''flatworm hypodermal cell'' xref to C. elegans ''hypodermal cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1138 label: Names of classes added for BDS need shortening - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1139 label: Add pyramidal family morphology axiom to L5 ET - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/114 label: new term proposal catecholaminergic neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1140 label: Added pyramidal morpho to L5 ET - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1141 label: Shortening bds cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1142 label: fixing 1137 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1143 label: Add pre-processing required for taxon constraints - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1144 label: '[Logical def] for spermatocyte is circular and deviates from text def' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1145 label: '[Class hierarchy] protoplast/spheroblast' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1146 label: Make a new issue template for TCs - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1147 label: '[Synonym] L5 ET Synonyms ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1148 label: Dubious single-is-a-children - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1149 label: obsoletion candidates - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/115 label: Ensure FBbt xrefs are up to date - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1150 label: somatic cell classification is massively incomplete - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1151 label: compound eye retinal cell is at an odd level of specifiity - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1152 label: Additional TCs, additional part-hood axioms, and pre-release - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1153 label: Edit L5 ET Synonyms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1154 label: 2021-06-29 Release - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1155 label: add cells in lungmap ontology not in CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1156 label: '[NTR] enteroendocrine cell of small intestine' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1157 label: '[NTR] interstitial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1158 label: Add CL_0009006 (enteroendocrine cell of small intestine) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1159 label: Add CL_0009038 (colon macrophage) and CL_0009039 (colon goblet cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/116 label: Move repo to github - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1160 label: Add CL_0009040 (stromal cell of lamina propria of colon) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1161 label: "Add CL_0009041 (tuft cell of colon) and CL_0009042 (enteroendocrine c\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1162 label: "Add CL_0009043 (intestinal crypt stem cell of colon) and edit CL_0009\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1163 label: Edit CL_0009011 (transit amplifying cell of large intestine) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1164 label: Add CL_0009044 (lymphocyte of small intestine lamina propria) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1165 label: Make anatomograms use case explicit - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1166 label: "Add CL_0009045 (B cell of medullary sinus of lymph node) and CL_00090\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1167 label: Add CL_0009047 (macrophage of medullary sinus of lymph node) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1168 label: Update README with training and documentation - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1169 label: Add CL_0009048 (anorectum macrophage) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/117 label: CL:0002550 should have label "fibroblast of the conjunctiva" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1170 label: Add CL_0017002 (prostate neuroendocrine cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1171 label: '[NTR] Hillock Cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1172 label: Add CL_0017003 (epithelial cell of prostatic urethra) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1173 label: "Fix typo in def of CL_0000107 (autonomic neuron) + test for spurious \u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1174 label: DO NOT MERGE - Add CL_0009049 'B cell of anorectum' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1175 label: Trying to solve serialisation/diff issues - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1176 label: Shawn Noisy Diff - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1177 label: Tiago Noisy Diff - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1178 label: Nicole noisy diff - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1179 label: Nico Noisy Diff - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/118 label: 'NTR: brain vascular pericyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1180 label: Unifying xsd:string representation in CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1181 label: fix DOI fo L6b glut - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1182 label: Fibroblasts are not epithelial cells! - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1183 label: '[Typo/Bug]. Incorrect classifications under epithelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1184 label: '[Typo/Bug] are mesothelial fibroblasts mesothelial cells' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1185 label: Epithelial and mesothelial fibroblast issues - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1186 label: '[Class hierarchy] Fibroblasts are not epithelial cells!' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1187 label: Revise patterns and adding docs - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1188 label: Adding normalisation documentation - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1189 label: Update contributing.md - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/119 label: 'NTR: brain microvascular endothelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1190 label: Add CL_0009050 (B cell of anorectum) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1191 label: Add 3 terms for anatomograms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1192 label: revise superclass - somatic cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1193 label: Make xsd:string normalisation work with MacOS's sed. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1194 label: Add 3 cell types of anorectum - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1195 label: Add CL_0009057 (anorectum goblet cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1196 label: Add CL_0009058 (enterocyte of anorectum) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1197 label: Add CL_0009060 (tuft cell of anorectum) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1198 label: Add telocyte (CL:0017004) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1199 label: Bi-directionality of FBbt-CL mappings - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/12 label: Remove sensu qualifier from hemocyte - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/120 label: 'NTR: mononuclear cells of umbilical cord' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1200 label: '[NTR] L2/3 IT MOp (human)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1201 label: '[NTR] L5 IT MOp (human)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1202 label: '[NTR] L6 IT MOp (human)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1203 label: '[NTR] L5/6 NP MOp (human)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1204 label: Added Human Glut Types - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1205 label: normalise - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1206 label: '[NTR] L5/6 NP (Marmosets)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1207 label: '[NTR] L2/3 IT (Marmosets)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1208 label: '[NTR] L5 IT (Marmoset)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1209 label: '[NTR] L6 IT (Marmosets)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/121 label: 'NTR: 3 new terms' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1210 label: '[NTR] Meis2 (Marmoset)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1211 label: "Edit CL:0009025 'mesothelial cell of large intestine' to become 'meso\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1212 label: Add CL_0009061 (intestinal crypt stem cell of anorectum) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1213 label: Add CL_0009062 (enteroendocrine cell of anorectum) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1214 label: Add CL_0009063 (enteroendocrine cell of anorectum) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1215 label: Add CL_0009065 (tuft cell of anorectum) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1216 label: Add CL_0009066 (stratified squamous epithelial cell of anal canal) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1217 label: DO NOT MERGE - CL_0009067 (enterocyte of colon) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1218 label: 2021-08-06 Release - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1219 label: Imported Callithrix jacchus - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/122 label: magnocellular neurosecretory cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1220 label: 2021-08-10 release - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1221 label: Release 2021-08-10 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1222 label: release 2021-08-10 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1223 label: imported NCBITaxon:9483 Callithrix jacchus - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1224 label: Added marmoset terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1225 label: normalise string - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1226 label: Uberon import uberon 8410037 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1227 label: Uberon import UBERON:8410037 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1228 label: Super hacky Uberon import 8410037 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1229 label: Current issues with CL/FBbt mappings - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/123 label: "(flowCL project) Lacks pmp \u201CCD14 molecule\u201D missing in \"dendritic\ \ cell, human\"" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1230 label: '[Logical def] Pyramidal neuron equiv class ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1231 label: '[Class hierarchy] L5/6 CCK Vip equiv class' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1232 label: Create new_uberon_import.md - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1233 label: L5/6 CCK Vip equiv class - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1234 label: Close all stalled issues? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1235 label: Fixing Cajal-Retzius cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1236 label: Added reticulospinal neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1237 label: Added subtypes for spiral ganglion neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1238 label: Added Amygdala and cerebral cortex pyramidal cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1239 label: Import fix - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/124 label: "(flowCL project) Lacks pmp \u201Clow affinity immunoglobulin gamma Fc region\ \ receptor III\u201D missing in \"dendritic cell, human\"" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1240 label: relax pyramidal neuron equiv class - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1241 label: Merged CL:0011107 into CL:0000636 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1242 label: Fixed Magnocellular Neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1243 label: Added vestibular afferent neurons and its subtypes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1244 label: "Fixed capitalization of \"Lieberkuhn\" in def. of CL:1000338 'enterocyt\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1245 label: Create GH actions to autodeploy documentation - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1246 label: Add synonym to CL:0000020 spermatogonium - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1247 label: Add CL_0009037 (lymph node mantle zone B cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1248 label: Add CL_0009049 (smooth muscle cell of high endothelial venule) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1249 label: '[NTR] L6 IT Car3 and L6 IT (non-Car3)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/125 label: "(flowCL project) Lacks pmp \u201CCD14 molecule\u201D missing in \"plasmacytoid\ \ dendritic cell, human\"" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1250 label: Added L5/6 non-Martinotti SST - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1251 label: Add obo:CL_0009059 (plasma cell of medullary sinus of lymph node) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1252 label: Import UBERON:8410065 and UBERON:8410066 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1253 label: Uberon import - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1254 label: Typo in definition of CL_0000119 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1255 label: Import UBERON:8410003 'ductal plate' in CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1256 label: New terms and edits for SCA - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1257 label: 09-09-2021 release - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1258 label: '[NTR] Deepening Azimuth annotations' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1259 label: '[Typo/Bug] Typos in defs of CL:4023027 and CL:4023031' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/126 label: "(flowCL project) Lacks pmp \u201Clow affinity immunoglobulin gamma Fc region\ \ receptor III\u201D missing in \"plasmacytoid dendritic cell, human\"" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1260 label: 'HubMap CCF reporter: same cell type name, different IDs?' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1261 label: Trying to switch GO to GO Plus - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1262 label: 'OBO challenge 2023: go green in CL OBO dashboard' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1263 label: As depicted_by annotations pointing to SwissBioPics - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1264 label: Make 'auditory system neuron' broader. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1265 label: '[Class hierarchy] Betz cells should be subclass of L5 ET' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1266 label: '[Typo/Bug] mononuclear & multinucleate phagocyte have no children!' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1267 label: add ID range for Joshua Fortriede - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1268 label: Remove bogus cross-reference from nephrocyte. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1269 label: cells classified under 'supporting cell of cochlea' should be under 'organ of corti supporting cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/127 label: "(flowCL project) Lacks pmp \u201CCD14 molecule\u201D missing in \"myeloid\ \ dendritic cell, human\"" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1270 label: Added layer axioms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1271 label: Uberon import issues (again) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1272 label: Edited enterocyte terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1273 label: Add taxon annotation to CL_0009013 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1274 label: Add synonym to 'transit amplifying cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1275 label: normalise master - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1276 label: uberon import - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1277 label: Update cellPartOfAnatomicalEntity.yaml - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1278 label: Add subset annotation to CL:0009046 'T cell of medullary sinus of lymph node' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1279 label: '[NTR] Add CL terms for thymus ASCT+B table' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/128 label: "(flowCL project) Lacks pmp \u201Clow affinity immunoglobulin gamma Fc region\ \ receptor III\u201D missing in \"myeloid dendritic cell, human\"" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1280 label: '[NTR] pulmonary lipofibroblast' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1281 label: '[NTR] Ureteric bud cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1282 label: '[NTR] Hepatic portal fibroblast' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1283 label: " Add subset annotation to CL:0009046 'T cell of medullary sinus of ly\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1284 label: Add a workflow to automatically close stale issues. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1285 label: Fix typos in defs of CL:4023027 and CL:4023031 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1286 label: Normalising xsd:string - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1287 label: 'Improve documentation for ODK imports ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1288 label: Improve documentation on how to contribute to CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1289 label: Update ODK - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/129 label: "(flowCL project) Lacks pmp \u201CC-X-C chemokine receptor type 3\u201D missing\ \ in \"Tc17 cell\"" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1290 label: Add a comment on an issue when marking it as stale. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1291 label: Fix the stale-issues workflow. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1292 label: Fix the comment emitted when marking an issue as stale. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1293 label: '[Typo/Bug] Typo in labels of CL:0002455 and CL:0002456' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1294 label: ' progenitor cell of endocrine pancreas is not a stem cell #80' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1295 label: ' axioms of pancreas related cell types #29' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1296 label: Add ID range for Damien Goutte-Gattat and fix bogus prefix. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1297 label: ' [NTR] Add CL terms for thymus ASCT+B table #1279' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1298 label: Merged CL:100416 into CL:0002324 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1299 label: Added displaced amacrine cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/13 label: Add grouping class 'lens fiber cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/130 label: "(flowCL project) Synonym of \"HLA-DR\" missing in \u201CMHC class II histocompatibility\ \ antigen alpha chain HLA-DRA\u201D" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1300 label: Fix typos in labels of CL:0002455 and CL:0002456 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1301 label: Merging certain cortical terms into species agnostic - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1302 label: 'Add TCs for #1279' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1303 label: ' [NTR]: tuft cell of small intestine #791' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1304 label: Change Betz to subclass of L5 ET - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1305 label: fix auditory hair cell issues - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1306 label: 'Dangling CARO term and CARO incompatibility with CL ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1307 label: 'DO NOT MERGE Added 3 human DN terms for #1279' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1308 label: add new term CL_0011030 (dermal microvascular endothelial cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1309 label: add class CL_0011031 (monocycte-derived dendritic cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/131 label: (flowCL project) Synonyms of IgA, IgD, IgE, IgG and IgM in immunoglobulin complexes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1310 label: add term CL_0011032 (lysosome-rich enterocyte) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1311 label: Fix wrong CL Ids - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1312 label: '[Typo/Bug] Typo in label and synonym of CL:4023036 Chandelier Pvalb GABAergic cortical interneuron (Mus musculus)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1313 label: Make chandelier c small - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1314 label: '[Typo/Bug] Typo in labels of ''Fraction'' cell types' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1315 label: Release files 23.11.2021 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1316 label: Add QC query to remove RO defs prior to OORT step - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1317 label: Added Layer Axioms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1318 label: add new terms for alveolar capillary cells and pulmonary capillary endothelial cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1319 label: Add logical defs for subtypes of spiral ganglion neurons - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/132 label: (flowCL project) CD11c in "myeloid dendritic cell, human" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1320 label: '[NTR] SST chodl gabaergic interneuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1321 label: 'Edited existing DN2/3/4 thymocite terms for #1279' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1322 label: 'Added 3 DN human thymocyte terms for #1279' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1323 label: Added SST Chodl - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1324 label: Typo in label of CL:0002181 mucus neck cell of gastric gland - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1325 label: Typo in labels of CL:4023023 and CL:4023024 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1326 label: Revise synonym of CL:0000192 smooth muscle cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1327 label: Typo in label of CL:0002318 periperhal blood mesothelial cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1328 label: Capitalization of pvalb/Pvalb - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1329 label: Revise label of CL:0000630 supportive cell? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/133 label: Should a "naive regulatory T cell" be is_a "regulatory T cell"? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1330 label: 2021-11-25 Release - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1331 label: big letters to small letters - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1332 label: fix typo in CL_0002318 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1333 label: fix synonym scope for CL:0000191 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1334 label: relabel mucous neck cell of gastric gland - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1335 label: 'Add ''epithelial cell of endometrial gland'' for #932' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1336 label: revise label for supporting cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1337 label: missing crucial inferences, such as hippocampal neuron is-a forebrain neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1338 label: Change hippocampal neuron to has soma location - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1339 label: Please revise labels of CL:0002570 and CL:2000080 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/134 label: add part_of relation in CL:0000066 and in CL:0000586 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1340 label: 'Edit CL:0000561 amacrine cell for #370' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1341 label: 'Edit CL:0019021 and CL:0019022 for #932' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1342 label: Please import UBERON:0001639 'hepatic portal vein' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1343 label: import UBERON:0001639 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1344 label: '[Class hierarchy] Missing parent for CL:0000241 ''stratified cuboidal epithelial cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1345 label: 'Add ''endothelial cell of respiratory system lymphatic vessel'' for #932' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1346 label: 'Add fused extravillous trophoblast for #932' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1347 label: 'Add synonym for #932' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1348 label: 'Add lung pericyte for #932' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1349 label: Cell Base Approach draft - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/135 label: 'NTR: mature dendritic cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1350 label: 'Add synonym to CL:0002499 ''spongiotrophoblast cell'' for #26' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1351 label: Please import UBERON:0004021 spongiotrophoblast layer - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1352 label: 'Unify all attribution to ORCID REF: pato#278' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1353 label: '[Typo/Bug] error in annotation of CL:1000398 ''endothelial cell of hepatic sinusoid''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1354 label: Add check to flag when a PMID is associated with anything other than dbxref - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1355 label: Release 2021-12-07 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1356 label: normalize - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1357 label: add parent to 'columnar/cuboidal epithelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1358 label: revise label for CL_0002570 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1359 label: '[Merge] CL:0002609 (neuron of cerebral cortex) into CL:0010012 (cerebral cortex neuron)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/136 label: Golgi cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1360 label: Merge CL:0002609 into CL:0010012 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1361 label: 'fix: added back xsdstrings' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1362 label: '[Typo/Bug] Add ''-E'' flag in document ''Fixing ^^xsd:string Diffs''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1363 label: Add `sed -E` flag for consistency - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1364 label: '[Merge] CL:0000717 ''fusimotor neuron'' into CL:0008037 ''gamma motor neuron''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1365 label: '[Merge] CL:0000439 ''prolactin secreting cell'' and CL:0002311 ''mammotroph''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1366 label: Fix/normalize_xsdstring - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1367 label: Merge CL:0000717 into CL:0008037 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1368 label: Typo in def of CL:0000359 vascular associated smooth muscle cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1369 label: Add check to flag when a PMID is associated with anything other than dbxref - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/137 label: Standardize label for Norepinephrine - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1370 label: 'add terms: alveolar fibroblasts (2)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1371 label: 'Add last 3 terms needed for #932' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1372 label: 'Add final term for #932' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1373 label: Restrict CL:0000034 'stem cell' to Metazoa - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1374 label: 'Fixed def typo noted in #1368' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1375 label: obsoleting PV-like terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1376 label: Reinstating range constraints on 'has characteristic' and 'regulates' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1377 label: Unmerge has characteristic and has participant ranges temporarily - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1378 label: Revert GO MIRROR in cl.Makefile - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1379 label: Reinstate normal CLO mirror - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/138 label: Incorrect logical definition for oligodendrocyte - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1380 label: Simple and basic files are not generated according to ODK standards - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1381 label: 'Fix typo #1368' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1382 label: 'Typo fix issue #1368' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1383 label: 'For Issue #1373' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1384 label: 2021-12-16 release including standard simple and basic files generated from ODK - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1385 label: Remove some fluff from cl.Makefile - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1386 label: 'Add SST Chodl ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1387 label: 'Issue #1066 edits' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1388 label: '[DO NOT MERGE] Revert GO mirror' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1389 label: Create a DP for has-soma-location pattern - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/139 label: 'Consider adding axiom: glandular epithelial cells are columnar/cuboidal' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1390 label: '[Typo/Bug] Duplicated exact synonym in CL:0002430 and CL:0002431' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1391 label: '[Typo/Bug] Minor typo in def of CL:0000190 ''fast muscle cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1392 label: '[Class hierarchy] CL:1000433 and CL:1000435 epithelial cell of lacrimal canaliculus/duct' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1393 label: Should anucleate and nucleated be disjoint? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1394 label: 'Fix for Issue #1390 - [Typo/Bug] Duplicated exact synonym in CL:0002430 and CL:0002431 ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1395 label: 2021-01-05 release - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1396 label: '[Class hierarchy] CL:4023025 should be under SST Chodl' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1397 label: Change Long Range SST to be subclassOf SST Chodl - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1398 label: Update cl-edit.owl - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1399 label: glomerular visceral epithelial cell should be part of glomerular visceral epithelium - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/14 label: Define classes using releases_neurotransmitter - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/140 label: cardioblast has no relationship to 'cardiac muscle myoblast' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1400 label: renal beta-intercalated cell should be part of collecting duct of renal tubule - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1401 label: glomerular visceral epithelial cell part of glomerular visceral epithelium - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1402 label: '[DO NOT MERGE] Added CARO import' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1403 label: Axiomization of histological quality after they have been added to PATO - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1404 label: Documentation on importing classes to CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1405 label: Adding import documentation - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1406 label: '[Typo/Bug] on foundry description page' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1407 label: update multipolar neuron def - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1408 label: Added OxtrINs - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1409 label: '[NTR]Choroidal melanocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/141 label: 'Issue: macrophage EquivalentTo myeloid leukocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1410 label: '[NTR] Endothelial colony forming cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1411 label: '[NTR] Fibroblast-like synoviocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1412 label: '[NTR] Kisspeptin neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1413 label: '[NTR] KNDy neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1414 label: '[NTR] Leydig stem cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1415 label: '[NTR] Podocyte-like epithelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1416 label: '[NTR] Retinoblast' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1417 label: '[Synonym] add synonyms to "light melanocyte"' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1418 label: '[Synonym] add synonyms to "dark melanocyte"' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1419 label: '[Synonym] add synonym to "epithelial fate stem cell"' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/142 label: mesenchymal cell / mesenchymal stem cell (CL_0000134) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1420 label: '[Synonym] add synonyms to "mammary alveolar cell"' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1421 label: Can't seem to get PR import to work - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1422 label: Update cl-idranges.owl - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1423 label: Add BV to cl-idranges.owl - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1424 label: Added Kisspeptin neurons and subclasses - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1425 label: 'Closes #1409 - NTR choroidal melancoyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1426 label: 'Fixes #1417 Add synonyms to light melanocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1427 label: 'Closes #1411-[NTR]-fibroblast-like_synoviocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1428 label: Update CL FAIRsharing page - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1429 label: Added retinoblast - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/143 label: Proposal for segregating marker axioms in CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1430 label: 'Closes #1418 Add synonyms to dark melanocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1431 label: '[Logical def] Link CL:0002652 ''endothelial cell of high endothelial venule'' to UBERON:8410037 ''high endothelial venule''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1432 label: 'Closes #1400 - edits to renal intercalated cell types' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1433 label: "add logical def and change syn scope for 'endothelial cell of high en\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1434 label: revise superclassOf for germ cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1435 label: '[NTR] TEMRA: terminally differentiated effector memory cells re-expressing CD45RA' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1436 label: 'Closes #1420 add synonyms to "mammary alveolar cell"' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1437 label: 'Closes #1419 add synonym to ''epithelial fate stem cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1438 label: '[NTR] Oligodendrocyte/type-2 astrocyte progenitor cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1439 label: '[NTR] Thymic nurse cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/144 label: 'Project: separate out developmental precursor cells from stem cell heirarchy' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1440 label: "Closes #1435 [NTR] TEMRA: terminally differentiated effector memory c\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1441 label: Create synonym_type_property 'abbreviation' for CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1442 label: 'Closes #1438 NTR-oligodendrocyte_type_2_astrocyte_progenitor_cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1443 label: '[Merge] Merging two bronchioalveolar stem cell terms' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1444 label: Axiomatize PATO histological quality - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1445 label: Automated diff machine - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1446 label: Add alt ID and Synonym for cerebral cortex neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1447 label: 'added --labels True to ROBOT diff ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1448 label: Add CL specific docs for merging terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1449 label: 2022-02-16 Release - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/145 label: 'Project: Review all cases where cell types have multiple develops_from relatiionships' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1450 label: Added back EC axioms to CL_0000151 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1451 label: '[NTR] test' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1452 label: '[NTR] test' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1453 label: Add anatomical location to spongiotrophoblast cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1454 label: Edit 'adult endothelial progenitor cell' and add children - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1455 label: 'Closes #1439 NTR Thymic nurse cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1456 label: "Add Leydig stem cell; edit Leydig cell; correct 2 \"derives from\" into\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1457 label: Edit CL_0000645 pituicyte - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1458 label: "Remove incorrect axiom and superclasses from CL_0002459 \"langerin-neg\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1459 label: "Improve location axiom of CL_0009013 \"fetal hepatobiliary progenitor \u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/146 label: Add MESH xrefs - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1460 label: '[Synonym] exchange the ontology term label for an existing synonym' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1461 label: 'Fixes issues suggested in #1306' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1462 label: "Edit def of CL_0002619 (adult endothelial progenitor cell) to broaden\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1463 label: '[NTR] Add esophagus nonkeratinized squamous epithelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1464 label: Add CL_0009096 (esophagus non-keratinized squamous epithelial cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1465 label: "Add CL_0009097 (embryonic skeletal muscle fiber) and CL_0009098 (feta\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1466 label: Please import UBERON:0007221 neonate stage into CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1467 label: Add CL_0009099 (fibro/adipogenic progenitor cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1468 label: Edit CL_0009003 (larval midgut cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1469 label: imported UBERON:0007221 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/147 label: cl-plus-fbbt is incoherent - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1470 label: "Fixes #1399 edits to glomerular visceral epithelial cell (fresh branc\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1471 label: '[NTR] tumor-associated endothelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1472 label: '[NTR] Add new lymph node CL terms for ASCT+B' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1473 label: Random unresolvable CARO term in CL hierarchy - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1474 label: 'Fixes #1460 update glomerular visceral epithelial cell label to podocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1475 label: '[NTR] fallopian tube secretory epithelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1476 label: '[NTR] nonparenchymal liver cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1477 label: Update to ODK 1.3.0 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1478 label: Update relations_guide.md - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1479 label: Add mesenchymal cell parent to migratory neural crest cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/148 label: Proposal to obsolete CL:0000000 cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1480 label: 'Closes #1475 NTR fallopian tube secretory epithelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1481 label: Fixing non-RO relation - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1482 label: '[NTR] Add CL terms for kidney ASCT+B table' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1483 label: Update resolving_merge_conflicts.md - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1484 label: Add synonyms to enterocyte terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1485 label: remove SIO_000658 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1486 label: '[NTR] Fallopian tube ciliated cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1487 label: 'Closes #1486 [NTR] Fallopian tube ciliated cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1488 label: obsolete cardiac neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1489 label: '[Typo/Bug] Typo in synonym of CL:0002169' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/149 label: 'NTR: CD8/CD4 positive T cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1490 label: has_(not)_completed axioms on immune cells might not be accurate - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1491 label: Switching has_(not)_completed to RO terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1492 label: Should endothelial cell be a type of epithelial cell? (ditto for tissues in Uberon) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1493 label: 'Fixes #1489 [Typo/Bug] Typo in synonym of CL:0002169' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1494 label: Update h_typos_bugs.md - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1495 label: Removing auto assignments from issue templates - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1496 label: "Addresses #81 Add syns and xrefs for subtypes of glomerular visceral ep\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1497 label: Add human_reference_atlas subset - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1498 label: Add equivalence axiom to CL_0009098 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1499 label: Create GitHub.md - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/15 label: Cell type terms required by GO - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/150 label: 'NTR: pre-B cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1500 label: Add CL_0009100 (hepatic portal fibroblast) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1501 label: Added information to cardiac neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1502 label: Add comment to broad grouping terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1503 label: Strip labels of 'pericyte cell' and 'perirenal adipocyte cell' of the redundant "cell" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1504 label: Update documentation on the CL page (Citation, History and Contact Us) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1505 label: Add comment to last set of anatomogram terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1506 label: oxytocin receptor sst GABAergic cortical interneuron should not have capable of some oxytocin receptor activity - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1507 label: Cortical interneuron equivalent axiom uses cortex instead of cerebral cortex - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1508 label: 'Discussion: granularity of hepatocyte-zonation-based subclasses. ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1509 label: Broaden 'reticular cell' and add 2 descendants - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/151 label: Review precursor B-Cell and its subclasses, proposing parallel minimal commitment EC axioms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1510 label: Changed cortical interneuron to use cerebral cortex - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1511 label: Remove capable_of axioms in oxtrINs - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1512 label: Add CL_0009103 (lymph node marginal reticular cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1513 label: Please import UBERON:8410053 lymph node germinal center dark zone - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1514 label: Add B and T cell zone reticular cell terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1515 label: import uberon:8410053 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1516 label: Add CL_0009106 (medullary reticular cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1517 label: Add part_of to CL_0009104 B cell zone reticular cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1518 label: Add CL_0009107 and CL_0009108 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1519 label: Add lymphatic endothelial cell of trabecula/medulla ceiling - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/152 label: 'NTR: Segmented neutrophil in Bone marrow' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1520 label: Add centrocyte and centroblast - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1521 label: Add CL_0009113 (T follicular regulatory cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1522 label: Add CL_0009114 (monocytoid B Cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1523 label: 'Please import 3 lymph node Uberon terms ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1524 label: corneal epithelial cell should be part_of the corneal epithelium - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1525 label: "Fixes #1524 corneal epithelial cell should be part_of the corneal epi\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1526 label: 'Adding contact information as per #1504' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1527 label: 'Fixes #1441 Create synonym_type_property ''abbreviation'' for CL' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1528 label: renal interstitial pericyte - add textual definition and revise logical definition - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1529 label: Remove unmerge component - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/153 label: 'NTR: oxytocin receptor interneuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1530 label: Add obsolete replaced_by check - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1531 label: Remove `replaced_by` property from inside `rdfs:comment` - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1532 label: Decide what to do about "part of" o "develops from" ---> develops from - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1533 label: Review liver stem cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1534 label: Reference GitHub discussion - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1535 label: Add Ellen's ORCID to lymph node cell types - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1536 label: Shorten Labels for BDS related terms where possible - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1537 label: PNS neuron doest automatically classify stuff - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1538 label: Merge CL:0000111 to CL:2000032 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1539 label: Shortening labels for BDS terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/154 label: adding a synonym to a CL term - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1540 label: Excitatory neuron currently only has retinal bipolar neuron under it - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1541 label: Change part_of to has_soma_location for neuronss - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1542 label: 'Import terms for #1523' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1543 label: Change actions diff to use simple - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1544 label: Remove `replaced_by` property from comment - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1545 label: '[Typo/Bug] Incomplete classification under animal cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1546 label: 'Addresses #1545 Incomplete classification under animal cell #1545' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1547 label: Edit anatomical locations of 3 lymph node cell types - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1548 label: corneal epithelium cell should be part of corneal epithelium - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1549 label: Create LICENSE - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/155 label: Add part_of axioms for horizontal cel - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1550 label: Disambiguate follicle cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1551 label: 'Addresses #1528 renal interstitial pericyte and glomerular mesangial cell edits' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1552 label: 'Revert #1529' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1553 label: Change has characteristic to has part for terminals - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1554 label: 'Fixes #1548 corneal epithelial cell edits' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1555 label: 'Fixes #1503 Strip ''cell'' from labels of ''pericyte cell'' and ''perirenal adipocyte cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1556 label: Fix typo in PMID - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1557 label: Fix MeSH cross-references - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1558 label: Replace MeSH tree numbers with IDs - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1559 label: Added CARO import - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/156 label: 'NTR:' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1560 label: Replaced high/low plasma membrane amount with RO terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1561 label: Add new MESH xrefs - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1562 label: '[Merge] foreskin melanocyte and melanocyte of foreskin' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1563 label: Edit CL_0009106 (medullary reticular cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1564 label: Fix typo in CL_0009114 (monocytoid B Cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1565 label: Edit CL_0000015 (male germ cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1566 label: Edit oligodendrocyte precursor cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1567 label: Delete doc directory - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1568 label: Update cite.md - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1569 label: Update history.md - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/157 label: melanocyte should not be a subclass of neurecto-epithelial cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1570 label: Edit def of CL_0008016 "activated skeletal muscle satellite cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1571 label: Microglial does not derive from OPCs nor glioblast - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1572 label: Fix wrong glial cell axioms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1573 label: Update ODK 131 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1574 label: added neocortex location to 3 basket cell types - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1575 label: Added logical defs for spiral ganglion subtypes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1576 label: add myelinating glial cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1577 label: '[NTR] [ASCT+B table] proximal tubule epithelial cell (3 terms for segments 1 - 3)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1578 label: "Addresses #1577 [NTR] [ASCT+B table] proximal tubule epithelial cell \u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1579 label: '[NTR] [ASCT+B table] descending thin limb epithelial cell (3 types)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/158 label: '''visual pigment cell'' needs definition' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1580 label: Automatically ping PRs after one month of inactivity. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1581 label: '[NTR] [ASCT+B table] collecting duct intercalated cell type A' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1582 label: '[NTR] [ASCT+B table] epithelial cell of distal convoluted tubule (2 terms for early and late segments) ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1583 label: '[NTR] [ASCT+B table] connecting tubule principal cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1584 label: '[NTR] [ASCT+B table] connecting tubule intercalated cell (3 terms: parent + 2 types)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1585 label: '[NTR] [ASCT+B table] renal medullary fibroblast' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1586 label: "Addresses #1579 [NTR] [ASCT+B table] descending thin limb epithelial \u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1587 label: MIRACL preprint - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1588 label: '[NTR] neuron types' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1589 label: Should "lipophage" be a synonym of CL:0000891 'foam cell'? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/159 label: 'NTR: ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1590 label: '[Typo/Bug] Typo in def of CL:0000750 OFF-bipolar cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1591 label: Update CL Foundry Page - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1592 label: Update CL readme - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1593 label: Fix landing page for CL github io page - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1594 label: Hepatic progenitor cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1595 label: Added cite and application to readme - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1596 label: update landing page for cl docs - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1597 label: Fix typo in def of CL:0000750 OFF-bipolar cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1598 label: Final edits for lymph node cell types - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1599 label: Added synonym and PMID to foam cell terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/16 label: mesenchymal cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/160 label: 'NTRs: upper, lower motor neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1600 label: Obsolete inhibitory and excitatory neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1601 label: "Add CL_0009116 (progenitor cell of mammary luminal epithelium) and ed\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1602 label: Edit Fraction B cell terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1603 label: Switch FBbt mappings to SSSOM - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1604 label: 'hepatic progenitor cell ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1605 label: Import kidney Uberon terms to CL to support new HubMAP CL terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1606 label: Retina paper as source for new CL terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1607 label: Fix nifext_55 prefix - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1608 label: Fix TH xref prefix - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1609 label: Fix nifext_55 prefix - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/161 label: 'NTR: myelinating glial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1610 label: endoderm/hepatic progenitor - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1611 label: nurse cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1612 label: coelomocyte - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1613 label: synaptosome - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1614 label: lipid-loaded macrophage - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1615 label: hemocyte - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1616 label: arterial endothelial cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1617 label: embryonic fibroblast - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1618 label: Fetal fibroblast - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1619 label: Make README.md in this repo nicer - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/162 label: 'NTR: ''cyst''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1620 label: 'Fixes #1581 NTR collecting duct intercalated cell type A' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1621 label: 'Merge renal intercalated cell and kidney collecting duct intercalated cell? ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1622 label: Delete ct-edit ttl - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1623 label: Fix TH xref prefix - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1624 label: 'Addresses #1171 NTR hillock cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1625 label: 'Addresses #1604 hepatic progenitor cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1626 label: Add `gamete-nursing cell` and subclasses. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1627 label: Create new GitHub issue template for new term requests coming in via cellxgene - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1628 label: Remove `oboInOwl:hasOBONamespace` - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1629 label: Feedback on new CL home page - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/163 label: Add subtypes for spiral ganglion neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1630 label: CL 15 June release - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1631 label: change dce to dc - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1632 label: 'Addresses #1627 cellxgene NTR template' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1633 label: 'Addresses #1627 Update a_adding_term_cellxgene.md' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1634 label: Added some cochlear nucleus neuron types - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1635 label: Is CL:0002148 'dental pulp cell' a stem cell? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1636 label: 'unsatisfiable class: lymph node marginal reticular cell is part_of an immaterial entity' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1637 label: Change part of to adjacent to for lymph node marginal reticular cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1638 label: Update relations_guide.md - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1639 label: Fix relation for CL_0009103 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/164 label: intraepithelial cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1640 label: Standardising ORCID and contributor annotation property - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1641 label: CL Release 18.06.2022 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1642 label: Removed editors note on lymph node marginal reticular cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1643 label: Add QC for contributor and ORCID pattern - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1644 label: 'Addresses #1582-NTR-epithelial_cells_DCT' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1645 label: import early and late distal convoluted tubule Uberon terms to CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1646 label: Add QC for dcterms:contributor - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1647 label: 'Addresses #1583-NTR-connecting_tubule_principal_cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1648 label: 'Addresses #1584 NTR connecting tubule intercalated cell types' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1649 label: NTR - rln GABAergic cortical interneuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/165 label: Hepatic pit cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1650 label: 'Adresses #1585 NTR renal medullary fibroblast' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1651 label: '[NTR] stromal cell of thymus, interstitial cell of thymus [HCA]' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1652 label: 'Addresses #1651 NTR thymus cells' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1653 label: Clean up old import files. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1654 label: '[NTR] interstitial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1655 label: '[NTR] peripheral blood lymphocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1656 label: Replace alt_id annotation with owl:deprecated/replaced_by? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1657 label: 'BAMS & NPO to CL ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1658 label: '[Typo/Bug] ''gall bladder'' should be ''gallbladder''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1659 label: Add sparql check for annotations - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/166 label: '''precursor cell'' accidentally has GO ID space' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1660 label: Add Arwa Id range - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1661 label: added club cell of urethral epithelium - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1662 label: Create obsolete classes related to `alt_id` - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1663 label: (re)add the citations in prep for migration of NPO - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1664 label: Add properties to NPO - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1665 label: Add definitions to NPO - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1666 label: 'mapping NPO to CL ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1667 label: 'Addresses #1658 ''gall bladder'' should be ''gallbladder''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1668 label: Add taxon restriction to `epidermal cell (sensu Arthropoda)`. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1669 label: add synonym to 'migratory cardiac neural crest cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/167 label: olfactory epithelium cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1670 label: '[NTR] hypendymal cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1671 label: Added somatosensory neuron & trigeminal neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1672 label: '[Typo/Bug] circularity in cl.obo data-version: releases/2022-06-18 CHEBI:36080 and PR:000000001' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1673 label: revise label for CL_0000047 (neural stem cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1674 label: '[Typo/Bug] Misuse of `present_in_taxon` annotation' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1675 label: Replace string "Homo sapiens" with obo:NCBITaxon_9606 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1676 label: add hypendymal cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1677 label: remove duplicate bronchioalveolar stem cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1678 label: CL 16 August release - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1679 label: ' Add lymphoblast and B-lymphoblast' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/168 label: 'NTR: anterior visceral endoderm cell ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1680 label: '[Synonym] add M1, M2 macrophage as synonym' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1681 label: 'added rln GABAergic cortical interneuron #1649' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1682 label: EXPERIMENT! DO NOT MERGE - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1683 label: CL - PCL product - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1684 label: Add cl pcl combined product - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1685 label: 'Addresses #19 Claudius_cell_synonyms' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1686 label: add koniocellular cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1687 label: Add Axl+ dendritic cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1688 label: '[NTR] kidney collecting duct intercalated cell type B' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1689 label: 'Addresses #1688 NTR kidney collecting duct intercalated cell type B' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/169 label: 'NTR: otic epithelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1690 label: vocload synonyms encased in apostrophes[ - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1691 label: 'Addresses #1690 synonyms encased in apostrophes' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1692 label: '[Typo/Bug] Unsatisfiable classes in `cl.obo`' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1693 label: 'find all "Not" in CL ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1694 label: remove "not" in CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1695 label: '[NTR-cxg] BEST4+ intestinal epithelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1696 label: 'Addresses #1695 NTR-cxg BEST4 intestinal epithelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1697 label: 'Addresses #1680 macrophage synonyms' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1698 label: '[NTR-HCA] ''immune cell''; superseded by editing synonym for leukocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1699 label: '[DO NOT MERGE] Addresses #1698 NTR immune cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/17 label: 'NTR: Koniocellular cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/170 label: Switch to unified URI based for NIFSTD - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1700 label: Fixed IRI to be in correct range for 'kidney collecting duct beta-intercalated cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1701 label: 'Add docs on taxon restriction docs ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1702 label: 'Addresses #1698 edit synonym for leukocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1703 label: CL 15 September release - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1704 label: Add CL website to the documentation website - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1705 label: Add CL website link - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1706 label: secretory cell and capable of some endocrine hormone secretion - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1707 label: Clean upper level in cl.owl (release) a bit - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1708 label: Add docs for taxon constraints - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1709 label: Change memory T has_completed - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/171 label: cholangiocte improvements - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1710 label: change GO:0060986 to GO:0046879 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1711 label: Add hillock cells of urethra and prostate - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1713 label: '[DRAFT] Adding Retinal Cell Types from RCL' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1714 label: '[NTR] ''amacrine cell'' GABAergic and glycinergic' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1715 label: 'Addresses #1714-NTR-amacrine_cell_types' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1716 label: Change actions to use checkoutv3 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1717 label: 'Addresses #1605 Import kidney Uberon terms to CL to support new HubMAP CL terms' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1718 label: Updated telocyte definition - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1719 label: 'Addresses #1712 [Typo/Bug] ttp://www.geneontology.org/formats/oboInOwl#created_by' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/172 label: NTRs for 'adult Leydig cell' and for 'fetal Leydig cell', possibly split or relabel existing CL:0000178 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1720 label: CL 28 October release - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1721 label: 'Addresses #1718 edit telocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1722 label: Compound terms for HubMap - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1723 label: 'Addresses #1365 Fix typos for pituitary and basophilic' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1724 label: Add basophilic to basophilic terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1725 label: 'Addresses #1655 NTR ''peripheral blood lymphocyte''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1726 label: '[NTR]perineurial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1727 label: Adding Retinal Cell Types from RCL but relax to subclass - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1728 label: '[NTR]retinal ganglion specific cell type: midget ganglion cell of retina' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1729 label: '[NTR] retinal ganglion specific cell type parasol ganglion cell of retina' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/173 label: Fix def of granulosa cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1730 label: Go Go Release Diff Action - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1731 label: Add perineurial cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1732 label: Release diff poster - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1733 label: Add parasol and midget RGC - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1734 label: Fix contributor QC - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1735 label: Add gogoeditdiff trigger - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1736 label: '[NTR] valve interstitial cell (heart)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1737 label: Update diff to use base plus with new ODK - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1738 label: Add check to ensure of the branch is up to date with master - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1739 label: Pull Request Template - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/174 label: 'Failed to parse cl.obo due to a loop in the term relationships: StackOverflowError' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1740 label: '[DO NOT MERGE] Add Branch Checker' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1741 label: '[DO NOT MERGE] Add branch checker' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1742 label: Add branch checker - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1743 label: Add cell types from transcriptomic of adult human brain - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1744 label: '[NTR] subtypes of medium spiny neurons' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1745 label: '[Logical def] Hippocampal cells use Ammon''s horn instead of hippocampal formation' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1746 label: Fix typo in text definition of CL:4030030 'peripheral blood lymphocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1747 label: change hippocampal cells to relate to hippocampal formation - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1748 label: Add terms from adult human brain transcriptomics paper - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1749 label: Add simple SOPs for updating imports to CL doc - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/175 label: "T follicular helper 1 cell, T follicular helper 2 cell, T follicular helper\ \ 17 cell\t" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1750 label: POC failing up to date check - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1751 label: CL 25 November release - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1752 label: add subtypes of medium spiny neurons - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1753 label: '[NTR] ''interstitial cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1754 label: Fix `nolabels-violation` custom SPARQL query - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1755 label: Fix `nolabels-violation` sparql query - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1756 label: Update README.md - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1757 label: 'Review relations_guide.md & make suggestions ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1758 label: 'Addresses #726 obsolete valve cell type' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1759 label: '[NTR] ''valve endothelial cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/176 label: Integrate neuron types from NIF - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1760 label: Add terms for endometrium - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1761 label: 'Addresses #1736 NTR ''valve interstitial cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1762 label: Add text definitions to the following CL classes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1763 label: 'Addresses #1759 NTR valve endothelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1764 label: '[Typo/Bug] typo in text definition for ''anterior horn motor neuron''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1765 label: 'relook at anterior horn motor neuron definition ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1766 label: Import terms workflow - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1767 label: Create cl-plus artefact - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1768 label: Metazoan cell types are not consistently subclasses of 'animal cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1769 label: Genus of Kupffer cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/177 label: Classification under 'somatic cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1770 label: Change has_completed to obo:RO_0002353 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1771 label: Make gogoeditdiff manual trigger - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1772 label: CL 15 December 2022 release - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1773 label: Check up to date - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1774 label: Test edit - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1775 label: '[Text def] ''lens of camera-type eye''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1776 label: retina horizontal cell should use has_soma_location - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1777 label: change retina horizontal cell to use has_soma_location - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1778 label: Up to date branch - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1779 label: '[Text def] fix typo and change of parent term in ''apocrine cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/178 label: missing classifications under "animal cell" and "eukaryotic cell" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1780 label: '[Text def] fix typo in ''anterior lateral line neuromast mantle cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1781 label: '[Text def] fix typo in iridophore' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1782 label: Massive amount of unsats in cl-edit - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1783 label: diploid cell has no subClasses! - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1784 label: '[Merge] ''neuroendocrine cell'' and ''neurosecretory neuron''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1785 label: '[Synonym] Add syn to ''stromal cell of endometrium'' ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1786 label: 2023-01-09 release - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1787 label: Added branch status warning to diff report - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1788 label: 'Change deploy_release to use release_assets instead of assets ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1789 label: '[NTR] ''dental pulp stem cell'' + edits to ''dental pulp cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/179 label: CL_0008023 is a replaced term - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1790 label: '[NTR] ''dental pulp stem cell'' + edits to ''dental pulp cell'' #1789' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1791 label: '[Question] "anucleate" vs "enucleate"' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1792 label: 'Addresses #1781 text definition typo for iridophore' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1793 label: '[Logical def] Visceral muscle cell missing "part_of" statement' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1794 label: 'Addresses #1785 Edits to ''stromal cell of endometrium''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1795 label: '[Text def] fix typo in ''stromal cell of endometrium''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1796 label: 'Addresses #1795 text definition typo for stromal cell of endometrium' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1797 label: 'Addresses #1780 text definition typo in ''anterior lateral line neuromast mantle cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1798 label: upper-level slims - develop definition, SOP, technical architecture & implement test cases. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1799 label: 'Addresses #1762 add definitions to CL terms' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/18 label: 'NTRs: subclasses of blastoderm cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/180 label: scolopidium should not be ine CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1800 label: Change range in annotation related to date to `xsd:dateTime` instead of `xsd:string` - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1801 label: 'Addresses #1779 fix typo and change parent term in ''Apocrine cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1802 label: 'Incorrect descendants ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1803 label: 'Fixes #1389' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1804 label: 'Addresses #1784 merge' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1805 label: Update CL relations_guide.md - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1806 label: Name shortening for BDS terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1807 label: '[Typo/Bug] Location of cl.owl ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1808 label: Add symbols for BDS terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1809 label: Add ID Range - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/181 label: temporal relation used in CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1810 label: Unresolvable IRIs - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1811 label: '[NTR] respiratory ciliated cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1812 label: Change def of anterior horn motor neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1813 label: '[NTR] suprabasal keratinocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1814 label: '[NTR] early and late spermatid' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1815 label: Import OMO - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1816 label: '[Question] Are all animals part of Metazoa?' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1817 label: '[NTR] endometrial ciliated cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1818 label: 'Addresses #1816 Add synonym "metazoan cell" to "animal cell"' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1819 label: 'Addresses #1811 NTR ''respiratory ciliated cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/182 label: Should cells defined by location use part_of or has_soma_part - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1820 label: 'Underscore in cell label - Is that correct? ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1821 label: 'mappings: Allow the use of semapv:crossSpeciesExactMatch.' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1822 label: Update relations doc - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1823 label: '[Text def] CL terms without text definitions' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1824 label: Update relations_guide.md - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1825 label: 'Addresses #1814 [NTR] early and late spermatid' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1826 label: 'Resolve #1813 NTR suprabasal keratinocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1827 label: '[NTR] Peg cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1828 label: 'Addresses #1827 NTR peg cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1829 label: 'Nomenclature discussion: ", human" versus "(Homo sapiens)"' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/183 label: eye photoreceptor cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1830 label: 'Term in CL that should probably in GO: alobate nucleus' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1831 label: 'Addresses #5 Edit ciliary epithelial cells' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1832 label: 'Addressess #1726 Edit perineurial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1833 label: '[Typo/Bug] Label says "arcuate nucleus of hypothalamus KNDy neuron", definition says "A ''KDNy'' neuron ..."' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1834 label: 'Terms on Wikipedia that are not present in the Cell Ontology ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1835 label: '[Logical def] Revise logical definition of child terms of ''brush cell of trachebronchial tree''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1836 label: 'Fixes #1835 logical definition child terms of ''brush cell of tracheobronchial tree''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1837 label: Remove chebi import - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1838 label: 'Grammar fix in PR #1832' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1839 label: Trigger with comment added to branch-status - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/184 label: spheroplast - prokaryotic and eukaryotic - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1840 label: Adding missing conditional statement to branch-status action - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1841 label: '[Typo/Bug] Tag release says 2022 instead of 2023' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1842 label: Import "blood nerve barrier" from UBERON - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1843 label: 'Addresses #1817 NTR endometrial ciliated cells' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1844 label: Paneth cell lacks part_of relationship to crypt of Lierberkuhn - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1845 label: 'Addresses #1833 typo KDNy' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1846 label: 'Addresses #1837 remove CHEBI term and CHEBI import from CL' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1847 label: Update cl-idranges.owl - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1848 label: Release 2023-02-15 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1849 label: Refreshing imports 2023-02-17 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/185 label: enterocyte def - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1850 label: Migrate CL pipeline to ODK 1.4 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1851 label: id for obsoleted term added as alt-id - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1852 label: Document policy on delegating import refresh to the tech support group. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1853 label: Automatically detect when imports need refreshing? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1854 label: 'Related to #1810 unresolvable IRIs' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1855 label: enteroendocrine cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1856 label: '[NTR] ''CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1857 label: 'Tech request: audit for has_alternative_ID' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1858 label: Normalise CL to Protege 5.6.1 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1859 label: Should CL update how it uses RO:0002292 expresses? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/186 label: CL:0000164 enteroendocrine cell - def - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1860 label: 'Addresses #1855 endocrine cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1861 label: Please do a Protege 5.6.1 normalisation pull request - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1862 label: Fixing all the alt-id violations and activating QC - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1863 label: Investigate replacing instances of PR relation lacks_part with CL:4030045 lacks_part - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1864 label: 'Fixes #1855 enteroendocrine cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1865 label: '[NTR] Bipolar cells' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1866 label: '[Typo/Bug] review and revise ''gonadotropin releasing neuron''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1867 label: '[Class hierarchy] (multiple terms) - remove direct subclass to material entity' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1868 label: '[Typo/Bug] Typo ''parasol ganglion cell of retina''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1869 label: 'Addresses #1868 typo Parasol GCR' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/187 label: Change of inner ear cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1870 label: '[NTR] Retinal astrocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1871 label: 'Addresses #1870 NTR retinal astrocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1872 label: 'Fixes #1866 bug GnRH neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1873 label: 'Addresses #1856 NTR- CD24+, CD-133+, vimentin+ proximal tubular cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1874 label: Add axiom to 'CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1875 label: '[Class hierarchy] corneal endothelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1876 label: '[Synonym] photoreceptors' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1877 label: 'Addresses #1876 SYN photoreceptors' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1878 label: 'Fixes #1875 corneal endothelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1879 label: '[Logical+Text def] Megakaryocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/188 label: growth hormone releasing hormone secreting celll - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1880 label: Refresh imports - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1881 label: Remove CARO import - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1882 label: 'Addresses #1867 add ''anatomical structure'' superclass to cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1883 label: Cell types defined/named by biomarkers - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1884 label: 'endocrine cell - update logical defs, DOSDP, relations guide ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1885 label: Update logical definition endocrine cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1886 label: Update patterns of all subclasses endocrine cell to use standard pattern for endocrine cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1887 label: Add DOSDP pattern for grouping endocrine cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1888 label: Update relations guide to include new standard pattern for endocrine cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1889 label: neuroendocrine cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/189 label: definition of "cell" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1890 label: 2023-03-15 Refresh imports - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1891 label: 'Addresses #1879 EA Megakaryocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1892 label: '[NTR] Respiratory new cell types' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1893 label: 'Fixes #1793 logical definition Visceral muscle cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1894 label: "Addresses #1863 replace instances of PR relation lacks_part with CL:\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1895 label: 2023-03-16 imports refresh - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1896 label: 'Addresses #1892 NTR for respiratory new terms' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1897 label: 'Fixes #1885 logical definition endocrine cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1898 label: 'Addresses #1863 replace lacks_part with CL:4030045 lacks_part' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1899 label: '[Class hierarchy] Add part_of to Paneth cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/19 label: Claudius cell synonyms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/190 label: sensu terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1900 label: 'Fixes #1899 paneth cell part_of' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1901 label: CL:0000487 oenocyte, name and definition to review? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1902 label: release-2023-03-21 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1903 label: Remove CHEBI import from ODK config - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1904 label: Release-2023-03-21b - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1905 label: Wikidata integration - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1906 label: 'Addresses #1768 Metazoan cell types are not consistently subclasses of ''animal cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1907 label: 'Addresses #1874 add expresses vimentin' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1908 label: Build general, upper-level slim - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1909 label: Build immune slim, based on HCA PBMC hierarchy + AD prelim work. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/191 label: cardiomyocyte as synonym for cardiac muscle cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1910 label: Build eye slim - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1911 label: Review azimuth annotations for new cell types - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1912 label: Validate HCA bionetwork draft PBMC heirarchy - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1913 label: '[NTR]glial restricted tripotential precursor cell; chorionic girdle cell; enteric glial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1914 label: Generate term addition reports, - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1915 label: '[Class hierarchy] chandelier cell - add GABAergic?' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1916 label: '[Text def] Rosehip neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1917 label: 'Addresses #1909 blood_and_immune_upper_slim' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1918 label: Extend CL ODK with infrastructure for validating upper slims and generating coverage reports - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1919 label: Write an SOP for editors adding new upper-level slims or extending existing ones, & integrate this into the developers manual. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/192 label: guard cell CL:0000292 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1920 label: fixes# 1913-NTR-3_cell_type - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1921 label: Remove deprecated class from count - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1922 label: 'Addresses #1865 NTR bipolar cells' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1923 label: '[Typo/Bug] CL:4033026 missing full stop in text definition' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1924 label: 'Addresses #1923 Add full stop to text definition' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1925 label: '[Typo/Bug] Fixes for abbreviations (narrow/broad)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1926 label: '[Typo/Bug] Equivalence axiom of ''Schwann cell'' too broad' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1927 label: '[Typo/Bug] Typo in CL:4023039 amgydala excitatory neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1928 label: Fixes 1924 typo amgydala excitatory neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1929 label: Missing definitions for some FBbt-mapped terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/193 label: Leydig cell (CL:0000178) definition - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1930 label: '[Obsolete] subclasses of _visual pigment cell (sensu Nematoda and Protostomia)_' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1931 label: Intended meaning of _primary neuron_ is unknown - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1932 label: Obsolete 'primary pigment cell'. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1933 label: '[Logical def] Club cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1934 label: 'Fixes #1933 text and logical definition club cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1935 label: germ line stem cell (sensu Vertebrata / sensu Nematoda and Protostomia) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1936 label: 'Addresses #1926 fix equivalence axiom of ''Schwann cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1937 label: Obsolete clade-specific germ line stem cell terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1938 label: 'Addresses #1916 update definitions for ''rosehip neuron''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1939 label: 1918 Upper slim validation and coverage report - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/194 label: various new terms require for GO xps - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1940 label: 'Addresses #1910 Build eye slim' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1941 label: immune slim revision - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1942 label: '[Typo/Bug] keratocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1943 label: Should 'follicle stem cell' be insect-specific? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1944 label: Use wikidata mappings to add instant multi-lang support to CL. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1945 label: Write SOP for adding mappings to wikipedia directly to wikidata - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1946 label: Derive wikipedia/wikidata xrefs for CL release file directly from mappings on wikidata - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1947 label: '[NTR] - Tracheobronchial mucus secreting glandular cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1948 label: Add definitions for FBbt-mapped terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1949 label: Issues with hemocytes and related terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/195 label: related vs exact synonyms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1950 label: Obsolete 'primary neuron' and related terms. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1951 label: Fix the hemocytes hierarchy - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1952 label: CL release 2023-04-20 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1953 label: 'Addresses #1947 NTR tracheobronchial mucus secreting glandular cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1954 label: 'Fixes #1901 Oenocyte definition' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1955 label: '[slim coverage report] Add ''has soma location''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1956 label: '[NTR] CD4 and CD8 T cell lung resident memory' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1957 label: '[Class hierarchy] ''choroidal melanocyte'' and ''choroidal cell of the eye''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1958 label: 'Addresses #1957 classification and definition choroidal cells' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1959 label: 'Addresses #1956 NTR lung TRM' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/196 label: cardiac muscle myoblast & cardioblast - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1960 label: '''CNS interneuron'' is loosely defined but tightly classified' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1961 label: '''taste receptor cell'' is loosely defined but tightly classified' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1962 label: 1960-Make 'CNS interneuron' taxon-neutral - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1963 label: Make 'taste receptor cell' taxon-neutral - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1964 label: '[NTR] ''taste receptor cell of tongue''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1965 label: Add IAO:0000233 to the list of allowed annotation properties. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1966 label: 'Fixes #1964 NTR taste receptor cell of tongue and taste cell definition' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1967 label: '"syncytium" and "multinucleate cell" are treated as synonyms but correspond to different concepts' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1968 label: '"type 1 conventional dendritic cell" is given as a synonym for "conventional dendritic cell", is that correct? ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1969 label: '[Synonym] ''satellite glial cell (SGCs); amphicyte'' , to add as synonyms for CL:0000516 ''perineuronal satellite cell'' ?' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/197 label: new terms for muscle cell type - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1970 label: Improve findability of the CL Front Page website - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1971 label: '[Synonym] CL:0000016 male germ line stem cell: to add synonym ''spermatogonial stem cell''?' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1972 label: Review Specific Kidney cell type annotation mappings on Azimuth to find more detailed CL terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1973 label: Curate list of cell type free text fields names for datasets on CxG - prioritising HCA bionetwork integration datasets - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1974 label: Complete review of integration network datasets for new cell types - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1975 label: '[NTR] intermediate cell of urothelium, umbrella cell of urothelium' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1976 label: '[Logical def] taste receptor cell and chemoreceptor are not neuron (exclusively)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1977 label: 'Fixes #1976 chemoreceptors' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1978 label: 'Addresses #515 Update ''glomerular mesangial cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1979 label: 'Addresses #1908 to create an upper cell type slim' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/198 label: new terms for muscle cell type - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1980 label: Potential new cell types & mappings for whole human brain scRNAseq dataset - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1981 label: 'Addresses #114 NTR catecholaminergic neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1982 label: Refresh imports - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1983 label: 'Addresses #1982 2023-05-19 Refresh imports' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1984 label: Make 'primary neuron' teleost-specific. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1985 label: Define 'follicle stem cell' and restrict it to arthropods. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1986 label: '[Logical def] platlet' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1987 label: CL release 2023-05-22 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1988 label: '[NTR]Potential new cell types for mouse embryo scRNAseq dataset' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1989 label: Create defining_cell_types.md - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/199 label: cardiac muscle cell synonym - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1990 label: NTR - von Economo Neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1991 label: '[Class hierarchy] Myofibroblast is a ''connective tissue cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1992 label: 'Fixes #1991 myofibroblast part of connective tissue' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1993 label: 'Fixes #1986 platelet EA' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1994 label: '[NTR] lung resident memory CD8-positive CD103-positive, alpha-beta T cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1995 label: 'Addresses #1994 NTR CD8+ CD103+ lung TRM' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1996 label: New medium spiny neuron subtypes + other striatal neuron types - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1997 label: xrefs for papers should use PMID or DOI - not journal URLs - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1998 label: 'Addresses #1990 NTR ''von Economo neuron''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/1999 label: NCIt Term Suggestions for Cross-Reference - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2 label: 'should epithelial cell and neuron be disjoint? are epithelial cell and neuron disjoint? ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/20 label: Adopt common naming conventions for compositional terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/200 label: 'Updating Dictyostelium cell in the Cell Ontology ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2000 label: '[NTR] Retinal ganglion cells' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2001 label: pre-type 2 pneumocyte - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2002 label: add pre-type II pneumocyte - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2003 label: 'fixes #2001 NTR: pre-type II pneumocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2004 label: '[NTR] dorsal striatum medium spiny neurons subtypes' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2005 label: 'Addresses #2004 [NTR] dorsal striatum medium spiny neuron subtypes' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2006 label: '[NTR] ventral striatum medium spiny neurons subtypes' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2007 label: '[Text def] Add text definition for ''granule cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2008 label: '[Class hierarchy] edit ''medium spiny neuron''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2009 label: 'Addresses #2007 text def ''granule cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/201 label: Are all entities in the cell ontology cells? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2010 label: 'docs: Add some guidelines for term editors.' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2011 label: 'Addresses #1997 Fix dbxref URLs' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2012 label: Revise granule cell hierarchy to add more detail. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2013 label: Establish standard for CL database_cross_reference and contributor annotations - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2014 label: 'Addresses #2008 edit ''medium spiny neuron''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2015 label: '[Logical def] Update bladder urothelial cell classes' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2016 label: 'Addresses #2015 Update definitions for bladder urothelial cell types' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2017 label: 'Addresses #1999 Add NCIt mappings' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2018 label: How to represent neurons that may exist in more than one location - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2019 label: 'Addresses #2006 [NTR] ventral striatum medium spiny neuron subtypes' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/202 label: missing is_a links in CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2020 label: '[NTR] Pulmonary macrophages' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2021 label: '[Update] Edit ''basal cell of urothelium''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2022 label: '[Update] Edit ''urothelial cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2023 label: 'Addresses #2020 NTR alveolar macrophages' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2024 label: 'Addresses #1975 [NTR] urothelial cell types' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2025 label: 'Addresses #2022 edit ''urothelial cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2026 label: Harvest relevant elements of FBbt Ontology design patterns guide for CL relations guide - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2027 label: Make new issue template for epic tickets for new design patterns - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2028 label: '[NTR] New lung term request' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2029 label: 'Addresses #2021 [Update] Edit ''basal cell of urothelium''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/203 label: typo in class labels? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2030 label: Make kidney slim - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2031 label: Make "gut" slim (for gut bionetwork) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2032 label: Update links in issue templates to point to OLS4 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2033 label: Addresses 2028 NTR lung terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2034 label: Refresh imports 06-2023 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2035 label: 'Addresses #2034 Refresh imports 06-2023' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2036 label: CL release 2023-06-22 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2037 label: '[NTR] ''eccentric medium spiny neuron''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2038 label: 'Addresses #2027 new design pattern GitHub issue template' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2039 label: Update search widget on github.io site to use OLS4 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/204 label: proposed defintion for apocrine cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2040 label: 'Addresses #2032 update CL issue templates' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2041 label: 'Addresses #2037 NTR ''eccentric medium spiny neuron''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2042 label: '[Text def] [Class hierarchy] Revision of folliculostellate cell (not endocrine cell)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2043 label: Improve definition of choroid plexus cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2044 label: '[Update] retina-related bionetwork terms updates' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2045 label: Clarifying the 'plural term' annotation properties - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2046 label: 'Addresses #2044 retina cell type syns' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2047 label: 'Fixes #2042 folliculostellate cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2048 label: version IRIs not resolving - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2049 label: '[Class hierarchy] retinal bipolar neuron ''has soma location'' some ''inner nuclear layer of retina''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/205 label: paracrine cell proposed definition - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2050 label: 'Fixes #2049 add has soma location ''retinal bipolar neuron''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2051 label: Complete curation CxG cell type fields - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2052 label: 'Addresses #2044 remove GSE dbxrefs' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2053 label: Establish standard for CL labels with anatomical references - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2054 label: Replace synapsed_by with 'synapsed by' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2055 label: "Addresses #2054 Replaced synapsed_by with 'synapsed by' in 'cartwheel\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2056 label: Delete synapsed_by from CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2057 label: 'Addresses #2056 Deleted synapsed_by from CL' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2058 label: 'Update editor guidelines re: standardising database_cross_reference and contributor annotations' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2059 label: Revise logical definition and add synonyms to lung megakaryocyte - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/206 label: ito cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2060 label: 'Addresses #2059 Add logical definition and synonym to lung megakaryocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2061 label: '[Class hierarchy] Add axiom bronchiolar smooth muscle cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2062 label: 'Fixes #2061 hierarchy bronchiolar smooth muscle cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2063 label: 'Question: myeloid dendritic cell lineage' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2064 label: neural cell[Obsolete] - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2065 label: '[Typo/Bug] role defintion "is creating a cyclic dependancy"' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2066 label: Add datatype QC for relationships related to date - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2067 label: 'Addresses #2012 edit cerebellar granule cell and precursor' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2068 label: SOP to create slims - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2069 label: unify naming conventions and taxon axioms for species-specific cell types - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/207 label: redefinition of plasmacytoid dendritic cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2070 label: 'Addresses #2012 Edit ''dentate gyrus of hippocampal formation granule cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2071 label: '[Class hierarchy] ''endothelial cell of respiratory system lymphatic vessel'' location' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2072 label: 'Fixes #2071 ''endothelial cell of respiratory system lymphatic vessel''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2073 label: Addresses Refresh imports 07-2023 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2074 label: '[Class hierarchy] ''pulmonary capillary endothelial cell'' part of ''pulmonary capillary''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2075 label: 'Fixes #2074 pulmonary capillary endothelial cell location' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2076 label: Addresses Refresh imports 07-2023 (update) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2077 label: CL release 2023-07-20 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2078 label: "Addresses #2053 Establish standard for CL labels with anatomical ref\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2079 label: '[Merge] ''choroid plexus cell'' into ''choroid plexus epithelial cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/208 label: 'synonym: neutrophil granulocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2080 label: '[Typo/Bug] IAO_0000028 as both property and class' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2081 label: Using LLM outputs to enhance CL terms and structure - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2082 label: Classifying amacrine cells as GABAergic vs Glycinergic - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2083 label: Unobsolete excitatory and inhibitory neuron and fix current excitatory/inhibitory neuron terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2084 label: clean up imports directory - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2085 label: 'Addresses #2012 Edit ''olfactory granule cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2086 label: Telocyte and Lymphoblast do not have explicit parents - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2087 label: Change telocyte and lymphoblast subclass to seperate subclass - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2088 label: 'Addresses #2079 Merge ''choroid plexus cell'' into ''choroid plexus epithelial cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2089 label: 'Replace invalid DOI IRIs in xrefs with doi: CURIE strings.' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/209 label: apical cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2090 label: 'Addresses #2000 NTR retinal ganglion cells' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2091 label: 'Fixes #1925 abbreviation related synonyms' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2092 label: Add 'depicted by' statements to SwissBioPics - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2093 label: Remove IAO from imports - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2094 label: Correct IRI for `foaf:depiction` - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2095 label: acid secreting cell - obsolete? change logical def? merge? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2096 label: 'Fixes #2082 classifies amacrine cells GABA vs glycine and dendrite field' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2097 label: Review fibrocyte and its subclasses - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2098 label: 'Addresses #427 obsolete ''acid secreting cell'' and edit ''parietal cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/21 label: 'merge CL:1000416 ''myoepithelial cell of lactiferous gland'' into CL:0002324 ''myoepithelial cell of mammary gland'' ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/210 label: crystallin accumulating cell, rods and cones - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2100 label: syncytial trophoblast is exact synonym for CL:0000525 and UBERON:0000371 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2101 label: 'CL:0009077 & CL:0002294 are duplicates? ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2102 label: Duplicated label to synonym - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2103 label: nociceptor appears in both uberon and CL as different terms (CL edits) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2104 label: 'Addresses #2103 Edit ''pain receptor cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2105 label: 'Addresses #2103 Additional edits to ''pain receptor cell''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2106 label: '[Class hierarchy] Amacrine cells are not subclass of retina horizontal cell.' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2107 label: 'Fixes #2106 to remove horizontal cell parent term from amacrine cells' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2108 label: add "cell" to synonyms to CL_0000525 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2109 label: Update editing_guidelines.md - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/211 label: absorptive cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2110 label: merge CL:0002294 into CL:0009077 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2111 label: Add synonym QC check to CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2112 label: Add label synonym polysemy check - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2113 label: Resolve remaining MeSH Tree Numbers on native CL classes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2114 label: 'Addresses #2113 Update MESH Tree Number cross-references' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2115 label: 'Update editing_guidelines.md re: MeSH cross-references' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2116 label: Update guidance on adding URL dbxrefs (editing_guidelines.md) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2117 label: Edit 'lung neuroendocrine cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2118 label: 'Addresses #2117 Edit ''lung neuroendocrine cell'' (CL edits)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2119 label: '[NTR] perivascular cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/212 label: cardiac muscle cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2120 label: 'Addresses #2119 NTR perivascular cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2121 label: Add part_of endocrine system to 'endocrine cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2122 label: Refresh imports 08-2023 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2123 label: 'Addresses #2122 Refresh imports 08-2023' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2124 label: obsolete native cell and animal cell, they are confusing and cause missing inferences - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2125 label: CL release 2023-08-24 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2126 label: Edit 'polyploid cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/2127 label: Documentation TOC - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/213 label: cardiac muscle myoblast term consistancy - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/214 label: two terms named serotonergic neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/215 label: histaminergic neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/216 label: hypocretin-secreting neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/217 label: ionocyte - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/218 label: iridoblast - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/219 label: xanthoblast - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/22 label: 'CL:0002339 ''prostate stem cell'' vs CL:0002341 ''basal cell of prostate epithelium'' ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/220 label: leucoblast - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/221 label: erythroblast - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/222 label: cyanoblast - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/223 label: M cell def needs to fit fish - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/224 label: keratinocyte synonym - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/225 label: smooth muscle cell more general - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/226 label: auditory epithelial support cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/227 label: inner phalangeal cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/228 label: Deiter's cell definition and move - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/229 label: auditory inner hair cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/23 label: 'CL:1000409 ''myocyte of sinoatrial node'' vs CL:1000477 ''cardiac pacemaker cell of sinoatrial node'' ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/230 label: auditory outer hair cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/231 label: 2 ciliated epithelial cell children - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/232 label: 4 kidney cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/233 label: radial glial cell is_a parent tree - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/234 label: Auditory hair cell definition more general - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/235 label: merge autiotry receptor and auditory hair cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/236 label: 'macular hair cell ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/237 label: 'pancreatic epsilon cell ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/238 label: lens fiber cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/239 label: oligodendrocyte progenitor - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/24 label: 'NTR: electrocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/240 label: CL:0000026 ! nurse cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/241 label: magnocellular neurosecretory cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/242 label: interstitial cells of Cajal - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/243 label: juxtaglomerular cell needs different parent definition - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/244 label: 'Kolmer-Agduhr neuron ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/245 label: clara cell def. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/246 label: '4 Kidney epithillial cell types ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/247 label: V2, V2a, V2b, V1 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/248 label: stem cells? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/249 label: 'schwann cell ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/25 label: Term request - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/250 label: Schwann cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/251 label: bone marrow cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/252 label: fix spelling leptomemingeal cell CL:0000708 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/253 label: Merkel cell CL:0000242 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/254 label: motor neuron CL:0000100 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/255 label: hepatic stellate cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/256 label: Germ cells and gametes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/257 label: non-visual cell (sensu Vertebrata) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/258 label: 'spinal cord interneuron ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/259 label: what's included in "cell by lineage" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/26 label: NTR:spongiotrophoblast - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/260 label: realted syn - pls clarify - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/261 label: 'relationship type Q, re: letter D symbol' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/262 label: vascular endothelial cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/263 label: 'neurosecretory neuron ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/264 label: bone marrow cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/265 label: CL:0000023 Lacks definition - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/266 label: lymphangioblastic mesenchymal cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/267 label: CL:0000058 ! chondroblast - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/268 label: Th9 Cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/269 label: pneumocytes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/27 label: Cell types for CALOHA - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/270 label: toxoplasma life cycle stages - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/271 label: CL to AO part_of links - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/272 label: 'interstitial cell of Cajal ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/273 label: acinar cell? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/274 label: FMA xrefs - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/275 label: synonym clashes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/276 label: melanophage - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/277 label: non-visual photoreceptors - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/278 label: Terms EFO needs - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/279 label: Nuocytes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/28 label: Cell types for CALOHA - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/280 label: Type I of carotid body - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/281 label: somatic cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/282 label: Cell types needed for Kidney knowledge database - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/283 label: Mononuclear leukocyte - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/284 label: oligodendrocyte progenitor - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/285 label: adremergic chromaffin cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/286 label: adremergic chromaffin cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/287 label: oligodendrocyte progenitor - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/288 label: gd T-cell subtypes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/289 label: mesenchymal stem cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/29 label: axioms of pancreas related cell types - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/290 label: mammary stem cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/291 label: tether cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/292 label: CL:0000116 pioneer neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/293 label: Tc17 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/294 label: Class "Spore" is inconsistent - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/295 label: erythroid lineage cell clean up - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/296 label: corneocytes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/297 label: pancreatic stellate cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/298 label: interplexiform cell (3 terms) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/299 label: "LTi-lymphoid tissue\u2013inducer" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/3 label: 'Terms with definitions that are too vertebrate specific for their names: Terms with definitions that are too vertebrate specific for their names: ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/30 label: Add new terms for CALOHA - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/300 label: neutrophil types - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/301 label: new cell type terms from MP - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/302 label: 'enteric smooth muscle cell ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/303 label: DC update from David Dougall - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/304 label: 'NTR: nephrocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/305 label: relationship values of CL:0002011 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/306 label: Fish adrenal cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/307 label: FMA cleanup - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/308 label: bronchioalveolar stem cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/309 label: David Dougall\'s misc. terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/31 label: Align thymocyte / DN T Cell with MP - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/310 label: parentage of 'hepatic stellate cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/311 label: NTR:periodontal ligament fibroblast - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/312 label: Oddly formatted xref list for CL:0000418 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/313 label: 0002275 + 0002276 have identical definitions - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/314 label: Add Lung type 1 and 2 epithelial cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/315 label: 'add parafollicular cell isa calcitonin secreting cell ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/316 label: Typos in def of CL:0000169 type B pancreatic cell? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/317 label: airway basal cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/318 label: enteroendocrine cell ; CL:0000164 definition - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/319 label: fixing the definition of epidermal cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/32 label: peripheral ganglia should have neruon that they are part of - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/320 label: fixing the definitions of trichogen and tormogen cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/321 label: Fix minor warnings - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/322 label: myoblasts, myotubes and myotubules - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/323 label: actinomycete-type spore - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/324 label: 'amniotic stem cell ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/325 label: 'NTR: lens epithelial cell ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/326 label: 'NTR: cholangiocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/327 label: CL is not DAG since rev. 1.50 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/328 label: circular logic - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/329 label: 'check devfrom: motor neuron and neural crest' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/33 label: Markers specified in comments only - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/330 label: 'NTR: endothelial stalk cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/331 label: autonomic neuron subtypes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/332 label: minor typo in CL:0002357 def - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/333 label: Retinal progenitor cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/334 label: 'NTR: tongue muscle cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/335 label: NTR H- and H+ - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/336 label: NTR H90 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/337 label: 'NTR: GNrH neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/338 label: tendon cell ; CL:0000388 definition - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/339 label: New terms for neuron types resubmitted - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/34 label: adding support for evidence codes to CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/340 label: CL:0000682 ! M cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/341 label: ' CL:0000419 ! seam cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/342 label: CL:0000372 ! tormogen cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/343 label: 'motor neurons ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/344 label: pericyte cell redundant name - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/345 label: CL:0000695 - cajal rtezius cell - add relationships - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/346 label: NTR Homozygous/heterozygous diploid - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/347 label: Suggested merge juxtaglomerular cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/348 label: 'NTR: endothelial progenitor cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/349 label: 'NTR: cardiovascular progenitor cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/35 label: use IAO replaced_by property for obsoletes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/350 label: cardiac neural crest cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/351 label: CL:0000746 ! A myocyte located in the heart. The contractile - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/352 label: CL:0000653 same as CL:1000451? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/353 label: CL:0002072 ! cardiac pacemaker cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/354 label: granule cell dubious Equivalent Class def - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/355 label: Not all GABAergic neurons are autonomic - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/356 label: upper level cell type coordination - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/357 label: 'NTRs: olfactory bulb cell types' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/358 label: syns for CL:0002489 ! double-negative T cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/359 label: 'NTR: parvocellular neurosecretory cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/36 label: 'Precursor B cell and immature B cell: inverted hierarchy in CL vs. GO' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/360 label: Remove leading uppercase from FMA-derived syns - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/361 label: 'NTR: Spiral ganglion' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/362 label: smooth muscle cell logical definitions - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/363 label: EBI's OBO Library (v1.18) won't parse cell.obo v1.54 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/364 label: 'NTR: glycinergic neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/365 label: 'NTR: mature dendritic cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/366 label: CL:0002520 ! nephrocyte - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/367 label: lymphangioblast terms (3 new, 1 synonym update) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/368 label: expand definition of "radial glilal cell" for teleosts - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/369 label: CL:0000432 ! reticular cell - definition - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/37 label: 'NTR: antigen-presenting cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/370 label: CL:0000561 amacrine cell taxon constraint - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/371 label: T cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/372 label: low/high plasma membrane amount subclass of membrane part? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/373 label: question about CL:0000478 ! oxytocin stimulating hormone sec - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/374 label: new epithelial cell types - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/375 label: 'obsoletion request: CL:0000122 ! stellate cell issues' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/376 label: 'Incorrect: CL:0000124 develops_from CL:0000340, not "is_a"' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/377 label: dash usage - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/378 label: duplicated relations - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/379 label: lacks_part and lacks_plasma_membrane_part - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/38 label: Add synonym to CL:0000020 spermatogonium - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/380 label: displaced (inverted) amacrine cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/381 label: 'NTR: sorocarp spore cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/382 label: 'NTR: chorionic trophoblast cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/383 label: hepatocyte logical definition & sinusoids - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/384 label: skeletal muscle satellite cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/385 label: merkel cell isa keratinocyte? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/386 label: Synonyms for cardiac muscle cell types - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/387 label: 'NTR: hippocampal interneuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/388 label: 'NTR: hippocampal pyramidal neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/389 label: prestalk I cell CL:0000277 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/39 label: CL:0000654 egg is_a CL:0000023 oocyte? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/390 label: 'NTR: prestalk U cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/391 label: galanergic neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/392 label: peripheral blood mononuclear cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/393 label: bone marrow mononuclear cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/394 label: Update defiition of erythroid progenitor cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/395 label: Update term name Kit-positive erythroid progenitor cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/396 label: epithelial cell of alveolus of lung - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/397 label: epithelial cell of umbilical artery - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/398 label: neural progenitor cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/399 label: fibroblast of skin of abdomen - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/4 label: 'Terms needing updating due to churn in PATO and GO Terms needing updating due to churn in PATO and GO ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/40 label: 'NTRs: kidney collecting duct cell types' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/400 label: Change term name "amniotic epithelial cell" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/401 label: Change term name cardiac fibroblast - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/402 label: stromal cell of bone marrow - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/403 label: embryonic fibroblast - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/404 label: Innate Lymphoid Cells Terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/405 label: Import PRO synonyms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/406 label: CL issue with two dbxrefs - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/407 label: large unstained cells (LUC) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/408 label: add pituitary cell as parent term - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/409 label: beige adipocyte - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/41 label: 'NTR: peripheral blood mononuclear cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/410 label: Request adding a synonym to CL term - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/411 label: follicular helper cell populations - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/412 label: Add a license - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/413 label: Use a consistent obo-namespace tag in obo format exports - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/414 label: Create README.md - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/415 label: 'NTR: midbrain dopaminergic neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/416 label: 'NTR: Early & Late cortical thymocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/417 label: 'NTR: keratinized cell of hair follicle' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/418 label: "NTR : B cell\u2013NK cell precursors" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/419 label: fixed incorrect ObjectProps, use improved method for creating ro_import - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/42 label: 'NTR: bone marrow mononuclear cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/420 label: add synonym to 'blood vessel endothelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/421 label: 'NTR: splenic B cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/422 label: 'NTR: fibroblast of breast' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/423 label: 'NTR: neurosphere' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/424 label: 'NTR: cortex-derived neurosphere' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/425 label: 'NTR: ganglionic eminence-derived neurosphere' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/426 label: Add design pattern for keratinized cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/427 label: 'no def for: acid secreting cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/428 label: monocyte is_a mononuclear cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/429 label: New OWL imports cause reasoners to fail building the class hierarchy - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/43 label: 'NTR: articular chondrocyte of knee joint' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/430 label: linking CL terms to UBERON terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/431 label: 'New Term: Neural Crest Cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/432 label: should "lung ciliated cell" be a type of "multi-ciliated epithelial cell" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/433 label: BFO class IRIs are in import chain, but lacking hierarchy or labels - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/434 label: Fix placement of 'bone marrow proteoglycan proteolytic cleavage product' in CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/435 label: CL:0000598 pyramidal cell, part_of relationship - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/436 label: Add 'skeletal muscle cell' synonym - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/437 label: "Please revise CL:0000019 \u2018sperm\u2019" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/438 label: Fix capitalization - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/439 label: Fix is_a edge between CL:0000457 and CL:0000163 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/44 label: Update definition for CL:0000038 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/440 label: Open tracheal system tracheal cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/441 label: granulocyte CL:0000094 logical definition - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/442 label: Adrenal medulla chromaffin cell infered hierachy - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/443 label: neutrophil CL:0000775 logical definition - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/444 label: Change build process, chebi download taking too long for travis - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/445 label: NTRs - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/446 label: Are APUD (amine precursor uptake and decarboxylation) cells always NC-derived? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/447 label: Cede fungal cell types to FAO - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/448 label: 'NTR: cancer cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/449 label: 'NTR: innate lymphoid cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/45 label: Update label for CL:0002000 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/450 label: Define design patterns using standard format - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/451 label: vestibular afferent neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/452 label: Update CL xrefs to species-specific AOs - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/453 label: cycle between band form neutrophil relationship and mature neutrophil - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/454 label: relabel zygote to 'animal zygote' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/455 label: 'unusual axiom: all animal cells have microvilli?' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/456 label: innate lymphoid cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/457 label: '''female germ cell'' not capable of oogenesis relationship' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/458 label: Exact synonym clashes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/459 label: Add taxon constraints for melanocytes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/46 label: 'NTR: epithelial cell of alveolus of lung' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/460 label: Add additional neuron types into CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/461 label: Innate lymphoid cell missing - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/462 label: New release? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/463 label: suppressor T lymphocyte in FMA is mapped to multiple CL classes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/464 label: Fixed xref for FMA supressor T lymphocyte - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/465 label: Fix annotation assertions to use correct properties - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/466 label: 'Fixed axiom annotation APs. ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/467 label: Ensure correct annotation properties are always used - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/468 label: CL redefines RO_0002161 as an ObjectProperty - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/469 label: Removing inconsistent declaration and incorrect axiom. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/47 label: 'NTR: epithelial cell of umbilical artery' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/470 label: Fix import generation - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/471 label: Definition update for CL_0000178 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/472 label: 'namespace and def APs were inverted. Fixed. See #467' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/473 label: 'Wrong field: comment labeled as synonym' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/474 label: Possible invalid axioms for 'mesenchymal stem cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/475 label: 'NTR: cardiac muscle progenitor cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/476 label: 'NTR: IMR-90 cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/477 label: 'NTR: HFF-Myc' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/478 label: 'NTR: annulus fibrosus cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/479 label: adipocyte (white/brown/beige) classification, definitions and axioms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/48 label: 'NTR: neural progenitor cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/480 label: namespace and def APs were inverted. Fixed. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/481 label: create mapping of CL to NCIt cell classes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/482 label: Describe usages of CL in OBO metadata page - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/483 label: lacks part relation - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/484 label: Add syns for D cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/485 label: CI Job for CL? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/486 label: Remove dicty-specific cell types - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/487 label: obsoleting classes in dicty - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/488 label: 'NTR: oligodendrocyte of the cerebral cortex' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/489 label: 'NTR: hippocampal oligodendrocyte precursor cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/49 label: 'NTR: fibroblast of skin of abdomen' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/490 label: 'NTR: hippocampal microglial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/491 label: 'NTR: hippocampal endothelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/492 label: 'NTR: microglial cell of the cerebral cortex' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/493 label: update the CL imports - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/494 label: New release - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/495 label: Distribute nif_import.owl in RDF/XML? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/496 label: No default-namespace in obo file header - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/497 label: Two term stanza do not have a name tag in the obo file - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/498 label: Faulty term ID in obo file for 'alobate nucleus' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/499 label: peripheral blood - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/5 label: names that are too broad for their definitions (ciliary epithelial cells) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/50 label: Change label CL:0002536 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/500 label: Fibro/adipogenic progenitors - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/501 label: Bad ZFA mappings - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/502 label: 'Add edge CL:0008001 is_a CL:0011115 ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/503 label: Add synonym 'Treg' for term CL:0000815 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/504 label: Add icon images from Reactome - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/505 label: Question regarding T cell terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/506 label: Add part_of edge between CL:0002321 and UBERON:0000922 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/507 label: Add is_a edge between CL:0000451 and CL:0000145 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/508 label: Stale branch recovery rbc - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/509 label: Add 'base' release product. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/51 label: Change label CL:0002548 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/510 label: Pre release - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/511 label: '"juxtaglomerular complex cell" is an unintuitive group' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/512 label: 'Proposal: obsolete meso/metanephros subtypes for many kidney cell types' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/513 label: KCD renal intercalated cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/514 label: renal interstitial pericyte - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/515 label: glomerular mesangial cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/516 label: kidney interstitial cell subtypes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/517 label: fibrocyte - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/518 label: suppressor macrophage - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/519 label: Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/52 label: 'NTR: stromal cell of bone marrow' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/520 label: Define strategy for handling new proposed cell types derived from clustering transcriptomic and other data - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/521 label: Tidy up cl-base and add relations to RO - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/522 label: Bladder terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/523 label: Mammary Gland terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/524 label: 'Add taxon contraints on cell types ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/525 label: 'NTR: gonadal somatic cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/526 label: Add is_a edge between CL:0000542 and CL:0000842 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/527 label: Dicty cells sneaking into top level of CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/528 label: Tidying top level, issue 527 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/529 label: Add is_a edge between CL:0002453 and CL:0011115 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/53 label: 'NTR: embryonic fibroblast' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/530 label: Add edges from CL:0001035 and CL:0000066 to CL:0002371 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/531 label: namespace assignment not consistent - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/532 label: Removed single PR axioms referring to an obsolete GO:0043234 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/533 label: Refactor cell ontology build pipeline to use ODK - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/534 label: Consider storing cell type-marker associations as TSV in this github repo - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/535 label: Update and rename abnormal.yaml to abnormalCell.yaml - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/536 label: Migrate pCL over to CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/537 label: issue with Protege and CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/538 label: Create secretory_cell_capable_of_X.yaml - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/539 label: Create secretory_cell_capable_of_X.yaml - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/54 label: 'NTR: fibroblast of upper leg skin' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/540 label: Create smooth_muscle_cell_part_of_X.yaml - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/541 label: Create X_capable_of_X.yaml - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/542 label: Create X_has_plasma_membrane_part_X.yaml - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/543 label: Create X_part_of_X.yaml - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/544 label: Create X_bearer_of_X.yaml - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/545 label: Create X_X_capable_of_X.yaml - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/546 label: Create epithelial_cell_part_of_X.yaml - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/547 label: Create fibroblast_part_of_X.yaml - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/548 label: Create glandular_epithelial_cell_part_of_X.yaml - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/549 label: Updating CL to new ODK (locking edit file 20.02.2019-21.02.2019) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/55 label: 'NTR: ibroblast of pedal digit skin' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/550 label: Retinal bipolar cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/551 label: Cleaned up cl-edit.owl a bit - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/552 label: ODK 1.2.2 upgrade - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/553 label: Import refreshed, removed rogue default class from definitions.owl - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/554 label: CL:0000636 and CL:0011107 should be merged - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/555 label: Fix newline in Xref causing literal `\n` to be written in `cl.obo` - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/556 label: Add new Cell Ontology terms and modify several existing terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/557 label: A few missing parents/synonyms and typos - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/558 label: Fixing ref violations - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/559 label: Correction of logical issues related to negation in CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/56 label: 'NTR: bladder microvascular endothelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/560 label: Redefine memory T cells in a functional manner - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/561 label: Add CL:0000235 is_a CL:0000842 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/562 label: Add edges from children of 'professional antigen presenting cell' (CL:0000145) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/563 label: Format problem in live data? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/564 label: Problem parsing cl-basic.obo - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/565 label: Update Makefile - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/566 label: Make fails when trying to build patterns - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/567 label: Release with simple/basic - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/568 label: Review what's been lost in moving to ODK - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/569 label: 1136514475 master - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/57 label: 'NTR: endothelial cell of coronary artery' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/570 label: cerebral cortex GABAergic interneuron relationship to cerebral cortex is inconsistent in definitions - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/571 label: cl-basic.owl has no annotations at all - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/572 label: Obsolete use of CP_ iris and replace by CL_ instead to avoid future clashes? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/573 label: Review loss of axioms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/574 label: is the def of male germ cell correct? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/575 label: Logical definition of spermatogonium uses an organismal quality - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/576 label: possible taxon constraint needed on 'leucocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/577 label: Tidy up github repo - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/578 label: 'Fixes #570' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/579 label: Release 09.08.2019 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/58 label: 'NTR: lung microvascular endothelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/580 label: add taxon constraint to leukocyte - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/581 label: Release file 12 09 19 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/582 label: Recovered class lost in a previous edit - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/583 label: CL:0000158 term name = CL:0007021 exact synonym - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/584 label: Current incompatibilities between CL, Uberon, and GO - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/587 label: sperm are not always ciliated - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/589 label: Please review CL:0000477 follicle cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/59 label: 'NTR: dermis blood vessel endothelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/590 label: 'NTR: resting CD4-positive, alpha-beta memory T cell and activated CD4-positive, alpha-beta memory T cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/591 label: change subclassOf assertion for 'germ line cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/592 label: remove logical definition from CL_0000019 sperm - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/593 label: Limited revision to B cell hierarchy and class definitions - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/594 label: Add synonyms for Tc1, Tc2, and Tc17 cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/595 label: Assorted fixes to logical definitions for hematopoietic cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/596 label: add def to 'follicle cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/597 label: add def to CL_0000477 (follicle cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/598 label: CL:0000334 query - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/599 label: Issue 557 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/6 label: Defining germ line cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/60 label: 'NTR: dermis lymphatic vessel endothelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/600 label: revise synonyms for CL_0007021 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/601 label: revise synonyms and add comment for CL_0002489 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/602 label: add text defs - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/603 label: add new term CL_0011018 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/604 label: obsolete CL:1000451 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/605 label: add synonym to CL_1001435 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/606 label: New release - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/607 label: Clean up reference to deprecated classes/relations - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/608 label: 'CL build fail ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/609 label: 'NTR: renal tubule epithelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/61 label: 'NTR: dermis microvascular lymphatic vessel endothelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/610 label: add new term CL_0011017 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/611 label: 'NTR: fibroblast of upper back skin and skin of back ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/612 label: 'NTR: splanchnic mesodermal cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/613 label: 'NTR: Pulmonary Ionocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/614 label: 'WIP: adding new cell type pulmonary ionocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/615 label: add synonym to CL_0002664 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/616 label: add new class CL_0011020 neural progenitor cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/617 label: Questions about stem cells and blast/progenitor cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/618 label: 'hematopoietic cell assorted fixes #595' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/619 label: 'adds synonyms for Tc1, Tc2, and Tc17 cells fixes #594' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/62 label: 'NTR: undifferentiated osteoblast' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/620 label: Neuroblasts - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/621 label: Question about naive B cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/622 label: 'B cell changes Fixes #593' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/623 label: 'memory T cell fixes #560' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/624 label: 'Added splanchnic mesodermal cell as requested in issue #612' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/625 label: 'New Term Request: decidual cell ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/626 label: 'New Term Request: decidual stromal cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/627 label: 'Synonym: liver sinusoidal endothelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/628 label: 'NTR: mural cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/629 label: NTR or synonym? villous cytotrophoblast - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/63 label: 'NTR: vein endothelial cell of the thigh' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/630 label: 'NTR: extravillous trophoblast cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/631 label: 'Please clarify what happened to the following terms:' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/632 label: evaluate report from OBO dashboard - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/633 label: NTR - decidual pericyte - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/634 label: Decidual cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/635 label: 'Fixes #628' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/636 label: Trophoblasts - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/637 label: 'Fixes #627' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/638 label: vagal neural crest cell -> Uberon vagal neural crest ? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/639 label: 'professional antigen presenting cells Fixes #562' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/64 label: 'NTR: striated muscle cell of pectoralis major' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/640 label: activated vs resting T-cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/641 label: 'Fixes certain logical errors #559' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/642 label: obsolete/merge natural helper lymphocyte - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/643 label: 'NTR: mesothelial cell of epicardium' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/644 label: Consistent indication of organism specificity of terms in CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/645 label: add new term CL_0011019 (mesothelial cell of epicardium) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/646 label: rename CL_0000477 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/647 label: add new terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/648 label: revise def for CL_1001572 (colon endothelial cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/649 label: CL terms with missing definitions - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/65 label: 'NTR: placental pericyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/650 label: Issue 632 lowercase definition - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/651 label: fix missing obsolete labels - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/652 label: add definitions - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/653 label: 'NTR: progenitor cell ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/654 label: NTRs based on SARS-CoV-2 entry factors paper - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/655 label: not all sperm are ciliated - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/656 label: NTR - tracheobronchial goblet cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/657 label: NTR - tracheobronchial chondrocyte - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/658 label: tracheobronchial serous cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/659 label: Tracheobronchial tree cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/66 label: 'NTR: mesenchymal stem cell of femoral bone marrow' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/660 label: 'add synonym: unswitched memory B cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/661 label: add synonym to 'unswitched memory B cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/662 label: 'NTR: CD25+ Mast cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/663 label: 'NTR: exhausted T cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/664 label: add new term CL_0011023 (CD25+ mast cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/665 label: '[NTR] double negative T regulatory cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/666 label: '[NTR] CD3+ T cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/667 label: '[NTR] tracheobronchial fibroblast' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/668 label: '[NTR] fibroblast of interalveolar septum' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/669 label: '[NTR] tracheobronchial smooth muscle cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/67 label: 'NTR: mesenchymal stem cell of abdominal adipose' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/670 label: '[NTR] blood vessel smooth muscle cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/671 label: '[NTR] mucosa-associated lymphoid tissue lymphocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/672 label: '[NTR] bronchial-associated lymphoid tissue lymphocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/673 label: '[NTR] interalveolar septum lymphocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/674 label: '[NTR] lymphatic vessel smooth muscle cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/675 label: '[NTR] gut-associated lymphoid tissue lymphocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/676 label: '[NTR] alveolar wall monocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/677 label: '[NTR] interalveolar septum eosinophil' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/678 label: '[NTR] interalveolar septum neutrophil' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/679 label: '[NTR] interalveolar septum mast cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/68 label: 'NTR: melanocyte of skin of face' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/680 label: '[NTR] interalveolar septum plasma cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/681 label: add title - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/682 label: add CL_0011024 (double negative T regulatory cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/683 label: add new term CL_0011025 (exhausted T cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/684 label: add description - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/685 label: Resources for new users - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/686 label: add new term CL_0011026 progenitor cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/687 label: Lung cell types - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/688 label: '[NTR] migratory muscle precursor ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/689 label: Adding immune cell terms; also adding a new template based pipeline to CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/69 label: 'NTR: melanocyte of foreskin' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/690 label: Updated CL to new ODK 1.22 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/691 label: Revise definitions for CP_0000000 and CP_0000027 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/692 label: fixing errors in the cl-edit file - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/693 label: '[NTR] Lysosome-Rich Enterocytes' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/694 label: Fix overspecified and problematic OWL definitions for non-leaf classes in immune cell branch - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/695 label: 'Proposed rule: species-specific marker-defined cells should use species-specific PRO IDs of the same species' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/696 label: R1 photoreceptor cell is connected to generic eye, should b part of ommatidium - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/697 label: '[NTR] small/intrahepatic and large/extraheptaic cholangiocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/698 label: "[NTR] CD56-high\_natural killer cells" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/699 label: '[NTR] three subtypes of hepatocytes: periportal, intermediary, and perivenous' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/7 label: enucleate and anucleate - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/70 label: 'NTR: hair follicle dermal papilla cell of scalp' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/700 label: Reference CL in Wikidata items about cell types - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/701 label: '[NTR] endothelial cells of periportal and perivenous hepatic sinusoid' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/702 label: Question regarding markers that only show up with a single type of plasma membrane usage - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/703 label: Create cellPartOfAnatomicalEntity.yaml - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/704 label: Create cellCapableOfBiologicalProcess.yaml - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/705 label: add subclass Of axiom to 'R1 photoreceptor cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/706 label: Migrate taxon constraints from GO to CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/707 label: Add obvious taxon constraints - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/708 label: '[Obsolete] apoptosis fated cell, scaffold cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/709 label: Uberon and GO imports should bring in taxon axioms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/71 label: Switch neuronal NT specification to capable_of relationship to GO NT secretion term - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/710 label: Develop strategy for insect cells in CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/711 label: Review phagocyte branch for non-vertebrates - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/712 label: Makefile fails for building imports - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/713 label: Document Design Patterns for Taxon Constraints in CL edit guide - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/714 label: neuronal stem cell logical definition is wrong - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/715 label: obsolete glial cell sensu X - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/716 label: 'WIP: Taxon Constraints, #707' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/717 label: add ncbi taxon back to CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/718 label: 'Ready for review: add patterns' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/719 label: '[Obsolete] anatomy specific native cell classes' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/72 label: 'Review request: basic muscle cell hierarchy' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/720 label: 'obsolete grouping class: metabolising cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/721 label: '[Logical def] neural cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/722 label: Should prokaryote cells be in CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/723 label: 'WIP: More TCs. #707' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/724 label: Rename and define 'receptor cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/725 label: "obsolete glial cell (sensu Nematoda and Protostomia) and glial cell (\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/726 label: 'Review: valve cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/727 label: obsolete anatomy specific native cell classes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/728 label: obsolete metabolising cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/729 label: add text def and logical def to CL_0000197 (receptor cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/73 label: Improve goblet cell subtypes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/730 label: rename anatomy specific native cell classes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/731 label: Convert MSC axioms to species GCI - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/732 label: '[NTR] anterior horn cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/733 label: add new class CL_0100183 (muscle migratory precursor cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/734 label: obsolete 'lobed nucleus' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/735 label: 'Fixes #734' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/736 label: Update README.md - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/737 label: Add alpha motor neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/738 label: Add gamma motor neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/739 label: Add beta motor neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/74 label: Need reticulospinal neurons added to CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/740 label: Anterior horn motor neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/741 label: 'NTR: lower motor neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/742 label: NTR intrafusal muscle fiber - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/743 label: NTR extrafusal muscle fiber - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/744 label: '[NTR] lower motor neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/745 label: Delete README.txt - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/746 label: Motor neuron classification cleanup - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/747 label: Create relations_guide.md - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/748 label: Added Major skeletal muscle fiber subtypes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/749 label: '[Typo/Bug] Gial cells not classified' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/75 label: remove in appropriate Schwann cell syns - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/750 label: 'NTR: Upper motor neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/751 label: Formalise classification of Pyramidal neurons - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/752 label: Review motor neuron classes from ZFA - position in classification. - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/753 label: Filter APs on imports - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/754 label: First draft of annotation filtering - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/755 label: Extrahepatic Bile Duct Epithelial Cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/756 label: 'WIP: Issue 709 uberon base' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/757 label: neuron develops-from some vertebrate neuroblast leads to incoherency - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/758 label: 'converting neuron development link to a GCI, fixes #757' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/759 label: Cleaned up unused APs and merged some non-standard APs - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/76 label: relabel 'phenotype' classes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/760 label: add term MONDO_0100198 (extrafusal muscle fiber) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/761 label: '[NTR] testing123' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/762 label: Add term testing_123 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/763 label: ADD QC check that checks whether a new class added is in the CL ID space - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/764 label: '[NTR] Axl+ dendritic cell, human' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/765 label: Test commit to branch - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/766 label: 'ntr: Add Axl+ DC (human)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/767 label: Upper motor neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/768 label: adding a test class - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/769 label: Release 02102020 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/77 label: '"lacks" relations as object properties (between individuals) are not meaningful:' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/770 label: '[NTR] skeletal muscle fibroblast' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/771 label: "add new class CL_00000000000000000000000000000000000000004012501 (mus\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/772 label: '[Typo/Bug] Broken link in OBO Foundry Cell Ontology page' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/773 label: add new classes CL_4006000 (fibroblast of breast) CL_4006001 (fibroblast skin of scalp) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/774 label: Add part_of brain to CL_0000598 (pyramidal neuron) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/775 label: Liver cell types - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/776 label: '[Typo/Bug] Typo in def of CL:0005026 ''hepatoblast''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/777 label: Fix typo in CL:0005026 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/778 label: '[Logical def] Tighten up definition of Betz cell to restrict to layer 5?' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/779 label: '[NTR] grouping term for small and large intestine goblet cells' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/78 label: Dispositional meaning implicitly embedded in the object property, produces wrong existential assertions - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/780 label: '[NTR] intestinal tuft cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/781 label: Release 2020-10-19 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/782 label: '[Typo/Bug] Insane GCI' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/783 label: 'Fixes #782' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/784 label: Intestine cells - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/785 label: '[Synonym] multiciliated cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/786 label: '[NTR] zygote' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/787 label: '[NTR]: paneth cell of epithelium of large intestine' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/788 label: '[NTR]: transit amplifying cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/789 label: '[NTR]: transit amplifying cell of large intestine' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/79 label: 'NTR: intestinal stem cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/790 label: '[NTR]: transit amplifying cell of small intestine' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/791 label: '[NTR]: tuft cell of small intestine' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/792 label: '[NTR]: tuft cell of large intestine' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/793 label: '[NTR]: stromal cell of lamina propria of large intestine' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/794 label: '[NTR]: stromal cell of lamina propria of small intestine' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/795 label: '[NTR]: Peyer''s patch T cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/796 label: Add cl-training to README - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/797 label: Add synonym for multicilated cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/798 label: '[NTR]: mesothelial cell of small intestine' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/799 label: '[NTR]: mesothelial cell of large intestine' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/8 label: PATO differentium for non-terminallly differentiated cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/80 label: progenitor cell of endocrine pancreas is not a stem cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/800 label: 'Review: hepatoblast and hepatic stem cell terms' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/801 label: Cl release - cl.owl to cl-full - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/802 label: Update ODK to 1.2.4 and switch to cl-full - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/803 label: Added preferred roots and releasing cl.owl as cl-full - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/804 label: embryonic cell is-a animal cell doesn't work for plants - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/805 label: Axiomatize animal cell, fungal cell, etc - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/806 label: Adding generic zygote and various taxon fixes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/807 label: 'removing cruft from DPs #450' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/808 label: Update cl-edit.owl - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/809 label: 'NTR: Peyer''s patch lymphocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/81 label: Add syns and xrefs for subtypes of glomerular visceral epithelial cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/810 label: 'NTR: Peyer''s patch follicular dendritic cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/811 label: 'NTR: gastrointestinal tract (lamina propria) macrophage of small intestine' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/812 label: 'NTR: crypt stem cell of large intestine' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/813 label: 'NTR: crypt stem cell of small intestine' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/814 label: 'NTR: lymphocyte of large intestine lamina propria ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/815 label: Decide on when to use 'located_in' vs 'part of' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/816 label: Cell state - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/817 label: '[NTR] Import BTO term BTO_0002771 "olfactory ensheathing cell"' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/818 label: '[Class hierarchy]' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/819 label: normalize cl-edit.owl - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/82 label: 'NTRs: sympathetic & parasympathetic neuron ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/820 label: obsolete scaffold cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/821 label: remove subclassOf axiom from 'germ cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/822 label: add new term CL_0011027 (skeletal muscle fibroblast) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/823 label: add new term CL_0011028 (olfactory ensheathing cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/824 label: '[NTR] nephrogenic zone cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/825 label: Review CL terms created for HCA/SCA - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/826 label: Add subset for HCA - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/827 label: Epic - addition of pan-cortical cell types for Brain Initiative - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/828 label: 'EPIC: Add Patch-seq and connectivity type grouping cell types for mouse motor cortex' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/829 label: Add new subset CL_0009008 (added_for_HCA) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/83 label: contains deprecated PATO terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/830 label: Add CL_0009009 (paneth cell of epithelium of large intestine) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/831 label: "Add CL_0009010, CL_0009011 and CL_0009012 (transit amplifying cell ty\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/832 label: analogous cell types in human and mouse - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/833 label: Add new class CL_0009014 (Peyer's patch lymphocyte) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/834 label: Add new class CL_0009015 (Peyer's patch follicular dendritic cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/835 label: "Add new classes CL_0009016 (intestinal crypt stem cell of large intes\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/836 label: Add new class CL_0009018 (lymphocyte of large intestine lamina propria) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/837 label: Add new class CL_0009019 (nephrogenic zone cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/838 label: '[Text def] myeloid dendritic cell AND conventional dendritic cell, to merge?' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/839 label: '''CL:0000784 (plasmacytoid dendritic cell) should not have synonym ''DC2'', ''type 2 DC''' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/84 label: same label with two IRIs - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/840 label: '[NTR] fetal hepatobiliary progenitor cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/841 label: '[Typo/Bug] Multiple labels for cell and neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/842 label: updated logical definitions on GO terms [Typo/Bug] - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/843 label: Update cl-edit.owl - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/844 label: Update cl-idranges.owl - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/845 label: 'Added beta motor neurons and subclasses #739' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/846 label: Paolaroncaglia issue 787 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/847 label: Paolaroncaglia issues 788 789 790 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/848 label: Add spindle component 'nuclear chain fiber' and 'nuclear bag fiber' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/849 label: Paolaroncaglia issue 809 take2 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/85 label: '''T cell receptor co-receptor CD8'' under OWL:Thing ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/850 label: Paolaroncaglia issues 812 813 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/851 label: '[NTR] CD4+ TEMRA' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/852 label: Add CL:00001087 CD4+ TEMRA - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/853 label: Added subclasses of intrafusal muscle - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/854 label: Add sensory fibers - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/855 label: 'Recreation of cl-edit.owl from #775 PR' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/856 label: Added subclass of gamma motor neurons - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/857 label: Retrofit term definitions using CP terms to use GO CC + PATO - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/858 label: release v2020-01-20 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/859 label: '[NTR] Alpha 7 Cell (mus MOp)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/86 label: hepatoblast are not cholangiocytes - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/860 label: '[NTR] Lamp5 GABAergic Interneuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/861 label: Added Lamp5 and alpha7 cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/862 label: '[NTR] Canopy Cell (Mus MOp)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/863 label: '[NTR] L5,6 Neurogliaform Lamp5 (Mus MOp)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/864 label: '[NTR] NGC Lamp5 (Mus MOp)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/865 label: '[NTR] Sncg GABAergic Interneuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/866 label: '[NTR] Vip GABAergic Interneuron ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/867 label: '[NTR] Sst GABAergic Interneuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/868 label: '[NTR] Pvalb GABAergic Interneuron ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/869 label: '[NTR] Long-projecting Sst Cell (Mus MOp)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/87 label: Refactor ontology to use imports - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/870 label: '[NTR] L5 T Martinotti Cell (Mus MOp)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/871 label: '[NTR] L5 Non-Martinotti Cell (Mus MOp)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/872 label: '[NTR] L4 Sst cell (Mus MOp)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/873 label: '[NTR] L2/3/5 Fan Martinotti Cell (Mus MOp)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/874 label: '[NTR] L2/3 PV-like cell (Mus MOp)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/876 label: '[NTR] Upper FS Basket cell (Mus MOp)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/877 label: '[NTR] Chandelier cell (Mus MOp)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/878 label: '[NTR] L2/3-6 Intratelencephalic Projecting Glutamatergic Neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/879 label: '[NTR] L5 Extratelencephalic projecting glutamatergic neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/88 label: Notochord cells New term proposal/request - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/880 label: '[NTR] L6 CT glutamatergic neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/881 label: '[NTR] L6b glutamatergic neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/882 label: '[NTR] Near-Projecting glutamatergic neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/883 label: '[NTR] L2/3 IT (Mus MOp)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/884 label: '[NTR]L4 IT (Mus MOp)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/885 label: '[NTR] L4/5 IT (Mus MOp)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/886 label: '[NTR] L5 IT (Mus MOp)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/887 label: '[NTR] L6 IT (Mus MOp)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/888 label: '[NTR] MY ET (Mus MOp)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/889 label: '[NTR] non-MY ET (Mus MOp)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/89 label: Please add GO terms to file for use in definitions - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/890 label: '[NTR] Corticothalamic VAL/VM Projecting (Mus MOp)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/891 label: '[NTR] L6b subplate (Mus MOp)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/892 label: Corrections on release v2020-01-20 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/893 label: Change synonym_type IRIs to follow Uberon base where possible - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/894 label: Sncg GABAergic Interneuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/895 label: Added Vip GABAergic Interneuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/896 label: Added sst GABAergic Interneuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/897 label: Added pvalb GABAergic interneuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/898 label: Canopy cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/899 label: 'Bug fix: current release has inferred equivalencies (added check)' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/9 label: Disjointness violation for luteal cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/90 label: CD45RO not associated with any lymphocytes? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/900 label: Add support for Ensembl IDs - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/901 label: Add ensembl import - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/902 label: '[NTR]: mantle zone B cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/903 label: '[NTR]: mantle zone B cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/904 label: 'Added Canopy Cell ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/905 label: Added L5,6 NGC - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/906 label: Added NGC Lamp5 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/907 label: Added LT SST Cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/908 label: Added L5 T Martinotti Cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/909 label: Added L5 T Martinotti SST - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/91 label: skeletal muscle cells & insects - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/910 label: Added L5 Non-martinotti SST - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/911 label: Added L4 SST MOp - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/912 label: Added L2/3/5 Fan Martinotti SST - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/913 label: Added L4 Sst cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/914 label: Added L6 FS Large sag PV - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/915 label: Added Upper FS BC PV MOp - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/916 label: '[NTR] Add subclass based on morphology for PV-like cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/917 label: 'Added L2/3 PV-like SST ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/918 label: New CL release - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/919 label: Duplicate definition sncg GABAergic cortical interneuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/92 label: redefine striated muscle and add new terms for invertebrate muscle types - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/920 label: Added Upper FS BC PV - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/921 label: Fixing 'xref' error - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/922 label: Added Chandelier PV - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/923 label: Update a_adding_term.md - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/924 label: '[NTR] immunoblast' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/925 label: '[NTR] L2/3 Bipolar Vip Cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/926 label: Added L2/3 bipolar Vip - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/927 label: '[NTR] 5 cell types for the Single Cell Expression Atlas' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/928 label: Subset tag for BDS - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/929 label: Add BDS subset tag to terms added for Brain Data Standards project - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/93 label: lacks part issues - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/930 label: '[Typo/Bug] CL:4023011 has malformed xref tag' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/931 label: Fix several untyped `ILX` cross-references causing syntax errors in OBO release - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/932 label: '[NTR] several cell type terms to replace EFO terms' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/933 label: Generalise MOp interneurons to general cortical - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/934 label: Added upper classes for excitatory neurons - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/935 label: B cell has two definitions - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/936 label: Changed MOp interneurons to more generalized cortical - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/937 label: Added BDS tag to interneurons - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/938 label: Update ODK 1.2.6 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/939 label: 'B cell issues Fixes #935' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/94 label: should 'nucleate cell' be abandoned as unsustainable? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/940 label: Create presentations.md - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/941 label: Update cl-odk.yaml - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/942 label: '[NTR] L5/6 CCK cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/943 label: Added L5/6 CCK Vip - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/944 label: '[NTR] L5 Vip cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/945 label: Added L5 Vip - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/946 label: Update README.md - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/947 label: "Revise CL_0000865 (gastrointestinal tract (lamina propria) macrophage\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/948 label: '[NTR] L5/6 non-Martinotti cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/949 label: Added L5/6 Non-martinotti SST - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/95 label: rename 'skeletal muscle cell' to 'cell of skeletal muscle' ?? - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/950 label: '[NTR] Add grouping terms for neuronal morphology classes & formalise definitions of subclasses' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/951 label: Added L6b glutamatergic neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/952 label: Document strategy for genes in CL - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/953 label: Fix dbxrefs and add subset tag for CL_0009019 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/954 label: '[Typo/Bug] Fix dbxrefs and subset tags for terms I created previously' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/955 label: Fix def dbxrefs and subset tags for a few terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/956 label: Configure repo for mkdocs - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/957 label: Using mkdocs - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/958 label: Added (Mus musculus) to interneurons - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/959 label: EPIC - Clean up CL editor documentation - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/96 label: 'NTR: trophoblast glycogen cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/960 label: Changed Ensembl to Pro - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/961 label: Add HCA subset to 7 terms created previously - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/962 label: Changed Ensembl to Pro through proper import - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/963 label: Assert taxon - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/964 label: Add CL_0009020 (fetal hepatobiliary progenitor cell) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/965 label: Add 5 classes to replace EFO cell type terms - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/966 label: '[NTR] Meis2 cortical GABAergic ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/967 label: '[NTR] vascular leptomeningeal cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/968 label: Added VLMC - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/969 label: L2/3-6 IT projecting neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/97 label: stem cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/970 label: L5 ET neuron - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/971 label: Added L6 CT - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/972 label: '[NTR]: enteroendocrine cell of small intestine ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/973 label: '[NTR]: gastrointestinal tract (lamina propria) lymphocyte of small intestine' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/974 label: '[NTR]: smooth muscle cell of high endothelial venule' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/975 label: '[Synonym]: marginal zone B cell of lymph node' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/976 label: Added meis2 expressing GABAergic cell - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/977 label: '[NTR] esophagus nonkeratinized squamous epithelial cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/978 label: adding esophagus nonkeratinized squamous epithelial cell (#977) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/979 label: '[NTR] embryonic skeletal muscle fiber and neonatal skeletal muscle fiber' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/98 label: CL:0000645 pituitcyte - issues - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/980 label: Added non-MY ET MOp (Mus) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/981 label: Added MY ET MOp - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/982 label: Removing wrong labels for pvalb, snc, sst, vip, lamp5 - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/983 label: Added CT VAL/VM MOp (Mus) - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/984 label: 'Adding "in mouse" to defs that need it (BDS cells) ' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/985 label: "adding embryonic and fetal/neonatal skeletal muscle fibers; adding ne\u2026" - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/986 label: Update cellPartOfAnatomicalEntity.yaml - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/987 label: '[NTR]: germinal center T cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/988 label: '[NTR]: paracortex T cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/989 label: '[Class hierarchy]: lymph node tingible body macrophage' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/99 label: '[NTR] somatosensory neuron & trigeminal neuron' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/990 label: '[Class hierarchy]: plasma cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/991 label: CL:0000446, chief cell of parathyroid gland - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/992 label: '[NTR]: medullary plasma cell' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/993 label: '[Class hierarchy]: lymphocyte' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/994 label: '[NTR]tuft cell of appendix' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/995 label: '[NTR]enterocyte of appendix' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/996 label: '[NTR]transit amplifying cell of appendix' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/997 label: '[NTR] activated T-cell subtypes' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/998 label: '[NTR]intestinal crypt stem cell of appendix' - id: https://api.github.com/repos/obophenotype/cell-ontology/issues/999 label: '[NTR]mesothelial cell of appendix' embeddings: null