dataset: name: gh_obi embeddings_frame: null embedding_model: name: 'openai:' objects: - id: https://api.github.com/repos/obi-ontology/obi/issues/1 label: manufacturer_role - id: https://api.github.com/repos/obi-ontology/obi/issues/10 label: hospital - id: https://api.github.com/repos/obi-ontology/obi/issues/100 label: hybridized microarray - id: https://api.github.com/repos/obi-ontology/obi/issues/1000 label: 'NTR: magnetoencephalography' - id: https://api.github.com/repos/obi-ontology/obi/issues/1001 label: Consider coordinating with Wikipedia - id: https://api.github.com/repos/obi-ontology/obi/issues/1002 label: 'Synonym request for specimen collection process ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1003 label: Fix label whitespace - id: https://api.github.com/repos/obi-ontology/obi/issues/1004 label: Generate definitions for instances with duplicate (or missing) definitions - id: https://api.github.com/repos/obi-ontology/obi/issues/1005 label: chmo status - id: https://api.github.com/repos/obi-ontology/obi/issues/1006 label: 'add flow cytometry terms such as forward- and side-scatter ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1007 label: add terms for flow cytometry gating definitions based on dyes - id: https://api.github.com/repos/obi-ontology/obi/issues/1008 label: 'add synonyms to OBI_0000744:material sampling process #1002' - id: https://api.github.com/repos/obi-ontology/obi/issues/1009 label: 'NTR: disease specific study design' - id: https://api.github.com/repos/obi-ontology/obi/issues/101 label: dependent and independent variables - id: https://api.github.com/repos/obi-ontology/obi/issues/1010 label: 'NTR: birth cohort study design' - id: https://api.github.com/repos/obi-ontology/obi/issues/1011 label: '"has unit" object property' - id: https://api.github.com/repos/obi-ontology/obi/issues/1012 label: OBI home PURL broken? - id: https://api.github.com/repos/obi-ontology/obi/issues/1013 label: Attempting to understand the difference between sample and specimen - id: https://api.github.com/repos/obi-ontology/obi/issues/1014 label: Change name of material processing / processed material - id: https://api.github.com/repos/obi-ontology/obi/issues/1015 label: Reagent Ontology (REO) has disappeared - id: https://api.github.com/repos/obi-ontology/obi/issues/1016 label: Move Uberon imports to separate module and update - id: https://api.github.com/repos/obi-ontology/obi/issues/1017 label: Swabspecimen - id: https://api.github.com/repos/obi-ontology/obi/issues/1018 label: 'Add swab specimens per #910' - id: https://api.github.com/repos/obi-ontology/obi/issues/1019 label: 'NTR: FFPE specimen' - id: https://api.github.com/repos/obi-ontology/obi/issues/102 label: vector role (cloning and disease) - id: https://api.github.com/repos/obi-ontology/obi/issues/1020 label: 'NTR: medication dose' - id: https://api.github.com/repos/obi-ontology/obi/issues/1021 label: 'NTR: medication timepoint' - id: https://api.github.com/repos/obi-ontology/obi/issues/1022 label: 'NTR: bacteriological assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1023 label: 'NTR: genealogical record' - id: https://api.github.com/repos/obi-ontology/obi/issues/1024 label: 'added FFPE class from #1019' - id: https://api.github.com/repos/obi-ontology/obi/issues/1025 label: "Proposal for a new \u201Chas textual representation\u201D data property" - id: https://api.github.com/repos/obi-ontology/obi/issues/1026 label: Fix pato import - id: https://api.github.com/repos/obi-ontology/obi/issues/1027 label: Terms inferred as owl:Nothing - id: https://api.github.com/repos/obi-ontology/obi/issues/1028 label: Fix owl:Nothing reasoning - id: https://api.github.com/repos/obi-ontology/obi/issues/1029 label: Update ROBOT version in Makefile - id: https://api.github.com/repos/obi-ontology/obi/issues/103 label: old objective related terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1030 label: Add new release candidate 2019-06-05 - id: https://api.github.com/repos/obi-ontology/obi/issues/1031 label: 'NTRs: national registry and national biomedical registry' - id: https://api.github.com/repos/obi-ontology/obi/issues/1032 label: Typo in "training objective"? - id: https://api.github.com/repos/obi-ontology/obi/issues/1033 label: Relation of having an objective - id: https://api.github.com/repos/obi-ontology/obi/issues/1034 label: Typo in definition of "achieved by"? - id: https://api.github.com/repos/obi-ontology/obi/issues/1035 label: Add MIABIS-requested terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1036 label: 'NTR: ribosomal RNA depleted RNA extract' - id: https://api.github.com/repos/obi-ontology/obi/issues/1037 label: 'NTR: Case and control participant roles' - id: https://api.github.com/repos/obi-ontology/obi/issues/1038 label: '''oral administration'' logical definition does not match textual definition' - id: https://api.github.com/repos/obi-ontology/obi/issues/1039 label: Fix some typos - id: https://api.github.com/repos/obi-ontology/obi/issues/104 label: function branch - id: https://api.github.com/repos/obi-ontology/obi/issues/1040 label: Has representation data property - id: https://api.github.com/repos/obi-ontology/obi/issues/1041 label: New "process start date" and "process end date" data items - id: https://api.github.com/repos/obi-ontology/obi/issues/1042 label: differential medium assay - id: https://api.github.com/repos/obi-ontology/obi/issues/1043 label: Incorrect equivalence axiom for 'data transformation' - id: https://api.github.com/repos/obi-ontology/obi/issues/1044 label: Fix 'data transformation' axiom - id: https://api.github.com/repos/obi-ontology/obi/issues/1045 label: Consider putting 'has specified input' under RO 'has input' - id: https://api.github.com/repos/obi-ontology/obi/issues/1046 label: Some recommendations for OBI github/website/obo page to enhance usability - id: https://api.github.com/repos/obi-ontology/obi/issues/1047 label: Add introduction to README - id: https://api.github.com/repos/obi-ontology/obi/issues/1048 label: Add OBO format product - id: https://api.github.com/repos/obi-ontology/obi/issues/1049 label: Add new release candidate 2019-08-06 - id: https://api.github.com/repos/obi-ontology/obi/issues/105 label: PBS buffer in manuscript - id: https://api.github.com/repos/obi-ontology/obi/issues/1050 label: unsatisfiable class OBI:comment on investigation - id: https://api.github.com/repos/obi-ontology/obi/issues/1051 label: OBI should use more disjointness axioms in the release process - id: https://api.github.com/repos/obi-ontology/obi/issues/1052 label: Improve OBI documentation - id: https://api.github.com/repos/obi-ontology/obi/issues/1053 label: 'updated logical axiom of term OBI_0001898, issue #1050' - id: https://api.github.com/repos/obi-ontology/obi/issues/1054 label: 'Resolves issue 1036: NTR: ribosomal RNA depleted RNA extract' - id: https://api.github.com/repos/obi-ontology/obi/issues/1055 label: 'Edit re: issue #1038' - id: https://api.github.com/repos/obi-ontology/obi/issues/1056 label: 'NTR: whole metagenome sequencing assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1057 label: Need class to describe an RNAi experiment - id: https://api.github.com/repos/obi-ontology/obi/issues/1058 label: 'NTRs: mutagenesis terms' - id: https://api.github.com/repos/obi-ontology/obi/issues/1059 label: 'NTRs: reconstitution assays' - id: https://api.github.com/repos/obi-ontology/obi/issues/106 label: terms from MIRO - id: https://api.github.com/repos/obi-ontology/obi/issues/1060 label: Add NTRs for ECO - id: https://api.github.com/repos/obi-ontology/obi/issues/1061 label: Jwj20191008 - id: https://api.github.com/repos/obi-ontology/obi/issues/1062 label: In assays.tsv, "analyte" column should be "measurand" column - id: https://api.github.com/repos/obi-ontology/obi/issues/1063 label: 'NTR: entomological collection date value specification' - id: https://api.github.com/repos/obi-ontology/obi/issues/1064 label: 'NTR: blood microbiology assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1065 label: Add 'RNAi knockdown assay' and related terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1066 label: Add check for invalid IRIs - id: https://api.github.com/repos/obi-ontology/obi/issues/1067 label: Issue with 'trial statistician role' axiom - id: https://api.github.com/repos/obi-ontology/obi/issues/1068 label: '[WIP] Create an integration test' - id: https://api.github.com/repos/obi-ontology/obi/issues/1069 label: 'NTR: Illumina NovaSeq 6000 Sequencing Platform ' - id: https://api.github.com/repos/obi-ontology/obi/issues/107 label: stimulation/inhibition/dosage titration - id: https://api.github.com/repos/obi-ontology/obi/issues/1070 label: 'Resolves NTR: direct RNA sequencing assay Issue #874' - id: https://api.github.com/repos/obi-ontology/obi/issues/1071 label: Add direct RNA sequencing assay - id: https://api.github.com/repos/obi-ontology/obi/issues/1072 label: 'NTR: biopsy' - id: https://api.github.com/repos/obi-ontology/obi/issues/1073 label: Fix trial statistician role axiom - id: https://api.github.com/repos/obi-ontology/obi/issues/1074 label: Berrios - id: https://api.github.com/repos/obi-ontology/obi/issues/1075 label: 'Add a device and an assay, resolves #1069' - id: https://api.github.com/repos/obi-ontology/obi/issues/1076 label: Run DL queries on `obi-edit.owl` to block templated branches - id: https://api.github.com/repos/obi-ontology/obi/issues/1077 label: Module violation test - id: https://api.github.com/repos/obi-ontology/obi/issues/1078 label: Move all study designs to template - id: https://api.github.com/repos/obi-ontology/obi/issues/1079 label: Fixes from assays.tsv validation - id: https://api.github.com/repos/obi-ontology/obi/issues/108 label: c-means - id: https://api.github.com/repos/obi-ontology/obi/issues/1080 label: Release Candidate 2019-11-12 - id: https://api.github.com/repos/obi-ontology/obi/issues/1081 label: '[WIP] Adding several adoptive transfer assays for IEDB' - id: https://api.github.com/repos/obi-ontology/obi/issues/1082 label: Collected ENCODE and RNAseq issues - id: https://api.github.com/repos/obi-ontology/obi/issues/1083 label: 'NTR: blood microbiology assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1084 label: 'NTRs: artificially induced biological processes' - id: https://api.github.com/repos/obi-ontology/obi/issues/1085 label: 'NTR: perturbation' - id: https://api.github.com/repos/obi-ontology/obi/issues/1086 label: 'NTR: Oxford Nanopore Sequencing Platforms' - id: https://api.github.com/repos/obi-ontology/obi/issues/1087 label: 'Circulome-seq as a synonym for OBI:0002144, #872' - id: https://api.github.com/repos/obi-ontology/obi/issues/1088 label: 'polyA+ & polyA- RNA-seq distinctions #863' - id: https://api.github.com/repos/obi-ontology/obi/issues/1089 label: 'NTR: biological variation design' - id: https://api.github.com/repos/obi-ontology/obi/issues/109 label: fuzzy clustering - id: https://api.github.com/repos/obi-ontology/obi/issues/1090 label: 'NTR: population based design' - id: https://api.github.com/repos/obi-ontology/obi/issues/1091 label: 'NTRs: document related publication' - id: https://api.github.com/repos/obi-ontology/obi/issues/1092 label: 'NTR: individual organism specimen' - id: https://api.github.com/repos/obi-ontology/obi/issues/1093 label: 'NTR: Giemsa stain assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1094 label: 'NTR: number of generations' - id: https://api.github.com/repos/obi-ontology/obi/issues/1095 label: 'NTR: RNA extraction with rRNA depletion (process)' - id: https://api.github.com/repos/obi-ontology/obi/issues/1096 label: 'NTR: duration time of insecticide exposure' - id: https://api.github.com/repos/obi-ontology/obi/issues/1097 label: 'NTRs: karyotype related' - id: https://api.github.com/repos/obi-ontology/obi/issues/1098 label: 'NTR: amplicon sequencing' - id: https://api.github.com/repos/obi-ontology/obi/issues/1099 label: responsible party role definition update - id: https://api.github.com/repos/obi-ontology/obi/issues/11 label: microarray (DNA microarray) - id: https://api.github.com/repos/obi-ontology/obi/issues/110 label: B transformation - id: https://api.github.com/repos/obi-ontology/obi/issues/1100 label: Berrios nov519 - id: https://api.github.com/repos/obi-ontology/obi/issues/1101 label: 'NTR: MPRA (massively parallel reporter assay)' - id: https://api.github.com/repos/obi-ontology/obi/issues/1102 label: 'NTR: PRO-cap' - id: https://api.github.com/repos/obi-ontology/obi/issues/1103 label: 'The phrase "processual entity" in the definition for OBI: planned process' - id: https://api.github.com/repos/obi-ontology/obi/issues/1104 label: Circulome-seq as a synonym for OBI:0002144, inc. reclassification - id: https://api.github.com/repos/obi-ontology/obi/issues/1105 label: 'polyA XXX sequening assays. via assays.tsv template, #863' - id: https://api.github.com/repos/obi-ontology/obi/issues/1106 label: 'NTR: pooled clone sequencing' - id: https://api.github.com/repos/obi-ontology/obi/issues/1107 label: OBI vs scicrunch for identifiers for sequencers - id: https://api.github.com/repos/obi-ontology/obi/issues/1108 label: 'OBI: organism and BFO: object' - id: https://api.github.com/repos/obi-ontology/obi/issues/1109 label: add Giemsa stain assay to assay template - id: https://api.github.com/repos/obi-ontology/obi/issues/111 label: File Formats - id: https://api.github.com/repos/obi-ontology/obi/issues/1110 label: Add link to OBI Term ID Request sheet - id: https://api.github.com/repos/obi-ontology/obi/issues/1111 label: Add term 'individual organism specimen' - id: https://api.github.com/repos/obi-ontology/obi/issues/1112 label: Add study-designs template to README - id: https://api.github.com/repos/obi-ontology/obi/issues/1113 label: '[WIP] Create devices and organizations templates' - id: https://api.github.com/repos/obi-ontology/obi/issues/1114 label: Create devices and organizations templates - id: https://api.github.com/repos/obi-ontology/obi/issues/1115 label: 'NTR: counting assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1116 label: Add range 'manufacturer' to 'is_manufactured_by' - id: https://api.github.com/repos/obi-ontology/obi/issues/1117 label: 'NTRs: assay terms' - id: https://api.github.com/repos/obi-ontology/obi/issues/1118 label: 2 new terms and a definition touchup - id: https://api.github.com/repos/obi-ontology/obi/issues/1119 label: NTR request "massively parallel reporter assay" - id: https://api.github.com/repos/obi-ontology/obi/issues/112 label: outlier_role - id: https://api.github.com/repos/obi-ontology/obi/issues/1120 label: 'Change label of OBI object property: supplies' - id: https://api.github.com/repos/obi-ontology/obi/issues/1121 label: 'The ontology header is missing required metadata: title.' - id: https://api.github.com/repos/obi-ontology/obi/issues/1122 label: Terms for 454 sequencers have the same definition - id: https://api.github.com/repos/obi-ontology/obi/issues/1123 label: Duplicate definitions for inverse properties - id: https://api.github.com/repos/obi-ontology/obi/issues/1124 label: pM1b (lung) has the same definition as pM1 (lung) - id: https://api.github.com/repos/obi-ontology/obi/issues/1125 label: '''gel electrophoresis system'' has same definition as parent' - id: https://api.github.com/repos/obi-ontology/obi/issues/1126 label: '''specific enzymatic cleavage'' has same definition as ''non specific enzymatic cleavage'' ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1127 label: Generation of NIAID-GSC-BRC view during OBI release - id: https://api.github.com/repos/obi-ontology/obi/issues/1128 label: Add title to ontology metadata - id: https://api.github.com/repos/obi-ontology/obi/issues/1129 label: 'Update logical definition of ''human specimen set'', fixes #883' - id: https://api.github.com/repos/obi-ontology/obi/issues/113 label: manufacturing process - id: https://api.github.com/repos/obi-ontology/obi/issues/1130 label: massively parallel reporter assay 2nd try - id: https://api.github.com/repos/obi-ontology/obi/issues/1131 label: 'Reimplement #1118 from master' - id: https://api.github.com/repos/obi-ontology/obi/issues/1132 label: Update modules - id: https://api.github.com/repos/obi-ontology/obi/issues/1133 label: Add synonym 'DNA barcoding assay' (or change primary label) OBI_0001960 - id: https://api.github.com/repos/obi-ontology/obi/issues/1134 label: DNA cleavage, restriction analysis - fix label, definition, placement in hierarchy - id: https://api.github.com/repos/obi-ontology/obi/issues/1135 label: Review REO terms for adoption into OBI - id: https://api.github.com/repos/obi-ontology/obi/issues/1136 label: pseudovirus entry assay - id: https://api.github.com/repos/obi-ontology/obi/issues/1137 label: Add two device terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1138 label: add planned process and objective terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1139 label: Add VEuPathDB assays - id: https://api.github.com/repos/obi-ontology/obi/issues/114 label: 'use of analyte_role in assays in which none is detected ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1140 label: Update README.md - id: https://api.github.com/repos/obi-ontology/obi/issues/1141 label: Deprecated GO term - id: https://api.github.com/repos/obi-ontology/obi/issues/1142 label: Origin/ddooley 4 - id: https://api.github.com/repos/obi-ontology/obi/issues/1143 label: Issues 1134 and 1136 - id: https://api.github.com/repos/obi-ontology/obi/issues/1144 label: Update term import - id: https://api.github.com/repos/obi-ontology/obi/issues/1145 label: 'NTR: PLAC-seq ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1146 label: Add script to sort templates and standardize quoting and line endings - id: https://api.github.com/repos/obi-ontology/obi/issues/1147 label: Add several adoptive transfer assays for IEDB - id: https://api.github.com/repos/obi-ontology/obi/issues/1148 label: Remove unneeded annotations from OBO_imports.owl - id: https://api.github.com/repos/obi-ontology/obi/issues/1149 label: Update IAO version - id: https://api.github.com/repos/obi-ontology/obi/issues/115 label: Antibody tagged with a reporter molecule - id: https://api.github.com/repos/obi-ontology/obi/issues/1150 label: Move views to separate directories - id: https://api.github.com/repos/obi-ontology/obi/issues/1151 label: Add new view for NIAID-GSC-BRC - id: https://api.github.com/repos/obi-ontology/obi/issues/1152 label: Release candidate 2020-04-09 - id: https://api.github.com/repos/obi-ontology/obi/issues/1153 label: LOINC-inspired clinical assay template for discussion on Monday 13th - id: https://api.github.com/repos/obi-ontology/obi/issues/1154 label: Recommended revision for "Health Care Provider Role" - id: https://api.github.com/repos/obi-ontology/obi/issues/1155 label: Update Travis CI badge in README - id: https://api.github.com/repos/obi-ontology/obi/issues/1156 label: Problematic terms in new OBI release (2020-04-09) - id: https://api.github.com/repos/obi-ontology/obi/issues/1157 label: 'Fix #1156, bad REO prefixes' - id: https://api.github.com/repos/obi-ontology/obi/issues/1158 label: Add check for bad IRIs - id: https://api.github.com/repos/obi-ontology/obi/issues/1159 label: Move all obsolete terms to `obsolete.tsv`, add check - id: https://api.github.com/repos/obi-ontology/obi/issues/116 label: Definition of has_specified_input/output - id: https://api.github.com/repos/obi-ontology/obi/issues/1160 label: Add a check for bad IRIs - id: https://api.github.com/repos/obi-ontology/obi/issues/1161 label: Add all obsolete classes to template - id: https://api.github.com/repos/obi-ontology/obi/issues/1162 label: Create biopsy.tsv - id: https://api.github.com/repos/obi-ontology/obi/issues/1163 label: NTR Add OBI vacuum-assisted biopsy needle - id: https://api.github.com/repos/obi-ontology/obi/issues/1164 label: 'NTR: induced sputum specimen' - id: https://api.github.com/repos/obi-ontology/obi/issues/1165 label: 'Update obi-edit.owl to fix #1120 (supplies --> provisions)' - id: https://api.github.com/repos/obi-ontology/obi/issues/1166 label: Update README.md - id: https://api.github.com/repos/obi-ontology/obi/issues/1167 label: 'Request: consider broadening definition of OBI:device' - id: https://api.github.com/repos/obi-ontology/obi/issues/1168 label: 'Fix definitions for #1126' - id: https://api.github.com/repos/obi-ontology/obi/issues/1169 label: 'NTR: SPRITE assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/117 label: related_to - id: https://api.github.com/repos/obi-ontology/obi/issues/1170 label: Passaging process - id: https://api.github.com/repos/obi-ontology/obi/issues/1171 label: Update biobank-specimens.tsv - id: https://api.github.com/repos/obi-ontology/obi/issues/1172 label: broken imports in HADO and PDRO - id: https://api.github.com/repos/obi-ontology/obi/issues/1173 label: Update biobank-specimens.tsv - id: https://api.github.com/repos/obi-ontology/obi/issues/1174 label: Why is organism not under object? - id: https://api.github.com/repos/obi-ontology/obi/issues/1175 label: Names of sequencing software - id: https://api.github.com/repos/obi-ontology/obi/issues/1176 label: 'Specimen terms request ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1177 label: Add 'passage process' and 'passage history record' - id: https://api.github.com/repos/obi-ontology/obi/issues/1178 label: 'NTRs: omics related assay terms' - id: https://api.github.com/repos/obi-ontology/obi/issues/1179 label: should 'RNA sequencing assay' be merged into 'RNA-seq assay'? - id: https://api.github.com/repos/obi-ontology/obi/issues/118 label: study roles - id: https://api.github.com/repos/obi-ontology/obi/issues/1180 label: request alternate term for OBI:0000366 'metabolite profiling assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1181 label: 'Term request: surveillance process' - id: https://api.github.com/repos/obi-ontology/obi/issues/1182 label: OBI:epitope - id: https://api.github.com/repos/obi-ontology/obi/issues/1183 label: Weird term stanza in obi.obo file - id: https://api.github.com/repos/obi-ontology/obi/issues/1184 label: 'fixed text description for OBI:0002305 per issue #1124' - id: https://api.github.com/repos/obi-ontology/obi/issues/1185 label: 'replaced OBI health care provider role with OMRSE term as per #1154' - id: https://api.github.com/repos/obi-ontology/obi/issues/1186 label: 'Term request: ''platelet-poor plasma preparation'' and ''platelet-poor plasma''' - id: https://api.github.com/repos/obi-ontology/obi/issues/1187 label: Remove OIO terms when converting to OBO - id: https://api.github.com/repos/obi-ontology/obi/issues/1188 label: ordinal value specification and singleX ATAC - id: https://api.github.com/repos/obi-ontology/obi/issues/1189 label: 'Term request: estimated' - id: https://api.github.com/repos/obi-ontology/obi/issues/119 label: runs software - id: https://api.github.com/repos/obi-ontology/obi/issues/1190 label: 'add estimated value class OBI:0002749 for #1189' - id: https://api.github.com/repos/obi-ontology/obi/issues/1191 label: New assays for CFDE - id: https://api.github.com/repos/obi-ontology/obi/issues/1192 label: 'NTR: CUT&RUN assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1193 label: NTR Personal Protective Equipment - id: https://api.github.com/repos/obi-ontology/obi/issues/1194 label: NTR specimen collection device and subclasses - id: https://api.github.com/repos/obi-ontology/obi/issues/1195 label: 'NTR: Metatranscriptome Profiling' - id: https://api.github.com/repos/obi-ontology/obi/issues/1196 label: Berrios072820 - id: https://api.github.com/repos/obi-ontology/obi/issues/1197 label: Add specimens from TURBO to OBI - id: https://api.github.com/repos/obi-ontology/obi/issues/1198 label: derives from semantics for processed specimens? - id: https://api.github.com/repos/obi-ontology/obi/issues/1199 label: Mam20200805 - id: https://api.github.com/repos/obi-ontology/obi/issues/12 label: Concentration quality and assay-derived info content entity - id: https://api.github.com/repos/obi-ontology/obi/issues/120 label: has parameter - id: https://api.github.com/repos/obi-ontology/obi/issues/1200 label: 'NTRs: light source terms' - id: https://api.github.com/repos/obi-ontology/obi/issues/1201 label: Remove non-English annotations from OBO imports - id: https://api.github.com/repos/obi-ontology/obi/issues/1202 label: 'NTR: "presence or over-threshold value specification"' - id: https://api.github.com/repos/obi-ontology/obi/issues/1203 label: 'NTR: Immunoassay process' - id: https://api.github.com/repos/obi-ontology/obi/issues/1204 label: Reserve OBI ID range for assays being modelled by the PennTURBO team - id: https://api.github.com/repos/obi-ontology/obi/issues/1205 label: Update to IAO 2020-06-10 - id: https://api.github.com/repos/obi-ontology/obi/issues/1206 label: 'ordinal or over-threshold value specification #1202' - id: https://api.github.com/repos/obi-ontology/obi/issues/1207 label: LOINC imports - id: https://api.github.com/repos/obi-ontology/obi/issues/1208 label: OntoFox import terms required by assays from PennTURBO team - id: https://api.github.com/repos/obi-ontology/obi/issues/1209 label: Remove non-English annotations from OBO import - id: https://api.github.com/repos/obi-ontology/obi/issues/121 label: has_vendor, has provider - id: https://api.github.com/repos/obi-ontology/obi/issues/1210 label: Update README.md - id: https://api.github.com/repos/obi-ontology/obi/issues/1211 label: Add a views task to the Makefile - id: https://api.github.com/repos/obi-ontology/obi/issues/1212 label: 'Add presence or over-threshold value specification #1202' - id: https://api.github.com/repos/obi-ontology/obi/issues/1213 label: add 3 karyotype related terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1214 label: 'Single-value binding of antibody with reporter to antigen assay #1203' - id: https://api.github.com/repos/obi-ontology/obi/issues/1215 label: Replace obsolete GO 'core promoter binding' - id: https://api.github.com/repos/obi-ontology/obi/issues/1216 label: Update most of the OntoFox imports - id: https://api.github.com/repos/obi-ontology/obi/issues/1217 label: NTRs for arthropod specimen collection - id: https://api.github.com/repos/obi-ontology/obi/issues/1218 label: "Resolves #1186: Create classes 'platelet-poor plasma preparation proc\u2026" - id: https://api.github.com/repos/obi-ontology/obi/issues/1219 label: add 'mass per unit volume' to OntoFox input for UO - id: https://api.github.com/repos/obi-ontology/obi/issues/122 label: has model - id: https://api.github.com/repos/obi-ontology/obi/issues/1220 label: When imported via OntoFox, UO's 'mass per unit volume' loses its label - id: https://api.github.com/repos/obi-ontology/obi/issues/1221 label: Exclude 'dataset creating' from OBI core - id: https://api.github.com/repos/obi-ontology/obi/issues/1222 label: Release candidate 2020-08-24 - id: https://api.github.com/repos/obi-ontology/obi/issues/1223 label: New terms task - id: https://api.github.com/repos/obi-ontology/obi/issues/1224 label: Create a "base" file - id: https://api.github.com/repos/obi-ontology/obi/issues/1225 label: Add a base file to views - id: https://api.github.com/repos/obi-ontology/obi/issues/1226 label: New terms for cell gating - id: https://api.github.com/repos/obi-ontology/obi/issues/1227 label: remote patient assessment - id: https://api.github.com/repos/obi-ontology/obi/issues/1228 label: Term "Antigen binding" subclass of "molecular function"? - id: https://api.github.com/repos/obi-ontology/obi/issues/1229 label: vial and chromatography device - id: https://api.github.com/repos/obi-ontology/obi/issues/123 label: performed_by/acts_as - id: https://api.github.com/repos/obi-ontology/obi/issues/1230 label: Provide patterns for relating absence of actionable data with assay "successfulness" - id: https://api.github.com/repos/obi-ontology/obi/issues/1231 label: 'New terms, issue #1176' - id: https://api.github.com/repos/obi-ontology/obi/issues/1232 label: Does OBI want the following sequence assembly datums? - id: https://api.github.com/repos/obi-ontology/obi/issues/1233 label: 'NTR: study group roles' - id: https://api.github.com/repos/obi-ontology/obi/issues/1234 label: ' in vitro model and in vivo model ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1235 label: new OBI terms for child consent related ? - id: https://api.github.com/repos/obi-ontology/obi/issues/1236 label: 'surveillance process added #1181' - id: https://api.github.com/repos/obi-ontology/obi/issues/1237 label: Issue1233 - id: https://api.github.com/repos/obi-ontology/obi/issues/1238 label: xCELLigence - id: https://api.github.com/repos/obi-ontology/obi/issues/1239 label: Added light source terms - id: https://api.github.com/repos/obi-ontology/obi/issues/124 label: is_concretization_of - id: https://api.github.com/repos/obi-ontology/obi/issues/1240 label: Clarify the definition of Cytometer under device/measurement device - id: https://api.github.com/repos/obi-ontology/obi/issues/1241 label: New sample-collection template & additions to device template - id: https://api.github.com/repos/obi-ontology/obi/issues/1242 label: population based design issue 1090 and updated modules - id: https://api.github.com/repos/obi-ontology/obi/issues/1243 label: 'Draft NTRs for LINCS assays ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1244 label: Added relationship 'is_model_output_for' - id: https://api.github.com/repos/obi-ontology/obi/issues/1245 label: Fix 'antigen binding' placement - id: https://api.github.com/repos/obi-ontology/obi/issues/1246 label: Clarification regarding 'OBI:specimen identifier' and 'OMIABIS:specimen ID' - id: https://api.github.com/repos/obi-ontology/obi/issues/1247 label: '"nasal cavity" (UBERON:0001707) has no parent' - id: https://api.github.com/repos/obi-ontology/obi/issues/1248 label: updates an alternative term for "nasopharyngeal aspirate specimen" - id: https://api.github.com/repos/obi-ontology/obi/issues/1249 label: 'NTR: Illumina MiniSeq sequencing platform' - id: https://api.github.com/repos/obi-ontology/obi/issues/125 label: output/input data - id: https://api.github.com/repos/obi-ontology/obi/issues/1250 label: 'NTR: endotracheal aspirate specimen & endotracheal tube specimen' - id: https://api.github.com/repos/obi-ontology/obi/issues/1251 label: 'NTR: Capture Hi-C' - id: https://api.github.com/repos/obi-ontology/obi/issues/1252 label: Question about 'sequence annotation reporting role' - id: https://api.github.com/repos/obi-ontology/obi/issues/1253 label: 'New clinical analyte assays template: bottom up from EHR' - id: https://api.github.com/repos/obi-ontology/obi/issues/1254 label: Assay axiomatization is complex and frequently over-specified - id: https://api.github.com/repos/obi-ontology/obi/issues/1255 label: Move RNA-seq assay under RNA sequencing assay - id: https://api.github.com/repos/obi-ontology/obi/issues/1256 label: endotracheal aspirate specimen & endotracheal tube specimen - id: https://api.github.com/repos/obi-ontology/obi/issues/1257 label: 'NTR: endotracheal tube' - id: https://api.github.com/repos/obi-ontology/obi/issues/1258 label: 'NTR: single-nucleus RNA sequencing assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1259 label: 'NTR: fibroblast specimen' - id: https://api.github.com/repos/obi-ontology/obi/issues/126 label: results_from - id: https://api.github.com/repos/obi-ontology/obi/issues/1260 label: 'NTR: "chorionic villi sample - blood" and "fibroblasts - blood"' - id: https://api.github.com/repos/obi-ontology/obi/issues/1261 label: endotracheal specimens - id: https://api.github.com/repos/obi-ontology/obi/issues/1262 label: 'NTR: altitude measurement datum' - id: https://api.github.com/repos/obi-ontology/obi/issues/1263 label: Definition and axioms of 'scalar measurement datum' - id: https://api.github.com/repos/obi-ontology/obi/issues/1264 label: Definition and usage of 'scalar score from composite inputs' - id: https://api.github.com/repos/obi-ontology/obi/issues/1265 label: I think I'm misusing ChEBI "...molecular entities" - id: https://api.github.com/repos/obi-ontology/obi/issues/1266 label: Fix definitions for cytometer and cytometry assay - id: https://api.github.com/repos/obi-ontology/obi/issues/1267 label: Test candidate PR workflow - id: https://api.github.com/repos/obi-ontology/obi/issues/1268 label: 2020-12-16 release candidate - id: https://api.github.com/repos/obi-ontology/obi/issues/1269 label: Create candidate task to make PR for release - id: https://api.github.com/repos/obi-ontology/obi/issues/127 label: objective driven process - id: https://api.github.com/repos/obi-ontology/obi/issues/1270 label: 2020-12-16 release candidate - id: https://api.github.com/repos/obi-ontology/obi/issues/1271 label: Delete old branches - id: https://api.github.com/repos/obi-ontology/obi/issues/1272 label: Add ID annotations to OBI? - id: https://api.github.com/repos/obi-ontology/obi/issues/1273 label: Add make sort step to instructions - id: https://api.github.com/repos/obi-ontology/obi/issues/1274 label: PPE and specimen collection device terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1275 label: Revise equivalency axiom for 'count' - id: https://api.github.com/repos/obi-ontology/obi/issues/1276 label: Subtypes of 'scalar measurement datum' - id: https://api.github.com/repos/obi-ontology/obi/issues/1277 label: '''longitude coordinate measurement datum'' and ''latitude coordinate measurement datum''' - id: https://api.github.com/repos/obi-ontology/obi/issues/1278 label: Column in sample-collection template for specimen type (output) - id: https://api.github.com/repos/obi-ontology/obi/issues/1279 label: This is a set of 8 protein/gene sequence start/stop terms - id: https://api.github.com/repos/obi-ontology/obi/issues/128 label: fluorochrome - id: https://api.github.com/repos/obi-ontology/obi/issues/1280 label: 'altitude measurement datum, issue #1262' - id: https://api.github.com/repos/obi-ontology/obi/issues/1281 label: Fix links to view/ in readme.md - id: https://api.github.com/repos/obi-ontology/obi/issues/1282 label: misspelling in specimen collection device's class expression? - id: https://api.github.com/repos/obi-ontology/obi/issues/1283 label: Remove logical definition from textual definition of 'specimen collection device' - id: https://api.github.com/repos/obi-ontology/obi/issues/1284 label: 'Add terms required for #1253 to OntoFox inputs file' - id: https://api.github.com/repos/obi-ontology/obi/issues/1285 label: 'OntoFox inputs for new assays from TURBO, issue #1284' - id: https://api.github.com/repos/obi-ontology/obi/issues/1286 label: Terms to move from FLU to OBI - id: https://api.github.com/repos/obi-ontology/obi/issues/1287 label: Add OBI:0002984 'capture Hi-C assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1288 label: 'NTR: blood meal host organism and related data items' - id: https://api.github.com/repos/obi-ontology/obi/issues/1289 label: Define subtypes of 'organization' - id: https://api.github.com/repos/obi-ontology/obi/issues/129 label: label_role - id: https://api.github.com/repos/obi-ontology/obi/issues/1290 label: 'NTRs: Imaging assays' - id: https://api.github.com/repos/obi-ontology/obi/issues/1291 label: Add three new imaging assays + one device - id: https://api.github.com/repos/obi-ontology/obi/issues/1292 label: simplifying axiom for adapter-sequence trimming - id: https://api.github.com/repos/obi-ontology/obi/issues/1293 label: simplifying axiom for adapter-sequence trimming, take 2 - id: https://api.github.com/repos/obi-ontology/obi/issues/1294 label: file merge (OBI:0002566) has axioms that are more specific than label/def suggests - id: https://api.github.com/repos/obi-ontology/obi/issues/1295 label: Discussion of term Hospital and similar terms in OMRSE - id: https://api.github.com/repos/obi-ontology/obi/issues/1296 label: 'NTR: Specimen collection duration' - id: https://api.github.com/repos/obi-ontology/obi/issues/1297 label: 'NTR: placental blood specimen' - id: https://api.github.com/repos/obi-ontology/obi/issues/1298 label: Add OBI:0002988 'duration of specimen collection' - id: https://api.github.com/repos/obi-ontology/obi/issues/1299 label: scalar measurement datum adjustment, issue 1263 - id: https://api.github.com/repos/obi-ontology/obi/issues/13 label: documentation of "material" - id: https://api.github.com/repos/obi-ontology/obi/issues/130 label: project file annotations - id: https://api.github.com/repos/obi-ontology/obi/issues/1300 label: Add material supplier, fix organization roles - id: https://api.github.com/repos/obi-ontology/obi/issues/1301 label: Removing a unit label from scalar value spec. - id: https://api.github.com/repos/obi-ontology/obi/issues/1302 label: 'NTRs: additional arthropod collection terms' - id: https://api.github.com/repos/obi-ontology/obi/issues/1303 label: enzymatic activity assay NTR - id: https://api.github.com/repos/obi-ontology/obi/issues/1304 label: Create mappings between OBI and BAO - id: https://api.github.com/repos/obi-ontology/obi/issues/1305 label: Add OBI:0002988 'duration of specimen collection' - id: https://api.github.com/repos/obi-ontology/obi/issues/1306 label: Organism and viruses - id: https://api.github.com/repos/obi-ontology/obi/issues/1307 label: 'new term requests receptor repertoire sequencing ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1308 label: new term requests for ImmPort - id: https://api.github.com/repos/obi-ontology/obi/issues/1309 label: '''clinical chemistry assay'' definition does not match axiom' - id: https://api.github.com/repos/obi-ontology/obi/issues/131 label: modifications to 'has objective' relation - id: https://api.github.com/repos/obi-ontology/obi/issues/1310 label: Consider generalizing the definition of 'hematology assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1311 label: personal protection equipment part 2 - id: https://api.github.com/repos/obi-ontology/obi/issues/1312 label: Two new sequencing assay terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1313 label: 'enzyme activity assay #1303' - id: https://api.github.com/repos/obi-ontology/obi/issues/1314 label: fixed analyte to be parathyroid hormone - id: https://api.github.com/repos/obi-ontology/obi/issues/1315 label: rearrange Header columns in epitope-assays - id: https://api.github.com/repos/obi-ontology/obi/issues/1316 label: 'Added blood meal terms as per #1288' - id: https://api.github.com/repos/obi-ontology/obi/issues/1317 label: arthropod collection terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1318 label: NTR insulin concentration measurement assay and data item - id: https://api.github.com/repos/obi-ontology/obi/issues/1319 label: scalar rate rename - id: https://api.github.com/repos/obi-ontology/obi/issues/132 label: has_specified_input and output relations - id: https://api.github.com/repos/obi-ontology/obi/issues/1320 label: 'NTR: fluorogenic PCR assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1321 label: Split OBO imports into individual modules - id: https://api.github.com/repos/obi-ontology/obi/issues/1322 label: 'NTR: terms from VEuPathDB Ontology of potential general interest' - id: https://api.github.com/repos/obi-ontology/obi/issues/1323 label: epitope-assays.tsv columns cleanup - id: https://api.github.com/repos/obi-ontology/obi/issues/1324 label: 'WIP: Import workflow update' - id: https://api.github.com/repos/obi-ontology/obi/issues/1325 label: 'NTR: barcode target locus role and oligonucleotide primer set' - id: https://api.github.com/repos/obi-ontology/obi/issues/1326 label: Update epitope-assays.owl with changes - id: https://api.github.com/repos/obi-ontology/obi/issues/1327 label: Update clinical assays - id: https://api.github.com/repos/obi-ontology/obi/issues/1328 label: Revisit our use of reasoners - id: https://api.github.com/repos/obi-ontology/obi/issues/1329 label: Release candidate 2021-04-06 - id: https://api.github.com/repos/obi-ontology/obi/issues/133 label: Device setting - id: https://api.github.com/repos/obi-ontology/obi/issues/1330 label: Standardize annotations in ROBOT templates - id: https://api.github.com/repos/obi-ontology/obi/issues/1331 label: '''clinical chemistry assay'' axiom fix' - id: https://api.github.com/repos/obi-ontology/obi/issues/1332 label: Assess Eagle-i Resource Ontology terms (ERO) - id: https://api.github.com/repos/obi-ontology/obi/issues/1333 label: fix range for file merge - id: https://api.github.com/repos/obi-ontology/obi/issues/1334 label: Update sequence-analysis.owl - id: https://api.github.com/repos/obi-ontology/obi/issues/1335 label: 'Added barcode related terms per #1325' - id: https://api.github.com/repos/obi-ontology/obi/issues/1336 label: Clean up some unparsed triple errors - id: https://api.github.com/repos/obi-ontology/obi/issues/1337 label: Add pooled clone seq assay Issue 1106 - id: https://api.github.com/repos/obi-ontology/obi/issues/1338 label: 'NT ''fluorogenic PCR assay'' #1320' - id: https://api.github.com/repos/obi-ontology/obi/issues/1339 label: Write script to say where a term is defined (and used?) - id: https://api.github.com/repos/obi-ontology/obi/issues/134 label: 'measured data and derived data ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1340 label: Add locate script - id: https://api.github.com/repos/obi-ontology/obi/issues/1341 label: Write a script to relabel a term - id: https://api.github.com/repos/obi-ontology/obi/issues/1342 label: Fix devices template - id: https://api.github.com/repos/obi-ontology/obi/issues/1343 label: Switch to GitHub Actions - id: https://api.github.com/repos/obi-ontology/obi/issues/1344 label: Add script to relabel terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1345 label: 'bioreactor: has strange definition, and consider coordinating with ENVO' - id: https://api.github.com/repos/obi-ontology/obi/issues/1346 label: "Relabel \u201C3D structure determination assay\u201D and its subclasses,\ \ and adding new term." - id: https://api.github.com/repos/obi-ontology/obi/issues/1347 label: Remove editor notes from some devices - id: https://api.github.com/repos/obi-ontology/obi/issues/1348 label: 'NTR: genotyping by PCR assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1349 label: 'Remove editor comment from def, fixes #1345' - id: https://api.github.com/repos/obi-ontology/obi/issues/135 label: comments from Robert H. - id: https://api.github.com/repos/obi-ontology/obi/issues/1350 label: 'Remove strange rdf:type axioms, fixes #1336' - id: https://api.github.com/repos/obi-ontology/obi/issues/1351 label: Add workflow to make OBI Excel sheet for editing templates - id: https://api.github.com/repos/obi-ontology/obi/issues/1352 label: 'adds ''measurand'' column to assays.tsv (issue #1062)' - id: https://api.github.com/repos/obi-ontology/obi/issues/1353 label: adds 'material processing technique' column to epitope-assays.tsv - id: https://api.github.com/repos/obi-ontology/obi/issues/1354 label: NTRs from NGBO ontology - id: https://api.github.com/repos/obi-ontology/obi/issues/1355 label: 'add term: genotyping by PCR assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1356 label: medical device - id: https://api.github.com/repos/obi-ontology/obi/issues/1357 label: 'NTR: coma severity assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1358 label: Bio-layer interferometry assays - id: https://api.github.com/repos/obi-ontology/obi/issues/1359 label: Consider removing "SPLIT" from Parent columns - id: https://api.github.com/repos/obi-ontology/obi/issues/136 label: original definition and editor of contributed terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1360 label: '''pathogen detection assay'' should be child of ''organism identification assay''' - id: https://api.github.com/repos/obi-ontology/obi/issues/1361 label: Fix spelling of 'Phillip Lord' - id: https://api.github.com/repos/obi-ontology/obi/issues/1362 label: 'Discussed on the call 10/19: To clearly differentiate from STATO term and make OBI specific, the relationship label should be tightened to be ''is experimental model output for'', and the domain being ''measurement datum''' - id: https://api.github.com/repos/obi-ontology/obi/issues/1363 label: 'Here is an attempt at a definition. I forgot if/how we were trying to have ''aristotelian'' style definitions for relationships, but I tried:' - id: https://api.github.com/repos/obi-ontology/obi/issues/1364 label: NTRs for 3D neuron morphology determination assays - id: https://api.github.com/repos/obi-ontology/obi/issues/1365 label: western blot assay questions - id: https://api.github.com/repos/obi-ontology/obi/issues/1366 label: questions about "induced mutation" - id: https://api.github.com/repos/obi-ontology/obi/issues/1367 label: question about "site directed mutagenesis" definition/usage - id: https://api.github.com/repos/obi-ontology/obi/issues/1368 label: equivalence axiom for 'mass spectrometry assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1369 label: New assay terms & updates from IGS - id: https://api.github.com/repos/obi-ontology/obi/issues/137 label: action specification - id: https://api.github.com/repos/obi-ontology/obi/issues/1370 label: 'NTR: laboratory-based population' - id: https://api.github.com/repos/obi-ontology/obi/issues/1371 label: Request to improve label of OBI_0003005 - id: https://api.github.com/repos/obi-ontology/obi/issues/1372 label: Update parent & definition of 'pathogen detection assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1373 label: 'removes "SPLIT" from parent column ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1374 label: adds 'coma severity assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1375 label: Dual injections from FOODON and OBI into GAZ causes incoherency - id: https://api.github.com/repos/obi-ontology/obi/issues/1376 label: TUNEL assay term request - id: https://api.github.com/repos/obi-ontology/obi/issues/1377 label: Update assays.tsv (training) - id: https://api.github.com/repos/obi-ontology/obi/issues/1378 label: VEuPath terms for obi-dev - id: https://api.github.com/repos/obi-ontology/obi/issues/1379 label: Request to import OGMS 'clinical laboratory test' - id: https://api.github.com/repos/obi-ontology/obi/issues/138 label: NGRL testing technologies - id: https://api.github.com/repos/obi-ontology/obi/issues/1380 label: 'NTR: 3D determination assays and material entity terms' - id: https://api.github.com/repos/obi-ontology/obi/issues/1381 label: Device terms from VEuPath - id: https://api.github.com/repos/obi-ontology/obi/issues/1382 label: Sequence analysis term from VEuPath - id: https://api.github.com/repos/obi-ontology/obi/issues/1383 label: Biobank specimen terms from VEuPath - id: https://api.github.com/repos/obi-ontology/obi/issues/1384 label: Collection terms from VEuPath - id: https://api.github.com/repos/obi-ontology/obi/issues/1385 label: 'NTR: TUNEL assay [Label: training]' - id: https://api.github.com/repos/obi-ontology/obi/issues/1386 label: 'Update assays.tsv with new TUNEL assay term, issue #1385 [Label: training]' - id: https://api.github.com/repos/obi-ontology/obi/issues/1387 label: Second attempt at assays.tsv update - id: https://api.github.com/repos/obi-ontology/obi/issues/1388 label: Clarify steps to edit templates with Excel - id: https://api.github.com/repos/obi-ontology/obi/issues/1389 label: induced mutation fixes - id: https://api.github.com/repos/obi-ontology/obi/issues/139 label: nutrient in role branch - id: https://api.github.com/repos/obi-ontology/obi/issues/1390 label: 'Terms from FLU #1286' - id: https://api.github.com/repos/obi-ontology/obi/issues/1391 label: Assay terms from VEuPath - id: https://api.github.com/repos/obi-ontology/obi/issues/1392 label: lab-based population issue 1370 - id: https://api.github.com/repos/obi-ontology/obi/issues/1393 label: CFDE NTRs for HuBMAP project - id: https://api.github.com/repos/obi-ontology/obi/issues/1394 label: Add IDO 'antibacterial' - id: https://api.github.com/repos/obi-ontology/obi/issues/1395 label: RNA sequencing assay question - id: https://api.github.com/repos/obi-ontology/obi/issues/1396 label: 'NTR: methods of generating alleles in model organisms' - id: https://api.github.com/repos/obi-ontology/obi/issues/1397 label: Request to import terms from COB - id: https://api.github.com/repos/obi-ontology/obi/issues/1398 label: 3 new assays for ImmPort - id: https://api.github.com/repos/obi-ontology/obi/issues/1399 label: Generalize "cytometric bead array assay" definition and add two subclasses - id: https://api.github.com/repos/obi-ontology/obi/issues/14 label: objective model - id: https://api.github.com/repos/obi-ontology/obi/issues/140 label: 'New term: DMEM' - id: https://api.github.com/repos/obi-ontology/obi/issues/1400 label: Add 'Illumina MiniSeq' to devices - id: https://api.github.com/repos/obi-ontology/obi/issues/1401 label: cytometric bead array assays - id: https://api.github.com/repos/obi-ontology/obi/issues/1402 label: Imports COB term, adds 3 molecular complex terms, and 2 assays - id: https://api.github.com/repos/obi-ontology/obi/issues/1403 label: Question about "fluorescence detection assay" logic - id: https://api.github.com/repos/obi-ontology/obi/issues/1404 label: Fixes output of 'fluorescence detection assay" - id: https://api.github.com/repos/obi-ontology/obi/issues/1405 label: Update biopsy.tsv - id: https://api.github.com/repos/obi-ontology/obi/issues/1406 label: duplicate specified i/o definition fix - id: https://api.github.com/repos/obi-ontology/obi/issues/1407 label: Update biopsy.owl - id: https://api.github.com/repos/obi-ontology/obi/issues/1408 label: Release candidate 2021-08-16 - id: https://api.github.com/repos/obi-ontology/obi/issues/1409 label: Axiom for 'antibiotic administration process' - id: https://api.github.com/repos/obi-ontology/obi/issues/141 label: Cell culture infers as a chemical solution - id: https://api.github.com/repos/obi-ontology/obi/issues/1410 label: NTR 3D neuron morphology assays issue 1364 - id: https://api.github.com/repos/obi-ontology/obi/issues/1411 label: 'Gel electrophoresis issue #1125' - id: https://api.github.com/repos/obi-ontology/obi/issues/1412 label: 'Update devices.tsv issue #1125' - id: https://api.github.com/repos/obi-ontology/obi/issues/1413 label: Release Candidate 2021-08-18 - id: https://api.github.com/repos/obi-ontology/obi/issues/1414 label: NTR for CMI-PB - id: https://api.github.com/repos/obi-ontology/obi/issues/1415 label: 'imports term ''complex of molecular entities'' ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1416 label: 'NTR for IEDB: binding datum and assays ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1417 label: Molecular complexes - id: https://api.github.com/repos/obi-ontology/obi/issues/1418 label: ' two 3D determination assays' - id: https://api.github.com/repos/obi-ontology/obi/issues/1419 label: Make equivalence axiom for 'mass spectrometry assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/142 label: Chimera - id: https://api.github.com/repos/obi-ontology/obi/issues/1420 label: 'adding terms for #1396' - id: https://api.github.com/repos/obi-ontology/obi/issues/1421 label: Immune epitope assays - id: https://api.github.com/repos/obi-ontology/obi/issues/1422 label: 3 d assays issue 1346 - id: https://api.github.com/repos/obi-ontology/obi/issues/1423 label: 1416#issuecomment-912060848 - id: https://api.github.com/repos/obi-ontology/obi/issues/1424 label: 80 assays for CEBS - id: https://api.github.com/repos/obi-ontology/obi/issues/1425 label: Binding datum terms issue 1416 - id: https://api.github.com/repos/obi-ontology/obi/issues/1426 label: Cytometric bead array assays - id: https://api.github.com/repos/obi-ontology/obi/issues/1427 label: Terms for CMI-PB - id: https://api.github.com/repos/obi-ontology/obi/issues/1428 label: 'NTR: blood assay datum' - id: https://api.github.com/repos/obi-ontology/obi/issues/1429 label: 'NTRs: more specimen assay terms' - id: https://api.github.com/repos/obi-ontology/obi/issues/143 label: Population - id: https://api.github.com/repos/obi-ontology/obi/issues/1430 label: 'NTR: in silico' - id: https://api.github.com/repos/obi-ontology/obi/issues/1431 label: multiplex PCR assay terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1432 label: Additional specimen assay terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1433 label: RNA sequencing subclasses - id: https://api.github.com/repos/obi-ontology/obi/issues/1434 label: Binding datum and assays - id: https://api.github.com/repos/obi-ontology/obi/issues/1435 label: Replaces hospital with 'hospital organization' from OMRSE. - id: https://api.github.com/repos/obi-ontology/obi/issues/1436 label: 'NTR: Laboratory' - id: https://api.github.com/repos/obi-ontology/obi/issues/1437 label: T cell cytokine assays - id: https://api.github.com/repos/obi-ontology/obi/issues/1438 label: Update import OMIABIS term IDs - id: https://api.github.com/repos/obi-ontology/obi/issues/1439 label: 'NTRs: membrane feeding device, membrane feeding assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/144 label: Sample population - id: https://api.github.com/repos/obi-ontology/obi/issues/1440 label: add term 'laboratory organization' - id: https://api.github.com/repos/obi-ontology/obi/issues/1441 label: Specimen assay data terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1442 label: membrane feeding device/assay & multiplex PCR assays - id: https://api.github.com/repos/obi-ontology/obi/issues/1443 label: 'NTR: antibodies from lymphocyte secretions assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1444 label: 'NTR: modified acid stain microscopy' - id: https://api.github.com/repos/obi-ontology/obi/issues/1445 label: Fix leading whitespace in obsolescence reason - id: https://api.github.com/repos/obi-ontology/obi/issues/1446 label: IEDB cytometric bead array assays - id: https://api.github.com/repos/obi-ontology/obi/issues/1447 label: adds in silico design - id: https://api.github.com/repos/obi-ontology/obi/issues/1448 label: Cell gating & Cytometry Synonyms - id: https://api.github.com/repos/obi-ontology/obi/issues/1449 label: 'Revision for new vial hierarchy issue #1229' - id: https://api.github.com/repos/obi-ontology/obi/issues/145 label: soil podzol - id: https://api.github.com/repos/obi-ontology/obi/issues/1450 label: Fix typo in epitope assays template - id: https://api.github.com/repos/obi-ontology/obi/issues/1451 label: added 'modified acid-fast stain microscopy assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1452 label: IEDB alternative terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1453 label: OBI "device" should be renamed? - id: https://api.github.com/repos/obi-ontology/obi/issues/1454 label: Write script to determine which new terms have been merged - id: https://api.github.com/repos/obi-ontology/obi/issues/1455 label: Add script to fill in term reservation sheet - id: https://api.github.com/repos/obi-ontology/obi/issues/1456 label: 'NTRs: antibody assay kits & their manufacturers' - id: https://api.github.com/repos/obi-ontology/obi/issues/1457 label: 'NTR: sequencing assays' - id: https://api.github.com/repos/obi-ontology/obi/issues/1458 label: Question regarding intra cellular electrophysiology recording assay hierarchy - id: https://api.github.com/repos/obi-ontology/obi/issues/1459 label: Change to 'viral hemagglutination inhibition assay' definition - id: https://api.github.com/repos/obi-ontology/obi/issues/146 label: waiting - problematic - id: https://api.github.com/repos/obi-ontology/obi/issues/1460 label: Add material processing template - id: https://api.github.com/repos/obi-ontology/obi/issues/1461 label: linking immunohistochemistry ( OBI:0001986) with histological assay (OBI:0600020) - id: https://api.github.com/repos/obi-ontology/obi/issues/1462 label: Binding datum changes - id: https://api.github.com/repos/obi-ontology/obi/issues/1463 label: Add checks for biopsy, device, and organization modules - id: https://api.github.com/repos/obi-ontology/obi/issues/1464 label: How to encode a ion flux assay using OBI? - id: https://api.github.com/repos/obi-ontology/obi/issues/1465 label: Add specimen-assay-data module - id: https://api.github.com/repos/obi-ontology/obi/issues/1466 label: antibodies from lymphocyte supernatant assay - id: https://api.github.com/repos/obi-ontology/obi/issues/1467 label: OBI device tree insufficient - id: https://api.github.com/repos/obi-ontology/obi/issues/1468 label: Remove whitespace around pipes in templates - id: https://api.github.com/repos/obi-ontology/obi/issues/1469 label: immune epitope binding assays - id: https://api.github.com/repos/obi-ontology/obi/issues/147 label: Fragment derived from protein - id: https://api.github.com/repos/obi-ontology/obi/issues/1470 label: Automatically remove whitespace surrounding pipe splits in templates - id: https://api.github.com/repos/obi-ontology/obi/issues/1471 label: New terms & updates for CFDE - id: https://api.github.com/repos/obi-ontology/obi/issues/1472 label: CFDE NTRs for 4DN project - id: https://api.github.com/repos/obi-ontology/obi/issues/1473 label: Ignore .venv/ - id: https://api.github.com/repos/obi-ontology/obi/issues/1474 label: Release Candidate 2022-01-03 - id: https://api.github.com/repos/obi-ontology/obi/issues/1475 label: Bad equivalent classes 'calcium cation assay' and 'ionized calcium assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1476 label: Bad equivalent classes 'lower respiratory tract specimen' and 'lower respiratory tract aspirate specimen'. - id: https://api.github.com/repos/obi-ontology/obi/issues/1477 label: Automatically reject equivalent named classes - id: https://api.github.com/repos/obi-ontology/obi/issues/1478 label: Never allow equivalent classes - id: https://api.github.com/repos/obi-ontology/obi/issues/1479 label: Move all obsolete terms into templates - id: https://api.github.com/repos/obi-ontology/obi/issues/148 label: Polyacrylamide gel - id: https://api.github.com/repos/obi-ontology/obi/issues/1480 label: Device utilizes material, and device capable of/enables process relationships - id: https://api.github.com/repos/obi-ontology/obi/issues/1481 label: Integrating MRIO with OBI - id: https://api.github.com/repos/obi-ontology/obi/issues/1482 label: 'NTR: cytotoxic T cell degranulation terms ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1483 label: Fix bad equivalent calcium assays - id: https://api.github.com/repos/obi-ontology/obi/issues/1484 label: amphiregulin production assays - id: https://api.github.com/repos/obi-ontology/obi/issues/1485 label: Add upper/lower limit of detection terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1486 label: Older release PURLs don't work - id: https://api.github.com/repos/obi-ontology/obi/issues/1487 label: removes equivalence axiom from OBI:0001317 - id: https://api.github.com/repos/obi-ontology/obi/issues/1488 label: 'Detection Technique Definition ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1489 label: Review 'assay detecting a molecular label' - id: https://api.github.com/repos/obi-ontology/obi/issues/149 label: Pool_of_specimens - id: https://api.github.com/repos/obi-ontology/obi/issues/1490 label: Question regarding OBI:organization and organization rules - id: https://api.github.com/repos/obi-ontology/obi/issues/1491 label: 'NTR: venous blood microbiology assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1492 label: 'viral hemagglutination inhibition assay def change ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1493 label: Definiton corrections to match label/axiom - id: https://api.github.com/repos/obi-ontology/obi/issues/1494 label: fluorescence & radioactivity detection binding assays - id: https://api.github.com/repos/obi-ontology/obi/issues/1495 label: add 'venous blood microbiology assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1496 label: adds 4 T cell degranulation terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1497 label: 2 terms with same definition - id: https://api.github.com/repos/obi-ontology/obi/issues/1498 label: 'fluorescence & radioactivity binding assays ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1499 label: electrophysiology assays - id: https://api.github.com/repos/obi-ontology/obi/issues/15 label: Remove explicit disjoints and write script to add them - id: https://api.github.com/repos/obi-ontology/obi/issues/150 label: Should scattered_molecular_aggregate be a defined class? - id: https://api.github.com/repos/obi-ontology/obi/issues/1500 label: OBI import is causing DL violations - id: https://api.github.com/repos/obi-ontology/obi/issues/1501 label: Fix DL violations - id: https://api.github.com/repos/obi-ontology/obi/issues/1502 label: 'NTR: high throughput multiplexed assays' - id: https://api.github.com/repos/obi-ontology/obi/issues/1503 label: deprecated two terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1504 label: Add logical axioms associated with 'data transformation' back? - id: https://api.github.com/repos/obi-ontology/obi/issues/1505 label: 'NTR: diagnostic process and diagnosis' - id: https://api.github.com/repos/obi-ontology/obi/issues/1506 label: data transformation and assay terms for tandom mass spectrometry and related terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1507 label: fix detection technique in assays.tsv for 'insecticide resistance by PCR-RELP assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1508 label: high throughput multiplexed assays - id: https://api.github.com/repos/obi-ontology/obi/issues/1509 label: 'Fixes duplicate definition of ''Centers for Disease Control and Prevention light trap'' ' - id: https://api.github.com/repos/obi-ontology/obi/issues/151 label: Obsolete Person and use NCBITaxon:9606 instead - id: https://api.github.com/repos/obi-ontology/obi/issues/1510 label: 'First PR for MRIO, including image data set and child MRI terms, issue #1481' - id: https://api.github.com/repos/obi-ontology/obi/issues/1511 label: 'NTR: interpretation of clinical variant ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1512 label: 'NTR: DNA processed specimen' - id: https://api.github.com/repos/obi-ontology/obi/issues/1513 label: Tested PR for MRIO, including image data set and child MRI terms, per 1481 - id: https://api.github.com/repos/obi-ontology/obi/issues/1514 label: Clarify that a senior developer will merge PRs - id: https://api.github.com/repos/obi-ontology/obi/issues/1515 label: 'NTR: milk assay datum, umbilical cord blood assay datum ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1516 label: Add 'target environment' column to assays template - id: https://api.github.com/repos/obi-ontology/obi/issues/1517 label: GO:0040030 is obsolete, but not properly marked obsolete in OBI - id: https://api.github.com/repos/obi-ontology/obi/issues/1518 label: 'add ''milk assay datum'', #1515' - id: https://api.github.com/repos/obi-ontology/obi/issues/1519 label: add two diagnosis related terms - id: https://api.github.com/repos/obi-ontology/obi/issues/152 label: Cellular_component - id: https://api.github.com/repos/obi-ontology/obi/issues/1520 label: add two diagnosis related terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1521 label: Detection Technique - id: https://api.github.com/repos/obi-ontology/obi/issues/1522 label: Adding catheter device - id: https://api.github.com/repos/obi-ontology/obi/issues/1523 label: 'NTR: Mosquito Magnet Liberty Plus trap' - id: https://api.github.com/repos/obi-ontology/obi/issues/1524 label: adds new term 'assay kit' - id: https://api.github.com/repos/obi-ontology/obi/issues/1525 label: Remove GO:0040029 and GO:0040030 - id: https://api.github.com/repos/obi-ontology/obi/issues/1526 label: 'NTRs: antigen specific antibodies in blood assay, + associated data items' - id: https://api.github.com/repos/obi-ontology/obi/issues/1527 label: Created data-sets template and added image data sets from MRIO - id: https://api.github.com/repos/obi-ontology/obi/issues/1528 label: 'NTR: mid-upper arm circumference datum' - id: https://api.github.com/repos/obi-ontology/obi/issues/1529 label: Create LICENSE - id: https://api.github.com/repos/obi-ontology/obi/issues/153 label: achieves_planned_objective - id: https://api.github.com/repos/obi-ontology/obi/issues/1530 label: 'cytotoxic T cell degranulation assays ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1531 label: fluorescence & radioactivity epitope binding assays - id: https://api.github.com/repos/obi-ontology/obi/issues/1532 label: 'NTR: peripheral blood mononuclear cell specimen' - id: https://api.github.com/repos/obi-ontology/obi/issues/1533 label: organizations duplicate definitions ROBOT report error - id: https://api.github.com/repos/obi-ontology/obi/issues/1534 label: added remote patient assessment - id: https://api.github.com/repos/obi-ontology/obi/issues/1535 label: error running make imports - id: https://api.github.com/repos/obi-ontology/obi/issues/1536 label: 'add term tracker items to "specimen" and "material sample" terms to link to context provided in #1013' - id: https://api.github.com/repos/obi-ontology/obi/issues/1537 label: 'sequencing assays #1457' - id: https://api.github.com/repos/obi-ontology/obi/issues/1538 label: '''placental blood specimen'' & assoc. microbiology assay & data terms' - id: https://api.github.com/repos/obi-ontology/obi/issues/1539 label: removes definitions from organizations - id: https://api.github.com/repos/obi-ontology/obi/issues/154 label: Include terms to allow query for Genepattern use case - id: https://api.github.com/repos/obi-ontology/obi/issues/1540 label: '''insecticide resistance by PCR-RELP assay'' detection technique correction' - id: https://api.github.com/repos/obi-ontology/obi/issues/1541 label: Update ROBOT version, Ontofox HTTPS, base file IAO filter - id: https://api.github.com/repos/obi-ontology/obi/issues/1542 label: Require passing report on obi-base - id: https://api.github.com/repos/obi-ontology/obi/issues/1543 label: Rework base file generation - id: https://api.github.com/repos/obi-ontology/obi/issues/1544 label: Use labels for 'has curation status' instead of CURIEs/IRIs - id: https://api.github.com/repos/obi-ontology/obi/issues/1545 label: 'new term request for CFDE-GlyGen project : synaptosome preparation process' - id: https://api.github.com/repos/obi-ontology/obi/issues/1546 label: 'NTRs: additional device terms needed for IGS gEAR project' - id: https://api.github.com/repos/obi-ontology/obi/issues/1547 label: subtypes of electrophysiology assay should be classified under electrophysiology assay - id: https://api.github.com/repos/obi-ontology/obi/issues/1548 label: adding 17 new assay terms for CFDE-4DN project - id: https://api.github.com/repos/obi-ontology/obi/issues/1549 label: 'XCL1 production terms ' - id: https://api.github.com/repos/obi-ontology/obi/issues/155 label: ONTIE term migration - id: https://api.github.com/repos/obi-ontology/obi/issues/1550 label: target context column - id: https://api.github.com/repos/obi-ontology/obi/issues/1551 label: Add OBO Dashboard badges - id: https://api.github.com/repos/obi-ontology/obi/issues/1552 label: OBO badges to README.md - id: https://api.github.com/repos/obi-ontology/obi/issues/1553 label: Add three missing textual definitions - id: https://api.github.com/repos/obi-ontology/obi/issues/1554 label: '2nd attempt - target context column ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1555 label: 'NTR: administration in vivo terms' - id: https://api.github.com/repos/obi-ontology/obi/issues/1556 label: 'review of assays with detection techniques ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1557 label: Fix DL violation for 'placental blood specimen' - id: https://api.github.com/repos/obi-ontology/obi/issues/1558 label: Release Candidate 2022-06-14 - id: https://api.github.com/repos/obi-ontology/obi/issues/1559 label: 'NTR: linked-read sequencing assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/156 label: Raw Data vs Processed data - id: https://api.github.com/repos/obi-ontology/obi/issues/1560 label: Date of measurement - id: https://api.github.com/repos/obi-ontology/obi/issues/1561 label: immune epitope biological activity assays - id: https://api.github.com/repos/obi-ontology/obi/issues/1562 label: administering substance in vivo terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1563 label: 'NTRs: Freezer, Freezer handle' - id: https://api.github.com/repos/obi-ontology/obi/issues/1564 label: add 'mid-upper arm circumference datum' - id: https://api.github.com/repos/obi-ontology/obi/issues/1565 label: adding 19 new device terms for gEAR project - id: https://api.github.com/repos/obi-ontology/obi/issues/1566 label: Fix typo 'A induced sputum...' in three definitions - id: https://api.github.com/repos/obi-ontology/obi/issues/1567 label: Release Candidate 2022-07-11 - id: https://api.github.com/repos/obi-ontology/obi/issues/1568 label: add PBMC & PBMC specimen - id: https://api.github.com/repos/obi-ontology/obi/issues/1569 label: Reformulation of 'ontology' document header tag - id: https://api.github.com/repos/obi-ontology/obi/issues/157 label: specified ... relations - id: https://api.github.com/repos/obi-ontology/obi/issues/1570 label: ANOVA should be a subclass of statistical hypothesis test to be consistent with STATO - id: https://api.github.com/repos/obi-ontology/obi/issues/1571 label: antigen specific antibodies assay & data terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1572 label: Add enzyme activity level assays for CEBS - id: https://api.github.com/repos/obi-ontology/obi/issues/1573 label: corrects "a information" to "an information" in definitions - id: https://api.github.com/repos/obi-ontology/obi/issues/1574 label: moved 'assay kit' to 'device' - id: https://api.github.com/repos/obi-ontology/obi/issues/1575 label: topic for meeting discussion - handling of 'data format specification' - id: https://api.github.com/repos/obi-ontology/obi/issues/1576 label: 'Annotation: hasDbXref option?' - id: https://api.github.com/repos/obi-ontology/obi/issues/1577 label: 'NTR: data items - specimen storage' - id: https://api.github.com/repos/obi-ontology/obi/issues/1578 label: 'NTR: data items - sampling location' - id: https://api.github.com/repos/obi-ontology/obi/issues/1579 label: 'NTR: data items - gene detection output' - id: https://api.github.com/repos/obi-ontology/obi/issues/158 label: genotyping definition - id: https://api.github.com/repos/obi-ontology/obi/issues/1580 label: 'NTR: devices - brushes, vials, etc.' - id: https://api.github.com/repos/obi-ontology/obi/issues/1581 label: 'NTR: devices - specimen container' - id: https://api.github.com/repos/obi-ontology/obi/issues/1582 label: 'NTR: sample collection - type of sample' - id: https://api.github.com/repos/obi-ontology/obi/issues/1583 label: 'NTR: virus transport medium' - id: https://api.github.com/repos/obi-ontology/obi/issues/1584 label: 'NTR: swab, wet wipe, personal protective gown' - id: https://api.github.com/repos/obi-ontology/obi/issues/1585 label: Requesting additional bath terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1586 label: Is OBI is suitable home for specific clinical outcome assessments? - id: https://api.github.com/repos/obi-ontology/obi/issues/1587 label: FAIRE-seq assay - id: https://api.github.com/repos/obi-ontology/obi/issues/1588 label: 'Faire-seq assay ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1589 label: add Mosquito Magnet Liberty Plus - id: https://api.github.com/repos/obi-ontology/obi/issues/159 label: _cloning placeholder - id: https://api.github.com/repos/obi-ontology/obi/issues/1590 label: "NTR: \u2018tumor challenge\u2019 and \u2018in vivo challenge\u2019" - id: https://api.github.com/repos/obi-ontology/obi/issues/1591 label: Ensure obi-base.owl is updated, fix whitespace error - id: https://api.github.com/repos/obi-ontology/obi/issues/1592 label: subtypes of electrophysiology assay - id: https://api.github.com/repos/obi-ontology/obi/issues/1593 label: OBI_00001975 has 8 characters in identifier - id: https://api.github.com/repos/obi-ontology/obi/issues/1594 label: 'NTR: epitope protection assays ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1595 label: 'remove axiom: local field potential recording has-input that is located *only* in brain' - id: https://api.github.com/repos/obi-ontology/obi/issues/1596 label: Uberon import loses crucial linking information - id: https://api.github.com/repos/obi-ontology/obi/issues/1597 label: Refresh RO import - id: https://api.github.com/repos/obi-ontology/obi/issues/1598 label: '''organism identification assay'' definition change' - id: https://api.github.com/repos/obi-ontology/obi/issues/1599 label: Null values for scalar value specifications - id: https://api.github.com/repos/obi-ontology/obi/issues/16 label: Write script to allocate ids to obi terms w/out them - id: https://api.github.com/repos/obi-ontology/obi/issues/160 label: 'typo in class label: extra cellular electrophysilogy recordi' - id: https://api.github.com/repos/obi-ontology/obi/issues/1600 label: changes to biobank-specimens template - id: https://api.github.com/repos/obi-ontology/obi/issues/1601 label: 'NTR: epitope intervention challenge assays ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1602 label: 'NTR: cow-baited arthropod trap' - id: https://api.github.com/repos/obi-ontology/obi/issues/1603 label: 'NTR: Gram stain assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1604 label: Added 'synaptosome preparation process' OBI:0003384 - id: https://api.github.com/repos/obi-ontology/obi/issues/1605 label: Provide ORCID for editors in term request - id: https://api.github.com/repos/obi-ontology/obi/issues/1606 label: 'missing textual definitions ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1607 label: 'NTRs: lymph specimen, digestive tract specimen ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1608 label: OBI:0002781 and OBI:0002783 have the same EquivalentTo - id: https://api.github.com/repos/obi-ontology/obi/issues/1609 label: Remove annotation command from obi.obo generation - id: https://api.github.com/repos/obi-ontology/obi/issues/161 label: weight assessment - id: https://api.github.com/repos/obi-ontology/obi/issues/1610 label: Some OBI terms not getting displayed in tree view in OLS - id: https://api.github.com/repos/obi-ontology/obi/issues/1611 label: 'NTR: interleukin-25 production by T cells assays' - id: https://api.github.com/repos/obi-ontology/obi/issues/1612 label: unsatisfiability from COB interaction - id: https://api.github.com/repos/obi-ontology/obi/issues/1613 label: in vivo immune-epitope bio activity assays - id: https://api.github.com/repos/obi-ontology/obi/issues/1614 label: Design pattern for protocol terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1615 label: Axioms for 'organism identification datum' and its children - id: https://api.github.com/repos/obi-ontology/obi/issues/1616 label: edit def. of organism id terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1617 label: add 'Gram stain assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1618 label: add 'cow-baited arthropod trap' - id: https://api.github.com/repos/obi-ontology/obi/issues/1619 label: lymph specimen, digestive tract specimen - id: https://api.github.com/repos/obi-ontology/obi/issues/162 label: waiting - problematic - id: https://api.github.com/repos/obi-ontology/obi/issues/1620 label: 'NTR: T cell cytokine production bioassay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1621 label: Format term-tracker-item annotations consistently - id: https://api.github.com/repos/obi-ontology/obi/issues/1622 label: IL-25 assays and Tcell bioassays - id: https://api.github.com/repos/obi-ontology/obi/issues/1623 label: fixes term-tracker format for OBI terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1624 label: Clarification regarding identifier modeling pattern in OBI (and OBO) needed - id: https://api.github.com/repos/obi-ontology/obi/issues/1625 label: Changes to the 'material to be added role' term and its related terms. - id: https://api.github.com/repos/obi-ontology/obi/issues/1626 label: generality of class "device" - id: https://api.github.com/repos/obi-ontology/obi/issues/1627 label: Please roll back merged change to OBI:0001624 (keep definition in current release) - id: https://api.github.com/repos/obi-ontology/obi/issues/1628 label: remove fluorescence imaging assays as children of fluorescence detection assay - id: https://api.github.com/repos/obi-ontology/obi/issues/1629 label: 'NTR: control specimen role' - id: https://api.github.com/repos/obi-ontology/obi/issues/163 label: specified ... relations - id: https://api.github.com/repos/obi-ontology/obi/issues/1630 label: Revert "edit def. of organism id terms" - id: https://api.github.com/repos/obi-ontology/obi/issues/1631 label: Release Candidate 2022-11-14 - id: https://api.github.com/repos/obi-ontology/obi/issues/1632 label: mistake in textual definition of microbiology data terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1633 label: 'NTR: organism detection assay (more general than OBI:0001624)' - id: https://api.github.com/repos/obi-ontology/obi/issues/1634 label: 'term update: genome coverage' - id: https://api.github.com/repos/obi-ontology/obi/issues/1635 label: The sacrilege of contemplating the renaming of "assay" - id: https://api.github.com/repos/obi-ontology/obi/issues/1636 label: Release Candidate 2022-12-14 - id: https://api.github.com/repos/obi-ontology/obi/issues/1637 label: 'NTR: COA Terms' - id: https://api.github.com/repos/obi-ontology/obi/issues/1638 label: OBI is adding invalid subclass axioms to ChEBI - id: https://api.github.com/repos/obi-ontology/obi/issues/1639 label: obi-base.owl includes rdfs:labels for terms from other ontologies - id: https://api.github.com/repos/obi-ontology/obi/issues/164 label: Fix wiki links to obolibrary instead of obfoundry - id: https://api.github.com/repos/obi-ontology/obi/issues/1640 label: changes to organism detection terms in assay module - id: https://api.github.com/repos/obi-ontology/obi/issues/1641 label: Added FARS COA Terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1642 label: has_specified_input axioms & analyte/measurand roles - id: https://api.github.com/repos/obi-ontology/obi/issues/1643 label: Issue 1456 - id: https://api.github.com/repos/obi-ontology/obi/issues/1644 label: changes to "material to be added role" - id: https://api.github.com/repos/obi-ontology/obi/issues/1645 label: tandom mass spectrometry changes - id: https://api.github.com/repos/obi-ontology/obi/issues/1646 label: move 'ANOVA' under 'statistical hypothesis test' - id: https://api.github.com/repos/obi-ontology/obi/issues/1647 label: remove universal restriction axiom in 'local field potential recording' - id: https://api.github.com/repos/obi-ontology/obi/issues/1648 label: OBI_0200062 & OBI_0200064 have misleading labels - id: https://api.github.com/repos/obi-ontology/obi/issues/1649 label: improve term label of OBI_0200062 & OBI_0200064 - id: https://api.github.com/repos/obi-ontology/obi/issues/165 label: '''taking specimen from organism''' - id: https://api.github.com/repos/obi-ontology/obi/issues/1650 label: Equivalent axiom for 'antigen specific antibodies in blood assay datum' - id: https://api.github.com/repos/obi-ontology/obi/issues/1651 label: 'NTR: resting clay pot trap' - id: https://api.github.com/repos/obi-ontology/obi/issues/1652 label: Adding new COA terms under Assay>physical examination of individual - id: https://api.github.com/repos/obi-ontology/obi/issues/1653 label: Assays.tsv template update request - id: https://api.github.com/repos/obi-ontology/obi/issues/1654 label: 'NTR: human odor baited light trap' - id: https://api.github.com/repos/obi-ontology/obi/issues/1655 label: improve 'physical examination of individual' - id: https://api.github.com/repos/obi-ontology/obi/issues/1656 label: Detection data term changes - id: https://api.github.com/repos/obi-ontology/obi/issues/1657 label: remove universal restriction in "local filed potential recording" - id: https://api.github.com/repos/obi-ontology/obi/issues/1658 label: add 'analysis' to OBI_0200062 & OBI_0200064 labels - id: https://api.github.com/repos/obi-ontology/obi/issues/1659 label: remove annotation whitespace - id: https://api.github.com/repos/obi-ontology/obi/issues/166 label: specimen creation - id: https://api.github.com/repos/obi-ontology/obi/issues/1660 label: biobank-specimens template update - id: https://api.github.com/repos/obi-ontology/obi/issues/1661 label: update fluorescence imaging assays - id: https://api.github.com/repos/obi-ontology/obi/issues/1662 label: syringe, injection, and injection function - id: https://api.github.com/repos/obi-ontology/obi/issues/1663 label: Fail on equivalent named classes - id: https://api.github.com/repos/obi-ontology/obi/issues/1664 label: 'Update description of OBI. Fixes #964' - id: https://api.github.com/repos/obi-ontology/obi/issues/1665 label: Possible to improve OBI_0002131? - id: https://api.github.com/repos/obi-ontology/obi/issues/1666 label: Refine definition for OBI:irradiation to include notion of necessarily being a planned process - id: https://api.github.com/repos/obi-ontology/obi/issues/1667 label: Add annotations for new RBO:radiation class - id: https://api.github.com/repos/obi-ontology/obi/issues/1668 label: 'NTR: breath specimen, breath assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/1669 label: 'Fix #1639 bug with base file' - id: https://api.github.com/repos/obi-ontology/obi/issues/167 label: mass spectrometry/mass spec assay - duplication - id: https://api.github.com/repos/obi-ontology/obi/issues/1670 label: Release Candidate 2023-03-10 - id: https://api.github.com/repos/obi-ontology/obi/issues/1671 label: Try ripping out non-OBI axioms and merging in COB - id: https://api.github.com/repos/obi-ontology/obi/issues/1672 label: Add release scripts - id: https://api.github.com/repos/obi-ontology/obi/issues/1673 label: Added terms for raw MRI acquisition and reconstruction to anatomical MRI - id: https://api.github.com/repos/obi-ontology/obi/issues/1674 label: tweak specimen collection device def - id: https://api.github.com/repos/obi-ontology/obi/issues/1675 label: Commit with protege 5.6.1 - id: https://api.github.com/repos/obi-ontology/obi/issues/1676 label: Update ROBOT to 1.9.3 with OWLAPI 4.5.25 - id: https://api.github.com/repos/obi-ontology/obi/issues/1677 label: '#1512' - id: https://api.github.com/repos/obi-ontology/obi/issues/1678 label: update definition of 'waiting' - id: https://api.github.com/repos/obi-ontology/obi/issues/1679 label: 'genome coverage defn simplification #1634' - id: https://api.github.com/repos/obi-ontology/obi/issues/168 label: grouping processes - assays vs process - granularity issue - id: https://api.github.com/repos/obi-ontology/obi/issues/1680 label: 'NTR: additional microbiology assay/datum terms' - id: https://api.github.com/repos/obi-ontology/obi/issues/1681 label: Second round of `robot convert` with new OWLAPI - id: https://api.github.com/repos/obi-ontology/obi/issues/1682 label: update 'epitope' definition - id: https://api.github.com/repos/obi-ontology/obi/issues/1683 label: 'Proposed Revision of Assay Definition ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1684 label: 'NTR: spectrometry analysis terms ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1685 label: 'NTR: liquid chromatography' - id: https://api.github.com/repos/obi-ontology/obi/issues/1686 label: limit of detection terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1687 label: 'liquid chromatography terms ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1688 label: 'revision of antigen and antigen role terms ' - id: https://api.github.com/repos/obi-ontology/obi/issues/1689 label: add 'odor baited CDC light trap' - id: https://api.github.com/repos/obi-ontology/obi/issues/169 label: acquisition - id: https://api.github.com/repos/obi-ontology/obi/issues/1690 label: embryonic or in ovo study design - id: https://api.github.com/repos/obi-ontology/obi/issues/1691 label: revise assay textual definition - id: https://api.github.com/repos/obi-ontology/obi/issues/1692 label: Some planned processes not defined in terms of 'planned process' - id: https://api.github.com/repos/obi-ontology/obi/issues/1693 label: Can biological and technical replicates be used for environmental metagenome samples? - id: https://api.github.com/repos/obi-ontology/obi/issues/1694 label: relabel donor to donor role - id: https://api.github.com/repos/obi-ontology/obi/issues/1695 label: revise range for is_manufactured_by - id: https://api.github.com/repos/obi-ontology/obi/issues/1696 label: README links to GitHub wiki instead of the OBI homepage for documentation - id: https://api.github.com/repos/obi-ontology/obi/issues/1697 label: replace documentation link to point to homepage instead of GiHub wiki - id: https://api.github.com/repos/obi-ontology/obi/issues/1698 label: relabel donor class - id: https://api.github.com/repos/obi-ontology/obi/issues/1699 label: 'new PLAC-seq assay ' - id: https://api.github.com/repos/obi-ontology/obi/issues/17 label: Change OBI namespace to use purl.org - id: https://api.github.com/repos/obi-ontology/obi/issues/170 label: manufacturing defined class - id: https://api.github.com/repos/obi-ontology/obi/issues/1700 label: Edits to planned process textual defs - id: https://api.github.com/repos/obi-ontology/obi/issues/1701 label: add 'resting clay pot trap' - id: https://api.github.com/repos/obi-ontology/obi/issues/1702 label: Changes to 'physical examination of individual' - id: https://api.github.com/repos/obi-ontology/obi/issues/1703 label: 'NTR: routes of administration' - id: https://api.github.com/repos/obi-ontology/obi/issues/1704 label: New RO "measures characteristic" applied to assay and COB characteristic - id: https://api.github.com/repos/obi-ontology/obi/issues/1705 label: add new microbiology assay & data terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1706 label: Template for 'administration of substance in vivo' terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1707 label: Flow cytometry 1007 - id: https://api.github.com/repos/obi-ontology/obi/issues/1708 label: 'Suggestion of label change for OBI_0001909: conclusion based on data' - id: https://api.github.com/repos/obi-ontology/obi/issues/1709 label: 'Discrepancy between definition and axiomatization for OBI_0000338: drawing a conclusion based on data' - id: https://api.github.com/repos/obi-ontology/obi/issues/171 label: qualities without matching processes - id: https://api.github.com/repos/obi-ontology/obi/issues/1710 label: 'Suggestion of definition modification for OBI_0003366: organism diagnostic process' - id: https://api.github.com/repos/obi-ontology/obi/issues/1711 label: 'NTR : Illumina NextSeq 1000' - id: https://api.github.com/repos/obi-ontology/obi/issues/1712 label: The money's data on the personalised process of it valuation in substitition of investment to make capital gains - id: https://api.github.com/repos/obi-ontology/obi/issues/1713 label: Fix link to documentation - id: https://api.github.com/repos/obi-ontology/obi/issues/1714 label: Add past tense to definition of OBI:0003366 - id: https://api.github.com/repos/obi-ontology/obi/issues/1715 label: Improve OBI:0302889 'irradiation' - id: https://api.github.com/repos/obi-ontology/obi/issues/1716 label: Fix rdfs:label for 'planned irradiation' - id: https://api.github.com/repos/obi-ontology/obi/issues/1717 label: Release Candidate 2023-07-10 - id: https://api.github.com/repos/obi-ontology/obi/issues/1718 label: Problems with OBI "processed material" - id: https://api.github.com/repos/obi-ontology/obi/issues/1719 label: OBI:0003580 fix - id: https://api.github.com/repos/obi-ontology/obi/issues/172 label: metabolic profiling - id: https://api.github.com/repos/obi-ontology/obi/issues/1720 label: Adding new terms for HCC - id: https://api.github.com/repos/obi-ontology/obi/issues/1721 label: Adding hypertension grade and QCM terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1722 label: Updating text of planned process terms - id: https://api.github.com/repos/obi-ontology/obi/issues/1723 label: IDO and OBI 'pathogen role' - id: https://api.github.com/repos/obi-ontology/obi/issues/1724 label: MERFISH addition to OBI - id: https://api.github.com/repos/obi-ontology/obi/issues/1725 label: smFISH Addition - id: https://api.github.com/repos/obi-ontology/obi/issues/1726 label: Single-cell BCR/TCR assays - id: https://api.github.com/repos/obi-ontology/obi/issues/173 label: synthesis - id: https://api.github.com/repos/obi-ontology/obi/issues/174 label: analyte assay - missing child terms - id: https://api.github.com/repos/obi-ontology/obi/issues/175 label: sequencing/DNA sequencing - id: https://api.github.com/repos/obi-ontology/obi/issues/176 label: MIREOT of EFO terms - id: https://api.github.com/repos/obi-ontology/obi/issues/177 label: generation of genetic mutations - id: https://api.github.com/repos/obi-ontology/obi/issues/178 label: realizes - id: https://api.github.com/repos/obi-ontology/obi/issues/179 label: Clean up in _bin role branch - id: https://api.github.com/repos/obi-ontology/obi/issues/18 label: Definition of 'hypothesis' needs work - id: https://api.github.com/repos/obi-ontology/obi/issues/180 label: Reduce DT Use Case to 2 paragraphs - id: https://api.github.com/repos/obi-ontology/obi/issues/181 label: Clinical study use case - id: https://api.github.com/repos/obi-ontology/obi/issues/182 label: IEDB Use Case - id: https://api.github.com/repos/obi-ontology/obi/issues/183 label: Produce Use Case for manuscript - id: https://api.github.com/repos/obi-ontology/obi/issues/184 label: Update of figure 1 in manuscript - id: https://api.github.com/repos/obi-ontology/obi/issues/185 label: Add A Single 'Complete' Class to manuscript - id: https://api.github.com/repos/obi-ontology/obi/issues/186 label: Supplementary Table of terms used in manuscript - id: https://api.github.com/repos/obi-ontology/obi/issues/187 label: remove refs to obsolete terms - id: https://api.github.com/repos/obi-ontology/obi/issues/188 label: obsolete digital entities - id: https://api.github.com/repos/obi-ontology/obi/issues/189 label: administer substance in vivo - id: https://api.github.com/repos/obi-ontology/obi/issues/19 label: objective terms from DT - id: https://api.github.com/repos/obi-ontology/obi/issues/190 label: administer substance in vivo - id: https://api.github.com/repos/obi-ontology/obi/issues/191 label: use of plurals in the manuscript - id: https://api.github.com/repos/obi-ontology/obi/issues/192 label: check for obsolete term usage at release - id: https://api.github.com/repos/obi-ontology/obi/issues/193 label: Remove empty annotation properties - id: https://api.github.com/repos/obi-ontology/obi/issues/194 label: remove references to realizeable information entity - id: https://api.github.com/repos/obi-ontology/obi/issues/195 label: sequence macromolecule - id: https://api.github.com/repos/obi-ontology/obi/issues/196 label: methylation state - id: https://api.github.com/repos/obi-ontology/obi/issues/197 label: cross species anatomy - id: https://api.github.com/repos/obi-ontology/obi/issues/198 label: reference to anatomical entity - id: https://api.github.com/repos/obi-ontology/obi/issues/199 label: error in fig 2 - id: https://api.github.com/repos/obi-ontology/obi/issues/2 label: person and devolution of organization ontology - id: https://api.github.com/repos/obi-ontology/obi/issues/20 label: Objective vs. Objective-neutral Planned Processes - id: https://api.github.com/repos/obi-ontology/obi/issues/200 label: clustering paragraph paper - clean up of objectives for dt - id: https://api.github.com/repos/obi-ontology/obi/issues/201 label: IAO section of paper - id: https://api.github.com/repos/obi-ontology/obi/issues/202 label: add glucometer to OBI for paper - id: https://api.github.com/repos/obi-ontology/obi/issues/203 label: person/Homo sapiens in OBI - id: https://api.github.com/repos/obi-ontology/obi/issues/204 label: Find protocol example objective - id: https://api.github.com/repos/obi-ontology/obi/issues/205 label: 'organization examples - manufacturer, ' - id: https://api.github.com/repos/obi-ontology/obi/issues/206 label: Authorship, Affiliations, Funding - id: https://api.github.com/repos/obi-ontology/obi/issues/207 label: ISA-tools use case - id: https://api.github.com/repos/obi-ontology/obi/issues/208 label: clean up function vs measure data function - id: https://api.github.com/repos/obi-ontology/obi/issues/209 label: cell hierarchy needs work - id: https://api.github.com/repos/obi-ontology/obi/issues/21 label: 'information entities: model number, serial number' - id: https://api.github.com/repos/obi-ontology/obi/issues/210 label: disease and iedb disease - id: https://api.github.com/repos/obi-ontology/obi/issues/211 label: ONTIE relations - id: https://api.github.com/repos/obi-ontology/obi/issues/212 label: _unclassifed in dt branch - move multiple testing terms - id: https://api.github.com/repos/obi-ontology/obi/issues/213 label: enzymatic amplification / PCR - id: https://api.github.com/repos/obi-ontology/obi/issues/214 label: instument clean up - processed material - id: https://api.github.com/repos/obi-ontology/obi/issues/215 label: roles review - id: https://api.github.com/repos/obi-ontology/obi/issues/216 label: change drug def and add a defined term 'approved drug'' - id: https://api.github.com/repos/obi-ontology/obi/issues/217 label: 'to mireot: vaccine, vaccination, host, pathogen' - id: https://api.github.com/repos/obi-ontology/obi/issues/218 label: BIRN placeholder term remapping - id: https://api.github.com/repos/obi-ontology/obi/issues/219 label: 'duplicate terms in ontie merge - AR ' - id: https://api.github.com/repos/obi-ontology/obi/issues/22 label: Hypothesis Testing Terms - id: https://api.github.com/repos/obi-ontology/obi/issues/220 label: 'epitope: role/disposition/quality?' - id: https://api.github.com/repos/obi-ontology/obi/issues/221 label: Add relation to Student t-test - id: https://api.github.com/repos/obi-ontology/obi/issues/222 label: Change import order of use case - id: https://api.github.com/repos/obi-ontology/obi/issues/223 label: review target of material additon - id: https://api.github.com/repos/obi-ontology/obi/issues/224 label: nucleic acid sequence - id: https://api.github.com/repos/obi-ontology/obi/issues/225 label: flow cytometry terms - id: https://api.github.com/repos/obi-ontology/obi/issues/226 label: reagent (now label) roles - id: https://api.github.com/repos/obi-ontology/obi/issues/227 label: executes relation - id: https://api.github.com/repos/obi-ontology/obi/issues/228 label: _under_discussion - remove parent and refactor child terms - id: https://api.github.com/repos/obi-ontology/obi/issues/229 label: helper classes related to device - id: https://api.github.com/repos/obi-ontology/obi/issues/23 label: Need OBI Rleation examples in OWL - id: https://api.github.com/repos/obi-ontology/obi/issues/230 label: Genepattern instances for use case - id: https://api.github.com/repos/obi-ontology/obi/issues/231 label: curation status - id: https://api.github.com/repos/obi-ontology/obi/issues/232 label: 'Outreach: Parasite Experiment Ontology' - id: https://api.github.com/repos/obi-ontology/obi/issues/233 label: ignore this - id: https://api.github.com/repos/obi-ontology/obi/issues/234 label: perturbe function, typo? - id: https://api.github.com/repos/obi-ontology/obi/issues/235 label: vortexer - id: https://api.github.com/repos/obi-ontology/obi/issues/236 label: 'measured data item / measurement datum ' - id: https://api.github.com/repos/obi-ontology/obi/issues/237 label: 'add process: group selection' - id: https://api.github.com/repos/obi-ontology/obi/issues/238 label: extra cellular /intra cellular physiology recording - id: https://api.github.com/repos/obi-ontology/obi/issues/239 label: Clean up of Material Entity/entities import - id: https://api.github.com/repos/obi-ontology/obi/issues/24 label: add "role" suffix to roles - id: https://api.github.com/repos/obi-ontology/obi/issues/240 label: Metadata cleanup - id: https://api.github.com/repos/obi-ontology/obi/issues/241 label: Minimal Metadata on wiki - id: https://api.github.com/repos/obi-ontology/obi/issues/242 label: Clean up of Min Metadata wiki page - id: https://api.github.com/repos/obi-ontology/obi/issues/243 label: URIs for Definition Source/Editor - id: https://api.github.com/repos/obi-ontology/obi/issues/244 label: cloning vectors defined classes - id: https://api.github.com/repos/obi-ontology/obi/issues/245 label: Manufacturing - id: https://api.github.com/repos/obi-ontology/obi/issues/246 label: Removal of device, instrument and platform - id: https://api.github.com/repos/obi-ontology/obi/issues/247 label: chromatography instrument - id: https://api.github.com/repos/obi-ontology/obi/issues/248 label: '"Objective specfiication" explanation ' - id: https://api.github.com/repos/obi-ontology/obi/issues/249 label: Portion of Glucose - id: https://api.github.com/repos/obi-ontology/obi/issues/25 label: investigation and trial site role - id: https://api.github.com/repos/obi-ontology/obi/issues/250 label: Obsolete Information processing - id: https://api.github.com/repos/obi-ontology/obi/issues/251 label: 'Discussion manuscript: IAO' - id: https://api.github.com/repos/obi-ontology/obi/issues/252 label: Study Interpretation - id: https://api.github.com/repos/obi-ontology/obi/issues/253 label: Conclusion and Study Interpretation - id: https://api.github.com/repos/obi-ontology/obi/issues/254 label: Children of Study Interpretation - id: https://api.github.com/repos/obi-ontology/obi/issues/255 label: Seperation centrifugation - id: https://api.github.com/repos/obi-ontology/obi/issues/256 label: Test Substance Role - id: https://api.github.com/repos/obi-ontology/obi/issues/257 label: Population in clinical use case - id: https://api.github.com/repos/obi-ontology/obi/issues/258 label: Human Subject Role - id: https://api.github.com/repos/obi-ontology/obi/issues/259 label: groiup assigment - id: https://api.github.com/repos/obi-ontology/obi/issues/26 label: replicon_function - id: https://api.github.com/repos/obi-ontology/obi/issues/260 label: clinical trials use case - id: https://api.github.com/repos/obi-ontology/obi/issues/261 label: TMP - id: https://api.github.com/repos/obi-ontology/obi/issues/262 label: clinical trials use case instance of interpreting data - id: https://api.github.com/repos/obi-ontology/obi/issues/263 label: curation status report - id: https://api.github.com/repos/obi-ontology/obi/issues/264 label: editor preferred term - id: https://api.github.com/repos/obi-ontology/obi/issues/265 label: script changes for all terms in paper change def ed to group - id: https://api.github.com/repos/obi-ontology/obi/issues/266 label: remove in branch core - id: https://api.github.com/repos/obi-ontology/obi/issues/267 label: depricate nutritional supplement role - id: https://api.github.com/repos/obi-ontology/obi/issues/268 label: usage examples - add these for all terms, and improve - id: https://api.github.com/repos/obi-ontology/obi/issues/269 label: deprecate laboratory role - id: https://api.github.com/repos/obi-ontology/obi/issues/27 label: plasmids (DNA and RNA) - id: https://api.github.com/repos/obi-ontology/obi/issues/270 label: deprecate medical monitor role - id: https://api.github.com/repos/obi-ontology/obi/issues/271 label: deprecate study committee role - id: https://api.github.com/repos/obi-ontology/obi/issues/272 label: deprecate medical instuitution - id: https://api.github.com/repos/obi-ontology/obi/issues/273 label: deprecate administrative unit - id: https://api.github.com/repos/obi-ontology/obi/issues/274 label: deprecate animal care technician role - id: https://api.github.com/repos/obi-ontology/obi/issues/275 label: deprecate clinical laboratory role - id: https://api.github.com/repos/obi-ontology/obi/issues/276 label: PI role paper - id: https://api.github.com/repos/obi-ontology/obi/issues/277 label: usage examples - add these for all terms, and improve - id: https://api.github.com/repos/obi-ontology/obi/issues/278 label: Role Cleanup cont- - id: https://api.github.com/repos/obi-ontology/obi/issues/279 label: Reagent role - id: https://api.github.com/repos/obi-ontology/obi/issues/28 label: cohort_role - id: https://api.github.com/repos/obi-ontology/obi/issues/280 label: need calibration process - id: https://api.github.com/repos/obi-ontology/obi/issues/281 label: rework several worker roles - id: https://api.github.com/repos/obi-ontology/obi/issues/282 label: deprecate children of supplier role - id: https://api.github.com/repos/obi-ontology/obi/issues/283 label: improve supplier role - id: https://api.github.com/repos/obi-ontology/obi/issues/284 label: report element in OBI from IAO - tracking only here - id: https://api.github.com/repos/obi-ontology/obi/issues/285 label: syringe - id: https://api.github.com/repos/obi-ontology/obi/issues/286 label: berichom(r), berichrome, berichrom - id: https://api.github.com/repos/obi-ontology/obi/issues/287 label: deprecate OBI patent content - id: https://api.github.com/repos/obi-ontology/obi/issues/288 label: 'add alternate term column to the table ' - id: https://api.github.com/repos/obi-ontology/obi/issues/289 label: modify "analyte assay" restriction - id: https://api.github.com/repos/obi-ontology/obi/issues/29 label: AnnotationProperty importedFrom - id: https://api.github.com/repos/obi-ontology/obi/issues/290 label: clustered data set vs data item - id: https://api.github.com/repos/obi-ontology/obi/issues/291 label: dependent/independent/controlled variable specification - id: https://api.github.com/repos/obi-ontology/obi/issues/292 label: add "amplified DNA" - id: https://api.github.com/repos/obi-ontology/obi/issues/293 label: consider moving mathematical features from OBI - id: https://api.github.com/repos/obi-ontology/obi/issues/294 label: class "investigation" - id: https://api.github.com/repos/obi-ontology/obi/issues/295 label: MIREOT issue - id: https://api.github.com/repos/obi-ontology/obi/issues/296 label: study result - id: https://api.github.com/repos/obi-ontology/obi/issues/297 label: measuring - id: https://api.github.com/repos/obi-ontology/obi/issues/298 label: author role - IAO task - id: https://api.github.com/repos/obi-ontology/obi/issues/299 label: cytokine response - id: https://api.github.com/repos/obi-ontology/obi/issues/3 label: antibody reagent - id: https://api.github.com/repos/obi-ontology/obi/issues/30 label: Vector Role - id: https://api.github.com/repos/obi-ontology/obi/issues/300 label: update manuscript supplemental table for fucoidan paper - id: https://api.github.com/repos/obi-ontology/obi/issues/301 label: portion of glucose changed to glucose in solution in paper - id: https://api.github.com/repos/obi-ontology/obi/issues/302 label: test substance role in paper - id: https://api.github.com/repos/obi-ontology/obi/issues/303 label: data sets, bundle for repository, investigation docs - id: https://api.github.com/repos/obi-ontology/obi/issues/304 label: Placeholder - Direct subclasses of "chromatography column" - id: https://api.github.com/repos/obi-ontology/obi/issues/305 label: speciment creation objective - id: https://api.github.com/repos/obi-ontology/obi/issues/306 label: polymer - id: https://api.github.com/repos/obi-ontology/obi/issues/307 label: _MSI terms - id: https://api.github.com/repos/obi-ontology/obi/issues/308 label: conferred qualitites - id: https://api.github.com/repos/obi-ontology/obi/issues/309 label: _under discussion role - id: https://api.github.com/repos/obi-ontology/obi/issues/31 label: genetic information content - id: https://api.github.com/repos/obi-ontology/obi/issues/310 label: deprecate latitude and longitude - id: https://api.github.com/repos/obi-ontology/obi/issues/311 label: rc1.0 release notes and documentation - id: https://api.github.com/repos/obi-ontology/obi/issues/312 label: informed consent process - id: https://api.github.com/repos/obi-ontology/obi/issues/313 label: stimulus role to add - id: https://api.github.com/repos/obi-ontology/obi/issues/314 label: Bruker NMR stuff needs is_manufactured_by - id: https://api.github.com/repos/obi-ontology/obi/issues/315 label: too generic labels for NMR instruments - id: https://api.github.com/repos/obi-ontology/obi/issues/316 label: blank property values - id: https://api.github.com/repos/obi-ontology/obi/issues/317 label: duplicate - adjuvent role, adjuvant role - id: https://api.github.com/repos/obi-ontology/obi/issues/318 label: roles "played" - id: https://api.github.com/repos/obi-ontology/obi/issues/319 label: source pending - id: https://api.github.com/repos/obi-ontology/obi/issues/32 label: sample - id: https://api.github.com/repos/obi-ontology/obi/issues/320 label: editor notes marked "resolve:" - id: https://api.github.com/repos/obi-ontology/obi/issues/321 label: example of usage "to be added" - id: https://api.github.com/repos/obi-ontology/obi/issues/322 label: classes below documenting dubious - id: https://api.github.com/repos/obi-ontology/obi/issues/323 label: concentration specification - id: https://api.github.com/repos/obi-ontology/obi/issues/324 label: rename 'image stream' to 'Amnis ImageStream' - id: https://api.github.com/repos/obi-ontology/obi/issues/325 label: DS comments "Is this class justified" - id: https://api.github.com/repos/obi-ontology/obi/issues/326 label: entity of organismal origin - id: https://api.github.com/repos/obi-ontology/obi/issues/327 label: obsolete_hyphenated NMR instrument platform - id: https://api.github.com/repos/obi-ontology/obi/issues/328 label: obsolete_under_discussion - id: https://api.github.com/repos/obi-ontology/obi/issues/329 label: review CDISC editor notes - id: https://api.github.com/repos/obi-ontology/obi/issues/33 label: sample_material - id: https://api.github.com/repos/obi-ontology/obi/issues/330 label: antigen role/assay antigen role - id: https://api.github.com/repos/obi-ontology/obi/issues/331 label: detector reagent role - id: https://api.github.com/repos/obi-ontology/obi/issues/332 label: integration with IDO - id: https://api.github.com/repos/obi-ontology/obi/issues/333 label: chemical solution - id: https://api.github.com/repos/obi-ontology/obi/issues/334 label: inter-rater reliability - id: https://api.github.com/repos/obi-ontology/obi/issues/335 label: improve mireot to get term provenance - id: https://api.github.com/repos/obi-ontology/obi/issues/336 label: duplicate - acquisition, object acquisition - id: https://api.github.com/repos/obi-ontology/obi/issues/337 label: process cleaning - id: https://api.github.com/repos/obi-ontology/obi/issues/338 label: Curation status are not "ready for release" - id: https://api.github.com/repos/obi-ontology/obi/issues/339 label: Two terms used in the paper - id: https://api.github.com/repos/obi-ontology/obi/issues/34 label: sample_data - id: https://api.github.com/repos/obi-ontology/obi/issues/340 label: glucose molecules/glucose in solution - id: https://api.github.com/repos/obi-ontology/obi/issues/341 label: add ed note and alternate terms to hypothesis and conclusion - id: https://api.github.com/repos/obi-ontology/obi/issues/342 label: quality hierarchy - id: https://api.github.com/repos/obi-ontology/obi/issues/343 label: 'term request: administration of infectious agent to host' - id: https://api.github.com/repos/obi-ontology/obi/issues/344 label: vector mediated expression - id: https://api.github.com/repos/obi-ontology/obi/issues/345 label: yeast artifical chromosome vector - id: https://api.github.com/repos/obi-ontology/obi/issues/346 label: needle assembly - id: https://api.github.com/repos/obi-ontology/obi/issues/347 label: administering substance in vivo - id: https://api.github.com/repos/obi-ontology/obi/issues/348 label: antigen presentation function - id: https://api.github.com/repos/obi-ontology/obi/issues/349 label: antithrombin-III (AT-III) berichrome assay - id: https://api.github.com/repos/obi-ontology/obi/issues/35 label: specimen - id: https://api.github.com/repos/obi-ontology/obi/issues/350 label: artificially induced reverse transcription - id: https://api.github.com/repos/obi-ontology/obi/issues/351 label: blood plasma - id: https://api.github.com/repos/obi-ontology/obi/issues/352 label: bruker autoclean system - id: https://api.github.com/repos/obi-ontology/obi/issues/353 label: CD8 receptor - id: https://api.github.com/repos/obi-ontology/obi/issues/354 label: cell lysate - id: https://api.github.com/repos/obi-ontology/obi/issues/355 label: cell lysis - id: https://api.github.com/repos/obi-ontology/obi/issues/356 label: cell permeabilization - id: https://api.github.com/repos/obi-ontology/obi/issues/357 label: cervical dislocation - id: https://api.github.com/repos/obi-ontology/obi/issues/358 label: cloning plasmid - id: https://api.github.com/repos/obi-ontology/obi/issues/359 label: chromatography devices - id: https://api.github.com/repos/obi-ontology/obi/issues/36 label: genetic modification - id: https://api.github.com/repos/obi-ontology/obi/issues/360 label: data visualization - id: https://api.github.com/repos/obi-ontology/obi/issues/361 label: detector reagent role - id: https://api.github.com/repos/obi-ontology/obi/issues/362 label: DNA ligase - id: https://api.github.com/repos/obi-ontology/obi/issues/363 label: DNA sequence feature detection - id: https://api.github.com/repos/obi-ontology/obi/issues/364 label: edge weighting - id: https://api.github.com/repos/obi-ontology/obi/issues/365 label: ELISA - id: https://api.github.com/repos/obi-ontology/obi/issues/366 label: ELISPOT assay - id: https://api.github.com/repos/obi-ontology/obi/issues/367 label: eluate - id: https://api.github.com/repos/obi-ontology/obi/issues/368 label: evaluant role - id: https://api.github.com/repos/obi-ontology/obi/issues/369 label: fluorescent reporter intensity - id: https://api.github.com/repos/obi-ontology/obi/issues/37 label: derives_from - id: https://api.github.com/repos/obi-ontology/obi/issues/370 label: fragment derived from protein - id: https://api.github.com/repos/obi-ontology/obi/issues/371 label: 'immortal cell ' - id: https://api.github.com/repos/obi-ontology/obi/issues/372 label: investgation result report - id: https://api.github.com/repos/obi-ontology/obi/issues/373 label: label role - id: https://api.github.com/repos/obi-ontology/obi/issues/374 label: mathematical feature - id: https://api.github.com/repos/obi-ontology/obi/issues/375 label: multi well plate - id: https://api.github.com/repos/obi-ontology/obi/issues/376 label: objective_achieved_by - id: https://api.github.com/repos/obi-ontology/obi/issues/377 label: polymerization - id: https://api.github.com/repos/obi-ontology/obi/issues/378 label: 'primary structure terms ' - id: https://api.github.com/repos/obi-ontology/obi/issues/379 label: sequential design - id: https://api.github.com/repos/obi-ontology/obi/issues/38 label: supernatant-provider-pellet-precipitate-dye - id: https://api.github.com/repos/obi-ontology/obi/issues/380 label: survival assessment - id: https://api.github.com/repos/obi-ontology/obi/issues/381 label: synthesis - id: https://api.github.com/repos/obi-ontology/obi/issues/382 label: transgenic organism - id: https://api.github.com/repos/obi-ontology/obi/issues/383 label: 'meta data of principal investigator role ' - id: https://api.github.com/repos/obi-ontology/obi/issues/384 label: mouth - id: https://api.github.com/repos/obi-ontology/obi/issues/385 label: use BFO light for OBI - id: https://api.github.com/repos/obi-ontology/obi/issues/386 label: use iao-main for OBI - id: https://api.github.com/repos/obi-ontology/obi/issues/387 label: heart - id: https://api.github.com/repos/obi-ontology/obi/issues/388 label: IE with no defintions - id: https://api.github.com/repos/obi-ontology/obi/issues/389 label: Role with no definition - id: https://api.github.com/repos/obi-ontology/obi/issues/39 label: 'Dangling class: OBI_1000022' - id: https://api.github.com/repos/obi-ontology/obi/issues/390 label: DT terms with no definition - id: https://api.github.com/repos/obi-ontology/obi/issues/391 label: Process with no definition - id: https://api.github.com/repos/obi-ontology/obi/issues/392 label: Mat Entity with no definition - id: https://api.github.com/repos/obi-ontology/obi/issues/393 label: interrogation point and jet in air flow chamber - id: https://api.github.com/repos/obi-ontology/obi/issues/394 label: '''activated'' cells' - id: https://api.github.com/repos/obi-ontology/obi/issues/395 label: label / alternative term fixes - id: https://api.github.com/repos/obi-ontology/obi/issues/396 label: immortal cell - id: https://api.github.com/repos/obi-ontology/obi/issues/397 label: '''definition_source'' in definitions' - id: https://api.github.com/repos/obi-ontology/obi/issues/398 label: Data representational model (not good) - id: https://api.github.com/repos/obi-ontology/obi/issues/399 label: english/us spellings - id: https://api.github.com/repos/obi-ontology/obi/issues/4 label: utilizes_instrument and friends - id: https://api.github.com/repos/obi-ontology/obi/issues/40 label: terms without curation_status - id: https://api.github.com/repos/obi-ontology/obi/issues/400 label: Imported from annotation for ncbi tax classes - id: https://api.github.com/repos/obi-ontology/obi/issues/401 label: replace birnlex term with NIFSTD - id: https://api.github.com/repos/obi-ontology/obi/issues/402 label: diluted - id: https://api.github.com/repos/obi-ontology/obi/issues/403 label: predicted - id: https://api.github.com/repos/obi-ontology/obi/issues/404 label: deprecate dropout role - id: https://api.github.com/repos/obi-ontology/obi/issues/405 label: collection of recombinant vector - id: https://api.github.com/repos/obi-ontology/obi/issues/406 label: devices and instruments - id: https://api.github.com/repos/obi-ontology/obi/issues/407 label: manufacturing - id: https://api.github.com/repos/obi-ontology/obi/issues/408 label: laboratory - id: https://api.github.com/repos/obi-ontology/obi/issues/409 label: MIREOT of PATO terms - id: https://api.github.com/repos/obi-ontology/obi/issues/41 label: review cell now that we are using CL identifier - id: https://api.github.com/repos/obi-ontology/obi/issues/410 label: MIREOT of UO terms - id: https://api.github.com/repos/obi-ontology/obi/issues/411 label: MIREOT of SO terms - id: https://api.github.com/repos/obi-ontology/obi/issues/412 label: validated information - id: https://api.github.com/repos/obi-ontology/obi/issues/413 label: edited information - id: https://api.github.com/repos/obi-ontology/obi/issues/414 label: Duplicate label - id: https://api.github.com/repos/obi-ontology/obi/issues/415 label: Duplicate definitions - id: https://api.github.com/repos/obi-ontology/obi/issues/416 label: Definition format - id: https://api.github.com/repos/obi-ontology/obi/issues/417 label: Definition of fc_0022 - id: https://api.github.com/repos/obi-ontology/obi/issues/418 label: add dt defs from Tina B. - id: https://api.github.com/repos/obi-ontology/obi/issues/419 label: 'relation: results from' - id: https://api.github.com/repos/obi-ontology/obi/issues/42 label: feature - id: https://api.github.com/repos/obi-ontology/obi/issues/420 label: 'relation: supplies / is supplier from' - id: https://api.github.com/repos/obi-ontology/obi/issues/421 label: survival analysis data transformation - id: https://api.github.com/repos/obi-ontology/obi/issues/422 label: OBI_0600028 artificially induced reverse transcription - id: https://api.github.com/repos/obi-ontology/obi/issues/423 label: Add some plan/objective specification terms - id: https://api.github.com/repos/obi-ontology/obi/issues/424 label: deprecate label role and sub classes - id: https://api.github.com/repos/obi-ontology/obi/issues/425 label: deprecate trial statistician role - id: https://api.github.com/repos/obi-ontology/obi/issues/426 label: deprecate blinded medication role - id: https://api.github.com/repos/obi-ontology/obi/issues/427 label: deprecate vehicle role - id: https://api.github.com/repos/obi-ontology/obi/issues/428 label: deprecate regulatory role and subclasses - id: https://api.github.com/repos/obi-ontology/obi/issues/429 label: deprecate role of being first subject treated - id: https://api.github.com/repos/obi-ontology/obi/issues/43 label: has_feature - id: https://api.github.com/repos/obi-ontology/obi/issues/430 label: fix adjuvent role - id: https://api.github.com/repos/obi-ontology/obi/issues/431 label: pleae fix adjuvant - id: https://api.github.com/repos/obi-ontology/obi/issues/432 label: fix antigen role - id: https://api.github.com/repos/obi-ontology/obi/issues/433 label: fix carrier role - id: https://api.github.com/repos/obi-ontology/obi/issues/434 label: fix centrifuge pellet role - id: https://api.github.com/repos/obi-ontology/obi/issues/435 label: fix / create pellet role - id: https://api.github.com/repos/obi-ontology/obi/issues/436 label: if we are enforcing aristotelian defs please fix - id: https://api.github.com/repos/obi-ontology/obi/issues/437 label: please fix investigation agent - id: https://api.github.com/repos/obi-ontology/obi/issues/438 label: fix author role - id: https://api.github.com/repos/obi-ontology/obi/issues/439 label: please add process for responsible party - id: https://api.github.com/repos/obi-ontology/obi/issues/44 label: lavage - histological preparation - id: https://api.github.com/repos/obi-ontology/obi/issues/440 label: add processes for PI - id: https://api.github.com/repos/obi-ontology/obi/issues/441 label: processes for sponsor - id: https://api.github.com/repos/obi-ontology/obi/issues/442 label: please fix supplier role - id: https://api.github.com/repos/obi-ontology/obi/issues/443 label: fix manufacturer role - id: https://api.github.com/repos/obi-ontology/obi/issues/444 label: reassign biological vector for solution - id: https://api.github.com/repos/obi-ontology/obi/issues/445 label: logical def for cloning vector role - id: https://api.github.com/repos/obi-ontology/obi/issues/446 label: add logical def to OBI nutrient role - needs a process addin - id: https://api.github.com/repos/obi-ontology/obi/issues/447 label: please fix complete nutrient role - id: https://api.github.com/repos/obi-ontology/obi/issues/448 label: please fix culture medium role - id: https://api.github.com/repos/obi-ontology/obi/issues/449 label: please fix feed role - id: https://api.github.com/repos/obi-ontology/obi/issues/45 label: minimal metadata documentation - id: https://api.github.com/repos/obi-ontology/obi/issues/450 label: please fix patient role - id: https://api.github.com/repos/obi-ontology/obi/issues/451 label: please fix reagent role - defer till reagents fixed - id: https://api.github.com/repos/obi-ontology/obi/issues/452 label: lat and long - id: https://api.github.com/repos/obi-ontology/obi/issues/453 label: fix radiolabel role - id: https://api.github.com/repos/obi-ontology/obi/issues/454 label: fix primer role - id: https://api.github.com/repos/obi-ontology/obi/issues/455 label: fix solute role - id: https://api.github.com/repos/obi-ontology/obi/issues/456 label: fix solvent role - id: https://api.github.com/repos/obi-ontology/obi/issues/457 label: fix reference role - id: https://api.github.com/repos/obi-ontology/obi/issues/458 label: fix reference participant role - id: https://api.github.com/repos/obi-ontology/obi/issues/459 label: fix reference substance role - id: https://api.github.com/repos/obi-ontology/obi/issues/46 label: droplet_sorter - id: https://api.github.com/repos/obi-ontology/obi/issues/460 label: add logical def to material sample role - id: https://api.github.com/repos/obi-ontology/obi/issues/461 label: make specimen role defs consistent - id: https://api.github.com/repos/obi-ontology/obi/issues/462 label: fix specified input role - id: https://api.github.com/repos/obi-ontology/obi/issues/463 label: fix negative reference substance role - id: https://api.github.com/repos/obi-ontology/obi/issues/464 label: fix placebo role - id: https://api.github.com/repos/obi-ontology/obi/issues/465 label: fix positive reference substance role - id: https://api.github.com/repos/obi-ontology/obi/issues/466 label: sample_pop and material sample - are they different? - id: https://api.github.com/repos/obi-ontology/obi/issues/467 label: fix nucleic acid template role - id: https://api.github.com/repos/obi-ontology/obi/issues/468 label: fix restricting MHC role - id: https://api.github.com/repos/obi-ontology/obi/issues/469 label: fix calibration substance role - id: https://api.github.com/repos/obi-ontology/obi/issues/47 label: release + documentation - id: https://api.github.com/repos/obi-ontology/obi/issues/470 label: fix calibration substance role - id: https://api.github.com/repos/obi-ontology/obi/issues/471 label: cell line cell - id: https://api.github.com/repos/obi-ontology/obi/issues/472 label: immortalized cell line / immortal cell - id: https://api.github.com/repos/obi-ontology/obi/issues/473 label: children of cell culture - id: https://api.github.com/repos/obi-ontology/obi/issues/474 label: Collection - id: https://api.github.com/repos/obi-ontology/obi/issues/475 label: Cell culture as a collection - id: https://api.github.com/repos/obi-ontology/obi/issues/476 label: Glucose solution - id: https://api.github.com/repos/obi-ontology/obi/issues/477 label: review analyte assays - id: https://api.github.com/repos/obi-ontology/obi/issues/478 label: handedness assay and result datum - id: https://api.github.com/repos/obi-ontology/obi/issues/479 label: Three genetic characteristics terms needed by MO - id: https://api.github.com/repos/obi-ontology/obi/issues/48 label: Add xml comments to OWL file - id: https://api.github.com/repos/obi-ontology/obi/issues/480 label: Material type related terms needed by MO - id: https://api.github.com/repos/obi-ontology/obi/issues/481 label: PCR real time - id: https://api.github.com/repos/obi-ontology/obi/issues/482 label: 3 obsolete terms needed by MO - id: https://api.github.com/repos/obi-ontology/obi/issues/483 label: Add instrument terms from BRO - id: https://api.github.com/repos/obi-ontology/obi/issues/484 label: new dt terms from Melissa Haendel - id: https://api.github.com/repos/obi-ontology/obi/issues/485 label: participates_in - has participant - id: https://api.github.com/repos/obi-ontology/obi/issues/486 label: 'survival assessment: edit process issues' - id: https://api.github.com/repos/obi-ontology/obi/issues/487 label: host identifier - id: https://api.github.com/repos/obi-ontology/obi/issues/488 label: microarray platform - id: https://api.github.com/repos/obi-ontology/obi/issues/489 label: ChEBI nucleic acid related terms - id: https://api.github.com/repos/obi-ontology/obi/issues/49 label: Image/Graph Terms - id: https://api.github.com/repos/obi-ontology/obi/issues/490 label: chromatography column children - id: https://api.github.com/repos/obi-ontology/obi/issues/491 label: investigation agent role - id: https://api.github.com/repos/obi-ontology/obi/issues/492 label: Restrictions are needed to some RNA extraction process - id: https://api.github.com/repos/obi-ontology/obi/issues/493 label: albumin free serum - id: https://api.github.com/repos/obi-ontology/obi/issues/494 label: fasted subject / organism - id: https://api.github.com/repos/obi-ontology/obi/issues/495 label: blood plasma - id: https://api.github.com/repos/obi-ontology/obi/issues/496 label: hemagglutination - id: https://api.github.com/repos/obi-ontology/obi/issues/497 label: hemagglutination inhibition test - id: https://api.github.com/repos/obi-ontology/obi/issues/498 label: nasopharyngeal aspirate - id: https://api.github.com/repos/obi-ontology/obi/issues/499 label: 'Parent class: detection of specific nucleic acid' - id: https://api.github.com/repos/obi-ontology/obi/issues/5 label: genome version protocol parameter - id: https://api.github.com/repos/obi-ontology/obi/issues/50 label: MathML, SMILES, FieldML, SBML, and CellML formats - id: https://api.github.com/repos/obi-ontology/obi/issues/500 label: cell culture cytokine bioassay - id: https://api.github.com/repos/obi-ontology/obi/issues/501 label: cell proliferation assay - id: https://api.github.com/repos/obi-ontology/obi/issues/502 label: cytotoxicity assay - id: https://api.github.com/repos/obi-ontology/obi/issues/503 label: Nasal swab - id: https://api.github.com/repos/obi-ontology/obi/issues/504 label: functional complementation assay - id: https://api.github.com/repos/obi-ontology/obi/issues/505 label: 'Single-Nucleotide-Resolution Nucleic Acid Structure Mapping ' - id: https://api.github.com/repos/obi-ontology/obi/issues/506 label: resolution/resolving power - id: https://api.github.com/repos/obi-ontology/obi/issues/507 label: QTT for cell lines - id: https://api.github.com/repos/obi-ontology/obi/issues/508 label: killing and euthanize(ation) - id: https://api.github.com/repos/obi-ontology/obi/issues/509 label: some label compounds requested by MO - id: https://api.github.com/repos/obi-ontology/obi/issues/51 label: update imports documentation - id: https://api.github.com/repos/obi-ontology/obi/issues/510 label: 'Specimen related terms needed by MO ' - id: https://api.github.com/repos/obi-ontology/obi/issues/511 label: intracellular material detection by flow cytometry assay - id: https://api.github.com/repos/obi-ontology/obi/issues/512 label: cytometric bead array assay - id: https://api.github.com/repos/obi-ontology/obi/issues/513 label: Type IV hypersensitivity assay - id: https://api.github.com/repos/obi-ontology/obi/issues/514 label: radio immuno assay - id: https://api.github.com/repos/obi-ontology/obi/issues/515 label: Promoter activity detection by reporter gene assay - id: https://api.github.com/repos/obi-ontology/obi/issues/516 label: Definition of specimen is circular - id: https://api.github.com/repos/obi-ontology/obi/issues/517 label: lymph node cell under processed material - id: https://api.github.com/repos/obi-ontology/obi/issues/518 label: librairies under recombinant vector - id: https://api.github.com/repos/obi-ontology/obi/issues/519 label: specimen/processed material subclasses - id: https://api.github.com/repos/obi-ontology/obi/issues/52 label: evaluant - id: https://api.github.com/repos/obi-ontology/obi/issues/520 label: ' clinical diagnosis assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/521 label: bernoulli trial - id: https://api.github.com/repos/obi-ontology/obi/issues/522 label: types of DNA sequencing - id: https://api.github.com/repos/obi-ontology/obi/issues/523 label: animal feeding - id: https://api.github.com/repos/obi-ontology/obi/issues/524 label: data imputation is an averaging DT - id: https://api.github.com/repos/obi-ontology/obi/issues/525 label: surface plasmon resonance assay - id: https://api.github.com/repos/obi-ontology/obi/issues/526 label: X-ray crystallography assay - id: https://api.github.com/repos/obi-ontology/obi/issues/527 label: collecting specimen from organism - id: https://api.github.com/repos/obi-ontology/obi/issues/528 label: add synonym to assay terms - id: https://api.github.com/repos/obi-ontology/obi/issues/529 label: add GO terms - id: https://api.github.com/repos/obi-ontology/obi/issues/53 label: objective for processes - id: https://api.github.com/repos/obi-ontology/obi/issues/530 label: cloacal sample - id: https://api.github.com/repos/obi-ontology/obi/issues/531 label: new instrument classes in eagle-i ontology - id: https://api.github.com/repos/obi-ontology/obi/issues/532 label: tumor necrosis factor superfamily cytokine production - id: https://api.github.com/repos/obi-ontology/obi/issues/533 label: OBI_0200199 mass spec and gc as datatransformation - id: https://api.github.com/repos/obi-ontology/obi/issues/534 label: providing a service process for Eagle-i - id: https://api.github.com/repos/obi-ontology/obi/issues/535 label: service provider for Eagle-i - id: https://api.github.com/repos/obi-ontology/obi/issues/536 label: service consumer role for eagle-i - id: https://api.github.com/repos/obi-ontology/obi/issues/537 label: DNA sequencing service for Eagle-i - id: https://api.github.com/repos/obi-ontology/obi/issues/538 label: training process for Eagle-i - id: https://api.github.com/repos/obi-ontology/obi/issues/539 label: handedness assay and quality - id: https://api.github.com/repos/obi-ontology/obi/issues/54 label: suffix - naming conventions - id: https://api.github.com/repos/obi-ontology/obi/issues/540 label: handedness assays and related terms - id: https://api.github.com/repos/obi-ontology/obi/issues/541 label: centrifuge - id: https://api.github.com/repos/obi-ontology/obi/issues/542 label: 'colony forming units ' - id: https://api.github.com/repos/obi-ontology/obi/issues/543 label: efficacy of treatment assay and T-cell assay - id: https://api.github.com/repos/obi-ontology/obi/issues/544 label: device and reagent - id: https://api.github.com/repos/obi-ontology/obi/issues/545 label: read length - id: https://api.github.com/repos/obi-ontology/obi/issues/546 label: chemokine (C-X-C motif) ligand 9 production for IEDB - id: https://api.github.com/repos/obi-ontology/obi/issues/547 label: Quality Adjusted Life Year - id: https://api.github.com/repos/obi-ontology/obi/issues/548 label: should protein complex be subclass of molecular entity - id: https://api.github.com/repos/obi-ontology/obi/issues/549 label: agarose gel and polyacrylamide gel - id: https://api.github.com/repos/obi-ontology/obi/issues/55 label: Information entity - id: https://api.github.com/repos/obi-ontology/obi/issues/550 label: positioning function - id: https://api.github.com/repos/obi-ontology/obi/issues/551 label: add device part to device - id: https://api.github.com/repos/obi-ontology/obi/issues/552 label: resolve devices with no functions - id: https://api.github.com/repos/obi-ontology/obi/issues/553 label: add complete meta data for device class and subclasses - id: https://api.github.com/repos/obi-ontology/obi/issues/554 label: hybridoma cell line and related process - id: https://api.github.com/repos/obi-ontology/obi/issues/555 label: use uberon classes for anatomy - id: https://api.github.com/repos/obi-ontology/obi/issues/556 label: two process terms need by the MO users - id: https://api.github.com/repos/obi-ontology/obi/issues/557 label: developmental stage - id: https://api.github.com/repos/obi-ontology/obi/issues/558 label: gene dosage assay - id: https://api.github.com/repos/obi-ontology/obi/issues/559 label: gene silencing assay - id: https://api.github.com/repos/obi-ontology/obi/issues/56 label: Flow cytometry use case - id: https://api.github.com/repos/obi-ontology/obi/issues/560 label: electromobility shift assay - id: https://api.github.com/repos/obi-ontology/obi/issues/561 label: electroporation - id: https://api.github.com/repos/obi-ontology/obi/issues/562 label: So related terms in OBI - id: https://api.github.com/repos/obi-ontology/obi/issues/563 label: relation 'inheres_in' - id: https://api.github.com/repos/obi-ontology/obi/issues/564 label: Web Services - id: https://api.github.com/repos/obi-ontology/obi/issues/565 label: curation status of OBI terms for release - id: https://api.github.com/repos/obi-ontology/obi/issues/566 label: ChEBI related terms - id: https://api.github.com/repos/obi-ontology/obi/issues/567 label: multi issues from review - id: https://api.github.com/repos/obi-ontology/obi/issues/568 label: MO request terms - id: https://api.github.com/repos/obi-ontology/obi/issues/569 label: material supplier role - id: https://api.github.com/repos/obi-ontology/obi/issues/57 label: ArrayExpress use case - id: https://api.github.com/repos/obi-ontology/obi/issues/570 label: RNA sequencing - id: https://api.github.com/repos/obi-ontology/obi/issues/571 label: has_function - id: https://api.github.com/repos/obi-ontology/obi/issues/572 label: infectious agent belongs to IDO - id: https://api.github.com/repos/obi-ontology/obi/issues/573 label: Primer - id: https://api.github.com/repos/obi-ontology/obi/issues/574 label: 'request: material synthesize and amplification objective' - id: https://api.github.com/repos/obi-ontology/obi/issues/575 label: add GO Terms to OBI - id: https://api.github.com/repos/obi-ontology/obi/issues/576 label: New Assays from EFO - id: https://api.github.com/repos/obi-ontology/obi/issues/577 label: issues need to be fixed for release - id: https://api.github.com/repos/obi-ontology/obi/issues/578 label: Terms with uncuated status - id: https://api.github.com/repos/obi-ontology/obi/issues/579 label: import unit ontology terms for IEDB - id: https://api.github.com/repos/obi-ontology/obi/issues/58 label: BII use case - id: https://api.github.com/repos/obi-ontology/obi/issues/580 label: import Go terms for IEDB - id: https://api.github.com/repos/obi-ontology/obi/issues/581 label: xls spreadsheet - id: https://api.github.com/repos/obi-ontology/obi/issues/582 label: Including terms from the NCI thesaurus - id: https://api.github.com/repos/obi-ontology/obi/issues/583 label: import GO terms for IEDB - id: https://api.github.com/repos/obi-ontology/obi/issues/584 label: import more GO terms - id: https://api.github.com/repos/obi-ontology/obi/issues/585 label: edit GO parent - id: https://api.github.com/repos/obi-ontology/obi/issues/586 label: refer to an obsolete term - id: https://api.github.com/repos/obi-ontology/obi/issues/587 label: objective achieved by - id: https://api.github.com/repos/obi-ontology/obi/issues/588 label: dose specification and dose - id: https://api.github.com/repos/obi-ontology/obi/issues/589 label: Definition of sample and related classes - id: https://api.github.com/repos/obi-ontology/obi/issues/59 label: BIRN use case - id: https://api.github.com/repos/obi-ontology/obi/issues/590 label: Specimen creation output - id: https://api.github.com/repos/obi-ontology/obi/issues/591 label: Specimen labeling - id: https://api.github.com/repos/obi-ontology/obi/issues/592 label: refining output of group assignment process - id: https://api.github.com/repos/obi-ontology/obi/issues/593 label: creation subtypes of population or groups - id: https://api.github.com/repos/obi-ontology/obi/issues/594 label: stress or injury design & intervention design - id: https://api.github.com/repos/obi-ontology/obi/issues/595 label: material separation and purification need disambiguation - id: https://api.github.com/repos/obi-ontology/obi/issues/596 label: injections terms appears to have two mother classes - id: https://api.github.com/repos/obi-ontology/obi/issues/597 label: import GO term for IEDB - id: https://api.github.com/repos/obi-ontology/obi/issues/598 label: Clarification of 'immortalized cell line culture' class - id: https://api.github.com/repos/obi-ontology/obi/issues/599 label: perforin production Go import - id: https://api.github.com/repos/obi-ontology/obi/issues/6 label: analyte - id: https://api.github.com/repos/obi-ontology/obi/issues/60 label: SIFT use case - id: https://api.github.com/repos/obi-ontology/obi/issues/600 label: 'term request: miniumum inhibitory concentration' - id: https://api.github.com/repos/obi-ontology/obi/issues/601 label: Some easy to be fixed issues - id: https://api.github.com/repos/obi-ontology/obi/issues/602 label: merged PATO terms - id: https://api.github.com/repos/obi-ontology/obi/issues/603 label: BRC needed terms - id: https://api.github.com/repos/obi-ontology/obi/issues/604 label: research project grant - id: https://api.github.com/repos/obi-ontology/obi/issues/605 label: import GO_0009566 - id: https://api.github.com/repos/obi-ontology/obi/issues/606 label: import GO_0006909 - id: https://api.github.com/repos/obi-ontology/obi/issues/607 label: import GO_0008228 - id: https://api.github.com/repos/obi-ontology/obi/issues/608 label: import GO_0002524 - id: https://api.github.com/repos/obi-ontology/obi/issues/609 label: import GO_0001788 - id: https://api.github.com/repos/obi-ontology/obi/issues/61 label: GenePattern use case - id: https://api.github.com/repos/obi-ontology/obi/issues/610 label: import GO_0016064 - id: https://api.github.com/repos/obi-ontology/obi/issues/611 label: import GO_0097278 - id: https://api.github.com/repos/obi-ontology/obi/issues/612 label: import GO_0097282 - id: https://api.github.com/repos/obi-ontology/obi/issues/613 label: import GO_0097281 - id: https://api.github.com/repos/obi-ontology/obi/issues/614 label: contact representative role - id: https://api.github.com/repos/obi-ontology/obi/issues/615 label: has_member_of_organization and is_assigned_by relations - id: https://api.github.com/repos/obi-ontology/obi/issues/616 label: definition of 'sequencing assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/617 label: occurrence of disease not always immune based - id: https://api.github.com/repos/obi-ontology/obi/issues/618 label: UO terms - id: https://api.github.com/repos/obi-ontology/obi/issues/619 label: 'bulk plant molecular biology term submission ' - id: https://api.github.com/repos/obi-ontology/obi/issues/62 label: long term plan for OBI grant - id: https://api.github.com/repos/obi-ontology/obi/issues/620 label: Deprecate 'material sample role' and related terms - id: https://api.github.com/repos/obi-ontology/obi/issues/621 label: change textual definition of "is_member_of organization" - id: https://api.github.com/repos/obi-ontology/obi/issues/622 label: definition of 'antigen role' - id: https://api.github.com/repos/obi-ontology/obi/issues/623 label: interpreting data, performing diagnosis and related terms - id: https://api.github.com/repos/obi-ontology/obi/issues/624 label: '''transcription profiling assay'' and ''RNA protection assay''' - id: https://api.github.com/repos/obi-ontology/obi/issues/625 label: 'subclasses of ''chromatography device/instrument'' ' - id: https://api.github.com/repos/obi-ontology/obi/issues/626 label: subclasses of 'class discovery data transformation' - id: https://api.github.com/repos/obi-ontology/obi/issues/627 label: 'organize ''variable specification'' ' - id: https://api.github.com/repos/obi-ontology/obi/issues/628 label: Clarifications needed for several 'cell' and 'cell culture' - id: https://api.github.com/repos/obi-ontology/obi/issues/629 label: image acquisition hierarchy - id: https://api.github.com/repos/obi-ontology/obi/issues/63 label: Immunity use case - id: https://api.github.com/repos/obi-ontology/obi/issues/630 label: Review children of 'participant under investigation role' - id: https://api.github.com/repos/obi-ontology/obi/issues/631 label: Review 'group assignment' modelling - id: https://api.github.com/repos/obi-ontology/obi/issues/632 label: Import 'population' from elsewhere - id: https://api.github.com/repos/obi-ontology/obi/issues/633 label: Modelling "possession" or "contol" over resources - id: https://api.github.com/repos/obi-ontology/obi/issues/634 label: 'Misleading label for OBI_0302867 ' - id: https://api.github.com/repos/obi-ontology/obi/issues/635 label: overly restrictive definition of 'eligibility rule' - id: https://api.github.com/repos/obi-ontology/obi/issues/636 label: '"executes" as short cut relation' - id: https://api.github.com/repos/obi-ontology/obi/issues/637 label: 'Link in Tracker to submission Documentation is dead ' - id: https://api.github.com/repos/obi-ontology/obi/issues/638 label: completing and implimenting the term 'genetic material' - id: https://api.github.com/repos/obi-ontology/obi/issues/639 label: ISA alternative term - id: https://api.github.com/repos/obi-ontology/obi/issues/64 label: probe - id: https://api.github.com/repos/obi-ontology/obi/issues/640 label: new term 'metabolic inactivation' - id: https://api.github.com/repos/obi-ontology/obi/issues/641 label: pathogen role - id: https://api.github.com/repos/obi-ontology/obi/issues/642 label: '''bisulfite sequencing'' should have more specific subclass' - id: https://api.github.com/repos/obi-ontology/obi/issues/643 label: '''MeDIP-SEQ assay'' should have more specific subclass' - id: https://api.github.com/repos/obi-ontology/obi/issues/644 label: update definition of sonicator - id: https://api.github.com/repos/obi-ontology/obi/issues/645 label: 'Contradictory use of ''has specific output of'' and ''is speci ' - id: https://api.github.com/repos/obi-ontology/obi/issues/646 label: Terms request by Bioinformatics Resource Center (BRC) - id: https://api.github.com/repos/obi-ontology/obi/issues/647 label: assay terms request by ENCODE project - id: https://api.github.com/repos/obi-ontology/obi/issues/648 label: add relationship for RNA-seq assay to RNA-sequencing - id: https://api.github.com/repos/obi-ontology/obi/issues/649 label: target of material addition role for fillings and crowns - id: https://api.github.com/repos/obi-ontology/obi/issues/65 label: specifies role - id: https://api.github.com/repos/obi-ontology/obi/issues/650 label: Add new objective for DNA replication - id: https://api.github.com/repos/obi-ontology/obi/issues/651 label: need term for removal of material - id: https://api.github.com/repos/obi-ontology/obi/issues/652 label: Wrong logical axiom of histology - id: https://api.github.com/repos/obi-ontology/obi/issues/653 label: term for flow cytometry antigen panel? - id: https://api.github.com/repos/obi-ontology/obi/issues/654 label: Shouldn't there be a term for "compound"? - id: https://api.github.com/repos/obi-ontology/obi/issues/655 label: clinical investigation - id: https://api.github.com/repos/obi-ontology/obi/issues/656 label: Cell line immortalization not classifying properly - id: https://api.github.com/repos/obi-ontology/obi/issues/657 label: investigator - id: https://api.github.com/repos/obi-ontology/obi/issues/658 label: make 'digital curation' sibbling of 'documenting' - id: https://api.github.com/repos/obi-ontology/obi/issues/659 label: make 'data encoding' sibling of 'documenting' - id: https://api.github.com/repos/obi-ontology/obi/issues/66 label: BIRN microscopy and imaging OWL file - id: https://api.github.com/repos/obi-ontology/obi/issues/660 label: human subject enrollment - id: https://api.github.com/repos/obi-ontology/obi/issues/661 label: bearer of analyte role - id: https://api.github.com/repos/obi-ontology/obi/issues/662 label: Variable - id: https://api.github.com/repos/obi-ontology/obi/issues/663 label: specimen role - id: https://api.github.com/repos/obi-ontology/obi/issues/664 label: selection rule -> selection criterion - id: https://api.github.com/repos/obi-ontology/obi/issues/665 label: comparative genomic hybridization by array and copy number variation profiling - id: https://api.github.com/repos/obi-ontology/obi/issues/666 label: 'IRI of ''detection of molecular label'' ' - id: https://api.github.com/repos/obi-ontology/obi/issues/667 label: consistent representation of assay - id: https://api.github.com/repos/obi-ontology/obi/issues/668 label: new terms requested by Bioinformatics Resource Center (BRC) - id: https://api.github.com/repos/obi-ontology/obi/issues/669 label: device terms requested by ENCODE project - id: https://api.github.com/repos/obi-ontology/obi/issues/67 label: assignment class - id: https://api.github.com/repos/obi-ontology/obi/issues/670 label: LSRFortessa - id: https://api.github.com/repos/obi-ontology/obi/issues/671 label: sequence assembly (as data, not as process ) - id: https://api.github.com/repos/obi-ontology/obi/issues/672 label: performed_by/performs and performed_on relation - id: https://api.github.com/repos/obi-ontology/obi/issues/673 label: 'Replace some OBI terms by IDO terms ' - id: https://api.github.com/repos/obi-ontology/obi/issues/674 label: terms request by NIAID GSC BRC - id: https://api.github.com/repos/obi-ontology/obi/issues/675 label: request term to indicate data arises from "simulation" vs "observation" - id: https://api.github.com/repos/obi-ontology/obi/issues/676 label: request of freezing related terms - id: https://api.github.com/repos/obi-ontology/obi/issues/677 label: normal value specification and notion of interval of valid values - id: https://api.github.com/repos/obi-ontology/obi/issues/678 label: is_orthogonal_to relation - id: https://api.github.com/repos/obi-ontology/obi/issues/679 label: OBI_0001853 - id: https://api.github.com/repos/obi-ontology/obi/issues/68 label: Definition of PA - id: https://api.github.com/repos/obi-ontology/obi/issues/680 label: Add synonym to OBI_0001923 - id: https://api.github.com/repos/obi-ontology/obi/issues/681 label: Synonym for OBI:0001463 - id: https://api.github.com/repos/obi-ontology/obi/issues/682 label: 'new term request for chromatin immunoprecipitation ' - id: https://api.github.com/repos/obi-ontology/obi/issues/683 label: use device and use reagent relations - id: https://api.github.com/repos/obi-ontology/obi/issues/684 label: Clean Up trunk/src/ontology/branches - id: https://api.github.com/repos/obi-ontology/obi/issues/685 label: Update Build Instructions on Wiki - id: https://api.github.com/repos/obi-ontology/obi/issues/686 label: assay terms requested by ImmPort - id: https://api.github.com/repos/obi-ontology/obi/issues/687 label: repeated measure design should not be a subtype of intervention design - id: https://api.github.com/repos/obi-ontology/obi/issues/688 label: molecular crosslinker is_a light emission device - id: https://api.github.com/repos/obi-ontology/obi/issues/689 label: selection - id: https://api.github.com/repos/obi-ontology/obi/issues/69 label: In vivo, ex vivo - id: https://api.github.com/repos/obi-ontology/obi/issues/690 label: acquisition - id: https://api.github.com/repos/obi-ontology/obi/issues/691 label: targeted gene survey/environmental gene survey terms submission - id: https://api.github.com/repos/obi-ontology/obi/issues/692 label: Concretizes Relations - id: https://api.github.com/repos/obi-ontology/obi/issues/693 label: dc:description on OBI should be rdfs:comment - id: https://api.github.com/repos/obi-ontology/obi/issues/694 label: competitive binding reference ligand role - id: https://api.github.com/repos/obi-ontology/obi/issues/695 label: beta-galactosidase assay - id: https://api.github.com/repos/obi-ontology/obi/issues/696 label: http://obi-ontology.org/page/Plan is out of date - id: https://api.github.com/repos/obi-ontology/obi/issues/697 label: problem with region and subs imported from SO - id: https://api.github.com/repos/obi-ontology/obi/issues/698 label: decision analysis study design - id: https://api.github.com/repos/obi-ontology/obi/issues/699 label: systematic review study design - id: https://api.github.com/repos/obi-ontology/obi/issues/7 label: reporter and detector - id: https://api.github.com/repos/obi-ontology/obi/issues/70 label: Docs on Role and Function - id: https://api.github.com/repos/obi-ontology/obi/issues/700 label: new label for obi:specimen collection - id: https://api.github.com/repos/obi-ontology/obi/issues/701 label: ' sensor chip ' - id: https://api.github.com/repos/obi-ontology/obi/issues/702 label: '"preparative chromatography" needs work' - id: https://api.github.com/repos/obi-ontology/obi/issues/703 label: change to existing terms - id: https://api.github.com/repos/obi-ontology/obi/issues/704 label: NTRs - id: https://api.github.com/repos/obi-ontology/obi/issues/705 label: assay term request - id: https://api.github.com/repos/obi-ontology/obi/issues/706 label: '"bead" is too general a label' - id: https://api.github.com/repos/obi-ontology/obi/issues/707 label: NTRs - id: https://api.github.com/repos/obi-ontology/obi/issues/708 label: blood harvesting is_a collecting specimen from organism? - id: https://api.github.com/repos/obi-ontology/obi/issues/709 label: few more NTRs - id: https://api.github.com/repos/obi-ontology/obi/issues/71 label: software - id: https://api.github.com/repos/obi-ontology/obi/issues/710 label: ENCODE Assay NTRs - id: https://api.github.com/repos/obi-ontology/obi/issues/711 label: Add Synonyms OBI_0001863 - id: https://api.github.com/repos/obi-ontology/obi/issues/712 label: Change name for OBI_0000693 - id: https://api.github.com/repos/obi-ontology/obi/issues/713 label: ENCODE Device NTRs - id: https://api.github.com/repos/obi-ontology/obi/issues/714 label: 'New term: enzyme-linked antibody' - id: https://api.github.com/repos/obi-ontology/obi/issues/715 label: Unnecessary annotations in release files - id: https://api.github.com/repos/obi-ontology/obi/issues/716 label: Import OGMS:disease - id: https://api.github.com/repos/obi-ontology/obi/issues/717 label: 'Change the output of assay: from ''information content entity'' to ''data item''' - id: https://api.github.com/repos/obi-ontology/obi/issues/718 label: methylation-specific polymerase chain reaction unsatisfiable when continuant disjoint from occurrent is added as an axiom - id: https://api.github.com/repos/obi-ontology/obi/issues/719 label: Intention of OBI_0000630 "hematology" term - id: https://api.github.com/repos/obi-ontology/obi/issues/72 label: statistical tests & algorithms - id: https://api.github.com/repos/obi-ontology/obi/issues/720 label: 'New term request: Quantitative trait locus mapping + Expression QTL mapping' - id: https://api.github.com/repos/obi-ontology/obi/issues/721 label: pH datum - id: https://api.github.com/repos/obi-ontology/obi/issues/722 label: Edit definition of OBI_0600007 - id: https://api.github.com/repos/obi-ontology/obi/issues/723 label: Should pool of specimens use "sample" in its definition? - id: https://api.github.com/repos/obi-ontology/obi/issues/724 label: 'Use ''extended organism'' vs organism in some definitions ' - id: https://api.github.com/repos/obi-ontology/obi/issues/725 label: Definition of Tissue specimen "or body location (arm)" - id: https://api.github.com/repos/obi-ontology/obi/issues/726 label: Some specimens should be subclass of Tissue specimen but aren't - id: https://api.github.com/repos/obi-ontology/obi/issues/727 label: Spelling error in OBI:0001239 - id: https://api.github.com/repos/obi-ontology/obi/issues/728 label: Recurring problems with Unicode characters - id: https://api.github.com/repos/obi-ontology/obi/issues/729 label: inconsistent classes - id: https://api.github.com/repos/obi-ontology/obi/issues/73 label: update wiki - id: https://api.github.com/repos/obi-ontology/obi/issues/730 label: coordinate assays and observing processes with BCO - id: https://api.github.com/repos/obi-ontology/obi/issues/731 label: Waters? - id: https://api.github.com/repos/obi-ontology/obi/issues/732 label: New Term Request - Illumina HiSeq X Five - id: https://api.github.com/repos/obi-ontology/obi/issues/733 label: New Term Request - Illumina MiSeq Dx - id: https://api.github.com/repos/obi-ontology/obi/issues/734 label: New Term Request - Illumina MiSeq FGx - id: https://api.github.com/repos/obi-ontology/obi/issues/735 label: New Term Request - Illumina NextSeq 500 - id: https://api.github.com/repos/obi-ontology/obi/issues/736 label: New Term Request - NGS technology - id: https://api.github.com/repos/obi-ontology/obi/issues/737 label: New Term Request - Ion Torrent Ion PGM - id: https://api.github.com/repos/obi-ontology/obi/issues/738 label: New Term Request - Ion Torrent Chef - id: https://api.github.com/repos/obi-ontology/obi/issues/739 label: New Term Request - Ion Torrent Ion Proton - id: https://api.github.com/repos/obi-ontology/obi/issues/74 label: cross database integration use case - id: https://api.github.com/repos/obi-ontology/obi/issues/740 label: Add Synonyms OBI_0001463 - id: https://api.github.com/repos/obi-ontology/obi/issues/741 label: New Term Request - Illumina HiSeq 3000 - id: https://api.github.com/repos/obi-ontology/obi/issues/742 label: New Term Request - Illumina HiSeq 4000 - id: https://api.github.com/repos/obi-ontology/obi/issues/743 label: New Term Request - Roche 454 GS FLX+ - id: https://api.github.com/repos/obi-ontology/obi/issues/744 label: New Term Request - Roche 454 GS Junior+ - id: https://api.github.com/repos/obi-ontology/obi/issues/745 label: 'New term request: evidence role' - id: https://api.github.com/repos/obi-ontology/obi/issues/746 label: immunohistochemistry assay - new term - id: https://api.github.com/repos/obi-ontology/obi/issues/747 label: '"Flow cell" might be ambiguous' - id: https://api.github.com/repos/obi-ontology/obi/issues/748 label: Relating processed specimens to their source - id: https://api.github.com/repos/obi-ontology/obi/issues/749 label: New Term- Ion 314 Chip v2 - id: https://api.github.com/repos/obi-ontology/obi/issues/75 label: Time - id: https://api.github.com/repos/obi-ontology/obi/issues/750 label: term:transcription factor binding site identification - id: https://api.github.com/repos/obi-ontology/obi/issues/751 label: chromatin immunoprecipitation - id: https://api.github.com/repos/obi-ontology/obi/issues/752 label: MHC ligand assay - id: https://api.github.com/repos/obi-ontology/obi/issues/753 label: MHC qualitative binding to ligand assay - id: https://api.github.com/repos/obi-ontology/obi/issues/754 label: T cell epitope dependent biological activity assay - id: https://api.github.com/repos/obi-ontology/obi/issues/755 label: Datatype property restriction to float is causing loss of significant digits on lat/lon measurements - id: https://api.github.com/repos/obi-ontology/obi/issues/756 label: Adding a term for MCC-Seq - id: https://api.github.com/repos/obi-ontology/obi/issues/757 label: New Term- Ion 316 Chip v2 - id: https://api.github.com/repos/obi-ontology/obi/issues/758 label: New Term- Ion 318 Chip v2 - id: https://api.github.com/repos/obi-ontology/obi/issues/759 label: New Term- Ion Semiconductor Chip - id: https://api.github.com/repos/obi-ontology/obi/issues/76 label: Parameter instances to PATO - id: https://api.github.com/repos/obi-ontology/obi/issues/760 label: modeling data item - id: https://api.github.com/repos/obi-ontology/obi/issues/761 label: new terms request for Biobank data annotation - id: https://api.github.com/repos/obi-ontology/obi/issues/762 label: link an OBI term to an ENVO term - id: https://api.github.com/repos/obi-ontology/obi/issues/763 label: New terms requested for FaceBase - id: https://api.github.com/repos/obi-ontology/obi/issues/764 label: 'New term request: enhancer reporter gene assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/765 label: 'New term request: Chromatin modifier-associated region identification by ChIP-Seq assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/766 label: 'New term request: Transcript expression location detection by Hybridization Chain Reaction' - id: https://api.github.com/repos/obi-ontology/obi/issues/767 label: 'New term request: Cell culture ID' - id: https://api.github.com/repos/obi-ontology/obi/issues/768 label: 'New term request: Cell Reprogramming' - id: https://api.github.com/repos/obi-ontology/obi/issues/769 label: 'New term request: Reprogramming reagents' - id: https://api.github.com/repos/obi-ontology/obi/issues/77 label: Protocol Application Example from ArrayExpress - id: https://api.github.com/repos/obi-ontology/obi/issues/770 label: relabel OBI:infection - id: https://api.github.com/repos/obi-ontology/obi/issues/771 label: OBI_0001683 to relabel and add a general FISH class - id: https://api.github.com/repos/obi-ontology/obi/issues/772 label: New Term Request - TAB-seq - id: https://api.github.com/repos/obi-ontology/obi/issues/773 label: New Term Request - RACE - id: https://api.github.com/repos/obi-ontology/obi/issues/774 label: 'New Term Request - Human 6x630K CGH Whole Genome Tiling Array ' - id: https://api.github.com/repos/obi-ontology/obi/issues/775 label: specimen container for biobanks - or for more general use? - id: https://api.github.com/repos/obi-ontology/obi/issues/776 label: OBIB term request for 'physical store' - id: https://api.github.com/repos/obi-ontology/obi/issues/777 label: 'New Term Requests: assays' - id: https://api.github.com/repos/obi-ontology/obi/issues/778 label: loosen analyte role to allow cells, virii? - id: https://api.github.com/repos/obi-ontology/obi/issues/779 label: '''study design'' and ''execution of study design''' - id: https://api.github.com/repos/obi-ontology/obi/issues/78 label: BirnLex SW ontology - id: https://api.github.com/repos/obi-ontology/obi/issues/780 label: 'clarifications sought for: genetic modification' - id: https://api.github.com/repos/obi-ontology/obi/issues/781 label: 'Term request: whole organ specimen' - id: https://api.github.com/repos/obi-ontology/obi/issues/782 label: New term request - eCLIP - id: https://api.github.com/repos/obi-ontology/obi/issues/783 label: New Terminologies for OBI (Yale Med School) - id: https://api.github.com/repos/obi-ontology/obi/issues/784 label: 'issue of OBI_1110095: ''blood harvesting''' - id: https://api.github.com/repos/obi-ontology/obi/issues/785 label: improve definition of "Non negative matrix factorization" - id: https://api.github.com/repos/obi-ontology/obi/issues/786 label: Use of 'gross anatomical part' to define 'tissue specimen' - id: https://api.github.com/repos/obi-ontology/obi/issues/787 label: More intuitive label for 'tissue specimen' - id: https://api.github.com/repos/obi-ontology/obi/issues/788 label: move 'organization' under 'object aggregate' - id: https://api.github.com/repos/obi-ontology/obi/issues/789 label: Replace CARO terms with UBERON terms in OBI - id: https://api.github.com/repos/obi-ontology/obi/issues/79 label: J Westbrook's hierarchy - id: https://api.github.com/repos/obi-ontology/obi/issues/790 label: Add 'geometric mean calculation' - id: https://api.github.com/repos/obi-ontology/obi/issues/791 label: assay harmonization - inputs of assay - id: https://api.github.com/repos/obi-ontology/obi/issues/792 label: assay harmonization - device - id: https://api.github.com/repos/obi-ontology/obi/issues/793 label: assay harmonization - outputs of assay - id: https://api.github.com/repos/obi-ontology/obi/issues/794 label: assay harmonization - objective - id: https://api.github.com/repos/obi-ontology/obi/issues/795 label: assay harmonization - processes in assays - id: https://api.github.com/repos/obi-ontology/obi/issues/796 label: NTR - Bru-seq & BruChase-seq - id: https://api.github.com/repos/obi-ontology/obi/issues/797 label: NTR - small RNA-seq - id: https://api.github.com/repos/obi-ontology/obi/issues/798 label: 'Specified input issue for chromosome organization assay by FISH ' - id: https://api.github.com/repos/obi-ontology/obi/issues/799 label: Analytes and outputs of multi-part assays - id: https://api.github.com/repos/obi-ontology/obi/issues/8 label: Variables indicated by relations or as entities - id: https://api.github.com/repos/obi-ontology/obi/issues/80 label: Cartik annotations - id: https://api.github.com/repos/obi-ontology/obi/issues/800 label: regarding value specifications - id: https://api.github.com/repos/obi-ontology/obi/issues/801 label: 'Class request: digital object identifier' - id: https://api.github.com/repos/obi-ontology/obi/issues/802 label: reagrading PubMed ID - id: https://api.github.com/repos/obi-ontology/obi/issues/803 label: 'NTR: terms related to RNA seq data analysis' - id: https://api.github.com/repos/obi-ontology/obi/issues/804 label: remove hyphen from in-situ hybridization - id: https://api.github.com/repos/obi-ontology/obi/issues/805 label: prostate gland imported as both class and instance - id: https://api.github.com/repos/obi-ontology/obi/issues/806 label: NTRs (requested by project ENCODE) - id: https://api.github.com/repos/obi-ontology/obi/issues/807 label: 'New Term Request: Pulse SILAC' - id: https://api.github.com/repos/obi-ontology/obi/issues/808 label: Classify enzymes - id: https://api.github.com/repos/obi-ontology/obi/issues/809 label: 'NTR: stained fixed slide specimens' - id: https://api.github.com/repos/obi-ontology/obi/issues/81 label: Measurement Proposal - id: https://api.github.com/repos/obi-ontology/obi/issues/810 label: empty/null value for a property in OBI - id: https://api.github.com/repos/obi-ontology/obi/issues/811 label: handle single cell specimen - id: https://api.github.com/repos/obi-ontology/obi/issues/812 label: add new class to represent clinical assessments (handedness, tumor grading) - id: https://api.github.com/repos/obi-ontology/obi/issues/813 label: NTRs for ECO-OBI collaboration - id: https://api.github.com/repos/obi-ontology/obi/issues/814 label: remove extra 'textual definition' label - id: https://api.github.com/repos/obi-ontology/obi/issues/815 label: Check reasoning speed and compare - id: https://api.github.com/repos/obi-ontology/obi/issues/816 label: Add two new epitope assays - id: https://api.github.com/repos/obi-ontology/obi/issues/817 label: cloud condensation nucleus counter - id: https://api.github.com/repos/obi-ontology/obi/issues/818 label: 'Extensions for Value Specifications ' - id: https://api.github.com/repos/obi-ontology/obi/issues/819 label: Generalize range of 'has specified value' - id: https://api.github.com/repos/obi-ontology/obi/issues/82 label: Feature class and has_feature relation - id: https://api.github.com/repos/obi-ontology/obi/issues/820 label: NTR:mobility size spectrometer - id: https://api.github.com/repos/obi-ontology/obi/issues/821 label: please add class "case series study design" - id: https://api.github.com/repos/obi-ontology/obi/issues/822 label: 'NTR: database extract, transform, and load process' - id: https://api.github.com/repos/obi-ontology/obi/issues/823 label: 'NTR: degree Fahrenheit import' - id: https://api.github.com/repos/obi-ontology/obi/issues/824 label: 'NTR: RNA integrity number' - id: https://api.github.com/repos/obi-ontology/obi/issues/825 label: 'NTR: Detection of antigen specific antibodies assays and related serologic tests' - id: https://api.github.com/repos/obi-ontology/obi/issues/826 label: Three PATO obsolete terms need to be replaced - id: https://api.github.com/repos/obi-ontology/obi/issues/827 label: 'NTR: BruUV-seq' - id: https://api.github.com/repos/obi-ontology/obi/issues/828 label: 'NTR: Genotyping by HiC' - id: https://api.github.com/repos/obi-ontology/obi/issues/829 label: 'NTR: Mint-ChIP' - id: https://api.github.com/repos/obi-ontology/obi/issues/83 label: reference protocol - id: https://api.github.com/repos/obi-ontology/obi/issues/830 label: 'NTR: Circulome-seq' - id: https://api.github.com/repos/obi-ontology/obi/issues/831 label: 'NTR: nCounter Mouse miRNA Expression arrays' - id: https://api.github.com/repos/obi-ontology/obi/issues/832 label: 'NTR: Illumina Genome Analyzer (general/parent term)' - id: https://api.github.com/repos/obi-ontology/obi/issues/833 label: What is the difference between a value specification and a measurement datum ? - id: https://api.github.com/repos/obi-ontology/obi/issues/834 label: 'NTR: quality measurement assays and associated value specifications' - id: https://api.github.com/repos/obi-ontology/obi/issues/835 label: 'NTR: more specimen from organism terms needed for OBIB/NCI BBRB' - id: https://api.github.com/repos/obi-ontology/obi/issues/836 label: Definition of 'training objective' has a grammatical error and incorrect genus - id: https://api.github.com/repos/obi-ontology/obi/issues/837 label: '''inclusion criteria'' is plural' - id: https://api.github.com/repos/obi-ontology/obi/issues/838 label: check logical definition of investigation agent role - id: https://api.github.com/repos/obi-ontology/obi/issues/839 label: 'Term request: Age group inclusion criterion' - id: https://api.github.com/repos/obi-ontology/obi/issues/84 label: Experimental factor - id: https://api.github.com/repos/obi-ontology/obi/issues/840 label: 'Term request: Use of medication inclusion criterion' - id: https://api.github.com/repos/obi-ontology/obi/issues/841 label: 'Term request: Hospital patient inclusion criterion' - id: https://api.github.com/repos/obi-ontology/obi/issues/842 label: 'Term request: family status inclusion criterion' - id: https://api.github.com/repos/obi-ontology/obi/issues/843 label: 'Term request: Sex inclusion criterion' - id: https://api.github.com/repos/obi-ontology/obi/issues/844 label: 'Term request: Country of residence inclusion criterion' - id: https://api.github.com/repos/obi-ontology/obi/issues/845 label: 'Term request: Ethnicity inclusion criterion' - id: https://api.github.com/repos/obi-ontology/obi/issues/846 label: intracellular + extracellular electrophysiological recording terms - id: https://api.github.com/repos/obi-ontology/obi/issues/847 label: 'NTR: oligo-dT primed Total RNA' - id: https://api.github.com/repos/obi-ontology/obi/issues/848 label: 'NTR: cDNA Sequencing Assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/849 label: 'NTR: PacBio Sequel Sequencing Platform' - id: https://api.github.com/repos/obi-ontology/obi/issues/85 label: protocol application role - id: https://api.github.com/repos/obi-ontology/obi/issues/850 label: 'NTR: 10X Chromium Library Construction Platform' - id: https://api.github.com/repos/obi-ontology/obi/issues/851 label: 'NTR: C1 Fluidigm Library Construction Platform' - id: https://api.github.com/repos/obi-ontology/obi/issues/852 label: 'NTR: icSHAPE Assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/853 label: histology and Histopathology - id: https://api.github.com/repos/obi-ontology/obi/issues/854 label: Distinguish definitions for "proteomic profiling design" and "proteomic profiling by array design" - id: https://api.github.com/repos/obi-ontology/obi/issues/855 label: 'NTR: specimen processing and transport terms needed for OBIB/NCI BBRB' - id: https://api.github.com/repos/obi-ontology/obi/issues/856 label: 'NTR: AJCC tumor grade value specification' - id: https://api.github.com/repos/obi-ontology/obi/issues/857 label: Update OBI build system - id: https://api.github.com/repos/obi-ontology/obi/issues/858 label: What to do with OBI:00001975? - id: https://api.github.com/repos/obi-ontology/obi/issues/859 label: Update OBI:0002112 - id: https://api.github.com/repos/obi-ontology/obi/issues/86 label: Reference value - id: https://api.github.com/repos/obi-ontology/obi/issues/860 label: Add first batch of assays from ECO - id: https://api.github.com/repos/obi-ontology/obi/issues/861 label: Add new release candidate 2017-09-03 - id: https://api.github.com/repos/obi-ontology/obi/issues/862 label: ordinal value specification - id: https://api.github.com/repos/obi-ontology/obi/issues/863 label: polyA+ & polyA- RNA-seq distinctions - id: https://api.github.com/repos/obi-ontology/obi/issues/864 label: 'NTRs: ATAC-seq assays' - id: https://api.github.com/repos/obi-ontology/obi/issues/865 label: Eligibility criteria for consideration into OBI - id: https://api.github.com/repos/obi-ontology/obi/issues/866 label: 'NTR: medical history related terms' - id: https://api.github.com/repos/obi-ontology/obi/issues/867 label: 'NTR: molecular analysis facility' - id: https://api.github.com/repos/obi-ontology/obi/issues/868 label: Value Specification as datatype - id: https://api.github.com/repos/obi-ontology/obi/issues/869 label: 'Add validation rule: synonyms should not duplicate primary label' - id: https://api.github.com/repos/obi-ontology/obi/issues/87 label: TheRest.owl - id: https://api.github.com/repos/obi-ontology/obi/issues/870 label: Measurement Datum vs. Value Specification - id: https://api.github.com/repos/obi-ontology/obi/issues/871 label: 'NTR: New terms for the Ontology for RNA Sequencing (ORNASEQ)' - id: https://api.github.com/repos/obi-ontology/obi/issues/872 label: circulome-seq term - id: https://api.github.com/repos/obi-ontology/obi/issues/873 label: Improve logic for DNA sequencing service - id: https://api.github.com/repos/obi-ontology/obi/issues/874 label: 'NTR: direct RNA sequencing assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/875 label: 'NTR: Chromosome conformation capture-on-chip' - id: https://api.github.com/repos/obi-ontology/obi/issues/876 label: 'NTR: Precision nuclear run-on and sequencing assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/877 label: 'NTR: Clone-seq' - id: https://api.github.com/repos/obi-ontology/obi/issues/878 label: 'NTR: isoform sequencing' - id: https://api.github.com/repos/obi-ontology/obi/issues/879 label: 'Adding Subtypes for ' - id: https://api.github.com/repos/obi-ontology/obi/issues/88 label: radioactive and dispositions - id: https://api.github.com/repos/obi-ontology/obi/issues/880 label: 'term request: health status inclusion criterion' - id: https://api.github.com/repos/obi-ontology/obi/issues/881 label: 'term request: clinically relevant life style inclusion criterion' - id: https://api.github.com/repos/obi-ontology/obi/issues/882 label: 'performing a clinical assessment ' - id: https://api.github.com/repos/obi-ontology/obi/issues/883 label: '''derives from'' in definitions of specimens' - id: https://api.github.com/repos/obi-ontology/obi/issues/884 label: Add 4 new terms for ECO - id: https://api.github.com/repos/obi-ontology/obi/issues/885 label: Adjust definition of 'hydroxyl-radical footprinting assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/886 label: Add two assays, update a couple more - id: https://api.github.com/repos/obi-ontology/obi/issues/887 label: 'Term request: clinically relevant exposure inclusion criterion' - id: https://api.github.com/repos/obi-ontology/obi/issues/888 label: 'term request: gravidity inclusion criterion' - id: https://api.github.com/repos/obi-ontology/obi/issues/889 label: hasDateTime - id: https://api.github.com/repos/obi-ontology/obi/issues/89 label: gating - id: https://api.github.com/repos/obi-ontology/obi/issues/890 label: Roles as substitutes for object/datatype properties - id: https://api.github.com/repos/obi-ontology/obi/issues/891 label: Where is the obo file - id: https://api.github.com/repos/obi-ontology/obi/issues/892 label: Fix missing link to git website - id: https://api.github.com/repos/obi-ontology/obi/issues/893 label: Fix indented code blocks - id: https://api.github.com/repos/obi-ontology/obi/issues/894 label: Fix one more indented code block - id: https://api.github.com/repos/obi-ontology/obi/issues/895 label: 'Fix title: add ''s''' - id: https://api.github.com/repos/obi-ontology/obi/issues/896 label: 'NTR: case eligibility criterion' - id: https://api.github.com/repos/obi-ontology/obi/issues/897 label: 'NTR: stool specimen collection process' - id: https://api.github.com/repos/obi-ontology/obi/issues/898 label: 'NTR: has start time' - id: https://api.github.com/repos/obi-ontology/obi/issues/899 label: 'NTR: has end time' - id: https://api.github.com/repos/obi-ontology/obi/issues/9 label: Should any assay term names include the string "analysis" - id: https://api.github.com/repos/obi-ontology/obi/issues/90 label: Visualization Terms - id: https://api.github.com/repos/obi-ontology/obi/issues/900 label: 'NTR: water container' - id: https://api.github.com/repos/obi-ontology/obi/issues/901 label: 'NTR: pouring' - id: https://api.github.com/repos/obi-ontology/obi/issues/902 label: 'NTR: scooping' - id: https://api.github.com/repos/obi-ontology/obi/issues/903 label: 'NTR: water treatment' - id: https://api.github.com/repos/obi-ontology/obi/issues/904 label: 'NTR: chlorine testing' - id: https://api.github.com/repos/obi-ontology/obi/issues/905 label: 'NTR: control eligibility check' - id: https://api.github.com/repos/obi-ontology/obi/issues/906 label: 'NTR: specimen transportation' - id: https://api.github.com/repos/obi-ontology/obi/issues/907 label: 'NTR: skin pinch test' - id: https://api.github.com/repos/obi-ontology/obi/issues/908 label: 'NTR: skin return process' - id: https://api.github.com/repos/obi-ontology/obi/issues/909 label: 'NTR: stool examination' - id: https://api.github.com/repos/obi-ontology/obi/issues/91 label: cell culturing - id: https://api.github.com/repos/obi-ontology/obi/issues/910 label: swab specimens - id: https://api.github.com/repos/obi-ontology/obi/issues/911 label: 'NTR: assay attempt' - id: https://api.github.com/repos/obi-ontology/obi/issues/912 label: Add editing instructions - id: https://api.github.com/repos/obi-ontology/obi/issues/913 label: testing with test obsolete - id: https://api.github.com/repos/obi-ontology/obi/issues/914 label: "changed derives from for human specimen set to derives from part of. \u2026" - id: https://api.github.com/repos/obi-ontology/obi/issues/915 label: Merge midlevel-assays into assays template - id: https://api.github.com/repos/obi-ontology/obi/issues/916 label: Describe templates in README - id: https://api.github.com/repos/obi-ontology/obi/issues/917 label: process is BFO_0000007 or BFO_0000015 ? - id: https://api.github.com/repos/obi-ontology/obi/issues/918 label: 'Add new terms for jahilton (#828, #875, #876)' - id: https://api.github.com/repos/obi-ontology/obi/issues/919 label: We have been using the wrong dublin core URI to indicate license all this time - id: https://api.github.com/repos/obi-ontology/obi/issues/92 label: cell synchronization - id: https://api.github.com/repos/obi-ontology/obi/issues/920 label: 'Term request: defined population inclusion criteria' - id: https://api.github.com/repos/obi-ontology/obi/issues/921 label: 'GO: molecular_function is imported under BFO:function' - id: https://api.github.com/repos/obi-ontology/obi/issues/922 label: 'issues discussed 20180230 #919 #859 #831' - id: https://api.github.com/repos/obi-ontology/obi/issues/923 label: ' # 863' - id: https://api.github.com/repos/obi-ontology/obi/issues/924 label: amend patch clamp terms for Brenda Farrell - id: https://api.github.com/repos/obi-ontology/obi/issues/925 label: add new term 'patch-clamp voltage clamp assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/926 label: term request 'whole-cell patch-clamp voltage clamp assay' - id: https://api.github.com/repos/obi-ontology/obi/issues/927 label: term request 'digital acquisition card' - id: https://api.github.com/repos/obi-ontology/obi/issues/928 label: term request 'pipette pressure clamp' - id: https://api.github.com/repos/obi-ontology/obi/issues/929 label: Move 'planned process' to a more general ontology, and simplify definition - id: https://api.github.com/repos/obi-ontology/obi/issues/93 label: Tree - id: https://api.github.com/repos/obi-ontology/obi/issues/930 label: remove paired- or single-ended binary choice from SOLiD and Solexa sequencing assays? - id: https://api.github.com/repos/obi-ontology/obi/issues/931 label: Equivalence axiom for gene knockdown assay is too inclusive - id: https://api.github.com/repos/obi-ontology/obi/issues/932 label: 'defined population inclusion criterion #920' - id: https://api.github.com/repos/obi-ontology/obi/issues/933 label: 'demoted gene knockdown assay equivalence axiom to subClassOf #931' - id: https://api.github.com/repos/obi-ontology/obi/issues/934 label: 'New terms for the Ontology for RNA Sequencing ' - id: https://api.github.com/repos/obi-ontology/obi/issues/935 label: Replace obsolete GO 'protein complex' with 'protein-containing complex'? - id: https://api.github.com/repos/obi-ontology/obi/issues/936 label: 'Move GO:molecular_function under ''process'', fixes #921' - id: https://api.github.com/repos/obi-ontology/obi/issues/937 label: Add new release candidate 2018-05-23 - id: https://api.github.com/repos/obi-ontology/obi/issues/938 label: Correct cDNA Library concept - id: https://api.github.com/repos/obi-ontology/obi/issues/939 label: 'NTRs: nuclear ligation assay children' - id: https://api.github.com/repos/obi-ontology/obi/issues/94 label: dendrogram - id: https://api.github.com/repos/obi-ontology/obi/issues/940 label: Error loading modules in OBI using TBC - id: https://api.github.com/repos/obi-ontology/obi/issues/941 label: 'NTR: convolved/deconvolved sequence data and ?term label mismatches' - id: https://api.github.com/repos/obi-ontology/obi/issues/942 label: Correct definition, alt terms for OBI_0000650 differential expression analysis data transformation - id: https://api.github.com/repos/obi-ontology/obi/issues/943 label: Move all assays to module - id: https://api.github.com/repos/obi-ontology/obi/issues/944 label: New terms for sequence analysis - id: https://api.github.com/repos/obi-ontology/obi/issues/945 label: 'Either change ''Measurement Datum'' to ''Datum'' or add new ''Datum'' class ' - id: https://api.github.com/repos/obi-ontology/obi/issues/946 label: Material Processing > Epitope Tagging - id: https://api.github.com/repos/obi-ontology/obi/issues/947 label: Sequence analysis - id: https://api.github.com/repos/obi-ontology/obi/issues/948 label: 'NTR: machine learning technique' - id: https://api.github.com/repos/obi-ontology/obi/issues/949 label: 'DAQ card, issue #927' - id: https://api.github.com/repos/obi-ontology/obi/issues/95 label: time series - id: https://api.github.com/repos/obi-ontology/obi/issues/950 label: 'NTR: transcriptome assembly' - id: https://api.github.com/repos/obi-ontology/obi/issues/951 label: Try ROBOT `report` on OBI - id: https://api.github.com/repos/obi-ontology/obi/issues/952 label: Review 'assay antigen role' - id: https://api.github.com/repos/obi-ontology/obi/issues/953 label: Extension of OBI ontology with the term metabolite fingerprinting - id: https://api.github.com/repos/obi-ontology/obi/issues/954 label: 'machine learning inc. supervised and unsupervised #948' - id: https://api.github.com/repos/obi-ontology/obi/issues/955 label: Remove spurious underscores - id: https://api.github.com/repos/obi-ontology/obi/issues/956 label: Add new study designs - id: https://api.github.com/repos/obi-ontology/obi/issues/957 label: Add new release candidate 2018-08-27 - id: https://api.github.com/repos/obi-ontology/obi/issues/958 label: Run ELK reasoner for Travis checks - id: https://api.github.com/repos/obi-ontology/obi/issues/959 label: Add reasoning to test - id: https://api.github.com/repos/obi-ontology/obi/issues/96 label: cross-sectional data - id: https://api.github.com/repos/obi-ontology/obi/issues/960 label: broken see also link - id: https://api.github.com/repos/obi-ontology/obi/issues/961 label: RDF-centric checks on https://raw.githubusercontent.com/obi-ontology/obi/rc-2018-08-27/obi.owl - id: https://api.github.com/repos/obi-ontology/obi/issues/962 label: 'NTR: citizen science design' - id: https://api.github.com/repos/obi-ontology/obi/issues/963 label: OBI asserts a GO:molecular function to be a subclass of GO:biological process - id: https://api.github.com/repos/obi-ontology/obi/issues/964 label: update description annotation - id: https://api.github.com/repos/obi-ontology/obi/issues/965 label: 'NTR: second-harmonic imaging microscopy' - id: https://api.github.com/repos/obi-ontology/obi/issues/966 label: 'Add new classes for #939' - id: https://api.github.com/repos/obi-ontology/obi/issues/967 label: Fixes Issues 941 and 942 - id: https://api.github.com/repos/obi-ontology/obi/issues/968 label: Matching categorical measurement data and specifications - id: https://api.github.com/repos/obi-ontology/obi/issues/969 label: Sort out sampling process in relation to STATO_statistical sampling - id: https://api.github.com/repos/obi-ontology/obi/issues/97 label: purification comments by Chris Taylor - id: https://api.github.com/repos/obi-ontology/obi/issues/970 label: Specimen collection processes with subprocesses - id: https://api.github.com/repos/obi-ontology/obi/issues/971 label: 'NTR: longitudinal study design' - id: https://api.github.com/repos/obi-ontology/obi/issues/972 label: Wiki Guidelines - id: https://api.github.com/repos/obi-ontology/obi/issues/973 label: Obsolete PATO terms in OBI - id: https://api.github.com/repos/obi-ontology/obi/issues/974 label: need a place for images belonging to wiki articles - id: https://api.github.com/repos/obi-ontology/obi/issues/975 label: Curation status in assays.tsv should use labels - id: https://api.github.com/repos/obi-ontology/obi/issues/976 label: Better assay browsing - id: https://api.github.com/repos/obi-ontology/obi/issues/977 label: Improve assay hierarchy - id: https://api.github.com/repos/obi-ontology/obi/issues/978 label: Rename 'ID' column to 'Ontology ID' in all templates - id: https://api.github.com/repos/obi-ontology/obi/issues/979 label: 'added obo:OMIABIS_0001019 to onfofox template for issue #971' - id: https://api.github.com/repos/obi-ontology/obi/issues/98 label: biomaterial review - external terms - id: https://api.github.com/repos/obi-ontology/obi/issues/980 label: Change 'ID' to 'Ontology ID' in templates - id: https://api.github.com/repos/obi-ontology/obi/issues/981 label: time stamped measurement datum - id: https://api.github.com/repos/obi-ontology/obi/issues/982 label: What's the Range of 'specifies value of' - id: https://api.github.com/repos/obi-ontology/obi/issues/983 label: Why does OBI use owl:real as the Range for 'has specified numeric value'? - id: https://api.github.com/repos/obi-ontology/obi/issues/984 label: Which xsd types and triple patterns to use for dates of birth? - id: https://api.github.com/repos/obi-ontology/obi/issues/985 label: Are string data values part of the value specification framework? - id: https://api.github.com/repos/obi-ontology/obi/issues/986 label: 'chemical solution needs different ancestors in OBI ' - id: https://api.github.com/repos/obi-ontology/obi/issues/987 label: '''some'' vs ''only'' restrictions' - id: https://api.github.com/repos/obi-ontology/obi/issues/988 label: 'IAO: Directive Information Entity' - id: https://api.github.com/repos/obi-ontology/obi/issues/989 label: categorical measurement datum referring to existing qualities - id: https://api.github.com/repos/obi-ontology/obi/issues/99 label: photo - id: https://api.github.com/repos/obi-ontology/obi/issues/990 label: 'NTR: microbiome sequencing design' - id: https://api.github.com/repos/obi-ontology/obi/issues/991 label: Request to add terms to study design - id: https://api.github.com/repos/obi-ontology/obi/issues/992 label: Fix xml:base and external-byhand.owl IRI - id: https://api.github.com/repos/obi-ontology/obi/issues/993 label: OBI and OMRSE both have patient roles - id: https://api.github.com/repos/obi-ontology/obi/issues/994 label: Organism and BFO:Object v. BFO:Material Entity - id: https://api.github.com/repos/obi-ontology/obi/issues/995 label: 'single cell RNA sequencing assay ' - id: https://api.github.com/repos/obi-ontology/obi/issues/996 label: 'created OBI_9000001 "has literal representation" in response to issue #985' - id: https://api.github.com/repos/obi-ontology/obi/issues/997 label: 'NTR: enrichment culture medium' - id: https://api.github.com/repos/obi-ontology/obi/issues/998 label: 'added swab specimen and process as per issue #910' - id: https://api.github.com/repos/obi-ontology/obi/issues/999 label: Remove rogue ROBOT, see robot#385 embeddings: null