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{'id': '62', 'type': 'identifier', 'children': [], 'value': 'proteins'}, {'id': '63', 'type': 'block', 'children': ['64']}; {'id': '64', 'type': 'if_statement', 'children': ['65', '70', '78']}, {'id': '65', 'type': 'call', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '67', 'type': 'argument_list', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'protein'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'tuple'}; {'id': '70', 'type': 'block', 'children': ['71']}, {'id': '71', 'type': 'expression_statement', 'children': ['72']}; {'id': '72', 'type': 'call', 'children': ['73', '76']}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'proteinTuples'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'protein'}; {'id': '78', 'type': 'else_clause', 'children': ['79']}, {'id': '79', 'type': 'block', 'children': ['80']}; {'id': '80', 'type': 'expression_statement', 'children': ['81']}, {'id': '81', 'type': 'call', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'proteinTuples'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '85', 'type': 'argument_list', 'children': ['86']}; {'id': '86', 'type': 'call', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'tuple'}; {'id': '88', 'type': 'argument_list', 'children': ['89']}, {'id': '89', 'type': 'list', 'children': ['90'], 'value': '[protein]'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'protein'}, {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'assignment', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'sort'}; 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{'id': '110', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '111', 'type': 'argument_list', 'children': ['112']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'protein'}, {'id': '113', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '114', 'type': 'block', 'children': ['115']}, {'id': '115', 'type': 'expression_statement', 'children': ['116']}; {'id': '116', 'type': 'assignment', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'protein'}; {'id': '118', 'type': 'subscript', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'protein'}; {'id': '120', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '121', 'type': 'expression_statement', 'children': ['122']}; {'id': '122', 'type': 'assignment', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'protPepFreq'}; {'id': '124', 'type': 'list_comprehension', 'children': ['125', '128']}, {'id': '125', 'type': 'subscript', 'children': ['126', '127']}; 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{'id': '206', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '207', 'type': 'block', 'children': ['208']}; {'id': '208', 'type': 'break_statement', 'children': []}, {'id': '209', 'type': 'else_clause', 'children': ['210']}; {'id': '210', 'type': 'block', 'children': ['211', '220', '227']}, {'id': '211', 'type': 'expression_statement', 'children': ['212']}; {'id': '212', 'type': 'assignment', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'protPepFrequency'}; {'id': '214', 'type': 'call', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'Counter'}; {'id': '216', 'type': 'argument_list', 'children': ['217']}, {'id': '217', 'type': 'subscript', 'children': ['218', '219']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'protToPeps'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'protein'}; {'id': '220', 'type': 'expression_statement', 'children': ['221']}, {'id': '221', 'type': 'call', 'children': ['222', '225']}; {'id': '222', 'type': 'attribute', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'pepFrequency'}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'subtract'}, {'id': '225', 'type': 'argument_list', 'children': ['226']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'protPepFrequency'}, {'id': '227', 'type': 'expression_statement', 'children': ['228']}; {'id': '228', 'type': 'call', 'children': ['229', '232']}, {'id': '229', 'type': 'attribute', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'redundantProteins'}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '232', 'type': 'argument_list', 'children': ['233']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'protein'}; {'id': '234', 'type': 'return_statement', 'children': ['235']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'redundantProteins'} | def _findRedundantProteins(protToPeps, pepToProts, proteins=None):
if proteins is None:
proteins = viewkeys(protToPeps)
pepFrequency = _getValueCounts(pepToProts)
protPepCounts = _getValueCounts(protToPeps)
getCount = operator.itemgetter(1)
getProt = operator.itemgetter(0)
proteinTuples = list()
for protein in proteins:
if isinstance(protein, tuple):
proteinTuples.append(protein)
else:
proteinTuples.append(tuple([protein]))
sort = list()
for protein in sorted(proteinTuples, reverse=True):
if len(protein) == 1:
protein = protein[0]
protPepFreq = [pepFrequency[pep] for pep in protToPeps[protein]]
if min(protPepFreq) > 1:
sortValue = (len(protPepFreq)*-1, sorted(protPepFreq, reverse=True))
sort.append((protein, sortValue))
sortedProteins = map(getProt, sorted(sort, key=getCount, reverse=True))
redundantProteins = set()
for protein in sortedProteins:
for pep in protToPeps[protein]:
if pepFrequency[pep] <= 1:
break
else:
protPepFrequency = Counter(protToPeps[protein])
pepFrequency.subtract(protPepFrequency)
redundantProteins.add(protein)
return redundantProteins |
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mergedProtToPeps = dict(protToPeps)
for proteins in proteinLists:
for protein in proteins:
peptides = mergedProtToPeps.pop(protein)
mergedProtein = tuple(sorted(proteins))
mergedProtToPeps[mergedProtein] = peptides
return mergedProtToPeps |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_list'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'foldername'}, {'id': '7', 'type': 'string', 'children': [], 'value': '"INBOX"'}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'reverse'}; {'id': '10', 'type': 'False', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'since'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'block', 'children': ['15', '33', '51', '68', '84', '97']}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'folder'}; {'id': '18', 'type': 'conditional_expression', 'children': ['19', '22', '23', '26', '27'], 'value': 'if'}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'folder'}; {'id': '22', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '23', 'type': 'comparison_operator', 'children': ['24', '25'], 'value': '=='}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'foldername'}, {'id': '25', 'type': 'string', 'children': [], 'value': '"INBOX"'}; {'id': '26', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': '_getfolder'}, {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'foldername'}, {'id': '33', 'type': 'function_definition', 'children': ['34', '35', '37']}; {'id': '34', 'type': 'function_name', 'children': [], 'value': 'sortcmp'}, {'id': '35', 'type': 'parameters', 'children': ['36']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '37', 'type': 'block', 'children': ['38']}; {'id': '38', 'type': 'try_statement', 'children': ['39', '46']}, {'id': '39', 'type': 'block', 'children': ['40']}; {'id': '40', 'type': 'return_statement', 'children': ['41']}, {'id': '41', 'type': 'attribute', 'children': ['42', '45']}; {'id': '42', 'type': 'subscript', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '44', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'date'}; {'id': '46', 'type': 'except_clause', 'children': ['47']}, {'id': '47', 'type': 'block', 'children': ['48']}; {'id': '48', 'type': 'return_statement', 'children': ['49']}, {'id': '49', 'type': 'unary_operator', 'children': ['50'], 'value': '-'}; {'id': '50', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'lst'}; {'id': '54', 'type': 'conditional_expression', 'children': ['55', '60', '62'], 'value': 'if'}, {'id': '55', 'type': 'call', 'children': ['56', '59']}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'folder'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '59', 'type': 'argument_list', 'children': []}; {'id': '60', 'type': 'not_operator', 'children': ['61']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'since'}; {'id': '62', 'type': 'call', 'children': ['63', '66']}, {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'folder'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'items_since'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'since'}; {'id': '68', 'type': 'expression_statement', 'children': ['69']}, {'id': '69', 'type': 'assignment', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'sorted_lst'}, {'id': '71', 'type': 'call', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '73', 'type': 'argument_list', 'children': ['74', '75', '78']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'lst'}, {'id': '75', 'type': 'keyword_argument', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'sortcmp'}; {'id': '78', 'type': 'keyword_argument', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'reverse'}; {'id': '80', 'type': 'conditional_expression', 'children': ['81', '82', '83'], 'value': 'if'}, {'id': '81', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'reverse'}, {'id': '83', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}, {'id': '85', 'type': 'assignment', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'itemlist'}, {'id': '87', 'type': 'list_comprehension', 'children': ['88', '92']}; {'id': '88', 'type': 'tuple', 'children': ['89', '90', '91']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'folder'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '92', 'type': 'for_in_clause', 'children': ['93', '96']}, {'id': '93', 'type': 'pattern_list', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'sorted_lst'}, {'id': '97', 'type': 'return_statement', 'children': ['98']} | def _list(self, foldername="INBOX", reverse=False, since=None):
folder = self.folder \
if foldername == "INBOX" \
else self._getfolder(foldername)
def sortcmp(d):
try:
return d[1].date
except:
return -1
lst = folder.items() if not since else folder.items_since(since)
sorted_lst = sorted(lst, key=sortcmp, reverse=1 if reverse else 0)
itemlist = [(folder, key, msg) for key,msg in sorted_lst]
return itemlist |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_entries'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6']}; {'id': '6', 'type': 'return_statement', 'children': ['7']}, {'id': '7', 'type': 'call', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '9', 'type': 'argument_list', 'children': ['10', '13', '18']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '13', 'type': 'keyword_argument', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'sort_func'}; {'id': '18', 'type': 'keyword_argument', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'reverse'}; {'id': '20', 'type': 'call', 'children': ['21', '24']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'get_reverse'} | def sort_entries(self):
return sorted(self.data, key=self.sort_func, reverse=self.get_reverse()) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'expectedLabelPosition'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'peptide'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'labelStateInfo'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'sequence'}; {'id': '8', 'type': 'None', 'children': []}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'modPositions'}, {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'block', 'children': ['13', '32', '48', '54', '136', '217', '238']}, {'id': '13', 'type': 'if_statement', 'children': ['14', '17']}; {'id': '14', 'type': 'comparison_operator', 'children': ['15', '16'], 'value': 'is'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'modPositions'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'block', 'children': ['18']}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'modPositions'}, {'id': '21', 'type': 'call', 'children': ['22', '27']}; {'id': '22', 'type': 'attribute', 'children': ['23', '26']}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'maspy'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'peptidemethods'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'returnModPositions'}, {'id': '27', 'type': 'argument_list', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'peptide'}, {'id': '29', 'type': 'keyword_argument', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'indexStart'}, {'id': '31', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '32', 'type': 'if_statement', 'children': ['33', '36']}, {'id': '33', 'type': 'comparison_operator', 'children': ['34', '35'], 'value': 'is'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'sequence'}, {'id': '35', 'type': 'None', 'children': []}; {'id': '36', 'type': 'block', 'children': ['37']}, {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'assignment', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'sequence'}; {'id': '40', 'type': 'call', 'children': ['41', '46']}, {'id': '41', 'type': 'attribute', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'maspy'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'peptidemethods'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'removeModifications'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'peptide'}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'assignment', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'currLabelMods'}, {'id': '51', 'type': 'call', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'dict'}, {'id': '53', 'type': 'argument_list', 'children': []}; {'id': '54', 'type': 'for_statement', 'children': ['55', '58', '64']}, {'id': '55', 'type': 'pattern_list', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'labelPosition'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'labelSymbols'}; {'id': '58', 'type': 'call', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'viewitems'}; {'id': '60', 'type': 'argument_list', 'children': ['61']}, {'id': '61', 'type': 'subscript', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'labelStateInfo'}, {'id': '63', 'type': 'string', 'children': [], 'value': "'aminoAcidLabels'"}; {'id': '64', 'type': 'block', 'children': ['65', '74']}, {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'assignment', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'labelSymbols'}; {'id': '68', 'type': 'call', 'children': ['69', '72']}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'aux'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'toList'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'labelSymbols'}; {'id': '74', 'type': 'if_statement', 'children': ['75', '79', '81', '105']}, {'id': '75', 'type': 'comparison_operator', 'children': ['76', '77'], 'value': '=='}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'labelSymbols'}, {'id': '77', 'type': 'list', 'children': ['78'], 'value': "['']"}; {'id': '78', 'type': 'string', 'children': [], 'value': "''"}, {'id': '79', 'type': 'block', 'children': ['80']}; {'id': '80', 'type': 'pass_statement', 'children': []}, {'id': '81', 'type': 'elif_clause', 'children': ['82', '85']}; {'id': '82', 'type': 'comparison_operator', 'children': ['83', '84'], 'value': '=='}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'labelPosition'}; {'id': '84', 'type': 'string', 'children': [], 'value': "'nTerm'"}, {'id': '85', 'type': 'block', 'children': ['86', '96']}; {'id': '86', 'type': 'expression_statement', 'children': ['87']}, {'id': '87', 'type': 'call', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'currLabelMods'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'setdefault'}, {'id': '91', 'type': 'argument_list', 'children': ['92', '93']}; {'id': '92', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '93', 'type': 'call', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '95', 'type': 'argument_list', 'children': []}; {'id': '96', 'type': 'expression_statement', 'children': ['97']}, {'id': '97', 'type': 'call', 'children': ['98', '103']}; {'id': '98', 'type': 'attribute', 'children': ['99', '102']}, {'id': '99', 'type': 'subscript', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'currLabelMods'}, {'id': '101', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'extend'}, {'id': '103', 'type': 'argument_list', 'children': ['104']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'labelSymbols'}, {'id': '105', 'type': 'else_clause', 'children': ['106']}; {'id': '106', 'type': 'block', 'children': ['107']}, {'id': '107', 'type': 'for_statement', 'children': ['108', '109', '116']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'sequencePosition'}, {'id': '109', 'type': 'call', 'children': ['110', '113']}; {'id': '110', 'type': 'attribute', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'aux'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'findAllSubstrings'}, {'id': '113', 'type': 'argument_list', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'sequence'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'labelPosition'}; {'id': '116', 'type': 'block', 'children': ['117', '127']}, {'id': '117', 'type': 'expression_statement', 'children': ['118']}; {'id': '118', 'type': 'call', 'children': ['119', '122']}, {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'currLabelMods'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'setdefault'}; {'id': '122', 'type': 'argument_list', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'sequencePosition'}; {'id': '124', 'type': 'call', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '126', 'type': 'argument_list', 'children': []}, {'id': '127', 'type': 'expression_statement', 'children': ['128']}; {'id': '128', 'type': 'call', 'children': ['129', '134']}, {'id': '129', 'type': 'attribute', 'children': ['130', '133']}; {'id': '130', 'type': 'subscript', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'currLabelMods'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'sequencePosition'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'extend'}; {'id': '134', 'type': 'argument_list', 'children': ['135']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'labelSymbols'}; {'id': '136', 'type': 'if_statement', 'children': ['137', '142']}, {'id': '137', 'type': 'comparison_operator', 'children': ['138', '141'], 'value': 'is'}; {'id': '138', 'type': 'subscript', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'labelStateInfo'}; {'id': '140', 'type': 'string', 'children': [], 'value': "'excludingModifications'"}, {'id': '141', 'type': 'None', 'children': []}; {'id': '142', 'type': 'block', 'children': ['143']}, {'id': '143', 'type': 'for_statement', 'children': ['144', '147', '153']}; {'id': '144', 'type': 'pattern_list', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'excludingMod'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'excludedLabelSymbol'}, {'id': '147', 'type': 'call', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'viewitems'}, {'id': '149', 'type': 'argument_list', 'children': ['150']}; {'id': '150', 'type': 'subscript', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'labelStateInfo'}; {'id': '152', 'type': 'string', 'children': [], 'value': "'excludingModifications'"}, {'id': '153', 'type': 'block', 'children': ['154', '160']}; {'id': '154', 'type': 'if_statement', 'children': ['155', '158']}, {'id': '155', 'type': 'comparison_operator', 'children': ['156', '157'], 'value': 'not'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'excludingMod'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'modPositions'}; {'id': '158', 'type': 'block', 'children': ['159']}, {'id': '159', 'type': 'continue_statement', 'children': []}; {'id': '160', 'type': 'for_statement', 'children': ['161', '162', '165']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'excludingModPos'}; {'id': '162', 'type': 'subscript', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'modPositions'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'excludingMod'}, {'id': '165', 'type': 'block', 'children': ['166', '172', '180']}; {'id': '166', 'type': 'if_statement', 'children': ['167', '170']}, {'id': '167', 'type': 'comparison_operator', 'children': ['168', '169'], 'value': 'not'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'excludingModPos'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'currLabelMods'}; {'id': '170', 'type': 'block', 'children': ['171']}, {'id': '171', 'type': 'continue_statement', 'children': []}; {'id': '172', 'type': 'if_statement', 'children': ['173', '178']}, {'id': '173', 'type': 'comparison_operator', 'children': ['174', '175'], 'value': 'not'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'excludedLabelSymbol'}, {'id': '175', 'type': 'subscript', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'currLabelMods'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'excludingModPos'}; {'id': '178', 'type': 'block', 'children': ['179']}, {'id': '179', 'type': 'continue_statement', 'children': []}; {'id': '180', 'type': 'if_statement', 'children': ['181', '189', '195']}, {'id': '181', 'type': 'comparison_operator', 'children': ['182', '188'], 'value': '=='}; {'id': '182', 'type': 'call', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '184', 'type': 'argument_list', 'children': ['185']}, {'id': '185', 'type': 'subscript', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'currLabelMods'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'excludingModPos'}; {'id': '188', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '189', 'type': 'block', 'children': ['190']}; {'id': '190', 'type': 'delete_statement', 'children': ['191']}, {'id': '191', 'type': 'parenthesized_expression', 'children': ['192'], 'value': '()'}; {'id': '192', 'type': 'subscript', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'currLabelMods'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'excludingModPos'}, {'id': '195', 'type': 'else_clause', 'children': ['196']}; {'id': '196', 'type': 'block', 'children': ['197', '208']}, {'id': '197', 'type': 'expression_statement', 'children': ['198']}; {'id': '198', 'type': 'assignment', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'excludedModIndex'}; {'id': '200', 'type': 'call', 'children': ['201', '206']}, {'id': '201', 'type': 'attribute', 'children': ['202', '205']}; {'id': '202', 'type': 'subscript', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'currLabelMods'}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'excludingModPos'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '206', 'type': 'argument_list', 'children': ['207']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'excludedLabelSymbol'}; {'id': '208', 'type': 'expression_statement', 'children': ['209']}, {'id': '209', 'type': 'call', 'children': ['210', '215']}; {'id': '210', 'type': 'attribute', 'children': ['211', '214']}, {'id': '211', 'type': 'subscript', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'currLabelMods'}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'excludingModPos'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'pop'}, {'id': '215', 'type': 'argument_list', 'children': ['216']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'excludedModIndex'}, {'id': '217', 'type': 'for_statement', 'children': ['218', '219', '226']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'sequencePosition'}, {'id': '219', 'type': 'call', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '221', 'type': 'argument_list', 'children': ['222']}; {'id': '222', 'type': 'call', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'viewkeys'}; {'id': '224', 'type': 'argument_list', 'children': ['225']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'currLabelMods'}; {'id': '226', 'type': 'block', 'children': ['227']}, {'id': '227', 'type': 'expression_statement', 'children': ['228']}; {'id': '228', 'type': 'assignment', 'children': ['229', '232']}, {'id': '229', 'type': 'subscript', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'currLabelMods'}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'sequencePosition'}; {'id': '232', 'type': 'call', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '234', 'type': 'argument_list', 'children': ['235']}, {'id': '235', 'type': 'subscript', 'children': ['236', '237']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'currLabelMods'}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'sequencePosition'}; {'id': '238', 'type': 'return_statement', 'children': ['239']}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'currLabelMods'} | def expectedLabelPosition(peptide, labelStateInfo, sequence=None,
modPositions=None):
if modPositions is None:
modPositions = maspy.peptidemethods.returnModPositions(peptide,
indexStart=0
)
if sequence is None:
sequence = maspy.peptidemethods.removeModifications(peptide)
currLabelMods = dict()
for labelPosition, labelSymbols in viewitems(labelStateInfo['aminoAcidLabels']):
labelSymbols = aux.toList(labelSymbols)
if labelSymbols == ['']:
pass
elif labelPosition == 'nTerm':
currLabelMods.setdefault(0, list())
currLabelMods[0].extend(labelSymbols)
else:
for sequencePosition in aux.findAllSubstrings(sequence,
labelPosition):
currLabelMods.setdefault(sequencePosition, list())
currLabelMods[sequencePosition].extend(labelSymbols)
if labelStateInfo['excludingModifications'] is not None:
for excludingMod, excludedLabelSymbol in viewitems(labelStateInfo['excludingModifications']):
if excludingMod not in modPositions:
continue
for excludingModPos in modPositions[excludingMod]:
if excludingModPos not in currLabelMods:
continue
if excludedLabelSymbol not in currLabelMods[excludingModPos]:
continue
if len(currLabelMods[excludingModPos]) == 1:
del(currLabelMods[excludingModPos])
else:
excludedModIndex = currLabelMods[excludingModPos].index(excludedLabelSymbol)
currLabelMods[excludingModPos].pop(excludedModIndex)
for sequencePosition in list(viewkeys(currLabelMods)):
currLabelMods[sequencePosition] = sorted(currLabelMods[sequencePosition])
return currLabelMods |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'rank'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'member'}; {'id': '6', 'type': 'block', 'children': ['7', '29']}, {'id': '7', 'type': 'if_statement', 'children': ['8', '11']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'reversed'}, {'id': '11', 'type': 'block', 'children': ['12']}; {'id': '12', 'type': 'return_statement', 'children': ['13']}, {'id': '13', 'type': 'call', 'children': ['14', '19']}; {'id': '14', 'type': 'attribute', 'children': ['15', '18']}, {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': '_client'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'zrevrank'}, {'id': '19', 'type': 'argument_list', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'key_prefix'}, {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': '_dumps'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'member'}, {'id': '29', 'type': 'return_statement', 'children': ['30']}; {'id': '30', 'type': 'call', 'children': ['31', '36']}, {'id': '31', 'type': 'attribute', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': '_client'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'zrank'}; {'id': '36', 'type': 'argument_list', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'key_prefix'}; {'id': '40', 'type': 'call', 'children': ['41', '44']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': '_dumps'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'member'} | def rank(self, member):
if self.reversed:
return self._client.zrevrank(self.key_prefix, self._dumps(member))
return self._client.zrank(self.key_prefix, self._dumps(member)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'prepareSiiImport'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9', '10', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'siiContainer'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'specfile'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'qcAttr'}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'qcLargerBetter'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'qcCutoff'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'rankAttr'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'rankLargerBetter'}; {'id': '12', 'type': 'block', 'children': ['13', '35', '45', '55', '65', '75']}, {'id': '13', 'type': 'if_statement', 'children': ['14', '19', '28']}; {'id': '14', 'type': 'comparison_operator', 'children': ['15', '16'], 'value': 'not'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'specfile'}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'siiContainer'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'info'}, {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'siiContainer'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'addSpecfile'}, {'id': '25', 'type': 'argument_list', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'specfile'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '28', 'type': 'else_clause', 'children': ['29']}, {'id': '29', 'type': 'block', 'children': ['30']}; {'id': '30', 'type': 'raise_statement', 'children': ['31']}, {'id': '31', 'type': 'call', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'Exception'}, {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'string', 'children': [], 'value': "'...'"}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '44']}, {'id': '37', 'type': 'subscript', 'children': ['38', '43']}; {'id': '38', 'type': 'subscript', 'children': ['39', '42']}, {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'siiContainer'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'specfile'}, {'id': '43', 'type': 'string', 'children': [], 'value': "'qcAttr'"}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'qcAttr'}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '54']}, {'id': '47', 'type': 'subscript', 'children': ['48', '53']}; {'id': '48', 'type': 'subscript', 'children': ['49', '52']}, {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'siiContainer'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'specfile'}, {'id': '53', 'type': 'string', 'children': [], 'value': "'qcLargerBetter'"}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'qcLargerBetter'}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'assignment', 'children': ['57', '64']}, {'id': '57', 'type': 'subscript', 'children': ['58', '63']}; {'id': '58', 'type': 'subscript', 'children': ['59', '62']}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'siiContainer'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'specfile'}, {'id': '63', 'type': 'string', 'children': [], 'value': "'qcCutoff'"}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'qcCutoff'}, {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'assignment', 'children': ['67', '74']}, {'id': '67', 'type': 'subscript', 'children': ['68', '73']}; {'id': '68', 'type': 'subscript', 'children': ['69', '72']}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'siiContainer'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'specfile'}, {'id': '73', 'type': 'string', 'children': [], 'value': "'rankAttr'"}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'rankAttr'}, {'id': '75', 'type': 'expression_statement', 'children': ['76']}; {'id': '76', 'type': 'assignment', 'children': ['77', '84']}, {'id': '77', 'type': 'subscript', 'children': ['78', '83']}; {'id': '78', 'type': 'subscript', 'children': ['79', '82']}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'siiContainer'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'specfile'}, {'id': '83', 'type': 'string', 'children': [], 'value': "'rankLargerBetter'"} | def prepareSiiImport(siiContainer, specfile, path, qcAttr, qcLargerBetter,
qcCutoff, rankAttr, rankLargerBetter):
if specfile not in siiContainer.info:
siiContainer.addSpecfile(specfile, path)
else:
raise Exception('...')
siiContainer.info[specfile]['qcAttr'] = qcAttr
siiContainer.info[specfile]['qcLargerBetter'] = qcLargerBetter
siiContainer.info[specfile]['qcCutoff'] = qcCutoff
siiContainer.info[specfile]['rankAttr'] = rankAttr
siiContainer.info[specfile]['rankLargerBetter'] = rankLargerBetter |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'find_nearest'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'x0'}; {'id': '6', 'type': 'type', 'children': ['7']}, {'id': '7', 'type': 'generic_type', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'Tuple'}, {'id': '9', 'type': 'type_parameter', 'children': ['10', '12']}; {'id': '10', 'type': 'type', 'children': ['11']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '12', 'type': 'type', 'children': ['13']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'Any'}; {'id': '14', 'type': 'block', 'children': ['15', '24', '33', '51', '65', '77', '137']}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '18', 'type': 'call', 'children': ['19', '22']}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'asanyarray'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'x0'}, {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'atleast_1d'}, {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'x0'}, {'id': '33', 'type': 'if_statement', 'children': ['34', '45']}; {'id': '34', 'type': 'boolean_operator', 'children': ['35', '40'], 'value': 'or'}, {'id': '35', 'type': 'comparison_operator', 'children': ['36', '39'], 'value': '=='}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'size'}, {'id': '39', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '40', 'type': 'comparison_operator', 'children': ['41', '44'], 'value': '=='}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'x0'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'size'}; {'id': '44', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '45', 'type': 'block', 'children': ['46']}; {'id': '46', 'type': 'raise_statement', 'children': ['47']}, {'id': '47', 'type': 'call', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'string', 'children': [], 'value': "'empty input(s)'"}, {'id': '51', 'type': 'if_statement', 'children': ['52', '59']}; {'id': '52', 'type': 'comparison_operator', 'children': ['53', '56'], 'value': 'not'}, {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'x0'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'ndim'}; {'id': '56', 'type': 'tuple', 'children': ['57', '58']}, {'id': '57', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '58', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '59', 'type': 'block', 'children': ['60']}; {'id': '60', 'type': 'raise_statement', 'children': ['61']}, {'id': '61', 'type': 'call', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '63', 'type': 'argument_list', 'children': ['64']}; {'id': '64', 'type': 'string', 'children': [], 'value': "'2-D x0 not handled yet'"}, {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'assignment', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'ind'}; {'id': '68', 'type': 'call', 'children': ['69', '72']}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'empty_like'}; {'id': '72', 'type': 'argument_list', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'x0'}; {'id': '74', 'type': 'keyword_argument', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'dtype'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '77', 'type': 'for_statement', 'children': ['78', '81', '85']}; {'id': '78', 'type': 'pattern_list', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'xi'}, {'id': '81', 'type': 'call', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'enumerate'}, {'id': '83', 'type': 'argument_list', 'children': ['84']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'x0'}, {'id': '85', 'type': 'block', 'children': ['86']}; {'id': '86', 'type': 'if_statement', 'children': ['87', '113', '130']}, {'id': '87', 'type': 'boolean_operator', 'children': ['88', '91'], 'value': 'and'}; {'id': '88', 'type': 'comparison_operator', 'children': ['89', '90'], 'value': 'is'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'xi'}; {'id': '90', 'type': 'None', 'children': []}, {'id': '91', 'type': 'parenthesized_expression', 'children': ['92'], 'value': '()'}; {'id': '92', 'type': 'boolean_operator', 'children': ['93', '107'], 'value': 'or'}, {'id': '93', 'type': 'call', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '95', 'type': 'argument_list', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'xi'}, {'id': '97', 'type': 'tuple', 'children': ['98', '101', '104']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'datetime'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'datetime'}, {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'datetime'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'date'}; {'id': '104', 'type': 'attribute', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'datetime64'}, {'id': '107', 'type': 'call', 'children': ['108', '111']}; {'id': '108', 'type': 'attribute', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'isfinite'}, {'id': '111', 'type': 'argument_list', 'children': ['112']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'xi'}, {'id': '113', 'type': 'block', 'children': ['114']}; {'id': '114', 'type': 'expression_statement', 'children': ['115']}, {'id': '115', 'type': 'assignment', 'children': ['116', '119']}; {'id': '116', 'type': 'subscript', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'ind'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '119', 'type': 'call', 'children': ['120', '123']}; {'id': '120', 'type': 'attribute', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'nanargmin'}, {'id': '123', 'type': 'argument_list', 'children': ['124']}; {'id': '124', 'type': 'call', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'abs'}; {'id': '126', 'type': 'argument_list', 'children': ['127']}, {'id': '127', 'type': 'binary_operator', 'children': ['128', '129'], 'value': '-'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'xi'}; {'id': '130', 'type': 'else_clause', 'children': ['131']}, {'id': '131', 'type': 'block', 'children': ['132']}; {'id': '132', 'type': 'raise_statement', 'children': ['133']}, {'id': '133', 'type': 'call', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '135', 'type': 'argument_list', 'children': ['136']}; {'id': '136', 'type': 'string', 'children': [], 'value': "'x0 must NOT be None or NaN to avoid surprising None return value'"}, {'id': '137', 'type': 'return_statement', 'children': ['138']}; {'id': '138', 'type': 'expression_list', 'children': ['139', '146']}, {'id': '139', 'type': 'subscript', 'children': ['140', '145']}; {'id': '140', 'type': 'call', 'children': ['141', '144']}, {'id': '141', 'type': 'attribute', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'ind'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'squeeze'}; {'id': '144', 'type': 'argument_list', 'children': []}, {'id': '145', 'type': 'tuple', 'children': []}; {'id': '146', 'type': 'subscript', 'children': ['147', '154']}, {'id': '147', 'type': 'call', 'children': ['148', '153']}; {'id': '148', 'type': 'attribute', 'children': ['149', '152']}, {'id': '149', 'type': 'subscript', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'ind'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'squeeze'}, {'id': '153', 'type': 'argument_list', 'children': []} | def find_nearest(x, x0) -> Tuple[int, Any]:
x = np.asanyarray(x)
x0 = np.atleast_1d(x0)
if x.size == 0 or x0.size == 0:
raise ValueError('empty input(s)')
if x0.ndim not in (0, 1):
raise ValueError('2-D x0 not handled yet')
ind = np.empty_like(x0, dtype=int)
for i, xi in enumerate(x0):
if xi is not None and (isinstance(xi, (datetime.datetime, datetime.date, np.datetime64)) or np.isfinite(xi)):
ind[i] = np.nanargmin(abs(x-xi))
else:
raise ValueError('x0 must NOT be None or NaN to avoid surprising None return value')
return ind.squeeze()[()], x[ind].squeeze()[()] |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'primary_mrna'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'entrystream'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'parenttype'}, {'id': '7', 'type': 'string', 'children': [], 'value': "'gene'"}; {'id': '8', 'type': 'block', 'children': ['9']}, {'id': '9', 'type': 'for_statement', 'children': ['10', '11', '12']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'entrystream'}; {'id': '12', 'type': 'block', 'children': ['13', '27', '73']}, {'id': '13', 'type': 'if_statement', 'children': ['14', '22']}; {'id': '14', 'type': 'not_operator', 'children': ['15']}, {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '17', 'type': 'argument_list', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'tag'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'Feature'}; {'id': '22', 'type': 'block', 'children': ['23', '26']}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'yield', 'children': ['25']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '26', 'type': 'continue_statement', 'children': []}, {'id': '27', 'type': 'for_statement', 'children': ['28', '29', '41']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '29', 'type': 'call', 'children': ['30', '35']}; {'id': '30', 'type': 'attribute', 'children': ['31', '34']}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'tag'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'select'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'features'}, {'id': '35', 'type': 'argument_list', 'children': ['36', '37', '38']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'parenttype'}; {'id': '38', 'type': 'keyword_argument', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'traverse'}; {'id': '40', 'type': 'True', 'children': []}, {'id': '41', 'type': 'block', 'children': ['42', '58', '67']}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'mrnas'}, {'id': '45', 'type': 'list_comprehension', 'children': ['46', '47', '52']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '47', 'type': 'for_in_clause', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'children'}; {'id': '52', 'type': 'if_clause', 'children': ['53']}, {'id': '53', 'type': 'comparison_operator', 'children': ['54', '57'], 'value': '=='}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '57', 'type': 'string', 'children': [], 'value': "'mRNA'"}; {'id': '58', 'type': 'if_statement', 'children': ['59', '65']}, {'id': '59', 'type': 'comparison_operator', 'children': ['60', '64'], 'value': '=='}; {'id': '60', 'type': 'call', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'mrnas'}; {'id': '64', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '65', 'type': 'block', 'children': ['66']}; {'id': '66', 'type': 'continue_statement', 'children': []}, {'id': '67', 'type': 'expression_statement', 'children': ['68']}; {'id': '68', 'type': 'call', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': '_emplace_pmrna'}; {'id': '70', 'type': 'argument_list', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'mrnas'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'yield', 'children': ['75']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'entry'} | def primary_mrna(entrystream, parenttype='gene'):
for entry in entrystream:
if not isinstance(entry, tag.Feature):
yield entry
continue
for parent in tag.select.features(entry, parenttype, traverse=True):
mrnas = [f for f in parent.children if f.type == 'mRNA']
if len(mrnas) == 0:
continue
_emplace_pmrna(mrnas, parent)
yield entry |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'notes'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'public_only'}, {'id': '7', 'type': 'False', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '28', '40', '54', '69', '129']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'tag_index'}; {'id': '12', 'type': 'call', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '14', 'type': 'generator_expression', 'children': ['15', '18']}, {'id': '15', 'type': 'tuple', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'tag'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '18', 'type': 'for_in_clause', 'children': ['19', '22']}, {'id': '19', 'type': 'pattern_list', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'tag'}; {'id': '22', 'type': 'call', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'Note'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'TAGS'}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'assignment', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'notes'}, {'id': '31', 'type': 'call', 'children': ['32', '37']}; {'id': '32', 'type': 'attribute', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'note_set'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'order_by'}, {'id': '37', 'type': 'argument_list', 'children': ['38', '39']}; {'id': '38', 'type': 'string', 'children': [], 'value': "'-sort_num'"}, {'id': '39', 'type': 'string', 'children': [], 'value': "'created'"}; {'id': '40', 'type': 'if_statement', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'public_only'}; {'id': '42', 'type': 'block', 'children': ['43']}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'notes'}; {'id': '46', 'type': 'call', 'children': ['47', '50']}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'notes'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '50', 'type': 'argument_list', 'children': ['51']}, {'id': '51', 'type': 'keyword_argument', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'is_public'}, {'id': '53', 'type': 'True', 'children': []}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}, {'id': '55', 'type': 'assignment', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'known_issues'}, {'id': '57', 'type': 'list_comprehension', 'children': ['58', '59', '62']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '59', 'type': 'for_in_clause', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'notes'}; {'id': '62', 'type': 'if_clause', 'children': ['63']}, {'id': '63', 'type': 'call', 'children': ['64', '67']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'is_known_issue_for'}, {'id': '67', 'type': 'argument_list', 'children': ['68']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '69', 'type': 'expression_statement', 'children': ['70']}; {'id': '70', 'type': 'assignment', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'new_features'}; {'id': '72', 'type': 'call', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '74', 'type': 'argument_list', 'children': ['75', '105', '126']}, {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '77', 'type': 'argument_list', 'children': ['78', '91']}; {'id': '78', 'type': 'generator_expression', 'children': ['79', '80', '83']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '80', 'type': 'for_in_clause', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'notes'}, {'id': '83', 'type': 'if_clause', 'children': ['84']}; {'id': '84', 'type': 'not_operator', 'children': ['85']}, {'id': '85', 'type': 'call', 'children': ['86', '89']}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'is_known_issue_for'}, {'id': '89', 'type': 'argument_list', 'children': ['90']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '91', 'type': 'keyword_argument', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '93', 'type': 'lambda', 'children': ['94', '96']}; {'id': '94', 'type': 'lambda_parameters', 'children': ['95']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'note'}; {'id': '96', 'type': 'call', 'children': ['97', '100']}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'tag_index'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '100', 'type': 'argument_list', 'children': ['101', '104']}, {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'note'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'tag'}; {'id': '104', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '105', 'type': 'keyword_argument', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '107', 'type': 'lambda', 'children': ['108', '110']}; {'id': '108', 'type': 'lambda_parameters', 'children': ['109']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '110', 'type': 'boolean_operator', 'children': ['111', '116'], 'value': 'and'}, {'id': '111', 'type': 'comparison_operator', 'children': ['112', '115'], 'value': '=='}; {'id': '112', 'type': 'attribute', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'tag'}, {'id': '115', 'type': 'string', 'children': [], 'value': "'Fixed'"}; {'id': '116', 'type': 'call', 'children': ['117', '122']}, {'id': '117', 'type': 'attribute', 'children': ['118', '121']}; {'id': '118', 'type': 'attribute', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'note'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'startswith'}; {'id': '122', 'type': 'argument_list', 'children': ['123']}, {'id': '123', 'type': 'attribute', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'version'}; {'id': '126', 'type': 'keyword_argument', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'reverse'}; {'id': '128', 'type': 'True', 'children': []}, {'id': '129', 'type': 'return_statement', 'children': ['130']}; {'id': '130', 'type': 'expression_list', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'new_features'} | def notes(self, public_only=False):
tag_index = dict((tag, i) for i, tag in enumerate(Note.TAGS))
notes = self.note_set.order_by('-sort_num', 'created')
if public_only:
notes = notes.filter(is_public=True)
known_issues = [n for n in notes if n.is_known_issue_for(self)]
new_features = sorted(
sorted(
(n for n in notes if not n.is_known_issue_for(self)),
key=lambda note: tag_index.get(note.tag, 0)),
key=lambda n: n.tag == 'Fixed' and n.note.startswith(self.version),
reverse=True)
return new_features, known_issues |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '18']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'dispatchlist'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'keyword_separator', 'children': []}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'author'}; {'id': '8', 'type': 'None', 'children': []}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'category'}, {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'subcategory'}; {'id': '14', 'type': 'None', 'children': []}, {'id': '15', 'type': 'default_parameter', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '17', 'type': 'string', 'children': [], 'value': "'new'"}; {'id': '18', 'type': 'block', 'children': ['19', '26', '35', '89', '119']}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '22', 'type': 'dictionary', 'children': ['23']}, {'id': '23', 'type': 'pair', 'children': ['24', '25']}; {'id': '24', 'type': 'string', 'children': [], 'value': "'sort'"}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '26', 'type': 'if_statement', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'author'}; {'id': '28', 'type': 'block', 'children': ['29']}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'assignment', 'children': ['31', '34']}, {'id': '31', 'type': 'subscript', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '33', 'type': 'string', 'children': [], 'value': "'dispatchauthor'"}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'author'}, {'id': '35', 'type': 'if_statement', 'children': ['36', '39', '63', '82']}; {'id': '36', 'type': 'boolean_operator', 'children': ['37', '38'], 'value': 'and'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'category'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'subcategory'}, {'id': '39', 'type': 'block', 'children': ['40', '57']}; {'id': '40', 'type': 'if_statement', 'children': ['41', '51']}, {'id': '41', 'type': 'parenthesized_expression', 'children': ['42'], 'value': '()'}; {'id': '42', 'type': 'boolean_operator', 'children': ['43', '46'], 'value': 'or'}, {'id': '43', 'type': 'comparison_operator', 'children': ['44', '45'], 'value': 'not'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'category'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'dispatch_categories'}; {'id': '46', 'type': 'comparison_operator', 'children': ['47', '48'], 'value': 'not'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'subcategory'}; {'id': '48', 'type': 'subscript', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'dispatch_categories'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'category'}, {'id': '51', 'type': 'block', 'children': ['52']}; {'id': '52', 'type': 'raise_statement', 'children': ['53']}, {'id': '53', 'type': 'call', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '55', 'type': 'argument_list', 'children': ['56']}; {'id': '56', 'type': 'string', 'children': [], 'value': "'Invalid category/subcategory'"}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '62']}, {'id': '59', 'type': 'subscript', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '61', 'type': 'string', 'children': [], 'value': "'dispatchcategory'"}; {'id': '62', 'type': 'string', 'children': [], 'value': "f'{category}:{subcategory}'"}, {'id': '63', 'type': 'elif_clause', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'category'}, {'id': '65', 'type': 'block', 'children': ['66', '76']}; {'id': '66', 'type': 'if_statement', 'children': ['67', '70']}, {'id': '67', 'type': 'comparison_operator', 'children': ['68', '69'], 'value': 'not'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'category'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'dispatch_categories'}; {'id': '70', 'type': 'block', 'children': ['71']}, {'id': '71', 'type': 'raise_statement', 'children': ['72']}; {'id': '72', 'type': 'call', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'string', 'children': [], 'value': "'Invalid category'"}; {'id': '76', 'type': 'expression_statement', 'children': ['77']}, {'id': '77', 'type': 'assignment', 'children': ['78', '81']}; {'id': '78', 'type': 'subscript', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '80', 'type': 'string', 'children': [], 'value': "'dispatchcategory'"}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'category'}; {'id': '82', 'type': 'else_clause', 'children': ['83']}, {'id': '83', 'type': 'block', 'children': ['84']}; {'id': '84', 'type': 'raise_statement', 'children': ['85']}, {'id': '85', 'type': 'call', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '87', 'type': 'argument_list', 'children': ['88']}; {'id': '88', 'type': 'string', 'children': [], 'value': "'Cannot request subcategory without category'"}, {'id': '89', 'type': 'decorated_definition', 'children': ['90', '97']}; {'id': '90', 'type': 'decorator', 'children': ['91']}, {'id': '91', 'type': 'call', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'api_query'}, {'id': '93', 'type': 'argument_list', 'children': ['94', '95']}; {'id': '94', 'type': 'string', 'children': [], 'value': "'dispatchlist'"}, {'id': '95', 'type': 'dictionary_splat', 'children': ['96']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '97', 'type': 'function_definition', 'children': ['98', '99', '102']}; {'id': '98', 'type': 'function_name', 'children': [], 'value': 'result'}, {'id': '99', 'type': 'parameters', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': '_'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'root'}; {'id': '102', 'type': 'block', 'children': ['103']}, {'id': '103', 'type': 'return_statement', 'children': ['104']}; {'id': '104', 'type': 'list_comprehension', 'children': ['105', '111']}, {'id': '105', 'type': 'call', 'children': ['106', '109']}; {'id': '106', 'type': 'attribute', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'DispatchThumbnail'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': '_from_elem'}, {'id': '109', 'type': 'argument_list', 'children': ['110']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'elem'}, {'id': '111', 'type': 'for_in_clause', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'elem'}, {'id': '113', 'type': 'call', 'children': ['114', '117']}; {'id': '114', 'type': 'attribute', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'root'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'find'}, {'id': '117', 'type': 'argument_list', 'children': ['118']}; {'id': '118', 'type': 'string', 'children': [], 'value': "'DISPATCHLIST'"}, {'id': '119', 'type': 'return_statement', 'children': ['120']}; {'id': '120', 'type': 'call', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '122', 'type': 'argument_list', 'children': ['123']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'self'} | def dispatchlist(self, *, author=None, category=None,
subcategory=None, sort='new'):
params = {'sort': sort}
if author:
params['dispatchauthor'] = author
if category and subcategory:
if (category not in dispatch_categories or
subcategory not in dispatch_categories[category]):
raise ValueError('Invalid category/subcategory')
params['dispatchcategory'] = f'{category}:{subcategory}'
elif category:
if category not in dispatch_categories:
raise ValueError('Invalid category')
params['dispatchcategory'] = category
else:
raise ValueError('Cannot request subcategory without category')
@api_query('dispatchlist', **params)
async def result(_, root):
return [
DispatchThumbnail._from_elem(elem)
for elem in root.find('DISPATCHLIST')
]
return result(self) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'have_cycle'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'typed_parameter', 'children': ['5', '6']}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'graph'}; {'id': '6', 'type': 'type', 'children': ['7']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '8', 'type': 'type', 'children': ['9']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'frozenset'}; {'id': '10', 'type': 'block', 'children': ['11', '17', '45', '52', '57', '103']}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'walked'}; {'id': '14', 'type': 'call', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '16', 'type': 'argument_list', 'children': []}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '20', 'type': 'call', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'frozenset'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}, {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'it'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'chain'}, {'id': '27', 'type': 'argument_list', 'children': ['28', '40']}; {'id': '28', 'type': 'call', 'children': ['29', '34']}, {'id': '29', 'type': 'attribute', 'children': ['30', '33']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'it'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'chain'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'from_iterable'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}, {'id': '35', 'type': 'call', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'graph'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '39', 'type': 'argument_list', 'children': []}; {'id': '40', 'type': 'call', 'children': ['41', '44']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'graph'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '44', 'type': 'argument_list', 'children': []}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'preds'}; {'id': '48', 'type': 'call', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'reversed_graph'}; {'id': '50', 'type': 'argument_list', 'children': ['51']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'graph'}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'assignment', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'last_walked_len'}, {'id': '55', 'type': 'unary_operator', 'children': ['56'], 'value': '-'}; {'id': '56', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '57', 'type': 'while_statement', 'children': ['58', '64']}; {'id': '58', 'type': 'comparison_operator', 'children': ['59', '60'], 'value': '!='}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'last_walked_len'}; {'id': '60', 'type': 'call', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'walked'}; {'id': '64', 'type': 'block', 'children': ['65', '72']}, {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'assignment', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'last_walked_len'}; {'id': '68', 'type': 'call', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '70', 'type': 'argument_list', 'children': ['71']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'walked'}; {'id': '72', 'type': 'for_statement', 'children': ['73', '74', '77']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '74', 'type': 'binary_operator', 'children': ['75', '76'], 'value': '-'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'walked'}, {'id': '77', 'type': 'block', 'children': ['78']}; {'id': '78', 'type': 'if_statement', 'children': ['79', '95']}, {'id': '79', 'type': 'comparison_operator', 'children': ['80', '94'], 'value': '=='}; {'id': '80', 'type': 'call', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '82', 'type': 'argument_list', 'children': ['83']}, {'id': '83', 'type': 'binary_operator', 'children': ['84', '93'], 'value': '-'}; {'id': '84', 'type': 'call', 'children': ['85', '88']}, {'id': '85', 'type': 'attribute', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'preds'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '88', 'type': 'argument_list', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '90', 'type': 'call', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '92', 'type': 'argument_list', 'children': []}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'walked'}; {'id': '94', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '95', 'type': 'block', 'children': ['96']}; {'id': '96', 'type': 'expression_statement', 'children': ['97']}, {'id': '97', 'type': 'call', 'children': ['98', '101']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'walked'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'add'}, {'id': '101', 'type': 'argument_list', 'children': ['102']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '103', 'type': 'return_statement', 'children': ['104']}; {'id': '104', 'type': 'call', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'frozenset'}; {'id': '106', 'type': 'argument_list', 'children': ['107']}, {'id': '107', 'type': 'binary_operator', 'children': ['108', '109'], 'value': '-'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'walked'} | def have_cycle(graph:dict) -> frozenset:
walked = set()
nodes = frozenset(it.chain(it.chain.from_iterable(graph.values()), graph.keys()))
preds = reversed_graph(graph)
last_walked_len = -1
while last_walked_len != len(walked):
last_walked_len = len(walked)
for node in nodes - walked:
if len(preds.get(node, set()) - walked) == 0:
walked.add(node)
return frozenset(nodes - walked) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'time_pipeline'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'iterable'}, {'id': '5', 'type': 'list_splat_pattern', 'children': ['6']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'steps'}, {'id': '7', 'type': 'block', 'children': ['8', '10', '56', '67', '71', '75', '197', '204', '211', '221']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'string', 'children': [], 'value': "'''\nThis times the steps in a pipeline. Give it an iterable to test against\nfollowed by the steps of the pipeline seperated in individual functions.\nExample Usage:\n```\n from random import choice, randint\n l = [randint(0,50) for i in range(100)]\n step1 = lambda iterable:(i for i in iterable if i%5==0)\n step2 = lambda iterable:(i for i in iterable if i%8==3)\n step3 = lambda iterable:sorted((1.0*i)/50 for i in iterable)\n step4 = lambda iterable:(float(float(float(float(i*3)))) for i in iterable)\n print('filter first')\n time_pipeline(l, step1, step2, step3, step4)\n print('process first')\n time_pipeline(l, step3, step4, step1, step2)\n print('filter, process, filter, process')\n time_pipeline(l, step1, step3, step2, step4)\n``` \nOutputs:\n filter first\n step 1 | 2.0427s | step1 = lambda iterable:(i for i in iterable if i%5==0)\n step 2 | 2.0510s | step2 = lambda iterable:(i for i in iterable if i%8==3)\n step 3 | 2.4839s | step3 = lambda iterable:sorted((1.0*i)/50 for i in iterable)\n step 4 | 2.8446s | step4 = lambda iterable:(float(float(float(float(i*3)))) for i in iterable)\n process first\n step 1 | 7.5291s | step3 = lambda iterable:sorted((1.0*i)/50 for i in iterable)\n step 2 | 20.6732s | step4 = lambda iterable:(float(float(float(float(i*3)))) for i in iterable)\n step 3 | 16.8470s | step1 = lambda iterable:(i for i in iterable if i%5==0)\n step 4 | 16.8269s | step2 = lambda iterable:(i for i in iterable if i%8==3)\n filter, process, filter, process\n step 1 | 2.0528s | step1 = lambda iterable:(i for i in iterable if i%5==0)\n step 2 | 3.3039s | step3 = lambda iterable:sorted((1.0*i)/50 for i in iterable)\n step 3 | 3.1385s | step2 = lambda iterable:(i for i in iterable if i%8==3)\n step 4 | 3.1489s | step4 = lambda iterable:(float(float(float(float(i*3)))) for i in iterable)\n'''"}; {'id': '10', 'type': 'if_statement', 'children': ['11', '15', '36']}, {'id': '11', 'type': 'call', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'callable'}, {'id': '13', 'type': 'argument_list', 'children': ['14']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'iterable'}, {'id': '15', 'type': 'block', 'children': ['16']}; {'id': '16', 'type': 'try_statement', 'children': ['17', '29']}, {'id': '17', 'type': 'block', 'children': ['18', '25']}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'call', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'iter'}, {'id': '21', 'type': 'argument_list', 'children': ['22']}; {'id': '22', 'type': 'call', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'iterable'}; {'id': '24', 'type': 'argument_list', 'children': []}, {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'callable_base'}; {'id': '28', 'type': 'True', 'children': []}, {'id': '29', 'type': 'except_clause', 'children': ['30']}; {'id': '30', 'type': 'block', 'children': ['31']}, {'id': '31', 'type': 'raise_statement', 'children': ['32']}; {'id': '32', 'type': 'call', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'TypeError'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}, {'id': '35', 'type': 'string', 'children': [], 'value': "'time_pipeline needs the first argument to be an iterable or a function that produces an iterable.'"}; {'id': '36', 'type': 'else_clause', 'children': ['37']}, {'id': '37', 'type': 'block', 'children': ['38']}; {'id': '38', 'type': 'try_statement', 'children': ['39', '49']}, {'id': '39', 'type': 'block', 'children': ['40', '45']}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'call', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'iter'}, {'id': '43', 'type': 'argument_list', 'children': ['44']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'iterable'}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'callable_base'}; {'id': '48', 'type': 'False', 'children': []}, {'id': '49', 'type': 'except_clause', 'children': ['50']}; {'id': '50', 'type': 'block', 'children': ['51']}, {'id': '51', 'type': 'raise_statement', 'children': ['52']}; {'id': '52', 'type': 'call', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'TypeError'}; {'id': '54', 'type': 'argument_list', 'children': ['55']}, {'id': '55', 'type': 'string', 'children': [], 'value': "'time_pipeline needs the first argument to be an iterable or a function that produces an iterable.'"}; {'id': '56', 'type': 'if_statement', 'children': ['57', '59']}, {'id': '57', 'type': 'not_operator', 'children': ['58']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'callable_base'}, {'id': '59', 'type': 'block', 'children': ['60']}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'assignment', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'iterable'}, {'id': '63', 'type': 'call', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'tuple'}, {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'iterable'}, {'id': '67', 'type': 'expression_statement', 'children': ['68']}; {'id': '68', 'type': 'assignment', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'durations'}; {'id': '70', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '71', 'type': 'expression_statement', 'children': ['72']}; {'id': '72', 'type': 'assignment', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'results'}; {'id': '74', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '75', 'type': 'for_statement', 'children': ['76', '79', '83']}; {'id': '76', 'type': 'pattern_list', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': '_'}, {'id': '79', 'type': 'call', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'enumerate'}, {'id': '81', 'type': 'argument_list', 'children': ['82']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'steps'}, {'id': '83', 'type': 'block', 'children': ['84', '94', '98', '156', '163']}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}, {'id': '85', 'type': 'assignment', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'current_tasks'}, {'id': '87', 'type': 'subscript', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'steps'}, {'id': '89', 'type': 'slice', 'children': ['90', '91']}; {'id': '90', 'type': 'colon', 'children': []}, {'id': '91', 'type': 'binary_operator', 'children': ['92', '93'], 'value': '+'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '93', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '94', 'type': 'expression_statement', 'children': ['95']}, {'id': '95', 'type': 'assignment', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'duration'}, {'id': '97', 'type': 'float', 'children': [], 'value': '0.0'}; {'id': '98', 'type': 'for_statement', 'children': ['99', '100', '104']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 't'}; {'id': '100', 'type': 'call', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '102', 'type': 'argument_list', 'children': ['103']}, {'id': '103', 'type': 'integer', 'children': [], 'value': '100000'}; {'id': '104', 'type': 'block', 'children': ['105', '120', '126', '137', '148']}, {'id': '105', 'type': 'expression_statement', 'children': ['106']}; {'id': '106', 'type': 'assignment', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'test_generator'}; {'id': '108', 'type': 'conditional_expression', 'children': ['109', '115', '116'], 'value': 'if'}, {'id': '109', 'type': 'call', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'iter'}, {'id': '111', 'type': 'argument_list', 'children': ['112']}; {'id': '112', 'type': 'call', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'iterable'}; {'id': '114', 'type': 'argument_list', 'children': []}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'callable_base'}; {'id': '116', 'type': 'call', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'iter'}; {'id': '118', 'type': 'argument_list', 'children': ['119']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'iterable'}; {'id': '120', 'type': 'expression_statement', 'children': ['121']}, {'id': '121', 'type': 'assignment', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'start'}, {'id': '123', 'type': 'call', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'ts'}, {'id': '125', 'type': 'argument_list', 'children': []}; {'id': '126', 'type': 'for_statement', 'children': ['127', '128', '129']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'task'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'current_tasks'}, {'id': '129', 'type': 'block', 'children': ['130']}; {'id': '130', 'type': 'expression_statement', 'children': ['131']}, {'id': '131', 'type': 'assignment', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'test_generator'}, {'id': '133', 'type': 'call', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'task'}, {'id': '135', 'type': 'argument_list', 'children': ['136']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'test_generator'}, {'id': '137', 'type': 'for_statement', 'children': ['138', '139', '146']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '139', 'type': 'call', 'children': ['140', '144']}; {'id': '140', 'type': 'subscript', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'current_tasks'}; {'id': '142', 'type': 'unary_operator', 'children': ['143'], 'value': '-'}, {'id': '143', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '144', 'type': 'argument_list', 'children': ['145']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'test_generator'}; {'id': '146', 'type': 'block', 'children': ['147']}, {'id': '147', 'type': 'pass_statement', 'children': []}; {'id': '148', 'type': 'expression_statement', 'children': ['149']}, {'id': '149', 'type': 'augmented_assignment', 'children': ['150', '151'], 'value': '+='}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'duration'}, {'id': '151', 'type': 'binary_operator', 'children': ['152', '155'], 'value': '-'}; {'id': '152', 'type': 'call', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'ts'}; {'id': '154', 'type': 'argument_list', 'children': []}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '156', 'type': 'expression_statement', 'children': ['157']}, {'id': '157', 'type': 'call', 'children': ['158', '161']}; {'id': '158', 'type': 'attribute', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'durations'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '161', 'type': 'argument_list', 'children': ['162']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'duration'}, {'id': '163', 'type': 'if_statement', 'children': ['164', '170', '180']}; {'id': '164', 'type': 'comparison_operator', 'children': ['165', '169'], 'value': '=='}, {'id': '165', 'type': 'call', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '167', 'type': 'argument_list', 'children': ['168']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'durations'}, {'id': '169', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '170', 'type': 'block', 'children': ['171']}, {'id': '171', 'type': 'expression_statement', 'children': ['172']}; {'id': '172', 'type': 'call', 'children': ['173', '176']}, {'id': '173', 'type': 'attribute', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'results'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '176', 'type': 'argument_list', 'children': ['177']}, {'id': '177', 'type': 'subscript', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'durations'}, {'id': '179', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '180', 'type': 'else_clause', 'children': ['181']}, {'id': '181', 'type': 'block', 'children': ['182']}; {'id': '182', 'type': 'expression_statement', 'children': ['183']}, {'id': '183', 'type': 'call', 'children': ['184', '187']}; {'id': '184', 'type': 'attribute', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'results'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '187', 'type': 'argument_list', 'children': ['188']}; {'id': '188', 'type': 'binary_operator', 'children': ['189', '193'], 'value': '-'}, {'id': '189', 'type': 'subscript', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'durations'}, {'id': '191', 'type': 'unary_operator', 'children': ['192'], 'value': '-'}; {'id': '192', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '193', 'type': 'subscript', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'durations'}, {'id': '195', 'type': 'unary_operator', 'children': ['196'], 'value': '-'}; {'id': '196', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '197', 'type': 'assert_statement', 'children': ['198']}; {'id': '198', 'type': 'comparison_operator', 'children': ['199', '203'], 'value': '>'}, {'id': '199', 'type': 'call', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'sum'}, {'id': '201', 'type': 'argument_list', 'children': ['202']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'results'}, {'id': '203', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '204', 'type': 'expression_statement', 'children': ['205']}, {'id': '205', 'type': 'assignment', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'resultsum'}, {'id': '207', 'type': 'call', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'sum'}, {'id': '209', 'type': 'argument_list', 'children': ['210']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'results'}, {'id': '211', 'type': 'expression_statement', 'children': ['212']}; {'id': '212', 'type': 'assignment', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'ratios'}; {'id': '214', 'type': 'list_comprehension', 'children': ['215', '218']}, {'id': '215', 'type': 'binary_operator', 'children': ['216', '217'], 'value': '/'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'resultsum'}; {'id': '218', 'type': 'for_in_clause', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'results'}, {'id': '221', 'type': 'for_statement', 'children': ['222', '223', '230']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '223', 'type': 'call', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '225', 'type': 'argument_list', 'children': ['226']}; {'id': '226', 'type': 'call', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '228', 'type': 'argument_list', 'children': ['229']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'ratios'}; {'id': '230', 'type': 'block', 'children': ['231', '267']}, {'id': '231', 'type': 'try_statement', 'children': ['232', '252']}; {'id': '232', 'type': 'block', 'children': ['233']}, {'id': '233', 'type': 'expression_statement', 'children': ['234']}; {'id': '234', 'type': 'assignment', 'children': ['235', '236']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '236', 'type': 'call', 'children': ['237', '251']}, {'id': '237', 'type': 'attribute', 'children': ['238', '250']}; {'id': '238', 'type': 'subscript', 'children': ['239', '249']}, {'id': '239', 'type': 'call', 'children': ['240', '248']}; {'id': '240', 'type': 'attribute', 'children': ['241', '247']}, {'id': '241', 'type': 'call', 'children': ['242', '243']}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'getsource'}, {'id': '243', 'type': 'argument_list', 'children': ['244']}; {'id': '244', 'type': 'subscript', 'children': ['245', '246']}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'steps'}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'splitlines'}; {'id': '248', 'type': 'argument_list', 'children': []}, {'id': '249', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'strip'}, {'id': '251', 'type': 'argument_list', 'children': []}; {'id': '252', 'type': 'except_clause', 'children': ['253']}, {'id': '253', 'type': 'block', 'children': ['254']}; {'id': '254', 'type': 'expression_statement', 'children': ['255']}, {'id': '255', 'type': 'assignment', 'children': ['256', '257']}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '257', 'type': 'call', 'children': ['258', '266']}; {'id': '258', 'type': 'attribute', 'children': ['259', '265']}, {'id': '259', 'type': 'call', 'children': ['260', '261']}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'repr'}, {'id': '261', 'type': 'argument_list', 'children': ['262']}; {'id': '262', 'type': 'subscript', 'children': ['263', '264']}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'steps'}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'strip'}; {'id': '266', 'type': 'argument_list', 'children': []}, {'id': '267', 'type': 'expression_statement', 'children': ['268']}; {'id': '268', 'type': 'call', 'children': ['269', '270']}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '270', 'type': 'argument_list', 'children': ['271']}, {'id': '271', 'type': 'call', 'children': ['272', '275']}; {'id': '272', 'type': 'attribute', 'children': ['273', '274']}, {'id': '273', 'type': 'string', 'children': [], 'value': "'step {} | {:2.4f}s | {}'"}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '275', 'type': 'argument_list', 'children': ['276', '279', '282']}; {'id': '276', 'type': 'binary_operator', 'children': ['277', '278'], 'value': '+'}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '278', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '279', 'type': 'subscript', 'children': ['280', '281']}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'durations'}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'i'} | def time_pipeline(iterable, *steps):
'''
This times the steps in a pipeline. Give it an iterable to test against
followed by the steps of the pipeline seperated in individual functions.
Example Usage:
```
from random import choice, randint
l = [randint(0,50) for i in range(100)]
step1 = lambda iterable:(i for i in iterable if i%5==0)
step2 = lambda iterable:(i for i in iterable if i%8==3)
step3 = lambda iterable:sorted((1.0*i)/50 for i in iterable)
step4 = lambda iterable:(float(float(float(float(i*3)))) for i in iterable)
print('filter first')
time_pipeline(l, step1, step2, step3, step4)
print('process first')
time_pipeline(l, step3, step4, step1, step2)
print('filter, process, filter, process')
time_pipeline(l, step1, step3, step2, step4)
```
Outputs:
filter first
step 1 | 2.0427s | step1 = lambda iterable:(i for i in iterable if i%5==0)
step 2 | 2.0510s | step2 = lambda iterable:(i for i in iterable if i%8==3)
step 3 | 2.4839s | step3 = lambda iterable:sorted((1.0*i)/50 for i in iterable)
step 4 | 2.8446s | step4 = lambda iterable:(float(float(float(float(i*3)))) for i in iterable)
process first
step 1 | 7.5291s | step3 = lambda iterable:sorted((1.0*i)/50 for i in iterable)
step 2 | 20.6732s | step4 = lambda iterable:(float(float(float(float(i*3)))) for i in iterable)
step 3 | 16.8470s | step1 = lambda iterable:(i for i in iterable if i%5==0)
step 4 | 16.8269s | step2 = lambda iterable:(i for i in iterable if i%8==3)
filter, process, filter, process
step 1 | 2.0528s | step1 = lambda iterable:(i for i in iterable if i%5==0)
step 2 | 3.3039s | step3 = lambda iterable:sorted((1.0*i)/50 for i in iterable)
step 3 | 3.1385s | step2 = lambda iterable:(i for i in iterable if i%8==3)
step 4 | 3.1489s | step4 = lambda iterable:(float(float(float(float(i*3)))) for i in iterable)
'''
if callable(iterable):
try:
iter(iterable())
callable_base = True
except:
raise TypeError('time_pipeline needs the first argument to be an iterable or a function that produces an iterable.')
else:
try:
iter(iterable)
callable_base = False
except:
raise TypeError('time_pipeline needs the first argument to be an iterable or a function that produces an iterable.')
if not callable_base:
iterable = tuple(iterable)
durations = []
results = []
for i,_ in enumerate(steps):
current_tasks = steps[:i+1]
duration = 0.0
for t in range(100000):
test_generator = iter(iterable()) if callable_base else iter(iterable)
start = ts()
for task in current_tasks:
test_generator = task(test_generator)
for i in current_tasks[-1](test_generator):
pass
duration += ts() - start
durations.append(duration)
if len(durations) == 1:
results.append(durations[0])
else:
results.append(durations[-1]-durations[-2])
assert sum(results) > 0
resultsum = sum(results)
ratios = [i/resultsum for i in results]
for i in range(len(ratios)):
try:
s = getsource(steps[i]).splitlines()[0].strip()
except:
s = repr(steps[i]).strip()
print('step {} | {:2.4f}s | {}'.format(i+1, durations[i], s)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_matches'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'matches'}, {'id': '5', 'type': 'block', 'children': ['6', '8', '30', '54']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'string', 'children': [], 'value': "'''Sorts a ``list`` of matches best to worst'''"}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'multipliers'}, {'id': '11', 'type': 'dictionary', 'children': ['12', '17', '22', '27']}; {'id': '12', 'type': 'pair', 'children': ['13', '14']}, {'id': '13', 'type': 'string', 'children': [], 'value': "'exact'"}; {'id': '14', 'type': 'binary_operator', 'children': ['15', '16'], 'value': '**'}, {'id': '15', 'type': 'integer', 'children': [], 'value': '10'}; {'id': '16', 'type': 'integer', 'children': [], 'value': '5'}, {'id': '17', 'type': 'pair', 'children': ['18', '19']}; {'id': '18', 'type': 'string', 'children': [], 'value': "'fname'"}, {'id': '19', 'type': 'binary_operator', 'children': ['20', '21'], 'value': '**'}; {'id': '20', 'type': 'integer', 'children': [], 'value': '10'}, {'id': '21', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '22', 'type': 'pair', 'children': ['23', '24']}, {'id': '23', 'type': 'string', 'children': [], 'value': "'fuzzy'"}; {'id': '24', 'type': 'binary_operator', 'children': ['25', '26'], 'value': '**'}, {'id': '25', 'type': 'integer', 'children': [], 'value': '10'}; {'id': '26', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '27', 'type': 'pair', 'children': ['28', '29']}; {'id': '28', 'type': 'string', 'children': [], 'value': "'fuzzy_fragment'"}, {'id': '29', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'assignment', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'matches'}, {'id': '33', 'type': 'list_comprehension', 'children': ['34', '51']}; {'id': '34', 'type': 'tuple', 'children': ['35', '50']}, {'id': '35', 'type': 'binary_operator', 'children': ['36', '41'], 'value': '*'}; {'id': '36', 'type': 'subscript', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'multipliers'}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '41', 'type': 'parenthesized_expression', 'children': ['42'], 'value': '()'}; {'id': '42', 'type': 'conditional_expression', 'children': ['43', '46', '49'], 'value': 'if'}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'amount'}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'amount'}, {'id': '49', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '51', 'type': 'for_in_clause', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'matches'}; {'id': '54', 'type': 'return_statement', 'children': ['55']}, {'id': '55', 'type': 'list_comprehension', 'children': ['56', '59']}; {'id': '56', 'type': 'subscript', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '58', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '59', 'type': 'for_in_clause', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '61', 'type': 'call', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '63', 'type': 'argument_list', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'matches'}, {'id': '65', 'type': 'keyword_argument', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'reverse'}, {'id': '67', 'type': 'True', 'children': []} | def sort_matches(matches):
'''Sorts a ``list`` of matches best to worst'''
multipliers = {'exact':10**5,'fname':10**4,'fuzzy':10**2,'fuzzy_fragment':1}
matches = [(multipliers[x.type]*(x.amount if x.amount else 1),x) for x in matches]
return [x[1] for x in sorted(matches,reverse=True)] |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_get_sorted_iterator'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'iterator'}; {'id': '6', 'type': 'block', 'children': ['7', '17', '40', '43', '51', '66']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'lines'}; {'id': '10', 'type': 'call', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '12', 'type': 'argument_list', 'children': ['13']}, {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'next'}, {'id': '15', 'type': 'argument_list', 'children': ['16']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'iterator'}, {'id': '17', 'type': 'if_statement', 'children': ['18', '26']}; {'id': '18', 'type': 'comparison_operator', 'children': ['19', '23'], 'value': '<'}, {'id': '19', 'type': 'call', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '21', 'type': 'argument_list', 'children': ['22']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'lines'}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'max_lines'}; {'id': '26', 'type': 'block', 'children': ['27']}, {'id': '27', 'type': 'return_statement', 'children': ['28']}; {'id': '28', 'type': 'call', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'iter'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}, {'id': '31', 'type': 'call', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '33', 'type': 'argument_list', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'lines'}, {'id': '35', 'type': 'keyword_argument', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '40', 'type': 'import_statement', 'children': ['41']}, {'id': '41', 'type': 'dotted_name', 'children': ['42']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'tempfile'}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'tmp_dir'}; {'id': '46', 'type': 'call', 'children': ['47', '50']}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'tempfile'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'mkdtemp'}; {'id': '50', 'type': 'argument_list', 'children': []}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'fnames'}; {'id': '54', 'type': 'call', 'children': ['55', '58']}, {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': '_split'}; {'id': '58', 'type': 'argument_list', 'children': ['59', '65']}, {'id': '59', 'type': 'call', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'chain'}, {'id': '61', 'type': 'argument_list', 'children': ['62', '64']}; {'id': '62', 'type': 'list', 'children': ['63'], 'value': '[lines]'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'lines'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'iterator'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'tmp_dir'}; {'id': '66', 'type': 'return_statement', 'children': ['67']}, {'id': '67', 'type': 'call', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'SortedIteratorMerger'}, {'id': '69', 'type': 'argument_list', 'children': ['70', '82']}; {'id': '70', 'type': 'list_comprehension', 'children': ['71', '79']}, {'id': '71', 'type': 'call', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'unpickle_iter'}, {'id': '73', 'type': 'argument_list', 'children': ['74']}; {'id': '74', 'type': 'call', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '76', 'type': 'argument_list', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'fname'}; {'id': '78', 'type': 'string', 'children': [], 'value': "'rb'"}, {'id': '79', 'type': 'for_in_clause', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'fname'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'fnames'}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'self'} | def _get_sorted_iterator(self, iterator):
lines = list(next(iterator))
if len(lines) < self.max_lines:
return iter(sorted(lines, key=self.key))
import tempfile
tmp_dir = tempfile.mkdtemp()
fnames = self._split(chain([lines], iterator), tmp_dir)
return SortedIteratorMerger([unpickle_iter(open(fname, 'rb')) for fname in fnames], self.key) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_split'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'iterator'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'tmp_dir'}, {'id': '7', 'type': 'block', 'children': ['8', '12', '75']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'fnames'}, {'id': '11', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '12', 'type': 'for_statement', 'children': ['13', '16', '20']}, {'id': '13', 'type': 'pattern_list', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'lines'}; {'id': '16', 'type': 'call', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '18', 'type': 'argument_list', 'children': ['19']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'iterator'}; {'id': '20', 'type': 'block', 'children': ['21', '28', '49', '57', '64']}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'lines'}; {'id': '24', 'type': 'call', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'lines'}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'assignment', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'out_fname'}, {'id': '31', 'type': 'call', 'children': ['32', '37']}; {'id': '32', 'type': 'attribute', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '37', 'type': 'argument_list', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'tmp_dir'}, {'id': '39', 'type': 'call', 'children': ['40', '45']}; {'id': '40', 'type': 'attribute', 'children': ['41', '44']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'TMP_FNAME'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'binary_operator', 'children': ['47', '48'], 'value': '+'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '48', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'call', 'children': ['51', '54']}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': '_write'}; {'id': '54', 'type': 'argument_list', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'lines'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'out_fname'}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'call', 'children': ['59', '62']}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'fnames'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'out_fname'}; {'id': '64', 'type': 'if_statement', 'children': ['65', '73']}, {'id': '65', 'type': 'comparison_operator', 'children': ['66', '70'], 'value': '<'}; {'id': '66', 'type': 'call', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '68', 'type': 'argument_list', 'children': ['69']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'lines'}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'max_lines'}, {'id': '73', 'type': 'block', 'children': ['74']}; {'id': '74', 'type': 'break_statement', 'children': []}, {'id': '75', 'type': 'return_statement', 'children': ['76']} | def _split(self, iterator, tmp_dir):
fnames = []
for i, lines in enumerate(iterator):
lines = list(lines)
out_fname = os.path.join(tmp_dir, self.TMP_FNAME.format(i + 1))
self._write(lines, out_fname)
fnames.append(out_fname)
if len(lines) < self.max_lines:
break
return fnames |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_write'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'lines'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'fname'}, {'id': '7', 'type': 'block', 'children': ['8']}; {'id': '8', 'type': 'with_statement', 'children': ['9', '19']}, {'id': '9', 'type': 'with_clause', 'children': ['10']}; {'id': '10', 'type': 'with_item', 'children': ['11']}, {'id': '11', 'type': 'as_pattern', 'children': ['12', '17']}; {'id': '12', 'type': 'call', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '14', 'type': 'argument_list', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'fname'}; {'id': '16', 'type': 'string', 'children': [], 'value': "'wb'"}, {'id': '17', 'type': 'as_pattern_target', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'out_fhndl'}, {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'for_statement', 'children': ['21', '22', '31']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '22', 'type': 'call', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '24', 'type': 'argument_list', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'lines'}; {'id': '26', 'type': 'keyword_argument', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '31', 'type': 'block', 'children': ['32']}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'call', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'pickle'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'dump'}, {'id': '37', 'type': 'argument_list', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'out_fhndl'} | def _write(self, lines, fname):
with open(fname, 'wb') as out_fhndl:
for line in sorted(lines, key=self.key):
pickle.dump(line, out_fhndl) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'add'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'interval'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'offset'}, {'id': '7', 'type': 'block', 'children': ['8', '19']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '13']}; {'id': '10', 'type': 'pattern_list', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'stop'}, {'id': '13', 'type': 'call', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'get_start_stop'}, {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'interval'}, {'id': '19', 'type': 'if_statement', 'children': ['20', '28', '77']}; {'id': '20', 'type': 'comparison_operator', 'children': ['21', '27'], 'value': '>'}, {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'starts'}, {'id': '27', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '28', 'type': 'block', 'children': ['29', '55', '66']}, {'id': '29', 'type': 'if_statement', 'children': ['30', '49']}; {'id': '30', 'type': 'boolean_operator', 'children': ['31', '39'], 'value': 'or'}, {'id': '31', 'type': 'comparison_operator', 'children': ['32', '33'], 'value': '<'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'start'}, {'id': '33', 'type': 'subscript', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'starts'}, {'id': '37', 'type': 'unary_operator', 'children': ['38'], 'value': '-'}; {'id': '38', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '39', 'type': 'comparison_operator', 'children': ['40', '41'], 'value': '<='}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'offset'}, {'id': '41', 'type': 'subscript', 'children': ['42', '48']}; {'id': '42', 'type': 'subscript', 'children': ['43', '46']}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'offsets'}; {'id': '46', 'type': 'unary_operator', 'children': ['47'], 'value': '-'}, {'id': '47', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '48', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '49', 'type': 'block', 'children': ['50']}; {'id': '50', 'type': 'raise_statement', 'children': ['51']}, {'id': '51', 'type': 'call', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'string', 'children': [], 'value': "'intervals and offsets must be added in-order'"}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'assignment', 'children': ['57', '65']}, {'id': '57', 'type': 'subscript', 'children': ['58', '64']}; {'id': '58', 'type': 'subscript', 'children': ['59', '62']}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'offsets'}; {'id': '62', 'type': 'unary_operator', 'children': ['63'], 'value': '-'}, {'id': '63', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '64', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'offset'}; {'id': '66', 'type': 'expression_statement', 'children': ['67']}, {'id': '67', 'type': 'augmented_assignment', 'children': ['68', '76'], 'value': '+='}; {'id': '68', 'type': 'subscript', 'children': ['69', '75']}, {'id': '69', 'type': 'subscript', 'children': ['70', '73']}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'offsets'}, {'id': '73', 'type': 'unary_operator', 'children': ['74'], 'value': '-'}; {'id': '74', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '75', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '76', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '77', 'type': 'else_clause', 'children': ['78']}; {'id': '78', 'type': 'block', 'children': ['79', '88', '97']}, {'id': '79', 'type': 'expression_statement', 'children': ['80']}; {'id': '80', 'type': 'call', 'children': ['81', '86']}, {'id': '81', 'type': 'attribute', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'starts'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '86', 'type': 'argument_list', 'children': ['87']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '88', 'type': 'expression_statement', 'children': ['89']}, {'id': '89', 'type': 'call', 'children': ['90', '95']}; {'id': '90', 'type': 'attribute', 'children': ['91', '94']}, {'id': '91', 'type': 'attribute', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'stops'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'stop'}, {'id': '97', 'type': 'expression_statement', 'children': ['98']}; {'id': '98', 'type': 'call', 'children': ['99', '104']}, {'id': '99', 'type': 'attribute', 'children': ['100', '103']}; {'id': '100', 'type': 'attribute', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'offsets'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '104', 'type': 'argument_list', 'children': ['105']}, {'id': '105', 'type': 'list', 'children': ['106', '107', '108'], 'value': '[offset, offset, 1]'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'offset'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'offset'} | def add(self, interval, offset):
start, stop = self.get_start_stop(interval)
if len(self.starts) > 0:
if start < self.starts[-1] or offset <= self.offsets[-1][1]:
raise ValueError('intervals and offsets must be added in-order')
self.offsets[-1][1] = offset
self.offsets[-1][2] += 1
else:
self.starts.append(start)
self.stops.append(stop)
self.offsets.append([offset, offset, 1]) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_collection_documents_generator'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'client'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'database_name'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'collection_name'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'spec'}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'latest_n'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'sort_key'}; {'id': '10', 'type': 'block', 'children': ['11', '17', '23', '30', '108']}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'mongo_database'}; {'id': '14', 'type': 'subscript', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'client'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'database_name'}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'collection'}; {'id': '20', 'type': 'subscript', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'mongo_database'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'collection_name'}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'call', 'children': ['25', '28']}, {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'collection'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'create_index'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'sort_key'}; {'id': '30', 'type': 'if_statement', 'children': ['31', '34', '87']}, {'id': '31', 'type': 'comparison_operator', 'children': ['32', '33'], 'value': 'is'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'latest_n'}, {'id': '33', 'type': 'None', 'children': []}; {'id': '34', 'type': 'block', 'children': ['35', '45', '60', '79']}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'skip_n'}; {'id': '38', 'type': 'binary_operator', 'children': ['39', '44'], 'value': '-'}, {'id': '39', 'type': 'call', 'children': ['40', '43']}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'collection'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'count'}, {'id': '43', 'type': 'argument_list', 'children': []}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'latest_n'}, {'id': '45', 'type': 'if_statement', 'children': ['46', '55']}; {'id': '46', 'type': 'comparison_operator', 'children': ['47', '54'], 'value': '<'}, {'id': '47', 'type': 'binary_operator', 'children': ['48', '53'], 'value': '-'}; {'id': '48', 'type': 'call', 'children': ['49', '52']}, {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'collection'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '52', 'type': 'argument_list', 'children': []}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'latest_n'}; {'id': '54', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '55', 'type': 'block', 'children': ['56']}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}, {'id': '57', 'type': 'assignment', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'skip_n'}, {'id': '59', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'assignment', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'cursor'}, {'id': '63', 'type': 'call', 'children': ['64', '74']}; {'id': '64', 'type': 'attribute', 'children': ['65', '73']}, {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'collection'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'find'}, {'id': '69', 'type': 'argument_list', 'children': ['70']}; {'id': '70', 'type': 'keyword_argument', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'spec'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'list', 'children': ['76'], 'value': '[(sort_key, ASCENDING), ]'}; {'id': '76', 'type': 'tuple', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'sort_key'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'ASCENDING'}, {'id': '79', 'type': 'expression_statement', 'children': ['80']}; {'id': '80', 'type': 'assignment', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'cursor'}; {'id': '82', 'type': 'subscript', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'cursor'}; {'id': '84', 'type': 'slice', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'skip_n'}; {'id': '86', 'type': 'colon', 'children': []}, {'id': '87', 'type': 'else_clause', 'children': ['88']}; {'id': '88', 'type': 'block', 'children': ['89']}, {'id': '89', 'type': 'expression_statement', 'children': ['90']}; {'id': '90', 'type': 'assignment', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'cursor'}; {'id': '92', 'type': 'call', 'children': ['93', '103']}, {'id': '93', 'type': 'attribute', 'children': ['94', '102']}; {'id': '94', 'type': 'call', 'children': ['95', '98']}, {'id': '95', 'type': 'attribute', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'collection'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'find'}; {'id': '98', 'type': 'argument_list', 'children': ['99']}, {'id': '99', 'type': 'keyword_argument', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'filter'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'spec'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '103', 'type': 'argument_list', 'children': ['104']}; {'id': '104', 'type': 'list', 'children': ['105'], 'value': '[(sort_key, ASCENDING), ]'}, {'id': '105', 'type': 'tuple', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'sort_key'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'ASCENDING'}; {'id': '108', 'type': 'for_statement', 'children': ['109', '110', '111']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'document'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'cursor'}, {'id': '111', 'type': 'block', 'children': ['112']}; {'id': '112', 'type': 'expression_statement', 'children': ['113']}, {'id': '113', 'type': 'yield', 'children': ['114']} | def get_collection_documents_generator(client, database_name, collection_name, spec, latest_n, sort_key):
mongo_database = client[database_name]
collection = mongo_database[collection_name]
collection.create_index(sort_key)
if latest_n is not None:
skip_n = collection.count() - latest_n
if collection.count() - latest_n < 0:
skip_n = 0
cursor = collection.find(filter=spec).sort([(sort_key, ASCENDING), ])
cursor = cursor[skip_n:]
else:
cursor = collection.find(filter=spec).sort([(sort_key, ASCENDING), ])
for document in cursor:
yield document |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'save'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'list_splat_pattern', 'children': ['6']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '7', 'type': 'dictionary_splat_pattern', 'children': ['8']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '9', 'type': 'block', 'children': ['10', '27', '44']}; {'id': '10', 'type': 'if_statement', 'children': ['11', '15']}, {'id': '11', 'type': 'not_operator', 'children': ['12']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'target'}, {'id': '15', 'type': 'block', 'children': ['16']}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'assignment', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'target'}, {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'content_object'}, {'id': '27', 'type': 'if_statement', 'children': ['28', '32']}; {'id': '28', 'type': 'not_operator', 'children': ['29']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'actor_name'}; {'id': '32', 'type': 'block', 'children': ['33']}, {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '38']}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'actor_name'}; {'id': '38', 'type': 'call', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '40', 'type': 'argument_list', 'children': ['41']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'actor'}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'call', 'children': ['46', '53']}; {'id': '46', 'type': 'attribute', 'children': ['47', '52']}, {'id': '47', 'type': 'call', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'super'}, {'id': '49', 'type': 'argument_list', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'Activity'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'save'}, {'id': '53', 'type': 'argument_list', 'children': []} | def save(self, *args, **kwargs):
if not self.target:
self.target = str(self.content_object)
if not self.actor_name:
self.actor_name = str(self.actor)
super(Activity, self).save() |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_sort_modules'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'mods'}, {'id': '5', 'type': 'block', 'children': ['6', '56']}; {'id': '6', 'type': 'function_definition', 'children': ['7', '8', '11']}, {'id': '7', 'type': 'function_name', 'children': [], 'value': 'compare'}; {'id': '8', 'type': 'parameters', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '11', 'type': 'block', 'children': ['12', '18', '24', '31', '40', '54']}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '15', 'type': 'subscript', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '17', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '21', 'type': 'subscript', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '23', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '24', 'type': 'if_statement', 'children': ['25', '28']}, {'id': '25', 'type': 'comparison_operator', 'children': ['26', '27'], 'value': '=='}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '28', 'type': 'block', 'children': ['29']}, {'id': '29', 'type': 'return_statement', 'children': ['30']}; {'id': '30', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '31', 'type': 'if_statement', 'children': ['32', '37']}; {'id': '32', 'type': 'comparison_operator', 'children': ['33', '36'], 'value': '=='}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'stem'}; {'id': '36', 'type': 'string', 'children': [], 'value': '"__init__.py"'}, {'id': '37', 'type': 'block', 'children': ['38']}; {'id': '38', 'type': 'return_statement', 'children': ['39']}, {'id': '39', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '40', 'type': 'if_statement', 'children': ['41', '50']}, {'id': '41', 'type': 'boolean_operator', 'children': ['42', '47'], 'value': 'or'}; {'id': '42', 'type': 'comparison_operator', 'children': ['43', '46'], 'value': '=='}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'stem'}; {'id': '46', 'type': 'string', 'children': [], 'value': '"__init__.py"'}, {'id': '47', 'type': 'comparison_operator', 'children': ['48', '49'], 'value': '<'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '50', 'type': 'block', 'children': ['51']}, {'id': '51', 'type': 'return_statement', 'children': ['52']}; {'id': '52', 'type': 'unary_operator', 'children': ['53'], 'value': '-'}, {'id': '53', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '54', 'type': 'return_statement', 'children': ['55']}, {'id': '55', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '56', 'type': 'return_statement', 'children': ['57']}, {'id': '57', 'type': 'call', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '59', 'type': 'argument_list', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'mods'}, {'id': '61', 'type': 'keyword_argument', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '63', 'type': 'call', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'cmp_to_key'}, {'id': '65', 'type': 'argument_list', 'children': ['66']} | def _sort_modules(mods):
def compare(x, y):
x = x[1]
y = y[1]
if x == y:
return 0
if y.stem == "__init__.py":
return 1
if x.stem == "__init__.py" or x < y:
return -1
return 1
return sorted(mods, key=cmp_to_key(compare)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_sort_results'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'results'}; {'id': '6', 'type': 'block', 'children': ['7', '11', '15', '79', '83', '109']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'parents'}; {'id': '10', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'groups'}; {'id': '14', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '15', 'type': 'for_statement', 'children': ['16', '17', '18']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'results'}; {'id': '18', 'type': 'block', 'children': ['19']}, {'id': '19', 'type': 'if_statement', 'children': ['20', '30', '61']}; {'id': '20', 'type': 'not_operator', 'children': ['21']}, {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': '_in_list'}, {'id': '25', 'type': 'argument_list', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'parents'}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'parent'}; {'id': '30', 'type': 'block', 'children': ['31', '40', '47']}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'call', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'parents'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'parent'}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'groups'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'call', 'children': ['49', '59']}, {'id': '49', 'type': 'attribute', 'children': ['50', '58']}; {'id': '50', 'type': 'subscript', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'groups'}; {'id': '52', 'type': 'binary_operator', 'children': ['53', '57'], 'value': '-'}, {'id': '53', 'type': 'call', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '55', 'type': 'argument_list', 'children': ['56']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'groups'}, {'id': '57', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '59', 'type': 'argument_list', 'children': ['60']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '61', 'type': 'else_clause', 'children': ['62']}; {'id': '62', 'type': 'block', 'children': ['63']}, {'id': '63', 'type': 'expression_statement', 'children': ['64']}; {'id': '64', 'type': 'call', 'children': ['65', '77']}, {'id': '65', 'type': 'attribute', 'children': ['66', '76']}; {'id': '66', 'type': 'subscript', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'groups'}; {'id': '68', 'type': 'call', 'children': ['69', '72']}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'parents'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'parent'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '79', 'type': 'expression_statement', 'children': ['80']}; {'id': '80', 'type': 'assignment', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'array'}; {'id': '82', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '83', 'type': 'for_statement', 'children': ['84', '85', '86']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'groups'}; {'id': '86', 'type': 'block', 'children': ['87']}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'augmented_assignment', 'children': ['89', '90'], 'value': '+='}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'array'}; {'id': '90', 'type': 'call', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '92', 'type': 'argument_list', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'group'}; {'id': '94', 'type': 'keyword_argument', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '96', 'type': 'lambda', 'children': ['97', '99']}, {'id': '97', 'type': 'lambda_parameters', 'children': ['98']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'element'}, {'id': '99', 'type': 'call', 'children': ['100', '107']}; {'id': '100', 'type': 'attribute', 'children': ['101', '106']}, {'id': '101', 'type': 'attribute', 'children': ['102', '105']}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'element'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'contents'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '107', 'type': 'argument_list', 'children': ['108']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'element'}, {'id': '109', 'type': 'return_statement', 'children': ['110']} | def _sort_results(self, results):
parents = []
groups = []
for result in results:
if not self._in_list(parents, result.parent):
parents.append(result.parent)
groups.append([])
groups[len(groups) - 1].append(result)
else:
groups[parents.index(result.parent)].append(result)
array = []
for group in groups:
array += sorted(
group,
key=lambda element: element.parent.contents.index(element)
)
return array |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_update_sorting'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '12', '18', '24', '30', '82', '92', '107']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'sorted_tops'}, {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'sorted_tops'}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'tops'}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'tops'}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'iterators'}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'iterators'}; {'id': '30', 'type': 'for_statement', 'children': ['31', '32', '35']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'idx'}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'idxs'}, {'id': '35', 'type': 'block', 'children': ['36']}; {'id': '36', 'type': 'try_statement', 'children': ['37', '78']}, {'id': '37', 'type': 'block', 'children': ['38', '49', '58', '69']}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'assignment', 'children': ['40', '43']}; {'id': '40', 'type': 'subscript', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'tops'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'idx'}, {'id': '43', 'type': 'call', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'next'}, {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'subscript', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'iterators'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'idx'}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'top_key'}; {'id': '52', 'type': 'call', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '54', 'type': 'argument_list', 'children': ['55']}, {'id': '55', 'type': 'subscript', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'tops'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'idx'}; {'id': '58', 'type': 'if_statement', 'children': ['59', '62']}, {'id': '59', 'type': 'comparison_operator', 'children': ['60', '61'], 'value': 'not'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'top_key'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'sorted_tops'}; {'id': '62', 'type': 'block', 'children': ['63']}, {'id': '63', 'type': 'expression_statement', 'children': ['64']}; {'id': '64', 'type': 'assignment', 'children': ['65', '68']}, {'id': '65', 'type': 'subscript', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'sorted_tops'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'top_key'}; {'id': '68', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '69', 'type': 'expression_statement', 'children': ['70']}; {'id': '70', 'type': 'call', 'children': ['71', '76']}, {'id': '71', 'type': 'attribute', 'children': ['72', '75']}; {'id': '72', 'type': 'subscript', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'sorted_tops'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'top_key'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'idx'}; {'id': '78', 'type': 'except_clause', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'StopIteration'}; {'id': '80', 'type': 'block', 'children': ['81']}, {'id': '81', 'type': 'pass_statement', 'children': []}; {'id': '82', 'type': 'if_statement', 'children': ['83', '89']}, {'id': '83', 'type': 'comparison_operator', 'children': ['84', '88'], 'value': '=='}; {'id': '84', 'type': 'call', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '86', 'type': 'argument_list', 'children': ['87']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'sorted_tops'}; {'id': '88', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '89', 'type': 'block', 'children': ['90']}; {'id': '90', 'type': 'raise_statement', 'children': ['91']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'StopIteration'}; {'id': '92', 'type': 'expression_statement', 'children': ['93']}, {'id': '93', 'type': 'assignment', 'children': ['94', '99']}; {'id': '94', 'type': 'pattern_list', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '96', 'type': 'attribute', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'idxs'}, {'id': '99', 'type': 'call', 'children': ['100', '103']}; {'id': '100', 'type': 'attribute', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'sorted_tops'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'popitem'}, {'id': '103', 'type': 'argument_list', 'children': ['104']}; {'id': '104', 'type': 'keyword_argument', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'last'}; {'id': '106', 'type': 'False', 'children': []}, {'id': '107', 'type': 'expression_statement', 'children': ['108']}; {'id': '108', 'type': 'assignment', 'children': ['109', '112']}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'c_idx'} | def _update_sorting(self):
key = self.key
sorted_tops = self.sorted_tops
tops = self.tops
iterators = self.iterators
for idx in self.idxs:
try:
tops[idx] = next(iterators[idx])
top_key = key(tops[idx])
if top_key not in sorted_tops:
sorted_tops[top_key] = []
sorted_tops[top_key].append(idx)
except StopIteration:
pass
if len(sorted_tops) == 0:
raise StopIteration
key, self.idxs = sorted_tops.popitem(last=False)
self.c_idx = 0 |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '4']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'domain_user_stats'}, {'id': '3', 'type': 'parameters', 'children': []}; {'id': '4', 'type': 'block', 'children': ['5', '24', '42']}, {'id': '5', 'type': 'expression_statement', 'children': ['6']}; {'id': '6', 'type': 'assignment', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'fname'}; {'id': '8', 'type': 'call', 'children': ['9', '14']}, {'id': '9', 'type': 'attribute', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '14', 'type': 'argument_list', 'children': ['15', '23']}, {'id': '15', 'type': 'call', 'children': ['16', '21']}; {'id': '16', 'type': 'attribute', 'children': ['17', '20']}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'dirname'}, {'id': '21', 'type': 'argument_list', 'children': ['22']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': '__file__'}, {'id': '23', 'type': 'string', 'children': [], 'value': '"email_domain_users.csv"'}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'stats'}, {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'pd'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'read_csv'}, {'id': '31', 'type': 'argument_list', 'children': ['32', '33', '36', '39']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'fname'}, {'id': '33', 'type': 'keyword_argument', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'header'}, {'id': '35', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '36', 'type': 'keyword_argument', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'squeeze'}; {'id': '38', 'type': 'True', 'children': []}, {'id': '39', 'type': 'keyword_argument', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'index_col'}, {'id': '41', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '42', 'type': 'return_statement', 'children': ['43']}, {'id': '43', 'type': 'subscript', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'stats'}, {'id': '45', 'type': 'call', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'pd'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'notnull'}, {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'stats'} | def domain_user_stats():
fname = os.path.join(os.path.dirname(__file__), "email_domain_users.csv")
stats = pd.read_csv(fname, header=0, squeeze=True, index_col=0)
return stats[pd.notnull(stats.index)] |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_topological_sort'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '10', '20', '33', '76', '93', '109', '156', '178']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'sorted_graph'}, {'id': '9', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}, {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'node_map'}, {'id': '13', 'type': 'call', 'children': ['14', '19']}; {'id': '14', 'type': 'attribute', 'children': ['15', '18']}, {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': '_graph'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'get_nodes'}, {'id': '19', 'type': 'argument_list', 'children': []}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '23', 'type': 'list_comprehension', 'children': ['24', '30']}; {'id': '24', 'type': 'call', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'NodeVisitor'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}, {'id': '27', 'type': 'subscript', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'node_map'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '30', 'type': 'for_in_clause', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'node_map'}, {'id': '33', 'type': 'function_definition', 'children': ['34', '35', '37']}; {'id': '34', 'type': 'function_name', 'children': [], 'value': 'get_pointers_for_edge_nodes'}, {'id': '35', 'type': 'parameters', 'children': ['36']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'visitor_decorated_node'}, {'id': '37', 'type': 'block', 'children': ['38', '42', '54', '74']}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'assignment', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'edges'}, {'id': '41', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'edge_ids'}, {'id': '45', 'type': 'call', 'children': ['46', '53']}; {'id': '46', 'type': 'attribute', 'children': ['47', '52']}, {'id': '47', 'type': 'call', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'visitor_decorated_node'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'get_node'}, {'id': '51', 'type': 'argument_list', 'children': []}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'get_edges'}, {'id': '53', 'type': 'argument_list', 'children': []}; {'id': '54', 'type': 'for_statement', 'children': ['55', '56', '57']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '57', 'type': 'block', 'children': ['58']}; {'id': '58', 'type': 'if_statement', 'children': ['59', '66']}, {'id': '59', 'type': 'comparison_operator', 'children': ['60', '65'], 'value': 'in'}; {'id': '60', 'type': 'call', 'children': ['61', '64']}, {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'get_id'}; {'id': '64', 'type': 'argument_list', 'children': []}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'edge_ids'}; {'id': '66', 'type': 'block', 'children': ['67']}, {'id': '67', 'type': 'expression_statement', 'children': ['68']}; {'id': '68', 'type': 'call', 'children': ['69', '72']}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'edges'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '74', 'type': 'return_statement', 'children': ['75']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'edges'}; {'id': '76', 'type': 'for_statement', 'children': ['77', '78', '79']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '79', 'type': 'block', 'children': ['80']}; {'id': '80', 'type': 'for_statement', 'children': ['81', '82', '86']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'edge'}; {'id': '82', 'type': 'call', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'get_pointers_for_edge_nodes'}; {'id': '84', 'type': 'argument_list', 'children': ['85']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '86', 'type': 'block', 'children': ['87']}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'call', 'children': ['89', '92']}, {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'edge'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'increment'}; {'id': '92', 'type': 'argument_list', 'children': []}, {'id': '93', 'type': 'expression_statement', 'children': ['94']}; {'id': '94', 'type': 'assignment', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'resolved'}; {'id': '96', 'type': 'list_comprehension', 'children': ['97', '98', '101']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '98', 'type': 'for_in_clause', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '101', 'type': 'if_clause', 'children': ['102']}; {'id': '102', 'type': 'comparison_operator', 'children': ['103', '108'], 'value': '=='}, {'id': '103', 'type': 'call', 'children': ['104', '107']}; {'id': '104', 'type': 'attribute', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'get_weight'}, {'id': '107', 'type': 'argument_list', 'children': []}; {'id': '108', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '109', 'type': 'while_statement', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'resolved'}, {'id': '111', 'type': 'block', 'children': ['112', '120', '127']}; {'id': '112', 'type': 'expression_statement', 'children': ['113']}, {'id': '113', 'type': 'assignment', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '115', 'type': 'call', 'children': ['116', '119']}; {'id': '116', 'type': 'attribute', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'resolved'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'pop'}, {'id': '119', 'type': 'argument_list', 'children': []}; {'id': '120', 'type': 'expression_statement', 'children': ['121']}, {'id': '121', 'type': 'call', 'children': ['122', '125']}; {'id': '122', 'type': 'attribute', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'sorted_graph'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '125', 'type': 'argument_list', 'children': ['126']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '127', 'type': 'for_statement', 'children': ['128', '129', '133']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'edge'}, {'id': '129', 'type': 'call', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'get_pointers_for_edge_nodes'}, {'id': '131', 'type': 'argument_list', 'children': ['132']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '133', 'type': 'block', 'children': ['134', '140']}; {'id': '134', 'type': 'expression_statement', 'children': ['135']}, {'id': '135', 'type': 'call', 'children': ['136', '139']}; {'id': '136', 'type': 'attribute', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'edge'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'decrement'}, {'id': '139', 'type': 'argument_list', 'children': []}; {'id': '140', 'type': 'if_statement', 'children': ['141', '148']}, {'id': '141', 'type': 'comparison_operator', 'children': ['142', '147'], 'value': '=='}; {'id': '142', 'type': 'call', 'children': ['143', '146']}, {'id': '143', 'type': 'attribute', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'edge'}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'get_weight'}; {'id': '146', 'type': 'argument_list', 'children': []}, {'id': '147', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '148', 'type': 'block', 'children': ['149']}, {'id': '149', 'type': 'expression_statement', 'children': ['150']}; {'id': '150', 'type': 'call', 'children': ['151', '154']}, {'id': '151', 'type': 'attribute', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'resolved'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '154', 'type': 'argument_list', 'children': ['155']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'edge'}; {'id': '156', 'type': 'expression_statement', 'children': ['157']}, {'id': '157', 'type': 'assignment', 'children': ['158', '161']}; {'id': '158', 'type': 'attribute', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': '_circular_dependencies'}, {'id': '161', 'type': 'list_comprehension', 'children': ['162', '167', '170']}; {'id': '162', 'type': 'call', 'children': ['163', '166']}, {'id': '163', 'type': 'attribute', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'get_node'}; {'id': '166', 'type': 'argument_list', 'children': []}, {'id': '167', 'type': 'for_in_clause', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '170', 'type': 'if_clause', 'children': ['171']}, {'id': '171', 'type': 'comparison_operator', 'children': ['172', '177'], 'value': '>'}; {'id': '172', 'type': 'call', 'children': ['173', '176']}, {'id': '173', 'type': 'attribute', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'get_weight'}; {'id': '176', 'type': 'argument_list', 'children': []}, {'id': '177', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '178', 'type': 'expression_statement', 'children': ['179']}, {'id': '179', 'type': 'assignment', 'children': ['180', '183']}; {'id': '180', 'type': 'attribute', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '182', 'type': 'identifier', 'children': [], 'value': '_sorted_nodes'}, {'id': '183', 'type': 'call', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '185', 'type': 'argument_list', 'children': ['186']}; {'id': '186', 'type': 'call', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'reversed'}; {'id': '188', 'type': 'argument_list', 'children': ['189']}, {'id': '189', 'type': 'list_comprehension', 'children': ['190', '195']}; {'id': '190', 'type': 'call', 'children': ['191', '194']}, {'id': '191', 'type': 'attribute', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'get_node'}; {'id': '194', 'type': 'argument_list', 'children': []}, {'id': '195', 'type': 'for_in_clause', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'sorted_graph'} | def _topological_sort(self):
sorted_graph = []
node_map = self._graph.get_nodes()
nodes = [NodeVisitor(node_map[node]) for node in node_map]
def get_pointers_for_edge_nodes(visitor_decorated_node):
edges = []
edge_ids = visitor_decorated_node.get_node().get_edges()
for node in nodes:
if node.get_id() in edge_ids:
edges.append(node)
return edges
for node in nodes:
for edge in get_pointers_for_edge_nodes(node):
edge.increment()
resolved = [node for node in nodes if node.get_weight() == 0]
while resolved:
node = resolved.pop()
sorted_graph.append(node)
for edge in get_pointers_for_edge_nodes(node):
edge.decrement()
if edge.get_weight() == 0:
resolved.append(edge)
self._circular_dependencies = [
node.get_node() for node in nodes if node.get_weight() > 0]
self._sorted_nodes = list(reversed(
[node.get_node() for node in sorted_graph])) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'plugins'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'spec'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '11', '18', '29', '41']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'string', 'children': [], 'value': '\'\'\'\n Returns a `PluginSet` object for the specified setuptools-style\n entrypoint `group`. This is just a wrapper around\n `pkg_resources.iter_entry_points` that allows the plugins to sort\n and override themselves.\n The optional `spec` parameter controls how and what plugins are\n loaded. If it is ``None`` or the special value ``\'*\'``, then the\n normal plugin loading will occur, i.e. all registered plugins will\n be loaded and their self-declared ordering and dependencies will be\n applied.\n Otherwise, the `spec` is taken as a comma- or whitespace-separated\n list of plugins to load. In this mode, the `spec` can either specify\n an exact list of plugins to load, in the specified order, referred\n to as an "absolute" spec. Otherwise, it is a "relative" spec, which\n indicates that it only adjusts the standard registered plugin\n loading. A spec is a list of either absolute or relative\n instructions, and they cannot be mixed.\n In either mode, a plugin is identified either by name for registered\n plugins (e.g. ``foo``), or by fully-qualified Python module and\n symbol name for unregistered plugins\n (e.g. ``package.module.symbol``).\n Plugins in an absolute spec are loaded in the order specified and\n can be optionally prefixed with the following special characters:\n * ``\'?\'`` : the specified plugin should be loaded if available. If\n it is not registered, cannot be found, or cannot be loaded, then\n it is ignored (a DEBUG log message will be emitted, however).\n Plugins in a relative spec are always prefixed with at least one of\n the following special characters:\n * ``\'-\'`` : removes the specified plugin; this does not affect\n plugin ordering, it only removes the plugin from the loaded\n list. If the plugin does not exist, no error is thrown.\n * ``\'+\'`` : adds or requires the specified plugin to the loaded\n set. If the plugin is not a named/registered plugin, then it will\n be loaded as an asset-symbol, i.e. a Python-dotted module and\n symbol name. If the plugin does not exist or cannot be loaded,\n this will throw an error. It does not affect the plugin ordering\n of registered plugins.\n * ``\'/\'`` : the plugin name is taken as a regular expression that\n will be used to match plugin names and it must terminate in a\n slash. Note that this must be the **last** element in the spec\n list.\n Examples:\n * ``\'*\'`` : load all registered plugins.\n * ``\'foo,bar\'`` : load the "foo" plugin, then the "bar" plugin.\n * ``\'foo,?bar\'`` : load the "foo" plugin and if the "bar" plugin\n exists, load it too.\n * ``\'-zig\'`` : load all registered plugins except the "zig" plugin.\n * ``\'+pkg.foo.bar\'`` : load all registered plugins and then load\n the "pkg.foo.bar" Python symbol.\n * ``\'pkg.foo.bar\'`` : load only the "pkg.foo.bar" Python symbol.\n \'\'\''}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'pspec'}; {'id': '14', 'type': 'call', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': '_parse_spec'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'spec'}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'plugs'}, {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'call', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': '_get_registered_plugins'}; {'id': '26', 'type': 'argument_list', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'group'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'pspec'}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'augmented_assignment', 'children': ['31', '32'], 'value': '+='}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'plugs'}; {'id': '32', 'type': 'call', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}, {'id': '35', 'type': 'call', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': '_get_unregistered_plugins'}, {'id': '37', 'type': 'argument_list', 'children': ['38', '39', '40']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'plugs'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'pspec'}, {'id': '41', 'type': 'return_statement', 'children': ['42']}; {'id': '42', 'type': 'call', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'PluginSet'}; {'id': '44', 'type': 'argument_list', 'children': ['45', '46', '47']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'group'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'spec'}, {'id': '47', 'type': 'call', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'call', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': '_sort_plugins'}; {'id': '52', 'type': 'argument_list', 'children': ['53', '54', '55', '56']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'group'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'plugs'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'pspec'} | def plugins(group, spec=None):
'''
Returns a `PluginSet` object for the specified setuptools-style
entrypoint `group`. This is just a wrapper around
`pkg_resources.iter_entry_points` that allows the plugins to sort
and override themselves.
The optional `spec` parameter controls how and what plugins are
loaded. If it is ``None`` or the special value ``'*'``, then the
normal plugin loading will occur, i.e. all registered plugins will
be loaded and their self-declared ordering and dependencies will be
applied.
Otherwise, the `spec` is taken as a comma- or whitespace-separated
list of plugins to load. In this mode, the `spec` can either specify
an exact list of plugins to load, in the specified order, referred
to as an "absolute" spec. Otherwise, it is a "relative" spec, which
indicates that it only adjusts the standard registered plugin
loading. A spec is a list of either absolute or relative
instructions, and they cannot be mixed.
In either mode, a plugin is identified either by name for registered
plugins (e.g. ``foo``), or by fully-qualified Python module and
symbol name for unregistered plugins
(e.g. ``package.module.symbol``).
Plugins in an absolute spec are loaded in the order specified and
can be optionally prefixed with the following special characters:
* ``'?'`` : the specified plugin should be loaded if available. If
it is not registered, cannot be found, or cannot be loaded, then
it is ignored (a DEBUG log message will be emitted, however).
Plugins in a relative spec are always prefixed with at least one of
the following special characters:
* ``'-'`` : removes the specified plugin; this does not affect
plugin ordering, it only removes the plugin from the loaded
list. If the plugin does not exist, no error is thrown.
* ``'+'`` : adds or requires the specified plugin to the loaded
set. If the plugin is not a named/registered plugin, then it will
be loaded as an asset-symbol, i.e. a Python-dotted module and
symbol name. If the plugin does not exist or cannot be loaded,
this will throw an error. It does not affect the plugin ordering
of registered plugins.
* ``'/'`` : the plugin name is taken as a regular expression that
will be used to match plugin names and it must terminate in a
slash. Note that this must be the **last** element in the spec
list.
Examples:
* ``'*'`` : load all registered plugins.
* ``'foo,bar'`` : load the "foo" plugin, then the "bar" plugin.
* ``'foo,?bar'`` : load the "foo" plugin and if the "bar" plugin
exists, load it too.
* ``'-zig'`` : load all registered plugins except the "zig" plugin.
* ``'+pkg.foo.bar'`` : load all registered plugins and then load
the "pkg.foo.bar" Python symbol.
* ``'pkg.foo.bar'`` : load only the "pkg.foo.bar" Python symbol.
'''
pspec = _parse_spec(spec)
plugs = list(_get_registered_plugins(group, pspec))
plugs += list(_get_unregistered_plugins(group, plugs, pspec))
return PluginSet(group, spec, list(_sort_plugins(group, plugs, pspec, spec))) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'match_any_string'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'strings'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'word'}; {'id': '8', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'offset'}, {'id': '11', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '12', 'type': 'block', 'children': ['13', '32', '36', '40', '44', '77']}, {'id': '13', 'type': 'if_statement', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'word'}, {'id': '15', 'type': 'block', 'children': ['16', '25']}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'current'}, {'id': '19', 'type': 'call', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'get_string'}, {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'offset'}, {'id': '25', 'type': 'return_statement', 'children': ['26']}; {'id': '26', 'type': 'conditional_expression', 'children': ['27', '28', '31'], 'value': 'if'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'current'}; {'id': '28', 'type': 'comparison_operator', 'children': ['29', '30'], 'value': 'in'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'current'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'strings'}, {'id': '31', 'type': 'string', 'children': [], 'value': "''"}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'current'}, {'id': '35', 'type': 'string', 'children': [], 'value': "''"}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}, {'id': '37', 'type': 'assignment', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'currentlength'}, {'id': '39', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'assignment', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'length'}, {'id': '43', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '44', 'type': 'for_statement', 'children': ['45', '46', '47']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'string'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'strings'}, {'id': '47', 'type': 'block', 'children': ['48', '55', '70']}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'assignment', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'length'}, {'id': '51', 'type': 'call', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'string'}, {'id': '55', 'type': 'if_statement', 'children': ['56', '59']}; {'id': '56', 'type': 'comparison_operator', 'children': ['57', '58'], 'value': '!='}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'length'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'currentlength'}, {'id': '59', 'type': 'block', 'children': ['60']}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'assignment', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'current'}, {'id': '63', 'type': 'call', 'children': ['64', '67']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'get_length'}, {'id': '67', 'type': 'argument_list', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'length'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'offset'}; {'id': '70', 'type': 'if_statement', 'children': ['71', '74']}, {'id': '71', 'type': 'comparison_operator', 'children': ['72', '73'], 'value': '=='}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'string'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'current'}; {'id': '74', 'type': 'block', 'children': ['75']}, {'id': '75', 'type': 'return_statement', 'children': ['76']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'string'}, {'id': '77', 'type': 'return_statement', 'children': ['78']} | def match_any_string(self, strings, word=0, offset=0):
if word:
current = self.get_string(offset)
return current if current in strings else ''
current = ''
currentlength = 0
length = 0
for string in strings:
length = len(string)
if length != currentlength:
current = self.get_length(length, offset)
if string == current:
return string
return '' |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'decide_which_users_to_annotate'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'centrality_vector'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'number_to_annotate'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'already_annotated'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'node_to_id'}; {'id': '8', 'type': 'block', 'children': ['9', '18', '32', '66', '72', '78', '82', '112']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'centrality_vector'}; {'id': '12', 'type': 'call', 'children': ['13', '16']}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'asarray'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'centrality_vector'}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'ind'}, {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'argsort'}, {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'call', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'squeeze'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'centrality_vector'}; {'id': '32', 'type': 'if_statement', 'children': ['33', '38', '49']}, {'id': '33', 'type': 'comparison_operator', 'children': ['34', '37'], 'value': '>'}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'centrality_vector'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'size'}, {'id': '37', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '38', 'type': 'block', 'children': ['39']}, {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'assignment', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'reversed_ind'}; {'id': '42', 'type': 'subscript', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'ind'}; {'id': '44', 'type': 'slice', 'children': ['45', '46', '47']}, {'id': '45', 'type': 'colon', 'children': []}; {'id': '46', 'type': 'colon', 'children': []}, {'id': '47', 'type': 'unary_operator', 'children': ['48'], 'value': '-'}; {'id': '48', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '49', 'type': 'else_clause', 'children': ['50']}; {'id': '50', 'type': 'block', 'children': ['51', '57']}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'reversed_ind'}; {'id': '54', 'type': 'call', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '56', 'type': 'argument_list', 'children': []}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'reversed_ind'}; {'id': '60', 'type': 'call', 'children': ['61', '64']}, {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'reversed_ind'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '64', 'type': 'argument_list', 'children': ['65']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'ind'}; {'id': '66', 'type': 'expression_statement', 'children': ['67']}, {'id': '67', 'type': 'assignment', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'user_id_list'}, {'id': '69', 'type': 'call', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '71', 'type': 'argument_list', 'children': []}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'assignment', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'append_user_id'}, {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'user_id_list'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '78', 'type': 'expression_statement', 'children': ['79']}, {'id': '79', 'type': 'assignment', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'counter'}, {'id': '81', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '82', 'type': 'for_statement', 'children': ['83', '84', '85']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'reversed_ind'}, {'id': '85', 'type': 'block', 'children': ['86', '92']}; {'id': '86', 'type': 'expression_statement', 'children': ['87']}, {'id': '87', 'type': 'assignment', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'user_twitter_id'}, {'id': '89', 'type': 'subscript', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'node_to_id'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '92', 'type': 'if_statement', 'children': ['93', '96']}, {'id': '93', 'type': 'comparison_operator', 'children': ['94', '95'], 'value': 'not'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'user_twitter_id'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'already_annotated'}; {'id': '96', 'type': 'block', 'children': ['97', '102', '106']}, {'id': '97', 'type': 'expression_statement', 'children': ['98']}; {'id': '98', 'type': 'call', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'append_user_id'}; {'id': '100', 'type': 'argument_list', 'children': ['101']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'user_twitter_id'}; {'id': '102', 'type': 'expression_statement', 'children': ['103']}, {'id': '103', 'type': 'augmented_assignment', 'children': ['104', '105'], 'value': '+='}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'counter'}, {'id': '105', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '106', 'type': 'if_statement', 'children': ['107', '110']}, {'id': '107', 'type': 'comparison_operator', 'children': ['108', '109'], 'value': '>='}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'counter'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'number_to_annotate'}; {'id': '110', 'type': 'block', 'children': ['111']}, {'id': '111', 'type': 'break_statement', 'children': []}; {'id': '112', 'type': 'return_statement', 'children': ['113']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'user_id_list'} | def decide_which_users_to_annotate(centrality_vector,
number_to_annotate,
already_annotated,
node_to_id):
centrality_vector = np.asarray(centrality_vector)
ind = np.argsort(np.squeeze(centrality_vector))
if centrality_vector.size > 1:
reversed_ind = ind[::-1]
else:
reversed_ind = list()
reversed_ind = reversed_ind.append(ind)
user_id_list = list()
append_user_id = user_id_list.append
counter = 0
for node in reversed_ind:
user_twitter_id = node_to_id[node]
if user_twitter_id not in already_annotated:
append_user_id(user_twitter_id)
counter += 1
if counter >= number_to_annotate:
break
return user_id_list |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '27']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'search'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '24']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'sort_map'}; {'id': '8', 'type': 'dictionary', 'children': ['9', '12', '15', '18', '21']}, {'id': '9', 'type': 'pair', 'children': ['10', '11']}; {'id': '10', 'type': 'string', 'children': [], 'value': "'BoxSet'"}, {'id': '11', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '12', 'type': 'pair', 'children': ['13', '14']}, {'id': '13', 'type': 'string', 'children': [], 'value': "'Series'"}; {'id': '14', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '15', 'type': 'pair', 'children': ['16', '17']}; {'id': '16', 'type': 'string', 'children': [], 'value': "'Movie'"}, {'id': '17', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '18', 'type': 'pair', 'children': ['19', '20']}, {'id': '19', 'type': 'string', 'children': [], 'value': "'Audio'"}; {'id': '20', 'type': 'integer', 'children': [], 'value': '3'}, {'id': '21', 'type': 'pair', 'children': ['22', '23']}; {'id': '22', 'type': 'string', 'children': [], 'value': "'Person'"}, {'id': '23', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '24', 'type': 'default_parameter', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'strict_sort'}; {'id': '26', 'type': 'False', 'children': []}, {'id': '27', 'type': 'block', 'children': ['28', '30', '40', '58', '72', '84', '91', '112']}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'string', 'children': [], 'value': "'''Sends a search request to emby, returns results\n |coro|\n Parameters\n ----------\n query : str\n the search string to send to emby\n sort_map : dict\n is a dict of strings to ints. Strings should be item types, and\n the ints are the priority of those types(for sorting).\n lower valued(0) will appear first.\n strict_sort : bool\n if True, then only item types in the keys of sortmap will be\n included in the results\n Returns\n -------\n list\n list of emby objects\n '''"}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'assignment', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'search_params'}, {'id': '33', 'type': 'dictionary', 'children': ['34', '37']}; {'id': '34', 'type': 'pair', 'children': ['35', '36']}, {'id': '35', 'type': 'string', 'children': [], 'value': "'remote'"}; {'id': '36', 'type': 'False', 'children': []}, {'id': '37', 'type': 'pair', 'children': ['38', '39']}; {'id': '38', 'type': 'string', 'children': [], 'value': "'searchTerm'"}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '40', 'type': 'if_statement', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'strict_sort'}; {'id': '42', 'type': 'block', 'children': ['43']}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '48']}, {'id': '45', 'type': 'subscript', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'search_params'}, {'id': '47', 'type': 'string', 'children': [], 'value': "'IncludeItemTypes'"}; {'id': '48', 'type': 'call', 'children': ['49', '52']}, {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'string', 'children': [], 'value': "','"}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '52', 'type': 'argument_list', 'children': ['53']}, {'id': '53', 'type': 'call', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'sort_map'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '57', 'type': 'argument_list', 'children': []}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'assignment', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'json'}, {'id': '61', 'type': 'await', 'children': ['62']}; {'id': '62', 'type': 'call', 'children': ['63', '68']}, {'id': '63', 'type': 'attribute', 'children': ['64', '67']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'connector'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'getJson'}; {'id': '68', 'type': 'argument_list', 'children': ['69', '70']}, {'id': '69', 'type': 'string', 'children': [], 'value': "'/Search/Hints/'"}; {'id': '70', 'type': 'dictionary_splat', 'children': ['71']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'search_params'}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'assignment', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '75', 'type': 'await', 'children': ['76']}; {'id': '76', 'type': 'call', 'children': ['77', '80']}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'process'}; {'id': '80', 'type': 'argument_list', 'children': ['81']}, {'id': '81', 'type': 'subscript', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'json'}, {'id': '83', 'type': 'string', 'children': [], 'value': '"SearchHints"'}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}, {'id': '85', 'type': 'assignment', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'm_size'}, {'id': '87', 'type': 'call', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '89', 'type': 'argument_list', 'children': ['90']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'sort_map'}, {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'assignment', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '94', 'type': 'call', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '96', 'type': 'argument_list', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '98', 'type': 'keyword_argument', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '100', 'type': 'lambda', 'children': ['101', '103']}, {'id': '101', 'type': 'lambda_parameters', 'children': ['102']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '103', 'type': 'call', 'children': ['104', '107']}; {'id': '104', 'type': 'attribute', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'sort_map'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '107', 'type': 'argument_list', 'children': ['108', '111']}; {'id': '108', 'type': 'attribute', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'm_size'}; {'id': '112', 'type': 'return_statement', 'children': ['113']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'items'} | async def search(self, query,
sort_map = {'BoxSet':0,'Series':1,'Movie':2,'Audio':3,'Person':4},
strict_sort = False):
'''Sends a search request to emby, returns results
|coro|
Parameters
----------
query : str
the search string to send to emby
sort_map : dict
is a dict of strings to ints. Strings should be item types, and
the ints are the priority of those types(for sorting).
lower valued(0) will appear first.
strict_sort : bool
if True, then only item types in the keys of sortmap will be
included in the results
Returns
-------
list
list of emby objects
'''
search_params = {
'remote' : False,
'searchTerm' : query
}
if strict_sort:
search_params['IncludeItemTypes'] = ','.join(sort_map.keys())
json = await self.connector.getJson('/Search/Hints/', **search_params)
items = await self.process(json["SearchHints"])
m_size = len(sort_map)
items = sorted(items, key = lambda x : sort_map.get(x.type, m_size))
return items |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'set_attribute_string'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'target'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '7', 'type': 'block', 'children': ['8']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'set_attribute'}, {'id': '11', 'type': 'argument_list', 'children': ['12', '13', '14']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'target'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '14', 'type': 'call', 'children': ['15', '18']}, {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'bytes_'}; {'id': '18', 'type': 'argument_list', 'children': ['19']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'value'} | def set_attribute_string(target, name, value):
set_attribute(target, name, np.bytes_(value)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '__calculate_edge_weights'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'dfs_data'}, {'id': '5', 'type': 'block', 'children': ['6', '12', '16', '38']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'graph'}, {'id': '9', 'type': 'subscript', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'dfs_data'}, {'id': '11', 'type': 'string', 'children': [], 'value': "'graph'"}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'weights'}, {'id': '15', 'type': 'dictionary', 'children': []}; {'id': '16', 'type': 'for_statement', 'children': ['17', '18', '23']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'edge_id'}; {'id': '18', 'type': 'call', 'children': ['19', '22']}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'graph'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'get_all_edge_ids'}; {'id': '22', 'type': 'argument_list', 'children': []}, {'id': '23', 'type': 'block', 'children': ['24', '32']}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'edge_weight'}, {'id': '27', 'type': 'call', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': '__edge_weight'}, {'id': '29', 'type': 'argument_list', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'edge_id'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'dfs_data'}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '37']}; {'id': '34', 'type': 'subscript', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'weights'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'edge_id'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'edge_weight'}; {'id': '38', 'type': 'return_statement', 'children': ['39']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'weights'} | def __calculate_edge_weights(dfs_data):
graph = dfs_data['graph']
weights = {}
for edge_id in graph.get_all_edge_ids():
edge_weight = __edge_weight(edge_id, dfs_data)
weights[edge_id] = edge_weight
return weights |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '__sort_adjacency_lists'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'dfs_data'}, {'id': '5', 'type': 'block', 'children': ['6', '10', '16', '22', '28', '121']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'new_adjacency_lists'}, {'id': '9', 'type': 'dictionary', 'children': []}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}, {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'adjacency_lists'}, {'id': '13', 'type': 'subscript', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'dfs_data'}, {'id': '15', 'type': 'string', 'children': [], 'value': "'adj'"}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'edge_weights'}, {'id': '19', 'type': 'subscript', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'dfs_data'}, {'id': '21', 'type': 'string', 'children': [], 'value': "'edge_weights'"}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'edge_lookup'}, {'id': '25', 'type': 'subscript', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'dfs_data'}, {'id': '27', 'type': 'string', 'children': [], 'value': "'edge_lookup'"}; {'id': '28', 'type': 'for_statement', 'children': ['29', '32', '40']}, {'id': '29', 'type': 'pattern_list', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'node_id'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'adj_list'}; {'id': '32', 'type': 'call', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}, {'id': '35', 'type': 'call', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'adjacency_lists'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '39', 'type': 'argument_list', 'children': []}; {'id': '40', 'type': 'block', 'children': ['41', '45', '49', '86', '101', '115']}, {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'node_weight_lookup'}; {'id': '44', 'type': 'dictionary', 'children': []}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'frond_lookup'}; {'id': '48', 'type': 'dictionary', 'children': []}, {'id': '49', 'type': 'for_statement', 'children': ['50', '51', '52']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'node_b'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'adj_list'}; {'id': '52', 'type': 'block', 'children': ['53', '65', '73']}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'edge_id'}; {'id': '56', 'type': 'call', 'children': ['57', '62']}, {'id': '57', 'type': 'attribute', 'children': ['58', '61']}; {'id': '58', 'type': 'subscript', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'dfs_data'}; {'id': '60', 'type': 'string', 'children': [], 'value': "'graph'"}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'get_first_edge_id_by_node_ids'}; {'id': '62', 'type': 'argument_list', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'node_id'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'node_b'}, {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'assignment', 'children': ['67', '70']}, {'id': '67', 'type': 'subscript', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'node_weight_lookup'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'node_b'}; {'id': '70', 'type': 'subscript', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'edge_weights'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'edge_id'}, {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'assignment', 'children': ['75', '78']}, {'id': '75', 'type': 'subscript', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'frond_lookup'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'node_b'}; {'id': '78', 'type': 'conditional_expression', 'children': ['79', '80', '85'], 'value': 'if'}, {'id': '79', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '80', 'type': 'comparison_operator', 'children': ['81', '84'], 'value': '=='}, {'id': '81', 'type': 'subscript', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'edge_lookup'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'edge_id'}; {'id': '84', 'type': 'string', 'children': [], 'value': "'backedge'"}, {'id': '85', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '86', 'type': 'expression_statement', 'children': ['87']}, {'id': '87', 'type': 'assignment', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'new_list'}, {'id': '89', 'type': 'call', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '91', 'type': 'argument_list', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'adj_list'}, {'id': '93', 'type': 'keyword_argument', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '95', 'type': 'lambda', 'children': ['96', '98']}; {'id': '96', 'type': 'lambda_parameters', 'children': ['97']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '98', 'type': 'subscript', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'frond_lookup'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '101', 'type': 'expression_statement', 'children': ['102']}; {'id': '102', 'type': 'call', 'children': ['103', '106']}, {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'new_list'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '106', 'type': 'argument_list', 'children': ['107']}, {'id': '107', 'type': 'keyword_argument', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '109', 'type': 'lambda', 'children': ['110', '112']}; {'id': '110', 'type': 'lambda_parameters', 'children': ['111']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '112', 'type': 'subscript', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'node_weight_lookup'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '115', 'type': 'expression_statement', 'children': ['116']}; {'id': '116', 'type': 'assignment', 'children': ['117', '120']}, {'id': '117', 'type': 'subscript', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'new_adjacency_lists'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'node_id'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'new_list'}, {'id': '121', 'type': 'return_statement', 'children': ['122']} | def __sort_adjacency_lists(dfs_data):
new_adjacency_lists = {}
adjacency_lists = dfs_data['adj']
edge_weights = dfs_data['edge_weights']
edge_lookup = dfs_data['edge_lookup']
for node_id, adj_list in list(adjacency_lists.items()):
node_weight_lookup = {}
frond_lookup = {}
for node_b in adj_list:
edge_id = dfs_data['graph'].get_first_edge_id_by_node_ids(node_id, node_b)
node_weight_lookup[node_b] = edge_weights[edge_id]
frond_lookup[node_b] = 1 if edge_lookup[edge_id] == 'backedge' else 2
new_list = sorted(adj_list, key=lambda n: frond_lookup[n])
new_list.sort(key=lambda n: node_weight_lookup[n])
new_adjacency_lists[node_id] = new_list
return new_adjacency_lists |
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{'id': '16', 'type': 'subscript', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'dfs_data'}; {'id': '18', 'type': 'string', 'children': [], 'value': "'edge_lookup'"}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'edge'}; {'id': '22', 'type': 'call', 'children': ['23', '26']}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'graph'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'get_edge'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'edge_id'}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'assignment', 'children': ['30', '33']}; {'id': '30', 'type': 'pattern_list', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'u'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '33', 'type': 'subscript', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'edge'}, {'id': '35', 'type': 'string', 'children': [], 'value': "'vertices'"}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}, {'id': '37', 'type': 'assignment', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'd_u'}, {'id': '39', 'type': 'call', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'D'}, {'id': '41', 'type': 'argument_list', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'u'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'dfs_data'}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'assignment', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'd_v'}, {'id': '47', 'type': 'call', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'D'}, {'id': '49', 'type': 'argument_list', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'dfs_data'}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'assignment', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'lp_1'}, {'id': '55', 'type': 'call', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'L1'}, {'id': '57', 'type': 'argument_list', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'dfs_data'}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'assignment', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'd_lp_1'}, {'id': '63', 'type': 'call', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'D'}, {'id': '65', 'type': 'argument_list', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'lp_1'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'dfs_data'}; {'id': '68', 'type': 'if_statement', 'children': ['69', '78', '83', '95', '109']}, {'id': '69', 'type': 'boolean_operator', 'children': ['70', '75'], 'value': 'and'}; {'id': '70', 'type': 'comparison_operator', 'children': ['71', '74'], 'value': '=='}, {'id': '71', 'type': 'subscript', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'edge_lookup'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'edge_id'}; {'id': '74', 'type': 'string', 'children': [], 'value': "'backedge'"}, {'id': '75', 'type': 'comparison_operator', 'children': ['76', '77'], 'value': '<'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'd_v'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'd_u'}; {'id': '78', 'type': 'block', 'children': ['79']}, {'id': '79', 'type': 'return_statement', 'children': ['80']}; {'id': '80', 'type': 'binary_operator', 'children': ['81', '82'], 'value': '*'}, {'id': '81', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'd_v'}, {'id': '83', 'type': 'elif_clause', 'children': ['84', '90']}; {'id': '84', 'type': 'call', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'is_type_I_branch'}; {'id': '86', 'type': 'argument_list', 'children': ['87', '88', '89']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'u'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'dfs_data'}; {'id': '90', 'type': 'block', 'children': ['91']}, {'id': '91', 'type': 'return_statement', 'children': ['92']}; {'id': '92', 'type': 'binary_operator', 'children': ['93', '94'], 'value': '*'}, {'id': '93', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'd_lp_1'}, {'id': '95', 'type': 'elif_clause', 'children': ['96', '102']}; {'id': '96', 'type': 'call', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'is_type_II_branch'}; {'id': '98', 'type': 'argument_list', 'children': ['99', '100', '101']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'u'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'dfs_data'}; {'id': '102', 'type': 'block', 'children': ['103']}, {'id': '103', 'type': 'return_statement', 'children': ['104']}; {'id': '104', 'type': 'binary_operator', 'children': ['105', '108'], 'value': '+'}, {'id': '105', 'type': 'binary_operator', 'children': ['106', '107'], 'value': '*'}; {'id': '106', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'd_lp_1'}; {'id': '108', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '109', 'type': 'else_clause', 'children': ['110']}; {'id': '110', 'type': 'block', 'children': ['111']}, {'id': '111', 'type': 'return_statement', 'children': ['112']}; {'id': '112', 'type': 'binary_operator', 'children': ['113', '120'], 'value': '+'}, {'id': '113', 'type': 'binary_operator', 'children': ['114', '115'], 'value': '*'}; {'id': '114', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '115', 'type': 'call', 'children': ['116', '119']}; {'id': '116', 'type': 'attribute', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'graph'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'num_nodes'}, {'id': '119', 'type': 'argument_list', 'children': []} | def __edge_weight(edge_id, dfs_data):
graph = dfs_data['graph']
edge_lookup = dfs_data['edge_lookup']
edge = graph.get_edge(edge_id)
u, v = edge['vertices']
d_u = D(u, dfs_data)
d_v = D(v, dfs_data)
lp_1 = L1(v, dfs_data)
d_lp_1 = D(lp_1, dfs_data)
if edge_lookup[edge_id] == 'backedge' and d_v < d_u:
return 2*d_v
elif is_type_I_branch(u, v, dfs_data):
return 2*d_lp_1
elif is_type_II_branch(u, v, dfs_data):
return 2*d_lp_1 + 1
else:
return 2*graph.num_nodes() + 1 |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'classify_segmented_recording'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'recording'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'result_format'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '11', '22']}, {'id': '9', 'type': 'global_statement', 'children': ['10']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'single_symbol_classifier'}, {'id': '11', 'type': 'if_statement', 'children': ['12', '15']}; {'id': '12', 'type': 'comparison_operator', 'children': ['13', '14'], 'value': 'is'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'single_symbol_classifier'}; {'id': '14', 'type': 'None', 'children': []}, {'id': '15', 'type': 'block', 'children': ['16']}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'single_symbol_classifier'}, {'id': '19', 'type': 'call', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'SingleClassificer'}, {'id': '21', 'type': 'argument_list', 'children': []}; {'id': '22', 'type': 'return_statement', 'children': ['23']}, {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'single_symbol_classifier'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'predict'}, {'id': '27', 'type': 'argument_list', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'recording'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'result_format'} | def classify_segmented_recording(recording, result_format=None):
global single_symbol_classifier
if single_symbol_classifier is None:
single_symbol_classifier = SingleClassificer()
return single_symbol_classifier.predict(recording, result_format) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_by_formula_id'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'raw_datasets'}, {'id': '5', 'type': 'block', 'children': ['6', '13', '32']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'by_formula_id'}, {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'defaultdict'}, {'id': '11', 'type': 'argument_list', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '13', 'type': 'for_statement', 'children': ['14', '15', '16']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'el'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'raw_datasets'}; {'id': '16', 'type': 'block', 'children': ['17']}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'call', 'children': ['19', '28']}, {'id': '19', 'type': 'attribute', 'children': ['20', '27']}; {'id': '20', 'type': 'subscript', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'by_formula_id'}; {'id': '22', 'type': 'attribute', 'children': ['23', '26']}, {'id': '23', 'type': 'subscript', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'el'}, {'id': '25', 'type': 'string', 'children': [], 'value': "'handwriting'"}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'formula_id'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}, {'id': '29', 'type': 'subscript', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'el'}, {'id': '31', 'type': 'string', 'children': [], 'value': "'handwriting'"}; {'id': '32', 'type': 'return_statement', 'children': ['33']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'by_formula_id'} | def sort_by_formula_id(raw_datasets):
by_formula_id = defaultdict(list)
for el in raw_datasets:
by_formula_id[el['handwriting'].formula_id].append(el['handwriting'])
return by_formula_id |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_sorted_pointlist'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '14', '43', '60']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'pointlist'}, {'id': '9', 'type': 'call', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'get_pointlist'}, {'id': '13', 'type': 'argument_list', 'children': []}; {'id': '14', 'type': 'for_statement', 'children': ['15', '16', '23']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '16', 'type': 'call', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '18', 'type': 'argument_list', 'children': ['19']}, {'id': '19', 'type': 'call', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '21', 'type': 'argument_list', 'children': ['22']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'pointlist'}, {'id': '23', 'type': 'block', 'children': ['24']}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '29']}; {'id': '26', 'type': 'subscript', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'pointlist'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '29', 'type': 'call', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '31', 'type': 'argument_list', 'children': ['32', '35']}; {'id': '32', 'type': 'subscript', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'pointlist'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '35', 'type': 'keyword_argument', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '37', 'type': 'lambda', 'children': ['38', '40']}; {'id': '38', 'type': 'lambda_parameters', 'children': ['39']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '40', 'type': 'subscript', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '42', 'type': 'string', 'children': [], 'value': "'time'"}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'pointlist'}; {'id': '46', 'type': 'call', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '48', 'type': 'argument_list', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'pointlist'}; {'id': '50', 'type': 'keyword_argument', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '52', 'type': 'lambda', 'children': ['53', '55']}, {'id': '53', 'type': 'lambda_parameters', 'children': ['54']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'stroke'}, {'id': '55', 'type': 'subscript', 'children': ['56', '59']}; {'id': '56', 'type': 'subscript', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'stroke'}; {'id': '58', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '59', 'type': 'string', 'children': [], 'value': "'time'"}; {'id': '60', 'type': 'return_statement', 'children': ['61']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'pointlist'} | def get_sorted_pointlist(self):
pointlist = self.get_pointlist()
for i in range(len(pointlist)):
pointlist[i] = sorted(pointlist[i], key=lambda p: p['time'])
pointlist = sorted(pointlist, key=lambda stroke: stroke[0]['time'])
return pointlist |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_name'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'use_alias'}, {'id': '7', 'type': 'True', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '24', '41']}, {'id': '9', 'type': 'if_statement', 'children': ['10', '13', '18']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'desc'}, {'id': '13', 'type': 'block', 'children': ['14']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'assignment', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'direction'}, {'id': '17', 'type': 'string', 'children': [], 'value': "'DESC'"}; {'id': '18', 'type': 'else_clause', 'children': ['19']}, {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'direction'}, {'id': '23', 'type': 'string', 'children': [], 'value': "'ASC'"}; {'id': '24', 'type': 'if_statement', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'use_alias'}; {'id': '26', 'type': 'block', 'children': ['27']}, {'id': '27', 'type': 'return_statement', 'children': ['28']}; {'id': '28', 'type': 'call', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'string', 'children': [], 'value': "'{0} {1}'"}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '32', 'type': 'argument_list', 'children': ['33', '40']}, {'id': '33', 'type': 'call', 'children': ['34', '39']}; {'id': '34', 'type': 'attribute', 'children': ['35', '38']}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'field'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'get_identifier'}, {'id': '39', 'type': 'argument_list', 'children': []}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'direction'}, {'id': '41', 'type': 'return_statement', 'children': ['42']}; {'id': '42', 'type': 'call', 'children': ['43', '46']}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'string', 'children': [], 'value': "'{0} {1}'"}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '46', 'type': 'argument_list', 'children': ['47', '54']}, {'id': '47', 'type': 'call', 'children': ['48', '53']}; {'id': '48', 'type': 'attribute', 'children': ['49', '52']}, {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'field'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'get_select_sql'}, {'id': '53', 'type': 'argument_list', 'children': []} | def get_name(self, use_alias=True):
if self.desc:
direction = 'DESC'
else:
direction = 'ASC'
if use_alias:
return '{0} {1}'.format(self.field.get_identifier(), direction)
return '{0} {1}'.format(self.field.get_select_sql(), direction) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'order_by'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'field'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'table'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'desc'}, {'id': '13', 'type': 'False', 'children': []}; {'id': '14', 'type': 'block', 'children': ['15', '35']}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'call', 'children': ['17', '22']}, {'id': '17', 'type': 'attribute', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'sorters'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}, {'id': '23', 'type': 'call', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'Sorter'}, {'id': '25', 'type': 'argument_list', 'children': ['26', '29', '32']}; {'id': '26', 'type': 'keyword_argument', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'field'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'field'}, {'id': '29', 'type': 'keyword_argument', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'table'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'table'}; {'id': '32', 'type': 'keyword_argument', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'desc'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'desc'}, {'id': '35', 'type': 'return_statement', 'children': ['36']} | def order_by(self, field=None, table=None, desc=False):
self.sorters.append(Sorter(
field=field,
table=table,
desc=desc
))
return self |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_by_tag'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'tag'}; {'id': '6', 'type': 'block', 'children': ['7']}, {'id': '7', 'type': 'return_statement', 'children': ['8']}; {'id': '8', 'type': 'call', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'AmpalContainer'}; {'id': '10', 'type': 'argument_list', 'children': ['11']}, {'id': '11', 'type': 'call', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '13', 'type': 'argument_list', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '15', 'type': 'keyword_argument', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '17', 'type': 'lambda', 'children': ['18', '20']}; {'id': '18', 'type': 'lambda_parameters', 'children': ['19']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '20', 'type': 'subscript', 'children': ['21', '24']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'tags'} | def sort_by_tag(self, tag):
return AmpalContainer(sorted(self, key=lambda x: x.tags[tag])) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'fit_heptad_register'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'crangles'}, {'id': '5', 'type': 'block', 'children': ['6', '21', '45', '70', '79', '88', '92', '146']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'crangles'}, {'id': '9', 'type': 'list_comprehension', 'children': ['10', '18']}; {'id': '10', 'type': 'conditional_expression', 'children': ['11', '12', '15'], 'value': 'if'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '12', 'type': 'comparison_operator', 'children': ['13', '14'], 'value': '>'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '14', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '15', 'type': 'binary_operator', 'children': ['16', '17'], 'value': '+'}; {'id': '16', 'type': 'integer', 'children': [], 'value': '360'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '18', 'type': 'for_in_clause', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'crangles'}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'hept_p'}; {'id': '24', 'type': 'list_comprehension', 'children': ['25', '39']}, {'id': '25', 'type': 'binary_operator', 'children': ['26', '32'], 'value': '+'}; {'id': '26', 'type': 'binary_operator', 'children': ['27', '28'], 'value': '*'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '28', 'type': 'parenthesized_expression', 'children': ['29'], 'value': '()'}, {'id': '29', 'type': 'binary_operator', 'children': ['30', '31'], 'value': '/'}; {'id': '30', 'type': 'float', 'children': [], 'value': '360.0'}, {'id': '31', 'type': 'float', 'children': [], 'value': '7.0'}; {'id': '32', 'type': 'parenthesized_expression', 'children': ['33'], 'value': '()'}, {'id': '33', 'type': 'binary_operator', 'children': ['34', '38'], 'value': '/'}; {'id': '34', 'type': 'parenthesized_expression', 'children': ['35'], 'value': '()'}, {'id': '35', 'type': 'binary_operator', 'children': ['36', '37'], 'value': '/'}; {'id': '36', 'type': 'float', 'children': [], 'value': '360.0'}, {'id': '37', 'type': 'float', 'children': [], 'value': '7.0'}; {'id': '38', 'type': 'float', 'children': [], 'value': '2.0'}, {'id': '39', 'type': 'for_in_clause', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '41', 'type': 'call', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '43', 'type': 'argument_list', 'children': ['44']}; {'id': '44', 'type': 'integer', 'children': [], 'value': '7'}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'ideal_crangs'}; {'id': '48', 'type': 'list', 'children': ['49', '52', '55', '58', '61', '64', '67'], 'value': '[\n hept_p[0],\n hept_p[2],\n hept_p[4],\n hept_p[6],\n hept_p[1],\n hept_p[3],\n hept_p[5]\n ]'}, {'id': '49', 'type': 'subscript', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'hept_p'}, {'id': '51', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '52', 'type': 'subscript', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'hept_p'}; {'id': '54', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '55', 'type': 'subscript', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'hept_p'}, {'id': '57', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '58', 'type': 'subscript', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'hept_p'}; {'id': '60', 'type': 'integer', 'children': [], 'value': '6'}, {'id': '61', 'type': 'subscript', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'hept_p'}, {'id': '63', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '64', 'type': 'subscript', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'hept_p'}; {'id': '66', 'type': 'integer', 'children': [], 'value': '3'}, {'id': '67', 'type': 'subscript', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'hept_p'}, {'id': '69', 'type': 'integer', 'children': [], 'value': '5'}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'assignment', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'full_hept'}, {'id': '73', 'type': 'binary_operator', 'children': ['74', '78'], 'value': '//'}; {'id': '74', 'type': 'call', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'crangles'}; {'id': '78', 'type': 'integer', 'children': [], 'value': '7'}, {'id': '79', 'type': 'expression_statement', 'children': ['80']}; {'id': '80', 'type': 'assignment', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'ideal_crang_list'}; {'id': '82', 'type': 'binary_operator', 'children': ['83', '84'], 'value': '*'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'ideal_crangs'}; {'id': '84', 'type': 'parenthesized_expression', 'children': ['85'], 'value': '()'}, {'id': '85', 'type': 'binary_operator', 'children': ['86', '87'], 'value': '+'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'full_hept'}, {'id': '87', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '88', 'type': 'expression_statement', 'children': ['89']}, {'id': '89', 'type': 'assignment', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'fitting'}, {'id': '91', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '92', 'type': 'for_statement', 'children': ['93', '94', '98']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '94', 'type': 'call', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '96', 'type': 'argument_list', 'children': ['97']}, {'id': '97', 'type': 'integer', 'children': [], 'value': '7'}; {'id': '98', 'type': 'block', 'children': ['99', '111', '126']}, {'id': '99', 'type': 'expression_statement', 'children': ['100']}; {'id': '100', 'type': 'assignment', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'ang_pairs'}; {'id': '102', 'type': 'call', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'zip'}; {'id': '104', 'type': 'argument_list', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'crangles'}; {'id': '106', 'type': 'subscript', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'ideal_crang_list'}; {'id': '108', 'type': 'slice', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '110', 'type': 'colon', 'children': []}, {'id': '111', 'type': 'expression_statement', 'children': ['112']}; {'id': '112', 'type': 'assignment', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'ang_diffs'}; {'id': '114', 'type': 'list_comprehension', 'children': ['115', '121']}, {'id': '115', 'type': 'call', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'abs'}, {'id': '117', 'type': 'argument_list', 'children': ['118']}; {'id': '118', 'type': 'binary_operator', 'children': ['119', '120'], 'value': '-'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '121', 'type': 'for_in_clause', 'children': ['122', '125']}; {'id': '122', 'type': 'pattern_list', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'ang_pairs'}; {'id': '126', 'type': 'expression_statement', 'children': ['127']}, {'id': '127', 'type': 'call', 'children': ['128', '131']}; {'id': '128', 'type': 'attribute', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'fitting'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '131', 'type': 'argument_list', 'children': ['132']}; {'id': '132', 'type': 'tuple', 'children': ['133', '134', '140']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '134', 'type': 'call', 'children': ['135', '138']}, {'id': '135', 'type': 'attribute', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'numpy'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'mean'}; {'id': '138', 'type': 'argument_list', 'children': ['139']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'ang_diffs'}; {'id': '140', 'type': 'call', 'children': ['141', '144']}, {'id': '141', 'type': 'attribute', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'numpy'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'std'}; {'id': '144', 'type': 'argument_list', 'children': ['145']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'ang_diffs'}; {'id': '146', 'type': 'return_statement', 'children': ['147']}, {'id': '147', 'type': 'call', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '149', 'type': 'argument_list', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'fitting'}, {'id': '151', 'type': 'keyword_argument', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '153', 'type': 'lambda', 'children': ['154', '156']}; {'id': '154', 'type': 'lambda_parameters', 'children': ['155']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '156', 'type': 'subscript', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'x'} | def fit_heptad_register(crangles):
crangles = [x if x > 0 else 360 + x for x in crangles]
hept_p = [x * (360.0 / 7.0) + ((360.0 / 7.0) / 2.0) for x in range(7)]
ideal_crangs = [
hept_p[0],
hept_p[2],
hept_p[4],
hept_p[6],
hept_p[1],
hept_p[3],
hept_p[5]
]
full_hept = len(crangles) // 7
ideal_crang_list = ideal_crangs * (full_hept + 2)
fitting = []
for i in range(7):
ang_pairs = zip(crangles, ideal_crang_list[i:])
ang_diffs = [abs(y - x) for x, y in ang_pairs]
fitting.append((i, numpy.mean(ang_diffs), numpy.std(ang_diffs)))
return sorted(fitting, key=lambda x: x[1]) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'simplify'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '13', '27', '37', '45', '53', '66', '70', '88', '100', '128', '146', '150', '376', '385', '397', '403', '413', '419']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '10']}, {'id': '7', 'type': 'attribute', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'iscanonical'}; {'id': '10', 'type': 'block', 'children': ['11']}, {'id': '11', 'type': 'return_statement', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '16', 'type': 'list_comprehension', 'children': ['17', '22']}, {'id': '17', 'type': 'call', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'simplify'}, {'id': '21', 'type': 'argument_list', 'children': []}; {'id': '22', 'type': 'for_in_clause', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'expr'}; {'id': '30', 'type': 'call', 'children': ['31', '34']}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': '__class__'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}, {'id': '35', 'type': 'list_splat', 'children': ['36']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'assignment', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'expr'}; {'id': '40', 'type': 'call', 'children': ['41', '44']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'literalize'}; {'id': '44', 'type': 'argument_list', 'children': []}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'expr'}; {'id': '48', 'type': 'call', 'children': ['49', '52']}, {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'flatten'}; {'id': '52', 'type': 'argument_list', 'children': []}, {'id': '53', 'type': 'if_statement', 'children': ['54', '61']}; {'id': '54', 'type': 'comparison_operator', 'children': ['55', '58'], 'value': 'in'}, {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'annihilator'}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'expr'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '61', 'type': 'block', 'children': ['62']}; {'id': '62', 'type': 'return_statement', 'children': ['63']}, {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'annihilator'}; {'id': '66', 'type': 'expression_statement', 'children': ['67']}, {'id': '67', 'type': 'assignment', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '69', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '70', 'type': 'for_statement', 'children': ['71', '72', '75']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'expr'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '75', 'type': 'block', 'children': ['76']}; {'id': '76', 'type': 'if_statement', 'children': ['77', '80']}, {'id': '77', 'type': 'comparison_operator', 'children': ['78', '79'], 'value': 'not'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'arg'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '80', 'type': 'block', 'children': ['81']}, {'id': '81', 'type': 'expression_statement', 'children': ['82']}; {'id': '82', 'type': 'call', 'children': ['83', '86']}, {'id': '83', 'type': 'attribute', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '86', 'type': 'argument_list', 'children': ['87']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '88', 'type': 'if_statement', 'children': ['89', '95']}, {'id': '89', 'type': 'comparison_operator', 'children': ['90', '94'], 'value': '=='}; {'id': '90', 'type': 'call', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '94', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '95', 'type': 'block', 'children': ['96']}; {'id': '96', 'type': 'return_statement', 'children': ['97']}, {'id': '97', 'type': 'subscript', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '99', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '100', 'type': 'if_statement', 'children': ['101', '106']}, {'id': '101', 'type': 'comparison_operator', 'children': ['102', '105'], 'value': 'in'}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'identity'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '106', 'type': 'block', 'children': ['107', '116']}, {'id': '107', 'type': 'expression_statement', 'children': ['108']}; {'id': '108', 'type': 'call', 'children': ['109', '112']}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'remove'}; {'id': '112', 'type': 'argument_list', 'children': ['113']}, {'id': '113', 'type': 'attribute', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'identity'}; {'id': '116', 'type': 'if_statement', 'children': ['117', '123']}, {'id': '117', 'type': 'comparison_operator', 'children': ['118', '122'], 'value': '=='}; {'id': '118', 'type': 'call', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '120', 'type': 'argument_list', 'children': ['121']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '122', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '123', 'type': 'block', 'children': ['124']}; {'id': '124', 'type': 'return_statement', 'children': ['125']}, {'id': '125', 'type': 'subscript', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '127', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '128', 'type': 'for_statement', 'children': ['129', '130', '131']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '131', 'type': 'block', 'children': ['132']}; {'id': '132', 'type': 'if_statement', 'children': ['133', '141']}, {'id': '133', 'type': 'comparison_operator', 'children': ['134', '140'], 'value': 'in'}; {'id': '134', 'type': 'call', 'children': ['135', '138']}, {'id': '135', 'type': 'attribute', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'NOT'}; {'id': '138', 'type': 'argument_list', 'children': ['139']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '141', 'type': 'block', 'children': ['142']}; {'id': '142', 'type': 'return_statement', 'children': ['143']}, {'id': '143', 'type': 'attribute', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'annihilator'}; {'id': '146', 'type': 'expression_statement', 'children': ['147']}, {'id': '147', 'type': 'assignment', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '149', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '150', 'type': 'while_statement', 'children': ['151', '159']}, {'id': '151', 'type': 'comparison_operator', 'children': ['152', '153'], 'value': '<'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '153', 'type': 'binary_operator', 'children': ['154', '158'], 'value': '-'}; {'id': '154', 'type': 'call', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '156', 'type': 'argument_list', 'children': ['157']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '158', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '159', 'type': 'block', 'children': ['160', '166', '172', '187', '372']}; {'id': '160', 'type': 'expression_statement', 'children': ['161']}, {'id': '161', 'type': 'assignment', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '163', 'type': 'binary_operator', 'children': ['164', '165'], 'value': '+'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '165', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '166', 'type': 'expression_statement', 'children': ['167']}, {'id': '167', 'type': 'assignment', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'ai'}, {'id': '169', 'type': 'subscript', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '172', 'type': 'if_statement', 'children': ['173', '181']}, {'id': '173', 'type': 'not_operator', 'children': ['174']}; {'id': '174', 'type': 'call', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '176', 'type': 'argument_list', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'ai'}; {'id': '178', 'type': 'attribute', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'dual'}, {'id': '181', 'type': 'block', 'children': ['182', '186']}; {'id': '182', 'type': 'expression_statement', 'children': ['183']}, {'id': '183', 'type': 'augmented_assignment', 'children': ['184', '185'], 'value': '+='}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '185', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '186', 'type': 'continue_statement', 'children': []}, {'id': '187', 'type': 'while_statement', 'children': ['188', '194']}; {'id': '188', 'type': 'comparison_operator', 'children': ['189', '190'], 'value': '<'}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '190', 'type': 'call', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '192', 'type': 'argument_list', 'children': ['193']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '194', 'type': 'block', 'children': ['195', '201', '230', '234', '287', '368']}, {'id': '195', 'type': 'expression_statement', 'children': ['196']}; {'id': '196', 'type': 'assignment', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'aj'}; {'id': '198', 'type': 'subscript', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '201', 'type': 'if_statement', 'children': ['202', '224']}; {'id': '202', 'type': 'boolean_operator', 'children': ['203', '211'], 'value': 'or'}, {'id': '203', 'type': 'not_operator', 'children': ['204']}; {'id': '204', 'type': 'call', 'children': ['205', '206']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '206', 'type': 'argument_list', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'aj'}; {'id': '208', 'type': 'attribute', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'dual'}, {'id': '211', 'type': 'comparison_operator', 'children': ['212', '218'], 'value': '!='}; {'id': '212', 'type': 'call', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '214', 'type': 'argument_list', 'children': ['215']}, {'id': '215', 'type': 'attribute', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'ai'}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '218', 'type': 'call', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '220', 'type': 'argument_list', 'children': ['221']}, {'id': '221', 'type': 'attribute', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'aj'}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '224', 'type': 'block', 'children': ['225', '229']}, {'id': '225', 'type': 'expression_statement', 'children': ['226']}; {'id': '226', 'type': 'augmented_assignment', 'children': ['227', '228'], 'value': '+='}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '228', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '229', 'type': 'continue_statement', 'children': []}; {'id': '230', 'type': 'expression_statement', 'children': ['231']}, {'id': '231', 'type': 'assignment', 'children': ['232', '233']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'negated'}, {'id': '233', 'type': 'None', 'children': []}; {'id': '234', 'type': 'for_statement', 'children': ['235', '236', '239']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '236', 'type': 'attribute', 'children': ['237', '238']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'ai'}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '239', 'type': 'block', 'children': ['240']}; {'id': '240', 'type': 'if_statement', 'children': ['241', '246', '248', '280']}, {'id': '241', 'type': 'comparison_operator', 'children': ['242', '243'], 'value': 'in'}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'arg'}, {'id': '243', 'type': 'attribute', 'children': ['244', '245']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'aj'}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '246', 'type': 'block', 'children': ['247']}, {'id': '247', 'type': 'pass_statement', 'children': []}; {'id': '248', 'type': 'elif_clause', 'children': ['249', '263']}, {'id': '249', 'type': 'comparison_operator', 'children': ['250', '260'], 'value': 'in'}; {'id': '250', 'type': 'call', 'children': ['251', '259']}, {'id': '251', 'type': 'attribute', 'children': ['252', '258']}; {'id': '252', 'type': 'call', 'children': ['253', '256']}, {'id': '253', 'type': 'attribute', 'children': ['254', '255']}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'NOT'}; {'id': '256', 'type': 'argument_list', 'children': ['257']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'cancel'}, {'id': '259', 'type': 'argument_list', 'children': []}; {'id': '260', 'type': 'attribute', 'children': ['261', '262']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'aj'}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '263', 'type': 'block', 'children': ['264']}; {'id': '264', 'type': 'if_statement', 'children': ['265', '268', '273']}, {'id': '265', 'type': 'comparison_operator', 'children': ['266', '267'], 'value': 'is'}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'negated'}, {'id': '267', 'type': 'None', 'children': []}; {'id': '268', 'type': 'block', 'children': ['269']}, {'id': '269', 'type': 'expression_statement', 'children': ['270']}; {'id': '270', 'type': 'assignment', 'children': ['271', '272']}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'negated'}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'arg'}, {'id': '273', 'type': 'else_clause', 'children': ['274']}; {'id': '274', 'type': 'block', 'children': ['275', '279']}, {'id': '275', 'type': 'expression_statement', 'children': ['276']}; {'id': '276', 'type': 'assignment', 'children': ['277', '278']}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'negated'}; {'id': '278', 'type': 'None', 'children': []}, {'id': '279', 'type': 'break_statement', 'children': []}; {'id': '280', 'type': 'else_clause', 'children': ['281']}, {'id': '281', 'type': 'block', 'children': ['282', '286']}; {'id': '282', 'type': 'expression_statement', 'children': ['283']}, {'id': '283', 'type': 'assignment', 'children': ['284', '285']}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'negated'}, {'id': '285', 'type': 'None', 'children': []}; {'id': '286', 'type': 'break_statement', 'children': []}, {'id': '287', 'type': 'if_statement', 'children': ['288', '291']}; {'id': '288', 'type': 'comparison_operator', 'children': ['289', '290'], 'value': 'is'}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'negated'}; {'id': '290', 'type': 'None', 'children': []}, {'id': '291', 'type': 'block', 'children': ['292', '296', '305', '312', '342']}; {'id': '292', 'type': 'delete_statement', 'children': ['293']}, {'id': '293', 'type': 'subscript', 'children': ['294', '295']}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '296', 'type': 'expression_statement', 'children': ['297']}, {'id': '297', 'type': 'assignment', 'children': ['298', '299']}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'aiargs'}, {'id': '299', 'type': 'call', 'children': ['300', '301']}; {'id': '300', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '301', 'type': 'argument_list', 'children': ['302']}; {'id': '302', 'type': 'attribute', 'children': ['303', '304']}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'ai'}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '305', 'type': 'expression_statement', 'children': ['306']}; {'id': '306', 'type': 'call', 'children': ['307', '310']}, {'id': '307', 'type': 'attribute', 'children': ['308', '309']}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'aiargs'}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'remove'}; {'id': '310', 'type': 'argument_list', 'children': ['311']}, {'id': '311', 'type': 'identifier', 'children': [], 'value': 'negated'}; {'id': '312', 'type': 'if_statement', 'children': ['313', '319', '328']}, {'id': '313', 'type': 'comparison_operator', 'children': ['314', '318'], 'value': '=='}; {'id': '314', 'type': 'call', 'children': ['315', '316']}, {'id': '315', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '316', 'type': 'argument_list', 'children': ['317']}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'aiargs'}; {'id': '318', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '319', 'type': 'block', 'children': ['320']}; {'id': '320', 'type': 'expression_statement', 'children': ['321']}, {'id': '321', 'type': 'assignment', 'children': ['322', '325']}; {'id': '322', 'type': 'subscript', 'children': ['323', '324']}, {'id': '323', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '324', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '325', 'type': 'subscript', 'children': ['326', '327']}; {'id': '326', 'type': 'identifier', 'children': [], 'value': 'aiargs'}, {'id': '327', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '328', 'type': 'else_clause', 'children': ['329']}, {'id': '329', 'type': 'block', 'children': ['330']}; {'id': '330', 'type': 'expression_statement', 'children': ['331']}, {'id': '331', 'type': 'assignment', 'children': ['332', '335']}; {'id': '332', 'type': 'subscript', 'children': ['333', '334']}, {'id': '333', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '334', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '335', 'type': 'call', 'children': ['336', '339']}; {'id': '336', 'type': 'attribute', 'children': ['337', '338']}, {'id': '337', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '338', 'type': 'identifier', 'children': [], 'value': 'dual'}, {'id': '339', 'type': 'argument_list', 'children': ['340']}; {'id': '340', 'type': 'list_splat', 'children': ['341']}, {'id': '341', 'type': 'identifier', 'children': [], 'value': 'aiargs'}; {'id': '342', 'type': 'if_statement', 'children': ['343', '349', '354']}, {'id': '343', 'type': 'comparison_operator', 'children': ['344', '348'], 'value': '=='}; {'id': '344', 'type': 'call', 'children': ['345', '346']}, {'id': '345', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '346', 'type': 'argument_list', 'children': ['347']}, {'id': '347', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '348', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '349', 'type': 'block', 'children': ['350']}; {'id': '350', 'type': 'return_statement', 'children': ['351']}, {'id': '351', 'type': 'subscript', 'children': ['352', '353']}; {'id': '352', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '353', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '354', 'type': 'else_clause', 'children': ['355']}, {'id': '355', 'type': 'block', 'children': ['356']}; {'id': '356', 'type': 'return_statement', 'children': ['357']}, {'id': '357', 'type': 'call', 'children': ['358', '367']}; {'id': '358', 'type': 'attribute', 'children': ['359', '366']}, {'id': '359', 'type': 'call', 'children': ['360', '363']}; {'id': '360', 'type': 'attribute', 'children': ['361', '362']}, {'id': '361', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '362', 'type': 'identifier', 'children': [], 'value': '__class__'}, {'id': '363', 'type': 'argument_list', 'children': ['364']}; {'id': '364', 'type': 'list_splat', 'children': ['365']}, {'id': '365', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '366', 'type': 'identifier', 'children': [], 'value': 'simplify'}, {'id': '367', 'type': 'argument_list', 'children': []}; {'id': '368', 'type': 'expression_statement', 'children': ['369']}, {'id': '369', 'type': 'augmented_assignment', 'children': ['370', '371'], 'value': '+='}; {'id': '370', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '371', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '372', 'type': 'expression_statement', 'children': ['373']}, {'id': '373', 'type': 'augmented_assignment', 'children': ['374', '375'], 'value': '+='}; {'id': '374', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '375', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '376', 'type': 'expression_statement', 'children': ['377']}, {'id': '377', 'type': 'assignment', 'children': ['378', '379']}; {'id': '378', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '379', 'type': 'call', 'children': ['380', '383']}; {'id': '380', 'type': 'attribute', 'children': ['381', '382']}, {'id': '381', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '382', 'type': 'identifier', 'children': [], 'value': 'absorb'}, {'id': '383', 'type': 'argument_list', 'children': ['384']}; {'id': '384', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '385', 'type': 'if_statement', 'children': ['386', '392']}; {'id': '386', 'type': 'comparison_operator', 'children': ['387', '391'], 'value': '=='}, {'id': '387', 'type': 'call', 'children': ['388', '389']}; {'id': '388', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '389', 'type': 'argument_list', 'children': ['390']}; {'id': '390', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '391', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '392', 'type': 'block', 'children': ['393']}, {'id': '393', 'type': 'return_statement', 'children': ['394']}; {'id': '394', 'type': 'subscript', 'children': ['395', '396']}, {'id': '395', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '396', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '397', 'type': 'expression_statement', 'children': ['398']}; {'id': '398', 'type': 'call', 'children': ['399', '402']}, {'id': '399', 'type': 'attribute', 'children': ['400', '401']}; {'id': '400', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '401', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '402', 'type': 'argument_list', 'children': []}, {'id': '403', 'type': 'expression_statement', 'children': ['404']}; {'id': '404', 'type': 'assignment', 'children': ['405', '406']}, {'id': '405', 'type': 'identifier', 'children': [], 'value': 'expr'}; {'id': '406', 'type': 'call', 'children': ['407', '410']}, {'id': '407', 'type': 'attribute', 'children': ['408', '409']}; {'id': '408', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '409', 'type': 'identifier', 'children': [], 'value': '__class__'}; {'id': '410', 'type': 'argument_list', 'children': ['411']}, {'id': '411', 'type': 'list_splat', 'children': ['412']}; {'id': '412', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '413', 'type': 'expression_statement', 'children': ['414']}; {'id': '414', 'type': 'assignment', 'children': ['415', '418']}, {'id': '415', 'type': 'attribute', 'children': ['416', '417']}; {'id': '416', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '417', 'type': 'identifier', 'children': [], 'value': 'iscanonical'}; {'id': '418', 'type': 'True', 'children': []}, {'id': '419', 'type': 'return_statement', 'children': ['420']} | def simplify(self):
if self.iscanonical:
return self
args = [arg.simplify() for arg in self.args]
expr = self.__class__(*args)
expr = expr.literalize()
expr = expr.flatten()
if self.annihilator in expr.args:
return self.annihilator
args = []
for arg in expr.args:
if arg not in args:
args.append(arg)
if len(args) == 1:
return args[0]
if self.identity in args:
args.remove(self.identity)
if len(args) == 1:
return args[0]
for arg in args:
if self.NOT(arg) in args:
return self.annihilator
i = 0
while i < len(args) - 1:
j = i + 1
ai = args[i]
if not isinstance(ai, self.dual):
i += 1
continue
while j < len(args):
aj = args[j]
if not isinstance(aj, self.dual) or len(ai.args) != len(aj.args):
j += 1
continue
negated = None
for arg in ai.args:
if arg in aj.args:
pass
elif self.NOT(arg).cancel() in aj.args:
if negated is None:
negated = arg
else:
negated = None
break
else:
negated = None
break
if negated is not None:
del args[j]
aiargs = list(ai.args)
aiargs.remove(negated)
if len(aiargs) == 1:
args[i] = aiargs[0]
else:
args[i] = self.dual(*aiargs)
if len(args) == 1:
return args[0]
else:
return self.__class__(*args).simplify()
j += 1
i += 1
args = self.absorb(args)
if len(args) == 1:
return args[0]
args.sort()
expr = self.__class__(*args)
expr.iscanonical = True
return expr |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_recordAndPrintHeadline'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'test'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'error_class'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'artifact'}; {'id': '8', 'type': 'block', 'children': ['9', '13', '62', '83', '90', '104']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'is_error_class'}; {'id': '12', 'type': 'False', 'children': []}, {'id': '13', 'type': 'for_statement', 'children': ['14', '20', '27']}; {'id': '14', 'type': 'pattern_list', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '16', 'type': 'tuple_pattern', 'children': ['17', '18', '19']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'storage'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'label'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'is_failure'}; {'id': '20', 'type': 'call', 'children': ['21', '26']}, {'id': '21', 'type': 'attribute', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'errorClasses'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '26', 'type': 'argument_list', 'children': []}, {'id': '27', 'type': 'block', 'children': ['28']}; {'id': '28', 'type': 'if_statement', 'children': ['29', '39']}, {'id': '29', 'type': 'boolean_operator', 'children': ['30', '34'], 'value': 'and'}; {'id': '30', 'type': 'call', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'isclass'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'error_class'}; {'id': '34', 'type': 'call', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'issubclass'}; {'id': '36', 'type': 'argument_list', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'error_class'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '39', 'type': 'block', 'children': ['40', '49', '58']}; {'id': '40', 'type': 'if_statement', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'is_failure'}; {'id': '42', 'type': 'block', 'children': ['43']}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '48']}, {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'test'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'passed'}; {'id': '48', 'type': 'False', 'children': []}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'call', 'children': ['51', '54']}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'storage'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '54', 'type': 'argument_list', 'children': ['55']}, {'id': '55', 'type': 'tuple', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'test'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'artifact'}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'assignment', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'is_error_class'}, {'id': '61', 'type': 'True', 'children': []}; {'id': '62', 'type': 'if_statement', 'children': ['63', '65']}, {'id': '63', 'type': 'not_operator', 'children': ['64']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'is_error_class'}, {'id': '65', 'type': 'block', 'children': ['66', '77']}; {'id': '66', 'type': 'expression_statement', 'children': ['67']}, {'id': '67', 'type': 'call', 'children': ['68', '73']}; {'id': '68', 'type': 'attribute', 'children': ['69', '72']}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'errors'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '73', 'type': 'argument_list', 'children': ['74']}; {'id': '74', 'type': 'tuple', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'test'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'artifact'}, {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'assignment', 'children': ['79', '82']}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'test'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'passed'}; {'id': '82', 'type': 'False', 'children': []}, {'id': '83', 'type': 'expression_statement', 'children': ['84']}; {'id': '84', 'type': 'assignment', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'is_any_failure'}; {'id': '86', 'type': 'boolean_operator', 'children': ['87', '89'], 'value': 'or'}, {'id': '87', 'type': 'not_operator', 'children': ['88']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'is_error_class'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'is_failure'}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}, {'id': '91', 'type': 'call', 'children': ['92', '95']}; {'id': '92', 'type': 'attribute', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': '_printHeadline'}, {'id': '95', 'type': 'argument_list', 'children': ['96', '100', '101']}; {'id': '96', 'type': 'conditional_expression', 'children': ['97', '98', '99'], 'value': 'if'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'label'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'is_error_class'}, {'id': '99', 'type': 'string', 'children': [], 'value': "'ERROR'"}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'test'}, {'id': '101', 'type': 'keyword_argument', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'is_failure'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'is_any_failure'}; {'id': '104', 'type': 'return_statement', 'children': ['105']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'is_any_failure'} | def _recordAndPrintHeadline(self, test, error_class, artifact):
is_error_class = False
for cls, (storage, label, is_failure) in self.errorClasses.items():
if isclass(error_class) and issubclass(error_class, cls):
if is_failure:
test.passed = False
storage.append((test, artifact))
is_error_class = True
if not is_error_class:
self.errors.append((test, artifact))
test.passed = False
is_any_failure = not is_error_class or is_failure
self._printHeadline(label if is_error_class else 'ERROR',
test,
is_failure=is_any_failure)
return is_any_failure |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_decode_filename_to_unicode'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '5', 'type': 'block', 'children': ['6', '8', '19', '28']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'string', 'children': [], 'value': "'''Get bytestring filename and return unicode.\n First, try to decode from default file system encoding\n If that fails, use ``chardet`` module to guess encoding.\n As a last resort, try to decode as utf-8.\n If the argument already is unicode, return as is'''"}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'call', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '13', 'type': 'argument_list', 'children': ['14', '15']}; {'id': '14', 'type': 'string', 'children': [], 'value': "'_decode_filename_to_unicode(%s)'"}, {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'repr'}, {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '19', 'type': 'if_statement', 'children': ['20', '25']}; {'id': '20', 'type': 'call', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '22', 'type': 'argument_list', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'unicode'}, {'id': '25', 'type': 'block', 'children': ['26']}; {'id': '26', 'type': 'return_statement', 'children': ['27']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '28', 'type': 'try_statement', 'children': ['29', '41']}, {'id': '29', 'type': 'block', 'children': ['30']}; {'id': '30', 'type': 'return_statement', 'children': ['31']}, {'id': '31', 'type': 'call', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'decode'}, {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'call', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'getfilesystemencoding'}; {'id': '40', 'type': 'argument_list', 'children': []}, {'id': '41', 'type': 'except_clause', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'UnicodeDecodeError'}, {'id': '43', 'type': 'block', 'children': ['44', '53', '62', '84', '93', '101', '114', '122']}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'assignment', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'charguess'}, {'id': '47', 'type': 'call', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'chardet'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'detect'}, {'id': '51', 'type': 'argument_list', 'children': ['52']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'call', 'children': ['55', '58']}, {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '58', 'type': 'argument_list', 'children': ['59', '60', '61']}, {'id': '59', 'type': 'string', 'children': [], 'value': '"chardet filename: %r -> %r"'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'charguess'}; {'id': '62', 'type': 'if_statement', 'children': ['63', '68']}, {'id': '63', 'type': 'comparison_operator', 'children': ['64', '67'], 'value': 'is'}; {'id': '64', 'type': 'subscript', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'charguess'}; {'id': '66', 'type': 'string', 'children': [], 'value': "'encoding'"}, {'id': '67', 'type': 'None', 'children': []}; {'id': '68', 'type': 'block', 'children': ['69']}, {'id': '69', 'type': 'try_statement', 'children': ['70', '80']}; {'id': '70', 'type': 'block', 'children': ['71']}, {'id': '71', 'type': 'return_statement', 'children': ['72']}; {'id': '72', 'type': 'call', 'children': ['73', '76']}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'decode'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'subscript', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'charguess'}, {'id': '79', 'type': 'string', 'children': [], 'value': "'encoding'"}; {'id': '80', 'type': 'except_clause', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'UnicodeDecodeError'}; {'id': '82', 'type': 'block', 'children': ['83']}, {'id': '83', 'type': 'pass_statement', 'children': []}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}, {'id': '85', 'type': 'call', 'children': ['86', '89']}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'warning'}, {'id': '89', 'type': 'argument_list', 'children': ['90', '91', '92']}; {'id': '90', 'type': 'string', 'children': [], 'value': "'Cannot understand decoding of this filename: %r (guessed %r, but was wrong)'"}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'charguess'}, {'id': '93', 'type': 'expression_statement', 'children': ['94']}; {'id': '94', 'type': 'call', 'children': ['95', '98']}, {'id': '95', 'type': 'attribute', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '98', 'type': 'argument_list', 'children': ['99', '100']}, {'id': '99', 'type': 'string', 'children': [], 'value': "'Trying utf-8 to decode %r'"}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '101', 'type': 'try_statement', 'children': ['102', '110']}; {'id': '102', 'type': 'block', 'children': ['103']}, {'id': '103', 'type': 'return_statement', 'children': ['104']}; {'id': '104', 'type': 'call', 'children': ['105', '108']}, {'id': '105', 'type': 'attribute', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'decode'}; {'id': '108', 'type': 'argument_list', 'children': ['109']}, {'id': '109', 'type': 'string', 'children': [], 'value': "'utf-8'"}; {'id': '110', 'type': 'except_clause', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'UnicodeDecodeError'}; {'id': '112', 'type': 'block', 'children': ['113']}, {'id': '113', 'type': 'pass_statement', 'children': []}; {'id': '114', 'type': 'expression_statement', 'children': ['115']}, {'id': '115', 'type': 'call', 'children': ['116', '119']}; {'id': '116', 'type': 'attribute', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '119', 'type': 'argument_list', 'children': ['120', '121']}; {'id': '120', 'type': 'string', 'children': [], 'value': "'Trying latin1 to decode %r'"}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '122', 'type': 'try_statement', 'children': ['123', '131']}, {'id': '123', 'type': 'block', 'children': ['124']}; {'id': '124', 'type': 'return_statement', 'children': ['125']}, {'id': '125', 'type': 'call', 'children': ['126', '129']}; {'id': '126', 'type': 'attribute', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'decode'}, {'id': '129', 'type': 'argument_list', 'children': ['130']}; {'id': '130', 'type': 'string', 'children': [], 'value': "'latin1'"}, {'id': '131', 'type': 'except_clause', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'UnicodeDecodeError'}, {'id': '133', 'type': 'block', 'children': ['134', '142']}; {'id': '134', 'type': 'expression_statement', 'children': ['135']}, {'id': '135', 'type': 'call', 'children': ['136', '139']}; {'id': '136', 'type': 'attribute', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'warning'}, {'id': '139', 'type': 'argument_list', 'children': ['140', '141']}; {'id': '140', 'type': 'string', 'children': [], 'value': "'Exhausted all options. Decoding %r to safe ascii'"}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '142', 'type': 'return_statement', 'children': ['143']}, {'id': '143', 'type': 'call', 'children': ['144', '147']}; {'id': '144', 'type': 'attribute', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'decode'}, {'id': '147', 'type': 'argument_list', 'children': ['148', '149']}; {'id': '148', 'type': 'string', 'children': [], 'value': "'ascii'"}, {'id': '149', 'type': 'keyword_argument', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'errors'}, {'id': '151', 'type': 'string', 'children': [], 'value': "'ignore'"} | def _decode_filename_to_unicode(f):
'''Get bytestring filename and return unicode.
First, try to decode from default file system encoding
If that fails, use ``chardet`` module to guess encoding.
As a last resort, try to decode as utf-8.
If the argument already is unicode, return as is'''
log.debug('_decode_filename_to_unicode(%s)', repr(f))
if isinstance(f, unicode):
return f
try:
return f.decode(sys.getfilesystemencoding())
except UnicodeDecodeError:
charguess = chardet.detect(f)
log.debug("chardet filename: %r -> %r", f, charguess)
if charguess['encoding'] is not None:
try:
return f.decode(charguess['encoding'])
except UnicodeDecodeError:
pass
log.warning('Cannot understand decoding of this filename: %r (guessed %r, but was wrong)',
f, charguess)
log.debug('Trying utf-8 to decode %r', f)
try:
return f.decode('utf-8')
except UnicodeDecodeError:
pass
log.debug('Trying latin1 to decode %r', f)
try:
return f.decode('latin1')
except UnicodeDecodeError:
log.warning('Exhausted all options. Decoding %r to safe ascii', f)
return f.decode('ascii', errors='ignore') |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sortBy'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'val'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9']}, {'id': '9', 'type': 'if_statement', 'children': ['10', '13', '66']}; {'id': '10', 'type': 'comparison_operator', 'children': ['11', '12'], 'value': 'is'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '12', 'type': 'None', 'children': []}, {'id': '13', 'type': 'block', 'children': ['14']}; {'id': '14', 'type': 'if_statement', 'children': ['15', '23', '49']}, {'id': '15', 'type': 'call', 'children': ['16', '22']}; {'id': '16', 'type': 'attribute', 'children': ['17', '21']}, {'id': '17', 'type': 'call', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': '_'}, {'id': '19', 'type': 'argument_list', 'children': ['20']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'val'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'isString'}; {'id': '22', 'type': 'argument_list', 'children': []}, {'id': '23', 'type': 'block', 'children': ['24']}; {'id': '24', 'type': 'return_statement', 'children': ['25']}, {'id': '25', 'type': 'call', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': '_wrap'}, {'id': '29', 'type': 'argument_list', 'children': ['30']}; {'id': '30', 'type': 'call', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '32', 'type': 'argument_list', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '36', 'type': 'keyword_argument', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '38', 'type': 'lambda', 'children': ['39', '43']}, {'id': '39', 'type': 'lambda_parameters', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '41', 'type': 'list_splat_pattern', 'children': ['42']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '43', 'type': 'call', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '47', 'type': 'argument_list', 'children': ['48']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'val'}, {'id': '49', 'type': 'else_clause', 'children': ['50']}; {'id': '50', 'type': 'block', 'children': ['51']}, {'id': '51', 'type': 'return_statement', 'children': ['52']}; {'id': '52', 'type': 'call', 'children': ['53', '56']}, {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': '_wrap'}; {'id': '56', 'type': 'argument_list', 'children': ['57']}, {'id': '57', 'type': 'call', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '59', 'type': 'argument_list', 'children': ['60', '63']}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '63', 'type': 'keyword_argument', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '66', 'type': 'else_clause', 'children': ['67']}, {'id': '67', 'type': 'block', 'children': ['68']}; {'id': '68', 'type': 'return_statement', 'children': ['69']}, {'id': '69', 'type': 'call', 'children': ['70', '73']}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': '_wrap'}, {'id': '73', 'type': 'argument_list', 'children': ['74']}; {'id': '74', 'type': 'call', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'obj'} | def sortBy(self, val=None):
if val is not None:
if _(val).isString():
return self._wrap(sorted(self.obj, key=lambda x,
*args: x.get(val)))
else:
return self._wrap(sorted(self.obj, key=val))
else:
return self._wrap(sorted(self.obj)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sortedIndex'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'iterator'}; {'id': '8', 'type': 'lambda', 'children': ['9', '11']}, {'id': '9', 'type': 'lambda_parameters', 'children': ['10']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '12', 'type': 'block', 'children': ['13', '19', '26', '30', '37', '73']}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'array'}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '22', 'type': 'call', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'iterator'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'low'}, {'id': '29', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'assignment', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'high'}, {'id': '33', 'type': 'call', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'array'}, {'id': '37', 'type': 'while_statement', 'children': ['38', '41']}; {'id': '38', 'type': 'comparison_operator', 'children': ['39', '40'], 'value': '<'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'low'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'high'}, {'id': '41', 'type': 'block', 'children': ['42', '51']}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'mid'}, {'id': '45', 'type': 'binary_operator', 'children': ['46', '50'], 'value': '>>'}; {'id': '46', 'type': 'parenthesized_expression', 'children': ['47'], 'value': '()'}, {'id': '47', 'type': 'binary_operator', 'children': ['48', '49'], 'value': '+'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'low'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'high'}; {'id': '50', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '51', 'type': 'if_statement', 'children': ['52', '60', '67']}; {'id': '52', 'type': 'comparison_operator', 'children': ['53', '59'], 'value': '<'}, {'id': '53', 'type': 'call', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'iterator'}, {'id': '55', 'type': 'argument_list', 'children': ['56']}; {'id': '56', 'type': 'subscript', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'array'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'mid'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '60', 'type': 'block', 'children': ['61']}, {'id': '61', 'type': 'expression_statement', 'children': ['62']}; {'id': '62', 'type': 'assignment', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'low'}; {'id': '64', 'type': 'binary_operator', 'children': ['65', '66'], 'value': '+'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'mid'}; {'id': '66', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '67', 'type': 'else_clause', 'children': ['68']}; {'id': '68', 'type': 'block', 'children': ['69']}, {'id': '69', 'type': 'expression_statement', 'children': ['70']}; {'id': '70', 'type': 'assignment', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'high'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'mid'}, {'id': '73', 'type': 'return_statement', 'children': ['74']}; {'id': '74', 'type': 'call', 'children': ['75', '78']}, {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': '_wrap'}; {'id': '78', 'type': 'argument_list', 'children': ['79']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'low'} | def sortedIndex(self, obj, iterator=lambda x: x):
array = self.obj
value = iterator(obj)
low = 0
high = len(array)
while low < high:
mid = (low + high) >> 1
if iterator(array[mid]) < value:
low = mid + 1
else:
high = mid
return self._wrap(low) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'uniq'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'isSorted'}, {'id': '7', 'type': 'False', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'iterator'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'block', 'children': ['12', '20', '26', '34', '40', '59', '116', '126']}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'ns'}, {'id': '15', 'type': 'call', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'Namespace'}, {'id': '19', 'type': 'argument_list', 'children': []}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'ns'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'results'}, {'id': '25', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'assignment', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'ns'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'array'}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'assignment', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'initial'}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '40', 'type': 'if_statement', 'children': ['41', '44']}, {'id': '41', 'type': 'comparison_operator', 'children': ['42', '43'], 'value': 'is'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'iterator'}, {'id': '43', 'type': 'None', 'children': []}; {'id': '44', 'type': 'block', 'children': ['45']}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'initial'}; {'id': '48', 'type': 'call', 'children': ['49', '57']}, {'id': '49', 'type': 'attribute', 'children': ['50', '56']}; {'id': '50', 'type': 'call', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '52', 'type': 'argument_list', 'children': ['53']}, {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'ns'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'array'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'map'}, {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'iterator'}, {'id': '59', 'type': 'function_definition', 'children': ['60', '61', '65']}; {'id': '60', 'type': 'function_name', 'children': [], 'value': 'by'}, {'id': '61', 'type': 'parameters', 'children': ['62', '63', '64']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'memo'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '65', 'type': 'block', 'children': ['66', '114']}; {'id': '66', 'type': 'if_statement', 'children': ['67', '93']}, {'id': '67', 'type': 'parenthesized_expression', 'children': ['68'], 'value': '()'}; {'id': '68', 'type': 'conditional_expression', 'children': ['69', '84', '85'], 'value': 'if'}, {'id': '69', 'type': 'parenthesized_expression', 'children': ['70'], 'value': '()'}; {'id': '70', 'type': 'boolean_operator', 'children': ['71', '79'], 'value': 'or'}, {'id': '71', 'type': 'comparison_operator', 'children': ['72', '78'], 'value': '!='}; {'id': '72', 'type': 'call', 'children': ['73', '76']}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': '_'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'last'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'memo'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '79', 'type': 'not_operator', 'children': ['80']}; {'id': '80', 'type': 'call', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '82', 'type': 'argument_list', 'children': ['83']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'memo'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'isSorted'}, {'id': '85', 'type': 'not_operator', 'children': ['86']}; {'id': '86', 'type': 'call', 'children': ['87', '90']}, {'id': '87', 'type': 'attribute', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': '_'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'include'}; {'id': '90', 'type': 'argument_list', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'memo'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '93', 'type': 'block', 'children': ['94', '101']}; {'id': '94', 'type': 'expression_statement', 'children': ['95']}, {'id': '95', 'type': 'call', 'children': ['96', '99']}; {'id': '96', 'type': 'attribute', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'memo'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '99', 'type': 'argument_list', 'children': ['100']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '101', 'type': 'expression_statement', 'children': ['102']}; {'id': '102', 'type': 'call', 'children': ['103', '108']}, {'id': '103', 'type': 'attribute', 'children': ['104', '107']}; {'id': '104', 'type': 'attribute', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'ns'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'results'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '108', 'type': 'argument_list', 'children': ['109']}, {'id': '109', 'type': 'subscript', 'children': ['110', '113']}; {'id': '110', 'type': 'attribute', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'ns'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'array'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '114', 'type': 'return_statement', 'children': ['115']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'memo'}; {'id': '116', 'type': 'expression_statement', 'children': ['117']}, {'id': '117', 'type': 'assignment', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'ret'}, {'id': '119', 'type': 'call', 'children': ['120', '123']}; {'id': '120', 'type': 'attribute', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'reduce'}, {'id': '123', 'type': 'argument_list', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'initial'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'by'}; {'id': '126', 'type': 'return_statement', 'children': ['127']}, {'id': '127', 'type': 'call', 'children': ['128', '131']}; {'id': '128', 'type': 'attribute', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': '_wrap'}, {'id': '131', 'type': 'argument_list', 'children': ['132']} | def uniq(self, isSorted=False, iterator=None):
ns = self.Namespace()
ns.results = []
ns.array = self.obj
initial = self.obj
if iterator is not None:
initial = _(ns.array).map(iterator)
def by(memo, value, index):
if ((_.last(memo) != value or
not len(memo)) if isSorted else not _.include(memo, value)):
memo.append(value)
ns.results.append(ns.array[index])
return memo
ret = _.reduce(initial, by)
return self._wrap(ret) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'functions'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '10', '42']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'names'}, {'id': '9', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '10', 'type': 'for_statement', 'children': ['11', '14', '20']}, {'id': '11', 'type': 'pattern_list', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '14', 'type': 'call', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '20', 'type': 'block', 'children': ['21']}, {'id': '21', 'type': 'if_statement', 'children': ['22', '34']}; {'id': '22', 'type': 'call', 'children': ['23', '33']}, {'id': '23', 'type': 'attribute', 'children': ['24', '32']}; {'id': '24', 'type': 'call', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}, {'id': '27', 'type': 'subscript', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'isCallable'}, {'id': '33', 'type': 'argument_list', 'children': []}; {'id': '34', 'type': 'block', 'children': ['35']}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'call', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'names'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '40', 'type': 'argument_list', 'children': ['41']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '42', 'type': 'return_statement', 'children': ['43']}, {'id': '43', 'type': 'call', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': '_wrap'}, {'id': '47', 'type': 'argument_list', 'children': ['48']}; {'id': '48', 'type': 'call', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '50', 'type': 'argument_list', 'children': ['51']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'names'} | def functions(self):
names = []
for i, k in enumerate(self.obj):
if _(self.obj[k]).isCallable():
names.append(k)
return self._wrap(sorted(names)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'createMSBWTFromBam'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'bamFNs'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'outputDir'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'numProcs'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'areUniform'}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'logger'}, {'id': '9', 'type': 'block', 'children': ['10', '12', '19', '25', '31', '37', '43', '50', '60']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}, {'id': '11', 'type': 'string', 'children': [], 'value': "'''\n This function takes a fasta filename and creates the BWT using the technique from Cox and Bauer\n @param bamFNs - a list of BAM filenames to extract sequences from, READS MUST BE SORTED BY NAME\n @param outputDir - the directory for all of the bwt related data\n @param numProcs - the number of processes it's allowed to use\n @areUniform - true if all the sequences passed into the function are of equal length\n '''"}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'call', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'info'}, {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'string', 'children': [], 'value': "'Saving sorted sequences...'"}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'seqFN'}; {'id': '22', 'type': 'binary_operator', 'children': ['23', '24'], 'value': '+'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'outputDir'}; {'id': '24', 'type': 'string', 'children': [], 'value': "'/seqs.npy'"}, {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'offsetFN'}; {'id': '28', 'type': 'binary_operator', 'children': ['29', '30'], 'value': '+'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'outputDir'}; {'id': '30', 'type': 'string', 'children': [], 'value': "'/offsets.npy'"}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'abtFN'}; {'id': '34', 'type': 'binary_operator', 'children': ['35', '36'], 'value': '+'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'outputDir'}; {'id': '36', 'type': 'string', 'children': [], 'value': "'/about.npy'"}, {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'assignment', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'bwtFN'}; {'id': '40', 'type': 'binary_operator', 'children': ['41', '42'], 'value': '+'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'outputDir'}; {'id': '42', 'type': 'string', 'children': [], 'value': "'/msbwt.npy'"}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'call', 'children': ['45', '48']}, {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'MSBWTGen'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'clearAuxiliaryData'}; {'id': '48', 'type': 'argument_list', 'children': ['49']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'outputDir'}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'call', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'preprocessBams'}, {'id': '53', 'type': 'argument_list', 'children': ['54', '55', '56', '57', '58', '59']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'bamFNs'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'seqFN'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'offsetFN'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'abtFN'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'areUniform'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'call', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'MSBWTGen'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'createFromSeqs'}, {'id': '65', 'type': 'argument_list', 'children': ['66', '67', '68', '69', '70', '71']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'seqFN'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'offsetFN'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'bwtFN'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'numProcs'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'areUniform'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'logger'} | def createMSBWTFromBam(bamFNs, outputDir, numProcs, areUniform, logger):
'''
This function takes a fasta filename and creates the BWT using the technique from Cox and Bauer
@param bamFNs - a list of BAM filenames to extract sequences from, READS MUST BE SORTED BY NAME
@param outputDir - the directory for all of the bwt related data
@param numProcs - the number of processes it's allowed to use
@areUniform - true if all the sequences passed into the function are of equal length
'''
logger.info('Saving sorted sequences...')
seqFN = outputDir+'/seqs.npy'
offsetFN = outputDir+'/offsets.npy'
abtFN = outputDir+'/about.npy'
bwtFN = outputDir+'/msbwt.npy'
MSBWTGen.clearAuxiliaryData(outputDir)
preprocessBams(bamFNs, seqFN, offsetFN, abtFN, areUniform, logger)
MSBWTGen.createFromSeqs(seqFN, offsetFN, bwtFN, numProcs, areUniform, logger) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'append_responder'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'matcher'}; {'id': '6', 'type': 'list_splat_pattern', 'children': ['7']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '8', 'type': 'dictionary_splat_pattern', 'children': ['9']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '10', 'type': 'block', 'children': ['11']}, {'id': '11', 'type': 'return_statement', 'children': ['12']}; {'id': '12', 'type': 'call', 'children': ['13', '16']}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': '_insert_responder'}; {'id': '16', 'type': 'argument_list', 'children': ['17', '18', '19', '21']}, {'id': '17', 'type': 'string', 'children': [], 'value': '"bottom"'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'matcher'}, {'id': '19', 'type': 'list_splat', 'children': ['20']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '21', 'type': 'dictionary_splat', 'children': ['22']} | def append_responder(self, matcher, *args, **kwargs):
return self._insert_responder("bottom", matcher, *args, **kwargs) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'unique_list_dicts'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'dlist'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '6', 'type': 'block', 'children': ['7']}, {'id': '7', 'type': 'return_statement', 'children': ['8']}; {'id': '8', 'type': 'call', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '10', 'type': 'argument_list', 'children': ['11']}, {'id': '11', 'type': 'call', 'children': ['12', '25']}; {'id': '12', 'type': 'attribute', 'children': ['13', '24']}, {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'dict'}, {'id': '15', 'type': 'generator_expression', 'children': ['16', '21']}; {'id': '16', 'type': 'tuple', 'children': ['17', '20']}, {'id': '17', 'type': 'subscript', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'val'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'val'}, {'id': '21', 'type': 'for_in_clause', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'val'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'dlist'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '25', 'type': 'argument_list', 'children': []} | def unique_list_dicts(dlist, key):
return list(dict((val[key], val) for val in dlist).values()) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_get_bmu'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'activations'}; {'id': '6', 'type': 'block', 'children': ['7', '19', '29']}, {'id': '7', 'type': 'if_statement', 'children': ['8', '13']}; {'id': '8', 'type': 'comparison_operator', 'children': ['9', '12'], 'value': '=='}, {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'argfunc'}; {'id': '12', 'type': 'string', 'children': [], 'value': "'argmax'"}, {'id': '13', 'type': 'block', 'children': ['14']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'assignment', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'activations'}, {'id': '17', 'type': 'unary_operator', 'children': ['18'], 'value': '-'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'activations'}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '22', 'type': 'call', 'children': ['23', '26']}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'argsort'}; {'id': '26', 'type': 'argument_list', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'activations'}; {'id': '28', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '29', 'type': 'return_statement', 'children': ['30']}; {'id': '30', 'type': 'call', 'children': ['31', '34']}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'argsort'} | def _get_bmu(self, activations):
if self.argfunc == 'argmax':
activations = -activations
sort = np.argsort(activations, 1)
return sort.argsort() |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_versions'}, {'id': '3', 'type': 'parameters', 'children': ['4', '7', '10']}; {'id': '4', 'type': 'default_parameter', 'children': ['5', '6']}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'versions'}; {'id': '6', 'type': 'tuple', 'children': []}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'reverse'}, {'id': '9', 'type': 'False', 'children': []}; {'id': '10', 'type': 'default_parameter', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'sep'}; {'id': '12', 'type': 'string', 'children': [], 'value': "u'.'"}, {'id': '13', 'type': 'block', 'children': ['14', '21', '25', '47', '54', '68', '232', '236', '246', '280', '287', '359', '369']}; {'id': '14', 'type': 'if_statement', 'children': ['15', '18']}, {'id': '15', 'type': 'comparison_operator', 'children': ['16', '17'], 'value': '=='}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'versions'}, {'id': '17', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '18', 'type': 'block', 'children': ['19']}, {'id': '19', 'type': 'return_statement', 'children': ['20']}; {'id': '20', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'digits'}; {'id': '24', 'type': 'string', 'children': [], 'value': "u'0123456789'"}, {'id': '25', 'type': 'function_definition', 'children': ['26', '27', '29']}; {'id': '26', 'type': 'function_name', 'children': [], 'value': 'toint'}, {'id': '27', 'type': 'parameters', 'children': ['28']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '29', 'type': 'block', 'children': ['30', '45']}; {'id': '30', 'type': 'try_statement', 'children': ['31', '39']}, {'id': '31', 'type': 'block', 'children': ['32']}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '35', 'type': 'call', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '39', 'type': 'except_clause', 'children': ['40']}; {'id': '40', 'type': 'block', 'children': ['41']}, {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '45', 'type': 'return_statement', 'children': ['46']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'assignment', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'versions'}; {'id': '50', 'type': 'call', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '52', 'type': 'argument_list', 'children': ['53']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'versions'}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}, {'id': '55', 'type': 'assignment', 'children': ['56', '60']}; {'id': '56', 'type': 'pattern_list', 'children': ['57', '58', '59']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'new_versions'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'alpha'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'sizes'}; {'id': '60', 'type': 'expression_list', 'children': ['61', '62', '65']}, {'id': '61', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '62', 'type': 'call', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '64', 'type': 'argument_list', 'children': []}, {'id': '65', 'type': 'call', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '67', 'type': 'argument_list', 'children': []}; {'id': '68', 'type': 'for_statement', 'children': ['69', '70', '71']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'versions'}, {'id': '71', 'type': 'block', 'children': ['72', '81', '85', '215', '225']}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'assignment', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'it'}, {'id': '75', 'type': 'call', 'children': ['76', '79']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '79', 'type': 'argument_list', 'children': ['80']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'sep'}, {'id': '81', 'type': 'expression_statement', 'children': ['82']}; {'id': '82', 'type': 'assignment', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'temp'}; {'id': '84', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '85', 'type': 'for_statement', 'children': ['86', '87', '88']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'it'}; {'id': '88', 'type': 'block', 'children': ['89', '96', '211']}, {'id': '89', 'type': 'expression_statement', 'children': ['90']}; {'id': '90', 'type': 'assignment', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '92', 'type': 'call', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'toint'}; {'id': '94', 'type': 'argument_list', 'children': ['95']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '96', 'type': 'if_statement', 'children': ['97', '103', '204']}, {'id': '97', 'type': 'not_operator', 'children': ['98']}; {'id': '98', 'type': 'call', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '100', 'type': 'argument_list', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '103', 'type': 'block', 'children': ['104', '111', '125', '143', '161', '168', '175', '187']}; {'id': '104', 'type': 'expression_statement', 'children': ['105']}, {'id': '105', 'type': 'assignment', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '107', 'type': 'call', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'u'}, {'id': '109', 'type': 'argument_list', 'children': ['110']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '111', 'type': 'expression_statement', 'children': ['112']}; {'id': '112', 'type': 'assignment', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'middle'}; {'id': '114', 'type': 'call', 'children': ['115', '123']}, {'id': '115', 'type': 'attribute', 'children': ['116', '122']}; {'id': '116', 'type': 'call', 'children': ['117', '120']}, {'id': '117', 'type': 'attribute', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'lstrip'}; {'id': '120', 'type': 'argument_list', 'children': ['121']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'digits'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'rstrip'}, {'id': '123', 'type': 'argument_list', 'children': ['124']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'digits'}, {'id': '125', 'type': 'expression_statement', 'children': ['126']}; {'id': '126', 'type': 'assignment', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'tail'}; {'id': '128', 'type': 'call', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'toint'}; {'id': '130', 'type': 'argument_list', 'children': ['131']}, {'id': '131', 'type': 'call', 'children': ['132', '140']}; {'id': '132', 'type': 'attribute', 'children': ['133', '139']}, {'id': '133', 'type': 'call', 'children': ['134', '137']}; {'id': '134', 'type': 'attribute', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'lstrip'}, {'id': '137', 'type': 'argument_list', 'children': ['138']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'digits'}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'replace'}; {'id': '140', 'type': 'argument_list', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'middle'}; {'id': '142', 'type': 'string', 'children': [], 'value': "u''"}, {'id': '143', 'type': 'expression_statement', 'children': ['144']}; {'id': '144', 'type': 'assignment', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'head'}; {'id': '146', 'type': 'call', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'toint'}; {'id': '148', 'type': 'argument_list', 'children': ['149']}, {'id': '149', 'type': 'call', 'children': ['150', '158']}; {'id': '150', 'type': 'attribute', 'children': ['151', '157']}, {'id': '151', 'type': 'call', 'children': ['152', '155']}; {'id': '152', 'type': 'attribute', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'rstrip'}, {'id': '155', 'type': 'argument_list', 'children': ['156']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'digits'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'replace'}; {'id': '158', 'type': 'argument_list', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'middle'}; {'id': '160', 'type': 'string', 'children': [], 'value': "u''"}, {'id': '161', 'type': 'expression_statement', 'children': ['162']}; {'id': '162', 'type': 'assignment', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'middle'}; {'id': '164', 'type': 'call', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'toint'}; {'id': '166', 'type': 'argument_list', 'children': ['167']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'middle'}; {'id': '168', 'type': 'expression_statement', 'children': ['169']}, {'id': '169', 'type': 'assignment', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'res'}, {'id': '171', 'type': 'list', 'children': ['172', '173', '174'], 'value': '[head, middle, tail]'}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'head'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'middle'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'tail'}, {'id': '175', 'type': 'while_statement', 'children': ['176', '179']}; {'id': '176', 'type': 'comparison_operator', 'children': ['177', '178'], 'value': 'in'}, {'id': '177', 'type': 'string', 'children': [], 'value': "u''"}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'res'}, {'id': '179', 'type': 'block', 'children': ['180']}; {'id': '180', 'type': 'expression_statement', 'children': ['181']}, {'id': '181', 'type': 'call', 'children': ['182', '185']}; {'id': '182', 'type': 'attribute', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'res'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'remove'}, {'id': '185', 'type': 'argument_list', 'children': ['186']}; {'id': '186', 'type': 'string', 'children': [], 'value': "u''"}, {'id': '187', 'type': 'for_statement', 'children': ['188', '189', '190']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'r'}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'res'}; {'id': '190', 'type': 'block', 'children': ['191']}, {'id': '191', 'type': 'if_statement', 'children': ['192', '196']}; {'id': '192', 'type': 'call', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'is_unicode'}; {'id': '194', 'type': 'argument_list', 'children': ['195']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'r'}; {'id': '196', 'type': 'block', 'children': ['197']}, {'id': '197', 'type': 'expression_statement', 'children': ['198']}; {'id': '198', 'type': 'call', 'children': ['199', '202']}, {'id': '199', 'type': 'attribute', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'alpha'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '202', 'type': 'argument_list', 'children': ['203']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'r'}; {'id': '204', 'type': 'else_clause', 'children': ['205']}, {'id': '205', 'type': 'block', 'children': ['206']}; {'id': '206', 'type': 'expression_statement', 'children': ['207']}, {'id': '207', 'type': 'assignment', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'res'}, {'id': '209', 'type': 'list', 'children': ['210'], 'value': '[x]'}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '211', 'type': 'expression_statement', 'children': ['212']}; {'id': '212', 'type': 'augmented_assignment', 'children': ['213', '214'], 'value': '+='}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'temp'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'res'}, {'id': '215', 'type': 'expression_statement', 'children': ['216']}; {'id': '216', 'type': 'call', 'children': ['217', '220']}, {'id': '217', 'type': 'attribute', 'children': ['218', '219']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'sizes'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '220', 'type': 'argument_list', 'children': ['221']}, {'id': '221', 'type': 'call', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '223', 'type': 'argument_list', 'children': ['224']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'temp'}, {'id': '225', 'type': 'expression_statement', 'children': ['226']}; {'id': '226', 'type': 'call', 'children': ['227', '230']}, {'id': '227', 'type': 'attribute', 'children': ['228', '229']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'new_versions'}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '230', 'type': 'argument_list', 'children': ['231']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'temp'}; {'id': '232', 'type': 'expression_statement', 'children': ['233']}, {'id': '233', 'type': 'assignment', 'children': ['234', '235']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'replace_dic'}, {'id': '235', 'type': 'dictionary', 'children': []}; {'id': '236', 'type': 'expression_statement', 'children': ['237']}, {'id': '237', 'type': 'assignment', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'alpha'}, {'id': '239', 'type': 'call', 'children': ['240', '241']}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '241', 'type': 'argument_list', 'children': ['242', '243']}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'alpha'}, {'id': '243', 'type': 'keyword_argument', 'children': ['244', '245']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'reverse'}, {'id': '245', 'type': 'True', 'children': []}; {'id': '246', 'type': 'if_statement', 'children': ['247', '251']}, {'id': '247', 'type': 'call', 'children': ['248', '249']}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '249', 'type': 'argument_list', 'children': ['250']}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'alpha'}, {'id': '251', 'type': 'block', 'children': ['252']}; {'id': '252', 'type': 'expression_statement', 'children': ['253']}, {'id': '253', 'type': 'assignment', 'children': ['254', '255']}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'replace_dic'}, {'id': '255', 'type': 'call', 'children': ['256', '257']}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'dict'}, {'id': '257', 'type': 'argument_list', 'children': ['258']}; {'id': '258', 'type': 'call', 'children': ['259', '260']}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'zip'}; {'id': '260', 'type': 'argument_list', 'children': ['261', '262']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'alpha'}; {'id': '262', 'type': 'call', 'children': ['263', '264']}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '264', 'type': 'argument_list', 'children': ['265']}, {'id': '265', 'type': 'call', 'children': ['266', '267']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '267', 'type': 'argument_list', 'children': ['268', '270', '278']}; {'id': '268', 'type': 'unary_operator', 'children': ['269'], 'value': '-'}, {'id': '269', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '270', 'type': 'unary_operator', 'children': ['271'], 'value': '-'}, {'id': '271', 'type': 'parenthesized_expression', 'children': ['272'], 'value': '()'}; {'id': '272', 'type': 'binary_operator', 'children': ['273', '277'], 'value': '+'}, {'id': '273', 'type': 'call', 'children': ['274', '275']}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '275', 'type': 'argument_list', 'children': ['276']}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'alpha'}, {'id': '277', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '278', 'type': 'unary_operator', 'children': ['279'], 'value': '-'}, {'id': '279', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '280', 'type': 'expression_statement', 'children': ['281']}, {'id': '281', 'type': 'assignment', 'children': ['282', '283']}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'nmax'}, {'id': '283', 'type': 'call', 'children': ['284', '285']}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'max'}, {'id': '285', 'type': 'argument_list', 'children': ['286']}; {'id': '286', 'type': 'identifier', 'children': [], 'value': 'sizes'}, {'id': '287', 'type': 'for_statement', 'children': ['288', '289', '296']}; {'id': '288', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '289', 'type': 'call', 'children': ['290', '291']}; {'id': '290', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '291', 'type': 'argument_list', 'children': ['292']}; {'id': '292', 'type': 'call', 'children': ['293', '294']}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '294', 'type': 'argument_list', 'children': ['295']}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'new_versions'}; {'id': '296', 'type': 'block', 'children': ['297', '301', '330', '339', '346', '353']}, {'id': '297', 'type': 'expression_statement', 'children': ['298']}; {'id': '298', 'type': 'assignment', 'children': ['299', '300']}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '300', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '301', 'type': 'for_statement', 'children': ['302', '303', '306']}; {'id': '302', 'type': 'identifier', 'children': [], 'value': 'z'}, {'id': '303', 'type': 'subscript', 'children': ['304', '305']}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'new_versions'}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '306', 'type': 'block', 'children': ['307']}, {'id': '307', 'type': 'if_statement', 'children': ['308', '311', '321']}; {'id': '308', 'type': 'comparison_operator', 'children': ['309', '310'], 'value': 'in'}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'z'}; {'id': '310', 'type': 'identifier', 'children': [], 'value': 'replace_dic'}, {'id': '311', 'type': 'block', 'children': ['312']}; {'id': '312', 'type': 'expression_statement', 'children': ['313']}, {'id': '313', 'type': 'call', 'children': ['314', '317']}; {'id': '314', 'type': 'attribute', 'children': ['315', '316']}, {'id': '315', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '317', 'type': 'argument_list', 'children': ['318']}; {'id': '318', 'type': 'subscript', 'children': ['319', '320']}, {'id': '319', 'type': 'identifier', 'children': [], 'value': 'replace_dic'}; {'id': '320', 'type': 'identifier', 'children': [], 'value': 'z'}, {'id': '321', 'type': 'else_clause', 'children': ['322']}; {'id': '322', 'type': 'block', 'children': ['323']}, {'id': '323', 'type': 'expression_statement', 'children': ['324']}; {'id': '324', 'type': 'call', 'children': ['325', '328']}, {'id': '325', 'type': 'attribute', 'children': ['326', '327']}; {'id': '326', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '327', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '328', 'type': 'argument_list', 'children': ['329']}, {'id': '329', 'type': 'identifier', 'children': [], 'value': 'z'}; {'id': '330', 'type': 'expression_statement', 'children': ['331']}, {'id': '331', 'type': 'assignment', 'children': ['332', '333']}; {'id': '332', 'type': 'identifier', 'children': [], 'value': 'nzeros'}, {'id': '333', 'type': 'binary_operator', 'children': ['334', '335'], 'value': '-'}; {'id': '334', 'type': 'identifier', 'children': [], 'value': 'nmax'}, {'id': '335', 'type': 'call', 'children': ['336', '337']}; {'id': '336', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '337', 'type': 'argument_list', 'children': ['338']}; {'id': '338', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '339', 'type': 'expression_statement', 'children': ['340']}; {'id': '340', 'type': 'augmented_assignment', 'children': ['341', '342'], 'value': '+='}, {'id': '341', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '342', 'type': 'binary_operator', 'children': ['343', '345'], 'value': '*'}, {'id': '343', 'type': 'list', 'children': ['344'], 'value': '[0]'}; {'id': '344', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '345', 'type': 'identifier', 'children': [], 'value': 'nzeros'}; {'id': '346', 'type': 'expression_statement', 'children': ['347']}, {'id': '347', 'type': 'augmented_assignment', 'children': ['348', '349'], 'value': '+='}; {'id': '348', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '349', 'type': 'list', 'children': ['350'], 'value': '[versions[i]]'}; {'id': '350', 'type': 'subscript', 'children': ['351', '352']}, {'id': '351', 'type': 'identifier', 'children': [], 'value': 'versions'}; {'id': '352', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '353', 'type': 'expression_statement', 'children': ['354']}; {'id': '354', 'type': 'assignment', 'children': ['355', '358']}, {'id': '355', 'type': 'subscript', 'children': ['356', '357']}; {'id': '356', 'type': 'identifier', 'children': [], 'value': 'new_versions'}, {'id': '357', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '358', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '359', 'type': 'expression_statement', 'children': ['360']}; {'id': '360', 'type': 'assignment', 'children': ['361', '362']}, {'id': '361', 'type': 'identifier', 'children': [], 'value': 'new_versions'}; {'id': '362', 'type': 'call', 'children': ['363', '364']}, {'id': '363', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '364', 'type': 'argument_list', 'children': ['365', '366']}, {'id': '365', 'type': 'identifier', 'children': [], 'value': 'new_versions'}; {'id': '366', 'type': 'keyword_argument', 'children': ['367', '368']}, {'id': '367', 'type': 'identifier', 'children': [], 'value': 'reverse'}; {'id': '368', 'type': 'identifier', 'children': [], 'value': 'reverse'}, {'id': '369', 'type': 'return_statement', 'children': ['370']}; {'id': '370', 'type': 'list_comprehension', 'children': ['371', '375']}, {'id': '371', 'type': 'subscript', 'children': ['372', '373']}; {'id': '372', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '373', 'type': 'unary_operator', 'children': ['374'], 'value': '-'}; {'id': '374', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '375', 'type': 'for_in_clause', 'children': ['376', '377']}; {'id': '376', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '377', 'type': 'identifier', 'children': [], 'value': 'new_versions'} | def sort_versions(versions=(), reverse=False, sep=u'.'):
if versions == []:
return []
digits = u'0123456789'
def toint(x):
try:
n = int(x)
except:
n = x
return n
versions = list(versions)
new_versions, alpha, sizes = [], set(), set()
for item in versions:
it = item.split(sep)
temp = []
for i in it:
x = toint(i)
if not isinstance(x, int):
x = u(x)
middle = x.lstrip(digits).rstrip(digits)
tail = toint(x.lstrip(digits).replace(middle, u''))
head = toint(x.rstrip(digits).replace(middle, u''))
middle = toint(middle)
res = [head, middle, tail]
while u'' in res:
res.remove(u'')
for r in res:
if is_unicode(r):
alpha.add(r)
else:
res = [x]
temp += res
sizes.add(len(temp))
new_versions.append(temp)
replace_dic = {}
alpha = sorted(alpha, reverse=True)
if len(alpha):
replace_dic = dict(zip(alpha, list(range(-1, -(len(alpha)+1), -1))))
nmax = max(sizes)
for i in range(len(new_versions)):
item = []
for z in new_versions[i]:
if z in replace_dic:
item.append(replace_dic[z])
else:
item.append(z)
nzeros = nmax - len(item)
item += [0]*nzeros
item += [versions[i]]
new_versions[i] = item
new_versions = sorted(new_versions, reverse=reverse)
return [n[-1] for n in new_versions] |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'make_qq_plot'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'kev'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'obs'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'mdl'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'unit'}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'key_text'}, {'id': '9', 'type': 'block', 'children': ['10', '15', '24', '33', '42', '51', '60', '74', '82', '95', '104', '129', '135', '141', '254', '266', '274']}; {'id': '10', 'type': 'import_statement', 'children': ['11']}, {'id': '11', 'type': 'aliased_import', 'children': ['12', '14']}; {'id': '12', 'type': 'dotted_name', 'children': ['13']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'omega'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'om'}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'kev'}; {'id': '18', 'type': 'call', 'children': ['19', '22']}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'asarray'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'kev'}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'obs'}, {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'asarray'}, {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'obs'}, {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'mdl'}; {'id': '36', 'type': 'call', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'asarray'}; {'id': '40', 'type': 'argument_list', 'children': ['41']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'mdl'}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'c_obs'}, {'id': '45', 'type': 'call', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'cumsum'}, {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'obs'}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'c_mdl'}; {'id': '54', 'type': 'call', 'children': ['55', '58']}, {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'cumsum'}; {'id': '58', 'type': 'argument_list', 'children': ['59']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'mdl'}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'assignment', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'mx'}, {'id': '63', 'type': 'call', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'max'}, {'id': '65', 'type': 'argument_list', 'children': ['66', '70']}; {'id': '66', 'type': 'subscript', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'c_obs'}; {'id': '68', 'type': 'unary_operator', 'children': ['69'], 'value': '-'}, {'id': '69', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '70', 'type': 'subscript', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'c_mdl'}; {'id': '72', 'type': 'unary_operator', 'children': ['73'], 'value': '-'}, {'id': '73', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}, {'id': '75', 'type': 'assignment', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '77', 'type': 'call', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'om'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'RectPlot'}, {'id': '81', 'type': 'argument_list', 'children': []}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}, {'id': '83', 'type': 'call', 'children': ['84', '87']}; {'id': '84', 'type': 'attribute', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'addXY'}, {'id': '87', 'type': 'argument_list', 'children': ['88', '91', '94']}; {'id': '88', 'type': 'list', 'children': ['89', '90'], 'value': '[0, mx]'}, {'id': '89', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'mx'}, {'id': '91', 'type': 'list', 'children': ['92', '93'], 'value': '[0, mx]'}; {'id': '92', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'mx'}; {'id': '94', 'type': 'string', 'children': [], 'value': "'1:1'"}, {'id': '95', 'type': 'expression_statement', 'children': ['96']}; {'id': '96', 'type': 'call', 'children': ['97', '100']}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'addXY'}; {'id': '100', 'type': 'argument_list', 'children': ['101', '102', '103']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'c_mdl'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'c_obs'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'key_text'}; {'id': '104', 'type': 'expression_statement', 'children': ['105']}, {'id': '105', 'type': 'assignment', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'locs'}, {'id': '107', 'type': 'binary_operator', 'children': ['108', '123'], 'value': '*'}; {'id': '108', 'type': 'call', 'children': ['109', '112']}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'array'}; {'id': '112', 'type': 'argument_list', 'children': ['113']}, {'id': '113', 'type': 'list', 'children': ['114', '115', '116', '117', '118', '119', '120', '121', '122'], 'value': '[0, 0.05, 0.08, 0.11, 0.17, 0.3, 0.4, 0.7, 1]'}; {'id': '114', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '115', 'type': 'float', 'children': [], 'value': '0.05'}; {'id': '116', 'type': 'float', 'children': [], 'value': '0.08'}, {'id': '117', 'type': 'float', 'children': [], 'value': '0.11'}; {'id': '118', 'type': 'float', 'children': [], 'value': '0.17'}, {'id': '119', 'type': 'float', 'children': [], 'value': '0.3'}; {'id': '120', 'type': 'float', 'children': [], 'value': '0.4'}, {'id': '121', 'type': 'float', 'children': [], 'value': '0.7'}; {'id': '122', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '123', 'type': 'parenthesized_expression', 'children': ['124'], 'value': '()'}; {'id': '124', 'type': 'binary_operator', 'children': ['125', '128'], 'value': '-'}, {'id': '125', 'type': 'attribute', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'kev'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'size'}; {'id': '128', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '129', 'type': 'expression_statement', 'children': ['130']}; {'id': '130', 'type': 'assignment', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'c0'}; {'id': '132', 'type': 'binary_operator', 'children': ['133', '134'], 'value': '*'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'mx'}; {'id': '134', 'type': 'float', 'children': [], 'value': '1.05'}, {'id': '135', 'type': 'expression_statement', 'children': ['136']}; {'id': '136', 'type': 'assignment', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'c1'}; {'id': '138', 'type': 'binary_operator', 'children': ['139', '140'], 'value': '*'}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'mx'}; {'id': '140', 'type': 'float', 'children': [], 'value': '1.1'}, {'id': '141', 'type': 'for_statement', 'children': ['142', '143', '144']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'loc'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'locs'}; {'id': '144', 'type': 'block', 'children': ['145', '157', '163', '182', '201', '220', '238']}, {'id': '145', 'type': 'expression_statement', 'children': ['146']}; {'id': '146', 'type': 'assignment', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'i0'}; {'id': '148', 'type': 'call', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '150', 'type': 'argument_list', 'children': ['151']}, {'id': '151', 'type': 'call', 'children': ['152', '155']}; {'id': '152', 'type': 'attribute', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'floor'}, {'id': '155', 'type': 'argument_list', 'children': ['156']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'loc'}, {'id': '157', 'type': 'expression_statement', 'children': ['158']}; {'id': '158', 'type': 'assignment', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'frac'}; {'id': '160', 'type': 'binary_operator', 'children': ['161', '162'], 'value': '-'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'loc'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'i0'}, {'id': '163', 'type': 'expression_statement', 'children': ['164']}; {'id': '164', 'type': 'assignment', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'kevval'}; {'id': '166', 'type': 'binary_operator', 'children': ['167', '175'], 'value': '+'}, {'id': '167', 'type': 'binary_operator', 'children': ['168', '172'], 'value': '*'}; {'id': '168', 'type': 'parenthesized_expression', 'children': ['169'], 'value': '()'}, {'id': '169', 'type': 'binary_operator', 'children': ['170', '171'], 'value': '-'}; {'id': '170', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'frac'}; {'id': '172', 'type': 'subscript', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'kev'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'i0'}, {'id': '175', 'type': 'binary_operator', 'children': ['176', '177'], 'value': '*'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'frac'}, {'id': '177', 'type': 'subscript', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'kev'}, {'id': '179', 'type': 'binary_operator', 'children': ['180', '181'], 'value': '+'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'i0'}, {'id': '181', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '182', 'type': 'expression_statement', 'children': ['183']}, {'id': '183', 'type': 'assignment', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'mdlval'}, {'id': '185', 'type': 'binary_operator', 'children': ['186', '194'], 'value': '+'}; {'id': '186', 'type': 'binary_operator', 'children': ['187', '191'], 'value': '*'}, {'id': '187', 'type': 'parenthesized_expression', 'children': ['188'], 'value': '()'}; {'id': '188', 'type': 'binary_operator', 'children': ['189', '190'], 'value': '-'}, {'id': '189', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'frac'}, {'id': '191', 'type': 'subscript', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'c_mdl'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'i0'}; {'id': '194', 'type': 'binary_operator', 'children': ['195', '196'], 'value': '*'}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'frac'}; {'id': '196', 'type': 'subscript', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'c_mdl'}; {'id': '198', 'type': 'binary_operator', 'children': ['199', '200'], 'value': '+'}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'i0'}; {'id': '200', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '201', 'type': 'expression_statement', 'children': ['202']}; {'id': '202', 'type': 'assignment', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'obsval'}; {'id': '204', 'type': 'binary_operator', 'children': ['205', '213'], 'value': '+'}, {'id': '205', 'type': 'binary_operator', 'children': ['206', '210'], 'value': '*'}; {'id': '206', 'type': 'parenthesized_expression', 'children': ['207'], 'value': '()'}, {'id': '207', 'type': 'binary_operator', 'children': ['208', '209'], 'value': '-'}; {'id': '208', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'frac'}; {'id': '210', 'type': 'subscript', 'children': ['211', '212']}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'c_obs'}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'i0'}, {'id': '213', 'type': 'binary_operator', 'children': ['214', '215'], 'value': '*'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'frac'}, {'id': '215', 'type': 'subscript', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'c_obs'}, {'id': '217', 'type': 'binary_operator', 'children': ['218', '219'], 'value': '+'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'i0'}, {'id': '219', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '220', 'type': 'expression_statement', 'children': ['221']}, {'id': '221', 'type': 'call', 'children': ['222', '225']}; {'id': '222', 'type': 'attribute', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'addXY'}, {'id': '225', 'type': 'argument_list', 'children': ['226', '229', '232', '235']}; {'id': '226', 'type': 'list', 'children': ['227', '228'], 'value': '[mdlval, mdlval]'}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'mdlval'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'mdlval'}, {'id': '229', 'type': 'list', 'children': ['230', '231'], 'value': '[c0, c1]'}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'c0'}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'c1'}; {'id': '232', 'type': 'binary_operator', 'children': ['233', '234'], 'value': '%'}, {'id': '233', 'type': 'string', 'children': [], 'value': "'%.2f keV'"}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'kevval'}, {'id': '235', 'type': 'keyword_argument', 'children': ['236', '237']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'dsn'}, {'id': '237', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '238', 'type': 'expression_statement', 'children': ['239']}, {'id': '239', 'type': 'call', 'children': ['240', '243']}; {'id': '240', 'type': 'attribute', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'addXY'}, {'id': '243', 'type': 'argument_list', 'children': ['244', '247', '250', '251']}; {'id': '244', 'type': 'list', 'children': ['245', '246'], 'value': '[c0, c1]'}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'c0'}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'c1'}, {'id': '247', 'type': 'list', 'children': ['248', '249'], 'value': '[obsval, obsval]'}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'obsval'}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'obsval'}; {'id': '250', 'type': 'None', 'children': []}, {'id': '251', 'type': 'keyword_argument', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'dsn'}, {'id': '253', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '254', 'type': 'expression_statement', 'children': ['255']}, {'id': '255', 'type': 'call', 'children': ['256', '259']}; {'id': '256', 'type': 'attribute', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'setLabels'}, {'id': '259', 'type': 'argument_list', 'children': ['260', '263']}; {'id': '260', 'type': 'binary_operator', 'children': ['261', '262'], 'value': '+'}, {'id': '261', 'type': 'string', 'children': [], 'value': "'Cumulative model '"}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'unit'}, {'id': '263', 'type': 'binary_operator', 'children': ['264', '265'], 'value': '+'}; {'id': '264', 'type': 'string', 'children': [], 'value': "'Cumulative data '"}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'unit'}; {'id': '266', 'type': 'expression_statement', 'children': ['267']}, {'id': '267', 'type': 'assignment', 'children': ['268', '273']}; {'id': '268', 'type': 'attribute', 'children': ['269', '272']}, {'id': '269', 'type': 'attribute', 'children': ['270', '271']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'defaultKeyOverlay'}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'vAlign'}, {'id': '273', 'type': 'float', 'children': [], 'value': '0.3'}; {'id': '274', 'type': 'return_statement', 'children': ['275']}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'p'} | def make_qq_plot(kev, obs, mdl, unit, key_text):
import omega as om
kev = np.asarray(kev)
obs = np.asarray(obs)
mdl = np.asarray(mdl)
c_obs = np.cumsum(obs)
c_mdl = np.cumsum(mdl)
mx = max(c_obs[-1], c_mdl[-1])
p = om.RectPlot()
p.addXY([0, mx], [0, mx], '1:1')
p.addXY(c_mdl, c_obs, key_text)
locs = np.array([0, 0.05, 0.08, 0.11, 0.17, 0.3, 0.4, 0.7, 1]) * (kev.size - 2)
c0 = mx * 1.05
c1 = mx * 1.1
for loc in locs:
i0 = int(np.floor(loc))
frac = loc - i0
kevval = (1 - frac) * kev[i0] + frac * kev[i0+1]
mdlval = (1 - frac) * c_mdl[i0] + frac * c_mdl[i0+1]
obsval = (1 - frac) * c_obs[i0] + frac * c_obs[i0+1]
p.addXY([mdlval, mdlval], [c0, c1], '%.2f keV' % kevval, dsn=2)
p.addXY([c0, c1], [obsval, obsval], None, dsn=2)
p.setLabels('Cumulative model ' + unit, 'Cumulative data ' + unit)
p.defaultKeyOverlay.vAlign = 0.3
return p |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_qr_factor_full'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'dtype'}, {'id': '7', 'type': 'attribute', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '10', 'type': 'block', 'children': ['11', '19', '32', '43', '73', '82', '91', '152']}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '16']}, {'id': '13', 'type': 'pattern_list', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'm'}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'shape'}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '26', '27']}, {'id': '21', 'type': 'pattern_list', 'children': ['22', '23', '24', '25']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'packed'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'pmut'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'rdiag'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'acnorm'}; {'id': '26', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '27', 'type': 'call', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': '_manual_qr_factor_packed'}, {'id': '29', 'type': 'argument_list', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'dtype'}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'r'}, {'id': '35', 'type': 'call', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'zeros'}, {'id': '39', 'type': 'argument_list', 'children': ['40']}; {'id': '40', 'type': 'tuple', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'm'}, {'id': '43', 'type': 'for_statement', 'children': ['44', '45', '49']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '45', 'type': 'call', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '47', 'type': 'argument_list', 'children': ['48']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '49', 'type': 'block', 'children': ['50', '64']}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'assignment', 'children': ['52', '58']}; {'id': '52', 'type': 'subscript', 'children': ['53', '54', '55']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'r'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '55', 'type': 'slice', 'children': ['56', '57']}; {'id': '56', 'type': 'colon', 'children': []}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '58', 'type': 'subscript', 'children': ['59', '60', '61']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'packed'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '61', 'type': 'slice', 'children': ['62', '63']}; {'id': '62', 'type': 'colon', 'children': []}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'assignment', 'children': ['66', '70']}; {'id': '66', 'type': 'subscript', 'children': ['67', '68', '69']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'r'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '70', 'type': 'subscript', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'rdiag'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'assignment', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'q'}; {'id': '76', 'type': 'call', 'children': ['77', '80']}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'eye'}; {'id': '80', 'type': 'argument_list', 'children': ['81']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'm'}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}, {'id': '83', 'type': 'assignment', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '85', 'type': 'call', 'children': ['86', '89']}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'empty'}, {'id': '89', 'type': 'argument_list', 'children': ['90']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'm'}, {'id': '91', 'type': 'for_statement', 'children': ['92', '93', '97']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '93', 'type': 'call', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '97', 'type': 'block', 'children': ['98', '107', '115', '142']}; {'id': '98', 'type': 'expression_statement', 'children': ['99']}, {'id': '99', 'type': 'assignment', 'children': ['100', '104']}; {'id': '100', 'type': 'subscript', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '102', 'type': 'slice', 'children': ['103']}, {'id': '103', 'type': 'colon', 'children': []}; {'id': '104', 'type': 'subscript', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'packed'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '107', 'type': 'expression_statement', 'children': ['108']}; {'id': '108', 'type': 'assignment', 'children': ['109', '114']}, {'id': '109', 'type': 'subscript', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '111', 'type': 'slice', 'children': ['112', '113']}; {'id': '112', 'type': 'colon', 'children': []}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '114', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '115', 'type': 'expression_statement', 'children': ['116']}; {'id': '116', 'type': 'assignment', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'hhm'}; {'id': '118', 'type': 'binary_operator', 'children': ['119', '125'], 'value': '-'}, {'id': '119', 'type': 'call', 'children': ['120', '123']}; {'id': '120', 'type': 'attribute', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'eye'}, {'id': '123', 'type': 'argument_list', 'children': ['124']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'm'}, {'id': '125', 'type': 'binary_operator', 'children': ['126', '135'], 'value': '/'}; {'id': '126', 'type': 'binary_operator', 'children': ['127', '128'], 'value': '*'}, {'id': '127', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '128', 'type': 'call', 'children': ['129', '132']}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'outer'}; {'id': '132', 'type': 'argument_list', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '135', 'type': 'call', 'children': ['136', '139']}; {'id': '136', 'type': 'attribute', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'dot'}, {'id': '139', 'type': 'argument_list', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '142', 'type': 'expression_statement', 'children': ['143']}, {'id': '143', 'type': 'assignment', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'q'}, {'id': '145', 'type': 'call', 'children': ['146', '149']}; {'id': '146', 'type': 'attribute', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'dot'}, {'id': '149', 'type': 'argument_list', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'hhm'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'q'}; {'id': '152', 'type': 'return_statement', 'children': ['153']}, {'id': '153', 'type': 'expression_list', 'children': ['154', '155', '156']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'q'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'r'} | def _qr_factor_full(a, dtype=np.float):
n, m = a.shape
packed, pmut, rdiag, acnorm = \
_manual_qr_factor_packed(a, dtype)
r = np.zeros((n, m))
for i in range(n):
r[i,:i] = packed[i,:i]
r[i,i] = rdiag[i]
q = np.eye(m)
v = np.empty(m)
for i in range(n):
v[:] = packed[i]
v[:i] = 0
hhm = np.eye(m) - 2 * np.outer(v, v) / np.dot(v, v)
q = np.dot(hhm, q)
return q, r, pmut |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_qrd_solve_full'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'ddiag'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'dtype'}, {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '12', 'type': 'block', 'children': ['13', '23', '33', '43', '51', '55', '62', '69', '79', '91', '115']}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '16', 'type': 'call', 'children': ['17', '20']}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'asarray'}; {'id': '20', 'type': 'argument_list', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'dtype'}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '26', 'type': 'call', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'asarray'}; {'id': '30', 'type': 'argument_list', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'dtype'}, {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'ddiag'}; {'id': '36', 'type': 'call', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'asarray'}; {'id': '40', 'type': 'argument_list', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'ddiag'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'dtype'}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '48']}, {'id': '45', 'type': 'pattern_list', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'm'}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'shape'}, {'id': '51', 'type': 'assert_statement', 'children': ['52']}; {'id': '52', 'type': 'comparison_operator', 'children': ['53', '54'], 'value': '>='}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'm'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '55', 'type': 'assert_statement', 'children': ['56']}; {'id': '56', 'type': 'comparison_operator', 'children': ['57', '60'], 'value': '=='}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'b'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'shape'}; {'id': '60', 'type': 'tuple', 'children': ['61']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'm'}; {'id': '62', 'type': 'assert_statement', 'children': ['63']}, {'id': '63', 'type': 'comparison_operator', 'children': ['64', '67'], 'value': '=='}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'ddiag'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'shape'}, {'id': '67', 'type': 'tuple', 'children': ['68']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '69', 'type': 'expression_statement', 'children': ['70']}; {'id': '70', 'type': 'assignment', 'children': ['71', '75']}, {'id': '71', 'type': 'pattern_list', 'children': ['72', '73', '74']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'q'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'r'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'pmut'}, {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': '_qr_factor_full'}, {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '79', 'type': 'expression_statement', 'children': ['80']}; {'id': '80', 'type': 'assignment', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'bqt'}; {'id': '82', 'type': 'call', 'children': ['83', '86']}, {'id': '83', 'type': 'attribute', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'dot'}; {'id': '86', 'type': 'argument_list', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'q'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'T'}, {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'assignment', 'children': ['93', '96']}, {'id': '93', 'type': 'pattern_list', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '96', 'type': 'call', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': '_manual_qrd_solve'}; {'id': '98', 'type': 'argument_list', 'children': ['99', '106', '107', '108', '109', '112']}, {'id': '99', 'type': 'subscript', 'children': ['100', '101', '103']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'r'}, {'id': '101', 'type': 'slice', 'children': ['102']}; {'id': '102', 'type': 'colon', 'children': []}, {'id': '103', 'type': 'slice', 'children': ['104', '105']}; {'id': '104', 'type': 'colon', 'children': []}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'pmut'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'ddiag'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'bqt'}, {'id': '109', 'type': 'keyword_argument', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'dtype'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'dtype'}; {'id': '112', 'type': 'keyword_argument', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'build_s'}; {'id': '114', 'type': 'True', 'children': []}, {'id': '115', 'type': 'return_statement', 'children': ['116']}; {'id': '116', 'type': 'expression_list', 'children': ['117', '118', '119']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'pmut'} | def _qrd_solve_full(a, b, ddiag, dtype=np.float):
a = np.asarray(a, dtype)
b = np.asarray(b, dtype)
ddiag = np.asarray(ddiag, dtype)
n, m = a.shape
assert m >= n
assert b.shape == (m, )
assert ddiag.shape == (n, )
q, r, pmut = _qr_factor_full(a)
bqt = np.dot(b, q.T)
x, s = _manual_qrd_solve(r[:,:n], pmut, ddiag, bqt,
dtype=dtype, build_s=True)
return x, s, pmut |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'concat'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'invises'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'outvis'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'timesort'}; {'id': '8', 'type': 'False', 'children': []}, {'id': '9', 'type': 'block', 'children': ['10', '20', '30', '47', '69', '81', '97', '103', '116', '148', '160', '182', '204', '213']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}, {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'tb'}, {'id': '13', 'type': 'call', 'children': ['14', '19']}; {'id': '14', 'type': 'attribute', 'children': ['15', '18']}, {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'util'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'tools'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'table'}, {'id': '19', 'type': 'argument_list', 'children': []}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'ms'}, {'id': '23', 'type': 'call', 'children': ['24', '29']}; {'id': '24', 'type': 'attribute', 'children': ['25', '28']}, {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'util'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'tools'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'ms'}, {'id': '29', 'type': 'argument_list', 'children': []}; {'id': '30', 'type': 'if_statement', 'children': ['31', '39']}, {'id': '31', 'type': 'call', 'children': ['32', '37']}; {'id': '32', 'type': 'attribute', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'exists'}, {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'outvis'}, {'id': '39', 'type': 'block', 'children': ['40']}; {'id': '40', 'type': 'raise_statement', 'children': ['41']}, {'id': '41', 'type': 'call', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'RuntimeError'}, {'id': '43', 'type': 'argument_list', 'children': ['44']}; {'id': '44', 'type': 'binary_operator', 'children': ['45', '46'], 'value': '%'}, {'id': '45', 'type': 'string', 'children': [], 'value': '\'output "%s" already exists\''}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'outvis'}, {'id': '47', 'type': 'for_statement', 'children': ['48', '49', '50']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'invis'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'invises'}; {'id': '50', 'type': 'block', 'children': ['51']}, {'id': '51', 'type': 'if_statement', 'children': ['52', '61']}; {'id': '52', 'type': 'not_operator', 'children': ['53']}, {'id': '53', 'type': 'call', 'children': ['54', '59']}; {'id': '54', 'type': 'attribute', 'children': ['55', '58']}, {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'isdir'}, {'id': '59', 'type': 'argument_list', 'children': ['60']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'invis'}, {'id': '61', 'type': 'block', 'children': ['62']}; {'id': '62', 'type': 'raise_statement', 'children': ['63']}, {'id': '63', 'type': 'call', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'RuntimeError'}, {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'binary_operator', 'children': ['67', '68'], 'value': '%'}, {'id': '67', 'type': 'string', 'children': [], 'value': '\'input "%s" does not exist\''}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'invis'}, {'id': '69', 'type': 'expression_statement', 'children': ['70']}; {'id': '70', 'type': 'call', 'children': ['71', '74']}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'tb'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'b'}, {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'subscript', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'invises'}; {'id': '80', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '81', 'type': 'expression_statement', 'children': ['82']}; {'id': '82', 'type': 'call', 'children': ['83', '86']}, {'id': '83', 'type': 'attribute', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'tb'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'copy'}; {'id': '86', 'type': 'argument_list', 'children': ['87', '91', '94']}, {'id': '87', 'type': 'call', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'b'}, {'id': '89', 'type': 'argument_list', 'children': ['90']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'outvis'}, {'id': '91', 'type': 'keyword_argument', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'deep'}, {'id': '93', 'type': 'True', 'children': []}; {'id': '94', 'type': 'keyword_argument', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'valuecopy'}; {'id': '96', 'type': 'True', 'children': []}, {'id': '97', 'type': 'expression_statement', 'children': ['98']}; {'id': '98', 'type': 'call', 'children': ['99', '102']}, {'id': '99', 'type': 'attribute', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'tb'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'close'}; {'id': '102', 'type': 'argument_list', 'children': []}, {'id': '103', 'type': 'expression_statement', 'children': ['104']}; {'id': '104', 'type': 'call', 'children': ['105', '108']}, {'id': '105', 'type': 'attribute', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'ms'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '108', 'type': 'argument_list', 'children': ['109', '113']}, {'id': '109', 'type': 'call', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'b'}, {'id': '111', 'type': 'argument_list', 'children': ['112']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'outvis'}, {'id': '113', 'type': 'keyword_argument', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'nomodify'}, {'id': '115', 'type': 'False', 'children': []}; {'id': '116', 'type': 'for_statement', 'children': ['117', '118', '123']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'invis'}; {'id': '118', 'type': 'subscript', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'invises'}; {'id': '120', 'type': 'slice', 'children': ['121', '122']}, {'id': '121', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '122', 'type': 'colon', 'children': []}, {'id': '123', 'type': 'block', 'children': ['124']}; {'id': '124', 'type': 'expression_statement', 'children': ['125']}, {'id': '125', 'type': 'call', 'children': ['126', '129']}; {'id': '126', 'type': 'attribute', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'ms'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'concatenate'}, {'id': '129', 'type': 'argument_list', 'children': ['130', '136', '142']}; {'id': '130', 'type': 'keyword_argument', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'msfile'}; {'id': '132', 'type': 'call', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '134', 'type': 'argument_list', 'children': ['135']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'invis'}; {'id': '136', 'type': 'keyword_argument', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'freqtol'}; {'id': '138', 'type': 'call', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '140', 'type': 'argument_list', 'children': ['141']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'concat_freqtol'}; {'id': '142', 'type': 'keyword_argument', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'dirtol'}; {'id': '144', 'type': 'call', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '146', 'type': 'argument_list', 'children': ['147']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'concat_dirtol'}; {'id': '148', 'type': 'expression_statement', 'children': ['149']}, {'id': '149', 'type': 'call', 'children': ['150', '153']}; {'id': '150', 'type': 'attribute', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'ms'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'writehistory'}, {'id': '153', 'type': 'argument_list', 'children': ['154', '157']}; {'id': '154', 'type': 'keyword_argument', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'message'}; {'id': '156', 'type': 'string', 'children': [], 'value': "b'taskname=tasklib.concat'"}, {'id': '157', 'type': 'keyword_argument', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'origin'}, {'id': '159', 'type': 'string', 'children': [], 'value': "b'tasklib.concat'"}; {'id': '160', 'type': 'expression_statement', 'children': ['161']}, {'id': '161', 'type': 'call', 'children': ['162', '165']}; {'id': '162', 'type': 'attribute', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'ms'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'writehistory'}, {'id': '165', 'type': 'argument_list', 'children': ['166', '179']}; {'id': '166', 'type': 'keyword_argument', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'message'}; {'id': '168', 'type': 'call', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '170', 'type': 'argument_list', 'children': ['171']}, {'id': '171', 'type': 'binary_operator', 'children': ['172', '173'], 'value': '+'}; {'id': '172', 'type': 'string', 'children': [], 'value': "'vis = '"}, {'id': '173', 'type': 'call', 'children': ['174', '177']}; {'id': '174', 'type': 'attribute', 'children': ['175', '176']}, {'id': '175', 'type': 'string', 'children': [], 'value': "', '"}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '177', 'type': 'argument_list', 'children': ['178']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'invises'}, {'id': '179', 'type': 'keyword_argument', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'origin'}, {'id': '181', 'type': 'string', 'children': [], 'value': "b'tasklib.concat'"}; {'id': '182', 'type': 'expression_statement', 'children': ['183']}, {'id': '183', 'type': 'call', 'children': ['184', '187']}; {'id': '184', 'type': 'attribute', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'ms'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'writehistory'}, {'id': '187', 'type': 'argument_list', 'children': ['188', '201']}; {'id': '188', 'type': 'keyword_argument', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'message'}; {'id': '190', 'type': 'call', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '192', 'type': 'argument_list', 'children': ['193']}, {'id': '193', 'type': 'binary_operator', 'children': ['194', '195'], 'value': '+'}; {'id': '194', 'type': 'string', 'children': [], 'value': "'timesort = '"}, {'id': '195', 'type': 'subscript', 'children': ['196', '197']}; {'id': '196', 'type': 'string', 'children': [], 'value': "'FT'"}, {'id': '197', 'type': 'call', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '199', 'type': 'argument_list', 'children': ['200']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'timesort'}, {'id': '201', 'type': 'keyword_argument', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'origin'}, {'id': '203', 'type': 'string', 'children': [], 'value': "b'tasklib.concat'"}; {'id': '204', 'type': 'if_statement', 'children': ['205', '206']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'timesort'}; {'id': '206', 'type': 'block', 'children': ['207']}, {'id': '207', 'type': 'expression_statement', 'children': ['208']}; {'id': '208', 'type': 'call', 'children': ['209', '212']}, {'id': '209', 'type': 'attribute', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'ms'}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'timesort'}; {'id': '212', 'type': 'argument_list', 'children': []}, {'id': '213', 'type': 'expression_statement', 'children': ['214']}; {'id': '214', 'type': 'call', 'children': ['215', '218']}, {'id': '215', 'type': 'attribute', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'ms'}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'close'} | def concat(invises, outvis, timesort=False):
tb = util.tools.table()
ms = util.tools.ms()
if os.path.exists(outvis):
raise RuntimeError('output "%s" already exists' % outvis)
for invis in invises:
if not os.path.isdir(invis):
raise RuntimeError('input "%s" does not exist' % invis)
tb.open(b(invises[0]))
tb.copy(b(outvis), deep=True, valuecopy=True)
tb.close()
ms.open(b(outvis), nomodify=False)
for invis in invises[1:]:
ms.concatenate(msfile=b(invis), freqtol=b(concat_freqtol),
dirtol=b(concat_dirtol))
ms.writehistory(message=b'taskname=tasklib.concat', origin=b'tasklib.concat')
ms.writehistory(message=b('vis = ' + ', '.join(invises)), origin=b'tasklib.concat')
ms.writehistory(message=b('timesort = ' + 'FT'[int(timesort)]), origin=b'tasklib.concat')
if timesort:
ms.timesort()
ms.close() |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_zones_of_account'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'account_name'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'q'}; {'id': '8', 'type': 'None', 'children': []}, {'id': '9', 'type': 'dictionary_splat_pattern', 'children': ['10']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '11', 'type': 'block', 'children': ['12', '20', '28']}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'uri'}, {'id': '15', 'type': 'binary_operator', 'children': ['16', '19'], 'value': '+'}; {'id': '16', 'type': 'binary_operator', 'children': ['17', '18'], 'value': '+'}, {'id': '17', 'type': 'string', 'children': [], 'value': '"/v1/accounts/"'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'account_name'}, {'id': '19', 'type': 'string', 'children': [], 'value': '"/zones"'}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '23', 'type': 'call', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'build_params'}, {'id': '25', 'type': 'argument_list', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'q'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '28', 'type': 'return_statement', 'children': ['29']}, {'id': '29', 'type': 'call', 'children': ['30', '35']}; {'id': '30', 'type': 'attribute', 'children': ['31', '34']}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'rest_api_connection'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '35', 'type': 'argument_list', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'uri'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'params'} | def get_zones_of_account(self, account_name, q=None, **kwargs):
uri = "/v1/accounts/" + account_name + "/zones"
params = build_params(q, kwargs)
return self.rest_api_connection.get(uri, params) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_zones'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'q'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'dictionary_splat_pattern', 'children': ['9']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '10', 'type': 'block', 'children': ['11', '15', '23']}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'uri'}; {'id': '14', 'type': 'string', 'children': [], 'value': '"/v1/zones"'}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '18', 'type': 'call', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'build_params'}; {'id': '20', 'type': 'argument_list', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'q'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '23', 'type': 'return_statement', 'children': ['24']}; {'id': '24', 'type': 'call', 'children': ['25', '30']}, {'id': '25', 'type': 'attribute', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'rest_api_connection'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '30', 'type': 'argument_list', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'uri'} | def get_zones(self, q=None, **kwargs):
uri = "/v1/zones"
params = build_params(q, kwargs)
return self.rest_api_connection.get(uri, params) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_rrsets'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'zone_name'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'q'}; {'id': '8', 'type': 'None', 'children': []}, {'id': '9', 'type': 'dictionary_splat_pattern', 'children': ['10']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '11', 'type': 'block', 'children': ['12', '20', '28']}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'uri'}, {'id': '15', 'type': 'binary_operator', 'children': ['16', '19'], 'value': '+'}; {'id': '16', 'type': 'binary_operator', 'children': ['17', '18'], 'value': '+'}, {'id': '17', 'type': 'string', 'children': [], 'value': '"/v1/zones/"'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'zone_name'}, {'id': '19', 'type': 'string', 'children': [], 'value': '"/rrsets"'}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '23', 'type': 'call', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'build_params'}, {'id': '25', 'type': 'argument_list', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'q'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '28', 'type': 'return_statement', 'children': ['29']}, {'id': '29', 'type': 'call', 'children': ['30', '35']}; {'id': '30', 'type': 'attribute', 'children': ['31', '34']}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'rest_api_connection'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '35', 'type': 'argument_list', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'uri'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'params'} | def get_rrsets(self, zone_name, q=None, **kwargs):
uri = "/v1/zones/" + zone_name + "/rrsets"
params = build_params(q, kwargs)
return self.rest_api_connection.get(uri, params) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'nested_tuple'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'container'}, {'id': '5', 'type': 'block', 'children': ['6', '26', '49', '107']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '12']}, {'id': '7', 'type': 'call', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '9', 'type': 'argument_list', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'container'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'}; {'id': '12', 'type': 'block', 'children': ['13']}, {'id': '13', 'type': 'return_statement', 'children': ['14']}; {'id': '14', 'type': 'call', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'tuple'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}, {'id': '17', 'type': 'call', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'map'}, {'id': '19', 'type': 'argument_list', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'nested_tuple'}, {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'container'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '25', 'type': 'argument_list', 'children': []}; {'id': '26', 'type': 'if_statement', 'children': ['27', '32']}, {'id': '27', 'type': 'call', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '29', 'type': 'argument_list', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'container'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'Mapping'}; {'id': '32', 'type': 'block', 'children': ['33']}, {'id': '33', 'type': 'return_statement', 'children': ['34']}; {'id': '34', 'type': 'call', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'tuple'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}, {'id': '37', 'type': 'call', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'sorted_if_possible'}, {'id': '39', 'type': 'argument_list', 'children': ['40']}; {'id': '40', 'type': 'call', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'map'}; {'id': '42', 'type': 'argument_list', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'nested_tuple'}; {'id': '44', 'type': 'call', 'children': ['45', '48']}, {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'container'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '48', 'type': 'argument_list', 'children': []}, {'id': '49', 'type': 'if_statement', 'children': ['50', '58']}; {'id': '50', 'type': 'not_operator', 'children': ['51']}, {'id': '51', 'type': 'call', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '53', 'type': 'argument_list', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'container'}, {'id': '55', 'type': 'tuple', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'bytes'}; {'id': '58', 'type': 'block', 'children': ['59', '75']}, {'id': '59', 'type': 'if_statement', 'children': ['60', '65']}; {'id': '60', 'type': 'call', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '62', 'type': 'argument_list', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'container'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'Sequence'}, {'id': '65', 'type': 'block', 'children': ['66']}; {'id': '66', 'type': 'return_statement', 'children': ['67']}, {'id': '67', 'type': 'call', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'tuple'}, {'id': '69', 'type': 'argument_list', 'children': ['70']}; {'id': '70', 'type': 'call', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'map'}; {'id': '72', 'type': 'argument_list', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'nested_tuple'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'container'}, {'id': '75', 'type': 'if_statement', 'children': ['76', '94']}; {'id': '76', 'type': 'parenthesized_expression', 'children': ['77'], 'value': '()'}, {'id': '77', 'type': 'boolean_operator', 'children': ['78', '89'], 'value': 'and'}; {'id': '78', 'type': 'boolean_operator', 'children': ['79', '84'], 'value': 'and'}, {'id': '79', 'type': 'call', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '81', 'type': 'argument_list', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'container'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'Container'}; {'id': '84', 'type': 'call', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '86', 'type': 'argument_list', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'container'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'Iterable'}, {'id': '89', 'type': 'call', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '91', 'type': 'argument_list', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'container'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'Sized'}; {'id': '94', 'type': 'block', 'children': ['95']}, {'id': '95', 'type': 'return_statement', 'children': ['96']}; {'id': '96', 'type': 'call', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'tuple'}; {'id': '98', 'type': 'argument_list', 'children': ['99']}, {'id': '99', 'type': 'call', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'sorted_if_possible'}, {'id': '101', 'type': 'argument_list', 'children': ['102']}; {'id': '102', 'type': 'call', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'map'}; {'id': '104', 'type': 'argument_list', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'nested_tuple'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'container'}, {'id': '107', 'type': 'return_statement', 'children': ['108']} | def nested_tuple(container):
if isinstance(container, OrderedDict):
return tuple(map(nested_tuple, container.items()))
if isinstance(container, Mapping):
return tuple(sorted_if_possible(map(nested_tuple, container.items())))
if not isinstance(container, (str, bytes)):
if isinstance(container, Sequence):
return tuple(map(nested_tuple, container))
if (
isinstance(container, Container)
and isinstance(container, Iterable)
and isinstance(container, Sized)
):
return tuple(sorted_if_possible(map(nested_tuple, container)))
return container |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_ranges_key'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'r'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'delta_indices'}; {'id': '6', 'type': 'block', 'children': ['7', '13']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'idx'}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'r'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'index_symbol'}, {'id': '13', 'type': 'if_statement', 'children': ['14', '17', '30']}; {'id': '14', 'type': 'comparison_operator', 'children': ['15', '16'], 'value': 'in'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'idx'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'delta_indices'}, {'id': '17', 'type': 'block', 'children': ['18']}; {'id': '18', 'type': 'return_statement', 'children': ['19']}, {'id': '19', 'type': 'tuple', 'children': ['20', '25']}; {'id': '20', 'type': 'attribute', 'children': ['21', '24']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'r'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'index_symbol'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'primed'}, {'id': '25', 'type': 'attribute', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'r'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'index_symbol'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '30', 'type': 'else_clause', 'children': ['31']}, {'id': '31', 'type': 'block', 'children': ['32']}; {'id': '32', 'type': 'return_statement', 'children': ['33']}, {'id': '33', 'type': 'tuple', 'children': ['34', '35']}; {'id': '34', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '35', 'type': 'string', 'children': [], 'value': "' '"} | def _ranges_key(r, delta_indices):
idx = r.index_symbol
if idx in delta_indices:
return (r.index_symbol.primed, r.index_symbol.name)
else:
return (0, ' ') |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '15']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'plot'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'row_order'}; {'id': '8', 'type': 'None', 'children': []}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'imshow_kwargs'}, {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'strip'}; {'id': '14', 'type': 'True', 'children': []}, {'id': '15', 'type': 'block', 'children': ['16', '26', '40', '54', '67', '76', '91', '101', '132', '147', '155', '172', '217', '224', '245', '254', '316', '328', '334']}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'nrows'}, {'id': '19', 'type': 'subscript', 'children': ['20', '25']}; {'id': '20', 'type': 'attribute', 'children': ['21', '24']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'diffed_array'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'shape'}, {'id': '25', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '26', 'type': 'if_statement', 'children': ['27', '30']}, {'id': '27', 'type': 'comparison_operator', 'children': ['28', '29'], 'value': 'is'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'row_order'}, {'id': '29', 'type': 'None', 'children': []}; {'id': '30', 'type': 'block', 'children': ['31']}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'row_order'}; {'id': '34', 'type': 'call', 'children': ['35', '38']}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'arange'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'nrows'}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'assignment', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'extent'}, {'id': '43', 'type': 'tuple', 'children': ['44', '48', '52', '53']}; {'id': '44', 'type': 'call', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'min'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '48', 'type': 'call', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'max'}; {'id': '50', 'type': 'argument_list', 'children': ['51']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '52', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'nrows'}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}, {'id': '55', 'type': 'assignment', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'axes_info'}, {'id': '57', 'type': 'call', 'children': ['58', '63']}; {'id': '58', 'type': 'attribute', 'children': ['59', '62']}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'metaseq'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'plotutils'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'matrix_and_line_shell'}, {'id': '63', 'type': 'argument_list', 'children': ['64']}; {'id': '64', 'type': 'keyword_argument', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'strip'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'strip'}, {'id': '67', 'type': 'expression_statement', 'children': ['68']}; {'id': '68', 'type': 'assignment', 'children': ['69', '75']}, {'id': '69', 'type': 'pattern_list', 'children': ['70', '71', '72', '73', '74']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'fig'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'matrix_ax'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'line_ax'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'strip_ax'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'cbar_ax'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'axes_info'}; {'id': '76', 'type': 'expression_statement', 'children': ['77']}, {'id': '77', 'type': 'assignment', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': '_imshow_kwargs'}, {'id': '79', 'type': 'call', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'dict'}, {'id': '81', 'type': 'argument_list', 'children': ['82', '85', '88']}; {'id': '82', 'type': 'keyword_argument', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'aspect'}; {'id': '84', 'type': 'string', 'children': [], 'value': "'auto'"}, {'id': '85', 'type': 'keyword_argument', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'extent'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'extent'}; {'id': '88', 'type': 'keyword_argument', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'interpolation'}; {'id': '90', 'type': 'string', 'children': [], 'value': "'nearest'"}, {'id': '91', 'type': 'if_statement', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'imshow_kwargs'}, {'id': '93', 'type': 'block', 'children': ['94']}; {'id': '94', 'type': 'expression_statement', 'children': ['95']}, {'id': '95', 'type': 'call', 'children': ['96', '99']}; {'id': '96', 'type': 'attribute', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': '_imshow_kwargs'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'update'}, {'id': '99', 'type': 'argument_list', 'children': ['100']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'imshow_kwargs'}, {'id': '101', 'type': 'if_statement', 'children': ['102', '105']}; {'id': '102', 'type': 'comparison_operator', 'children': ['103', '104'], 'value': 'not'}, {'id': '103', 'type': 'string', 'children': [], 'value': "'cmap'"}; {'id': '104', 'type': 'identifier', 'children': [], 'value': '_imshow_kwargs'}, {'id': '105', 'type': 'block', 'children': ['106']}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}, {'id': '107', 'type': 'assignment', 'children': ['108', '111']}; {'id': '108', 'type': 'subscript', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': '_imshow_kwargs'}; {'id': '110', 'type': 'string', 'children': [], 'value': "'cmap'"}, {'id': '111', 'type': 'call', 'children': ['112', '117']}; {'id': '112', 'type': 'attribute', 'children': ['113', '116']}, {'id': '113', 'type': 'attribute', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'metaseq'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'colormap_adjust'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'smart_colormap'}, {'id': '117', 'type': 'argument_list', 'children': ['118', '125']}; {'id': '118', 'type': 'call', 'children': ['119', '124']}, {'id': '119', 'type': 'attribute', 'children': ['120', '123']}; {'id': '120', 'type': 'attribute', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'diffed_array'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'min'}; {'id': '124', 'type': 'argument_list', 'children': []}, {'id': '125', 'type': 'call', 'children': ['126', '131']}; {'id': '126', 'type': 'attribute', 'children': ['127', '130']}, {'id': '127', 'type': 'attribute', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'diffed_array'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'max'}, {'id': '131', 'type': 'argument_list', 'children': []}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'assignment', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'mappable'}, {'id': '135', 'type': 'call', 'children': ['136', '139']}; {'id': '136', 'type': 'attribute', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'matrix_ax'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'imshow'}, {'id': '139', 'type': 'argument_list', 'children': ['140', '145']}; {'id': '140', 'type': 'subscript', 'children': ['141', '144']}, {'id': '141', 'type': 'attribute', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'diffed_array'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'row_order'}, {'id': '145', 'type': 'dictionary_splat', 'children': ['146']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': '_imshow_kwargs'}, {'id': '147', 'type': 'expression_statement', 'children': ['148']}; {'id': '148', 'type': 'call', 'children': ['149', '152']}, {'id': '149', 'type': 'attribute', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'plt'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'colorbar'}; {'id': '152', 'type': 'argument_list', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'mappable'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'cbar_ax'}, {'id': '155', 'type': 'expression_statement', 'children': ['156']}; {'id': '156', 'type': 'call', 'children': ['157', '160']}, {'id': '157', 'type': 'attribute', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'line_ax'}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'plot'}; {'id': '160', 'type': 'argument_list', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '162', 'type': 'call', 'children': ['163', '168']}, {'id': '163', 'type': 'attribute', 'children': ['164', '167']}; {'id': '164', 'type': 'attribute', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'diffed_array'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'mean'}; {'id': '168', 'type': 'argument_list', 'children': ['169']}, {'id': '169', 'type': 'keyword_argument', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'axis'}, {'id': '171', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '172', 'type': 'if_statement', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'strip_ax'}; {'id': '174', 'type': 'block', 'children': ['175', '203', '211']}, {'id': '175', 'type': 'expression_statement', 'children': ['176']}; {'id': '176', 'type': 'assignment', 'children': ['177', '179']}, {'id': '177', 'type': 'pattern_list', 'children': ['178']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '179', 'type': 'call', 'children': ['180', '183']}; {'id': '180', 'type': 'attribute', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'strip_ax'}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'plot'}, {'id': '183', 'type': 'argument_list', 'children': ['184', '191', '199']}; {'id': '184', 'type': 'call', 'children': ['185', '188']}, {'id': '185', 'type': 'attribute', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'zeros'}; {'id': '188', 'type': 'argument_list', 'children': ['189']}, {'id': '189', 'type': 'tuple', 'children': ['190']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'nrows'}, {'id': '191', 'type': 'binary_operator', 'children': ['192', '198'], 'value': '+'}; {'id': '192', 'type': 'call', 'children': ['193', '196']}, {'id': '193', 'type': 'attribute', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'arange'}; {'id': '196', 'type': 'argument_list', 'children': ['197']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'nrows'}; {'id': '198', 'type': 'float', 'children': [], 'value': '0.5'}, {'id': '199', 'type': 'dictionary_splat', 'children': ['200']}; {'id': '200', 'type': 'attribute', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': '_strip_kwargs'}, {'id': '203', 'type': 'expression_statement', 'children': ['204']}; {'id': '204', 'type': 'assignment', 'children': ['205', '208']}, {'id': '205', 'type': 'attribute', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'features'}; {'id': '208', 'type': 'attribute', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'features'}, {'id': '211', 'type': 'expression_statement', 'children': ['212']}; {'id': '212', 'type': 'assignment', 'children': ['213', '216']}, {'id': '213', 'type': 'attribute', 'children': ['214', '215']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'ind'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'row_order'}, {'id': '217', 'type': 'expression_statement', 'children': ['218']}; {'id': '218', 'type': 'call', 'children': ['219', '222']}, {'id': '219', 'type': 'attribute', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'matrix_ax'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'axis'}; {'id': '222', 'type': 'argument_list', 'children': ['223']}, {'id': '223', 'type': 'string', 'children': [], 'value': "'tight'"}; {'id': '224', 'type': 'if_statement', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'strip_ax'}; {'id': '226', 'type': 'block', 'children': ['227', '236']}, {'id': '227', 'type': 'expression_statement', 'children': ['228']}; {'id': '228', 'type': 'call', 'children': ['229', '234']}, {'id': '229', 'type': 'attribute', 'children': ['230', '233']}; {'id': '230', 'type': 'attribute', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'strip_ax'}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'xaxis'}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'set_visible'}; {'id': '234', 'type': 'argument_list', 'children': ['235']}, {'id': '235', 'type': 'False', 'children': []}; {'id': '236', 'type': 'expression_statement', 'children': ['237']}, {'id': '237', 'type': 'call', 'children': ['238', '243']}; {'id': '238', 'type': 'attribute', 'children': ['239', '242']}, {'id': '239', 'type': 'attribute', 'children': ['240', '241']}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'matrix_ax'}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'yaxis'}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'set_visible'}, {'id': '243', 'type': 'argument_list', 'children': ['244']}; {'id': '244', 'type': 'False', 'children': []}, {'id': '245', 'type': 'expression_statement', 'children': ['246']}; {'id': '246', 'type': 'call', 'children': ['247', '252']}, {'id': '247', 'type': 'attribute', 'children': ['248', '251']}; {'id': '248', 'type': 'attribute', 'children': ['249', '250']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'matrix_ax'}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'xaxis'}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'set_visible'}; {'id': '252', 'type': 'argument_list', 'children': ['253']}, {'id': '253', 'type': 'False', 'children': []}; {'id': '254', 'type': 'if_statement', 'children': ['255', '258', '289']}, {'id': '255', 'type': 'attribute', 'children': ['256', '257']}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'db'}; {'id': '258', 'type': 'block', 'children': ['259']}, {'id': '259', 'type': 'expression_statement', 'children': ['260']}; {'id': '260', 'type': 'assignment', 'children': ['261', '264']}, {'id': '261', 'type': 'attribute', 'children': ['262', '263']}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'minibrowser'}; {'id': '264', 'type': 'call', 'children': ['265', '266']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'GeneChipseqMiniBrowser'}; {'id': '266', 'type': 'argument_list', 'children': ['267', '274', '279', '284']}, {'id': '267', 'type': 'list', 'children': ['268', '271'], 'value': '[self.ip, self.control]'}; {'id': '268', 'type': 'attribute', 'children': ['269', '270']}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'ip'}, {'id': '271', 'type': 'attribute', 'children': ['272', '273']}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'control'}; {'id': '274', 'type': 'keyword_argument', 'children': ['275', '276']}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'db'}; {'id': '276', 'type': 'attribute', 'children': ['277', '278']}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'db'}, {'id': '279', 'type': 'keyword_argument', 'children': ['280', '281']}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'plotting_kwargs'}, {'id': '281', 'type': 'attribute', 'children': ['282', '283']}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'browser_plotting_kwargs'}; {'id': '284', 'type': 'keyword_argument', 'children': ['285', '286']}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'local_coverage_kwargs'}; 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{'id': '300', 'type': 'attribute', 'children': ['301', '302']}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '302', 'type': 'identifier', 'children': [], 'value': 'ip'}, {'id': '303', 'type': 'attribute', 'children': ['304', '305']}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'control'}; {'id': '306', 'type': 'keyword_argument', 'children': ['307', '308']}, {'id': '307', 'type': 'identifier', 'children': [], 'value': 'plotting_kwargs'}; {'id': '308', 'type': 'attribute', 'children': ['309', '310']}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '310', 'type': 'identifier', 'children': [], 'value': 'browser_plotting_kwargs'}, {'id': '311', 'type': 'keyword_argument', 'children': ['312', '313']}; {'id': '312', 'type': 'identifier', 'children': [], 'value': 'local_coverage_kwargs'}, {'id': '313', 'type': 'attribute', 'children': ['314', '315']}; {'id': '314', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '315', 'type': 'identifier', 'children': [], 'value': 'browser_local_coverage_kwargs'}; {'id': '316', 'type': 'expression_statement', 'children': ['317']}, {'id': '317', 'type': 'call', 'children': ['318', '323']}; {'id': '318', 'type': 'attribute', 'children': ['319', '322']}, {'id': '319', 'type': 'attribute', 'children': ['320', '321']}; {'id': '320', 'type': 'identifier', 'children': [], 'value': 'fig'}, {'id': '321', 'type': 'identifier', 'children': [], 'value': 'canvas'}; {'id': '322', 'type': 'identifier', 'children': [], 'value': 'mpl_connect'}, {'id': '323', 'type': 'argument_list', 'children': ['324', '325']}; {'id': '324', 'type': 'string', 'children': [], 'value': "'pick_event'"}, {'id': '325', 'type': 'attribute', 'children': ['326', '327']}; {'id': '326', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '327', 'type': 'identifier', 'children': [], 'value': 'callback'}; {'id': '328', 'type': 'expression_statement', 'children': ['329']}, {'id': '329', 'type': 'assignment', 'children': ['330', '333']}; {'id': '330', 'type': 'attribute', 'children': ['331', '332']}, {'id': '331', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '332', 'type': 'identifier', 'children': [], 'value': 'fig'}, {'id': '333', 'type': 'identifier', 'children': [], 'value': 'fig'}; {'id': '334', 'type': 'expression_statement', 'children': ['335']}, {'id': '335', 'type': 'assignment', 'children': ['336', '339']}; {'id': '336', 'type': 'attribute', 'children': ['337', '338']}, {'id': '337', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '338', 'type': 'identifier', 'children': [], 'value': 'axes'}, {'id': '339', 'type': 'dictionary', 'children': ['340', '343', '346', '349']}; {'id': '340', 'type': 'pair', 'children': ['341', '342']}, {'id': '341', 'type': 'string', 'children': [], 'value': "'matrix_ax'"}; {'id': '342', 'type': 'identifier', 'children': [], 'value': 'matrix_ax'}, {'id': '343', 'type': 'pair', 'children': ['344', '345']}; {'id': '344', 'type': 'string', 'children': [], 'value': "'strip_ax'"}, {'id': '345', 'type': 'identifier', 'children': [], 'value': 'strip_ax'}; {'id': '346', 'type': 'pair', 'children': ['347', '348']}, {'id': '347', 'type': 'string', 'children': [], 'value': "'line_ax'"}; {'id': '348', 'type': 'identifier', 'children': [], 'value': 'line_ax'}, {'id': '349', 'type': 'pair', 'children': ['350', '351']}; {'id': '350', 'type': 'string', 'children': [], 'value': "'cbar_ax'"}, {'id': '351', 'type': 'identifier', 'children': [], 'value': 'cbar_ax'} | def plot(self, x, row_order=None, imshow_kwargs=None, strip=True):
nrows = self.diffed_array.shape[0]
if row_order is None:
row_order = np.arange(nrows)
extent = (min(x), max(x), 0, nrows)
axes_info = metaseq.plotutils.matrix_and_line_shell(strip=strip)
fig, matrix_ax, line_ax, strip_ax, cbar_ax = axes_info
_imshow_kwargs = dict(
aspect='auto', extent=extent, interpolation='nearest')
if imshow_kwargs:
_imshow_kwargs.update(imshow_kwargs)
if 'cmap' not in _imshow_kwargs:
_imshow_kwargs['cmap'] = metaseq.colormap_adjust.smart_colormap(
self.diffed_array.min(),
self.diffed_array.max()
)
mappable = matrix_ax.imshow(
self.diffed_array[row_order],
**_imshow_kwargs)
plt.colorbar(mappable, cbar_ax)
line_ax.plot(x, self.diffed_array.mean(axis=0))
if strip_ax:
line, = strip_ax.plot(np.zeros((nrows,)), np.arange(nrows) + 0.5,
**self._strip_kwargs)
line.features = self.features
line.ind = row_order
matrix_ax.axis('tight')
if strip_ax:
strip_ax.xaxis.set_visible(False)
matrix_ax.yaxis.set_visible(False)
matrix_ax.xaxis.set_visible(False)
if self.db:
self.minibrowser = GeneChipseqMiniBrowser(
[self.ip, self.control],
db=self.db,
plotting_kwargs=self.browser_plotting_kwargs,
local_coverage_kwargs=self.browser_local_coverage_kwargs)
else:
self.minibrowser = SignalChipseqMiniBrowser(
[self.ip, self.control],
plotting_kwargs=self.browser_plotting_kwargs,
local_coverage_kwargs=self.browser_local_coverage_kwargs)
fig.canvas.mpl_connect('pick_event', self.callback)
self.fig = fig
self.axes = {
'matrix_ax': matrix_ax,
'strip_ax': strip_ax,
'line_ax': line_ax,
'cbar_ax': cbar_ax
} |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_restricted_growth_notation'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'l'}, {'id': '5', 'type': 'block', 'children': ['6', '13', '20', '38', '45', '74']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'list_length'}, {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '11', 'type': 'argument_list', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'l'}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '16', 'type': 'call', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'defaultdict'}; {'id': '18', 'type': 'argument_list', 'children': ['19']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '20', 'type': 'for_statement', 'children': ['21', '24', '28']}, {'id': '21', 'type': 'tuple_pattern', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'element'}; {'id': '24', 'type': 'call', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '28', 'type': 'block', 'children': ['29']}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'call', 'children': ['31', '36']}, {'id': '31', 'type': 'attribute', 'children': ['32', '35']}; {'id': '32', 'type': 'subscript', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'element'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'assignment', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'l2'}, {'id': '41', 'type': 'binary_operator', 'children': ['42', '44'], 'value': '*'}; {'id': '42', 'type': 'list', 'children': ['43'], 'value': '[None]'}, {'id': '43', 'type': 'None', 'children': []}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'list_length'}, {'id': '45', 'type': 'for_statement', 'children': ['46', '49', '63']}; {'id': '46', 'type': 'tuple_pattern', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'index_list'}, {'id': '49', 'type': 'call', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'enumerate'}, {'id': '51', 'type': 'argument_list', 'children': ['52']}; {'id': '52', 'type': 'call', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '54', 'type': 'argument_list', 'children': ['55', '60']}, {'id': '55', 'type': 'call', 'children': ['56', '59']}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '59', 'type': 'argument_list', 'children': []}; {'id': '60', 'type': 'keyword_argument', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'min'}, {'id': '63', 'type': 'block', 'children': ['64']}; {'id': '64', 'type': 'for_statement', 'children': ['65', '66', '67']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'index_list'}, {'id': '67', 'type': 'block', 'children': ['68']}; {'id': '68', 'type': 'expression_statement', 'children': ['69']}, {'id': '69', 'type': 'assignment', 'children': ['70', '73']}; {'id': '70', 'type': 'subscript', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'l2'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '74', 'type': 'return_statement', 'children': ['75']}, {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'tuple'}, {'id': '77', 'type': 'argument_list', 'children': ['78']} | def _restricted_growth_notation(l):
list_length = len(l)
d = defaultdict(list)
for (i, element) in enumerate(l):
d[element].append(i)
l2 = [None] * list_length
for (name, index_list) in enumerate(sorted(d.values(), key=min)):
for index in index_list:
l2[index] = name
return tuple(l2) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'insort_no_dup'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'lst'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '6', 'type': 'block', 'children': ['7', '10', '20']}, {'id': '7', 'type': 'import_statement', 'children': ['8']}; {'id': '8', 'type': 'dotted_name', 'children': ['9']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'bisect'}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}, {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'ix'}, {'id': '13', 'type': 'call', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'bisect'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'bisect_left'}, {'id': '17', 'type': 'argument_list', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'lst'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '20', 'type': 'if_statement', 'children': ['21', '26']}, {'id': '21', 'type': 'comparison_operator', 'children': ['22', '25'], 'value': '!='}; {'id': '22', 'type': 'subscript', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'lst'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'ix'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '26', 'type': 'block', 'children': ['27']}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '35']}, {'id': '29', 'type': 'subscript', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'lst'}, {'id': '31', 'type': 'slice', 'children': ['32', '33', '34']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'ix'}, {'id': '33', 'type': 'colon', 'children': []}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'ix'}, {'id': '35', 'type': 'list', 'children': ['36'], 'value': '[item]'} | def insort_no_dup(lst, item):
import bisect
ix = bisect.bisect_left(lst, item)
if lst[ix] != item:
lst[ix:ix] = [item] |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'records'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6']}; {'id': '6', 'type': 'return_statement', 'children': ['7']}, {'id': '7', 'type': 'list_comprehension', 'children': ['8', '13']}; {'id': '8', 'type': 'subscript', 'children': ['9', '12']}, {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': '_records'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '13', 'type': 'for_in_clause', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'call', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '20', 'type': 'argument_list', 'children': ['21']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': '_records'} | def records(self):
return [self._records[i] for i in range(len(self._records))] |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'score'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'phone_number'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'account_lifecycle_event'}, {'id': '7', 'type': 'dictionary_splat_pattern', 'children': ['8']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '9', 'type': 'block', 'children': ['10']}; {'id': '10', 'type': 'return_statement', 'children': ['11']}, {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'post'}, {'id': '15', 'type': 'argument_list', 'children': ['16', '24', '27']}; {'id': '16', 'type': 'call', 'children': ['17', '20']}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'SCORE_RESOURCE'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '20', 'type': 'argument_list', 'children': ['21']}, {'id': '21', 'type': 'keyword_argument', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'phone_number'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'phone_number'}; {'id': '24', 'type': 'keyword_argument', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'account_lifecycle_event'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'account_lifecycle_event'}, {'id': '27', 'type': 'dictionary_splat', 'children': ['28']} | def score(self, phone_number, account_lifecycle_event, **params):
return self.post(SCORE_RESOURCE.format(phone_number=phone_number),
account_lifecycle_event=account_lifecycle_event,
**params) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sorted_members'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '14', '26', '57', '83']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'members'}, {'id': '9', 'type': 'call', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'collections'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'}, {'id': '13', 'type': 'argument_list', 'children': []}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'assignment', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'required_names'}, {'id': '17', 'type': 'call', 'children': ['18', '23']}; {'id': '18', 'type': 'attribute', 'children': ['19', '22']}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'metadata'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '23', 'type': 'argument_list', 'children': ['24', '25']}; {'id': '24', 'type': 'string', 'children': [], 'value': '"required"'}, {'id': '25', 'type': 'tuple', 'children': []}; {'id': '26', 'type': 'for_statement', 'children': ['27', '30', '37']}, {'id': '27', 'type': 'pattern_list', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'shape'}; {'id': '30', 'type': 'call', 'children': ['31', '36']}, {'id': '31', 'type': 'attribute', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'members'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '36', 'type': 'argument_list', 'children': []}, {'id': '37', 'type': 'block', 'children': ['38']}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'assignment', 'children': ['40', '43']}; {'id': '40', 'type': 'subscript', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'members'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '43', 'type': 'call', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'AbShapeMember'}, {'id': '45', 'type': 'argument_list', 'children': ['46', '49', '52']}; {'id': '46', 'type': 'keyword_argument', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '49', 'type': 'keyword_argument', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'shape'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'shape'}; {'id': '52', 'type': 'keyword_argument', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'is_required'}; {'id': '54', 'type': 'comparison_operator', 'children': ['55', '56'], 'value': 'in'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'required_names'}, {'id': '57', 'type': 'if_statement', 'children': ['58', '61']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'is_output_shape'}, {'id': '61', 'type': 'block', 'children': ['62']}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}, {'id': '63', 'type': 'yield', 'children': ['64']}; {'id': '64', 'type': 'call', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'AbShapeMember'}; {'id': '66', 'type': 'argument_list', 'children': ['67', '70', '80']}, {'id': '67', 'type': 'keyword_argument', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '69', 'type': 'string', 'children': [], 'value': '"ResponseMetadata"'}; {'id': '70', 'type': 'keyword_argument', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'shape'}; {'id': '72', 'type': 'call', 'children': ['73', '78']}, {'id': '73', 'type': 'attribute', 'children': ['74', '77']}; {'id': '74', 'type': 'attribute', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': '_shape_resolver'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'get_shape_by_name'}; {'id': '78', 'type': 'argument_list', 'children': ['79']}, {'id': '79', 'type': 'string', 'children': [], 'value': '"ResponseMetadata"'}; {'id': '80', 'type': 'keyword_argument', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'is_required'}; {'id': '82', 'type': 'True', 'children': []}, {'id': '83', 'type': 'expression_statement', 'children': ['84']}; {'id': '84', 'type': 'yield', 'children': ['85']}, {'id': '85', 'type': 'call', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '87', 'type': 'argument_list', 'children': ['88', '93']}; {'id': '88', 'type': 'call', 'children': ['89', '92']}, {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'members'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '92', 'type': 'argument_list', 'children': []}, {'id': '93', 'type': 'keyword_argument', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '95', 'type': 'lambda', 'children': ['96', '98']}; {'id': '96', 'type': 'lambda_parameters', 'children': ['97']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'm'}; {'id': '98', 'type': 'not_operator', 'children': ['99']}, {'id': '99', 'type': 'attribute', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'm'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'is_required'} | def sorted_members(self):
members = collections.OrderedDict()
required_names = self.metadata.get("required", ())
for name, shape in self.members.items():
members[name] = AbShapeMember(name=name, shape=shape, is_required=name in required_names)
if self.is_output_shape:
yield AbShapeMember(
name="ResponseMetadata",
shape=self._shape_resolver.get_shape_by_name("ResponseMetadata"),
is_required=True,
)
yield from sorted(members.values(), key=lambda m: not m.is_required) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'threshold_brier_score'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'observations'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'forecasts'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'threshold'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'issorted'}, {'id': '9', 'type': 'False', 'children': []}; {'id': '10', 'type': 'default_parameter', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'axis'}; {'id': '12', 'type': 'unary_operator', 'children': ['13'], 'value': '-'}, {'id': '13', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '14', 'type': 'block', 'children': ['15', '24', '33', '42', '56', '74', '97', '105', '117', '144', '162', '179', '188', '203']}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'observations'}; {'id': '18', 'type': 'call', 'children': ['19', '22']}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'asarray'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'observations'}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'threshold'}, {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'asarray'}, {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'threshold'}, {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'forecasts'}; {'id': '36', 'type': 'call', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'asarray'}; {'id': '40', 'type': 'argument_list', 'children': ['41']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'forecasts'}; {'id': '42', 'type': 'if_statement', 'children': ['43', '47']}, {'id': '43', 'type': 'comparison_operator', 'children': ['44', '45'], 'value': '!='}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'axis'}, {'id': '45', 'type': 'unary_operator', 'children': ['46'], 'value': '-'}; {'id': '46', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '47', 'type': 'block', 'children': ['48']}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'assignment', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'forecasts'}, {'id': '51', 'type': 'call', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'move_axis_to_end'}, {'id': '53', 'type': 'argument_list', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'forecasts'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'axis'}; {'id': '56', 'type': 'if_statement', 'children': ['57', '64']}, {'id': '57', 'type': 'comparison_operator', 'children': ['58', '61'], 'value': '=='}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'forecasts'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'shape'}, {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'observations'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'shape'}; {'id': '64', 'type': 'block', 'children': ['65']}, {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'assignment', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'forecasts'}; {'id': '68', 'type': 'subscript', 'children': ['69', '70', '71']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'forecasts'}; {'id': '70', 'type': 'ellipsis', 'children': [], 'value': '...'}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'newaxis'}; {'id': '74', 'type': 'if_statement', 'children': ['75', '87']}, {'id': '75', 'type': 'comparison_operator', 'children': ['76', '79'], 'value': '!='}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'observations'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'shape'}, {'id': '79', 'type': 'subscript', 'children': ['80', '83']}; {'id': '80', 'type': 'attribute', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'forecasts'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'shape'}, {'id': '83', 'type': 'slice', 'children': ['84', '85']}; {'id': '84', 'type': 'colon', 'children': []}, {'id': '85', 'type': 'unary_operator', 'children': ['86'], 'value': '-'}; {'id': '86', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '87', 'type': 'block', 'children': ['88']}; {'id': '88', 'type': 'raise_statement', 'children': ['89']}, {'id': '89', 'type': 'call', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '91', 'type': 'argument_list', 'children': ['92']}; {'id': '92', 'type': 'binary_operator', 'children': ['93', '96'], 'value': '%'}, {'id': '93', 'type': 'concatenated_string', 'children': ['94', '95']}; {'id': '94', 'type': 'string', 'children': [], 'value': "'observations and forecasts must have matching '"}, {'id': '95', 'type': 'string', 'children': [], 'value': "'shapes or matching shapes except along `axis=%s`'"}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'axis'}, {'id': '97', 'type': 'expression_statement', 'children': ['98']}; {'id': '98', 'type': 'assignment', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'scalar_threshold'}; {'id': '100', 'type': 'comparison_operator', 'children': ['101', '104'], 'value': '=='}, {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'threshold'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'ndim'}; {'id': '104', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '105', 'type': 'if_statement', 'children': ['106', '111']}; {'id': '106', 'type': 'comparison_operator', 'children': ['107', '110'], 'value': '>'}, {'id': '107', 'type': 'attribute', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'threshold'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'ndim'}; {'id': '110', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '111', 'type': 'block', 'children': ['112']}; {'id': '112', 'type': 'raise_statement', 'children': ['113']}, {'id': '113', 'type': 'call', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '115', 'type': 'argument_list', 'children': ['116']}; {'id': '116', 'type': 'string', 'children': [], 'value': "'threshold must be scalar or 1-dimensional'"}, {'id': '117', 'type': 'if_statement', 'children': ['118', '138']}; {'id': '118', 'type': 'boolean_operator', 'children': ['119', '124'], 'value': 'and'}, {'id': '119', 'type': 'comparison_operator', 'children': ['120', '123'], 'value': '=='}; {'id': '120', 'type': 'attribute', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'threshold'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'ndim'}, {'id': '123', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '124', 'type': 'not_operator', 'children': ['125']}, {'id': '125', 'type': 'call', 'children': ['126', '137']}; {'id': '126', 'type': 'attribute', 'children': ['127', '136']}, {'id': '127', 'type': 'parenthesized_expression', 'children': ['128'], 'value': '()'}; {'id': '128', 'type': 'comparison_operator', 'children': ['129', '135'], 'value': '=='}, {'id': '129', 'type': 'call', 'children': ['130', '133']}; {'id': '130', 'type': 'attribute', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '133', 'type': 'argument_list', 'children': ['134']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'threshold'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'threshold'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'all'}, {'id': '137', 'type': 'argument_list', 'children': []}; {'id': '138', 'type': 'block', 'children': ['139']}, {'id': '139', 'type': 'raise_statement', 'children': ['140']}; {'id': '140', 'type': 'call', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '142', 'type': 'argument_list', 'children': ['143']}, {'id': '143', 'type': 'string', 'children': [], 'value': "'1D thresholds must be sorted'"}; {'id': '144', 'type': 'expression_statement', 'children': ['145']}, {'id': '145', 'type': 'assignment', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'threshold'}, {'id': '147', 'type': 'call', 'children': ['148', '151']}; {'id': '148', 'type': 'attribute', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'threshold'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'reshape'}, {'id': '151', 'type': 'argument_list', 'children': ['152']}; {'id': '152', 'type': 'binary_operator', 'children': ['153', '159'], 'value': '+'}, {'id': '153', 'type': 'binary_operator', 'children': ['154', '156'], 'value': '*'}; {'id': '154', 'type': 'tuple', 'children': ['155']}, {'id': '155', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '156', 'type': 'attribute', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'observations'}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'ndim'}, {'id': '159', 'type': 'tuple', 'children': ['160']}; {'id': '160', 'type': 'unary_operator', 'children': ['161'], 'value': '-'}, {'id': '161', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '162', 'type': 'if_statement', 'children': ['163', '165']}, {'id': '163', 'type': 'not_operator', 'children': ['164']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'issorted'}, {'id': '165', 'type': 'block', 'children': ['166']}; {'id': '166', 'type': 'expression_statement', 'children': ['167']}, {'id': '167', 'type': 'assignment', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'forecasts'}, {'id': '169', 'type': 'call', 'children': ['170', '173']}; {'id': '170', 'type': 'attribute', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '173', 'type': 'argument_list', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'forecasts'}, {'id': '175', 'type': 'keyword_argument', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'axis'}, {'id': '177', 'type': 'unary_operator', 'children': ['178'], 'value': '-'}; {'id': '178', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '179', 'type': 'expression_statement', 'children': ['180']}; {'id': '180', 'type': 'assignment', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '182', 'type': 'call', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': '_threshold_brier_score_core'}; {'id': '184', 'type': 'argument_list', 'children': ['185', '186', '187']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'observations'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'forecasts'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'threshold'}; {'id': '188', 'type': 'if_statement', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'scalar_threshold'}; {'id': '190', 'type': 'block', 'children': ['191']}, {'id': '191', 'type': 'expression_statement', 'children': ['192']}; {'id': '192', 'type': 'assignment', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '194', 'type': 'call', 'children': ['195', '198']}, {'id': '195', 'type': 'attribute', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'squeeze'}; {'id': '198', 'type': 'argument_list', 'children': ['199']}, {'id': '199', 'type': 'keyword_argument', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'axis'}, {'id': '201', 'type': 'unary_operator', 'children': ['202'], 'value': '-'}; {'id': '202', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '203', 'type': 'return_statement', 'children': ['204']} | def threshold_brier_score(observations, forecasts, threshold, issorted=False,
axis=-1):
observations = np.asarray(observations)
threshold = np.asarray(threshold)
forecasts = np.asarray(forecasts)
if axis != -1:
forecasts = move_axis_to_end(forecasts, axis)
if forecasts.shape == observations.shape:
forecasts = forecasts[..., np.newaxis]
if observations.shape != forecasts.shape[:-1]:
raise ValueError('observations and forecasts must have matching '
'shapes or matching shapes except along `axis=%s`'
% axis)
scalar_threshold = threshold.ndim == 0
if threshold.ndim > 1:
raise ValueError('threshold must be scalar or 1-dimensional')
if threshold.ndim == 1 and not (np.sort(threshold) == threshold).all():
raise ValueError('1D thresholds must be sorted')
threshold = threshold.reshape((1,) * observations.ndim + (-1,))
if not issorted:
forecasts = np.sort(forecasts, axis=-1)
result = _threshold_brier_score_core(observations, forecasts, threshold)
if scalar_threshold:
result = result.squeeze(axis=-1)
return result |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'run'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'N'}, {'id': '7', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'trace_sort'}; {'id': '10', 'type': 'False', 'children': []}, {'id': '11', 'type': 'block', 'children': ['12', '14', '21']}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'string', 'children': [], 'value': "'''Run the sampler, store the history of visited points into\n the member variable ``self.samples`` and the importance weights\n into ``self.weights``.\n .. seealso::\n :py:class:`pypmc.tools.History`\n :param N:\n Integer; the number of samples to be drawn.\n :param trace_sort:\n Bool; if True, return an array containing the responsible\n component of ``self.proposal`` for each sample generated\n during this run.\n .. note::\n This option only works for proposals of type\n :py:class:`pypmc.density.mixture.MixtureDensity`\n .. note::\n If True, the samples will be ordered by the components.\n '''"}; {'id': '14', 'type': 'if_statement', 'children': ['15', '18']}, {'id': '15', 'type': 'comparison_operator', 'children': ['16', '17'], 'value': '=='}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'N'}, {'id': '17', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '18', 'type': 'block', 'children': ['19']}, {'id': '19', 'type': 'return_statement', 'children': ['20']}; {'id': '20', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '21', 'type': 'if_statement', 'children': ['22', '23', '48']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'trace_sort'}, {'id': '23', 'type': 'block', 'children': ['24', '38', '46']}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '29']}; {'id': '26', 'type': 'pattern_list', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'this_samples'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'origin'}, {'id': '29', 'type': 'call', 'children': ['30', '33']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': '_get_samples'}, {'id': '33', 'type': 'argument_list', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'N'}, {'id': '35', 'type': 'keyword_argument', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'trace_sort'}, {'id': '37', 'type': 'True', 'children': []}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'call', 'children': ['40', '43']}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': '_calculate_weights'}, {'id': '43', 'type': 'argument_list', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'this_samples'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'N'}; {'id': '46', 'type': 'return_statement', 'children': ['47']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'origin'}; {'id': '48', 'type': 'else_clause', 'children': ['49']}, {'id': '49', 'type': 'block', 'children': ['50', '62']}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'assignment', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'this_samples'}, {'id': '53', 'type': 'call', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': '_get_samples'}, {'id': '57', 'type': 'argument_list', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'N'}, {'id': '59', 'type': 'keyword_argument', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'trace_sort'}, {'id': '61', 'type': 'False', 'children': []}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}, {'id': '63', 'type': 'call', 'children': ['64', '67']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': '_calculate_weights'}, {'id': '67', 'type': 'argument_list', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'this_samples'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'N'} | def run(self, N=1, trace_sort=False):
'''Run the sampler, store the history of visited points into
the member variable ``self.samples`` and the importance weights
into ``self.weights``.
.. seealso::
:py:class:`pypmc.tools.History`
:param N:
Integer; the number of samples to be drawn.
:param trace_sort:
Bool; if True, return an array containing the responsible
component of ``self.proposal`` for each sample generated
during this run.
.. note::
This option only works for proposals of type
:py:class:`pypmc.density.mixture.MixtureDensity`
.. note::
If True, the samples will be ordered by the components.
'''
if N == 0:
return 0
if trace_sort:
this_samples, origin = self._get_samples(N, trace_sort=True)
self._calculate_weights(this_samples, N)
return origin
else:
this_samples = self._get_samples(N, trace_sort=False)
self._calculate_weights(this_samples, N) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_get_samples'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'N'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'trace_sort'}, {'id': '7', 'type': 'block', 'children': ['8', '19']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'this_run'}, {'id': '11', 'type': 'call', 'children': ['12', '17']}; {'id': '12', 'type': 'attribute', 'children': ['13', '16']}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'samples'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'N'}, {'id': '19', 'type': 'if_statement', 'children': ['20', '21', '51']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'trace_sort'}, {'id': '21', 'type': 'block', 'children': ['22', '47']}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '30']}; {'id': '24', 'type': 'pattern_list', 'children': ['25', '29']}, {'id': '25', 'type': 'subscript', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'this_run'}, {'id': '27', 'type': 'slice', 'children': ['28']}; {'id': '28', 'type': 'colon', 'children': []}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'origin'}; {'id': '30', 'type': 'call', 'children': ['31', '36']}, {'id': '31', 'type': 'attribute', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'proposal'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'propose'}; {'id': '36', 'type': 'argument_list', 'children': ['37', '38', '41', '44']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'N'}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'rng'}, {'id': '41', 'type': 'keyword_argument', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'trace'}, {'id': '43', 'type': 'True', 'children': []}; {'id': '44', 'type': 'keyword_argument', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'shuffle'}; {'id': '46', 'type': 'False', 'children': []}, {'id': '47', 'type': 'return_statement', 'children': ['48']}; {'id': '48', 'type': 'expression_list', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'this_run'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'origin'}, {'id': '51', 'type': 'else_clause', 'children': ['52']}; {'id': '52', 'type': 'block', 'children': ['53', '70']}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '59']}, {'id': '55', 'type': 'subscript', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'this_run'}, {'id': '57', 'type': 'slice', 'children': ['58']}; {'id': '58', 'type': 'colon', 'children': []}, {'id': '59', 'type': 'call', 'children': ['60', '65']}; {'id': '60', 'type': 'attribute', 'children': ['61', '64']}, {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'proposal'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'propose'}, {'id': '65', 'type': 'argument_list', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'N'}, {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'rng'}; {'id': '70', 'type': 'return_statement', 'children': ['71']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'this_run'} | def _get_samples(self, N, trace_sort):
this_run = self.samples.append(N)
if trace_sort:
this_run[:], origin = self.proposal.propose(N, self.rng, trace=True, shuffle=False)
return this_run, origin
else:
this_run[:] = self.proposal.propose(N, self.rng)
return this_run |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'argsort_indices'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'axis'}, {'id': '7', 'type': 'unary_operator', 'children': ['8'], 'value': '-'}; {'id': '8', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '9', 'type': 'block', 'children': ['10', '19', '43', '54']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}, {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '13', 'type': 'call', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'asarray'}, {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'ind'}; {'id': '22', 'type': 'call', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'call', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'ix_'}, {'id': '29', 'type': 'argument_list', 'children': ['30']}; {'id': '30', 'type': 'list_splat', 'children': ['31']}, {'id': '31', 'type': 'list_comprehension', 'children': ['32', '38']}; {'id': '32', 'type': 'call', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'arange'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '38', 'type': 'for_in_clause', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'shape'}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '48']}, {'id': '45', 'type': 'subscript', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'ind'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'axis'}; {'id': '48', 'type': 'call', 'children': ['49', '52']}, {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'argsort'}; {'id': '52', 'type': 'argument_list', 'children': ['53']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'axis'}; {'id': '54', 'type': 'return_statement', 'children': ['55']}, {'id': '55', 'type': 'call', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'tuple'}, {'id': '57', 'type': 'argument_list', 'children': ['58']} | def argsort_indices(a, axis=-1):
a = np.asarray(a)
ind = list(np.ix_(*[np.arange(d) for d in a.shape]))
ind[axis] = a.argsort(axis)
return tuple(ind) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sorted'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'collection'}, {'id': '5', 'type': 'block', 'children': ['6', '16', '40', '99']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '13']}, {'id': '7', 'type': 'comparison_operator', 'children': ['8', '12'], 'value': '<'}; {'id': '8', 'type': 'call', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '10', 'type': 'argument_list', 'children': ['11']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'collection'}; {'id': '12', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '13', 'type': 'block', 'children': ['14']}; {'id': '14', 'type': 'return_statement', 'children': ['15']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'collection'}; {'id': '16', 'type': 'if_statement', 'children': ['17', '22']}, {'id': '17', 'type': 'call', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '19', 'type': 'argument_list', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'collection'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '22', 'type': 'block', 'children': ['23']}, {'id': '23', 'type': 'return_statement', 'children': ['24']}; {'id': '24', 'type': 'call', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '26', 'type': 'argument_list', 'children': ['27', '32']}, {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'collection'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '31', 'type': 'argument_list', 'children': []}; {'id': '32', 'type': 'keyword_argument', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '34', 'type': 'lambda', 'children': ['35', '37']}, {'id': '35', 'type': 'lambda_parameters', 'children': ['36']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '37', 'type': 'subscript', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '39', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '40', 'type': 'if_statement', 'children': ['41', '51', '61', '87']}, {'id': '41', 'type': 'call', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '43', 'type': 'argument_list', 'children': ['44', '50']}; {'id': '44', 'type': 'subscript', 'children': ['45', '49']}, {'id': '45', 'type': 'call', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '47', 'type': 'argument_list', 'children': ['48']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'collection'}, {'id': '49', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'Operation'}, {'id': '51', 'type': 'block', 'children': ['52']}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'assignment', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '55', 'type': 'lambda', 'children': ['56', '58']}; {'id': '56', 'type': 'lambda_parameters', 'children': ['57']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'operation_id'}, {'id': '61', 'type': 'elif_clause', 'children': ['62', '72']}; {'id': '62', 'type': 'call', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '64', 'type': 'argument_list', 'children': ['65', '71']}, {'id': '65', 'type': 'subscript', 'children': ['66', '70']}; {'id': '66', 'type': 'call', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '68', 'type': 'argument_list', 'children': ['69']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'collection'}; {'id': '70', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '72', 'type': 'block', 'children': ['73']}, {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'assignment', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '76', 'type': 'lambda', 'children': ['77', '79']}, {'id': '77', 'type': 'lambda_parameters', 'children': ['78']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '79', 'type': 'attribute', 'children': ['80', '86']}; {'id': '80', 'type': 'call', 'children': ['81', '84']}, {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'SchemaObjects'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '84', 'type': 'argument_list', 'children': ['85']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '87', 'type': 'else_clause', 'children': ['88']}; {'id': '88', 'type': 'block', 'children': ['89']}, {'id': '89', 'type': 'raise_statement', 'children': ['90']}; {'id': '90', 'type': 'call', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'TypeError'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}, {'id': '93', 'type': 'call', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'subscript', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'collection'}; {'id': '98', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '99', 'type': 'return_statement', 'children': ['100']}; {'id': '100', 'type': 'call', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '102', 'type': 'argument_list', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'collection'}; {'id': '104', 'type': 'keyword_argument', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'key'} | def sorted(collection):
if len(collection) < 1:
return collection
if isinstance(collection, dict):
return sorted(collection.items(), key=lambda x: x[0])
if isinstance(list(collection)[0], Operation):
key = lambda x: x.operation_id
elif isinstance(list(collection)[0], str):
key = lambda x: SchemaObjects.get(x).name
else:
raise TypeError(type(collection[0]))
return sorted(collection, key=key) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_schemas'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'schema_types'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '10', 'type': 'True', 'children': []}, {'id': '11', 'type': 'block', 'children': ['12', '32', '50', '66']}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'filter'}, {'id': '17', 'type': 'argument_list', 'children': ['18', '25']}; {'id': '18', 'type': 'lambda', 'children': ['19', '21']}, {'id': '19', 'type': 'lambda_parameters', 'children': ['20']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '21', 'type': 'not_operator', 'children': ['22']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'is_inline_array'}, {'id': '25', 'type': 'call', 'children': ['26', '31']}; {'id': '26', 'type': 'attribute', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': '_schemas'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '31', 'type': 'argument_list', 'children': []}; {'id': '32', 'type': 'if_statement', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'schema_types'}; {'id': '34', 'type': 'block', 'children': ['35']}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '38', 'type': 'call', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '40', 'type': 'argument_list', 'children': ['41', '49']}, {'id': '41', 'type': 'lambda', 'children': ['42', '44']}; {'id': '42', 'type': 'lambda_parameters', 'children': ['43']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '44', 'type': 'comparison_operator', 'children': ['45', '48'], 'value': 'in'}, {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'schema_type'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'schema_types'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '50', 'type': 'if_statement', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '52', 'type': 'block', 'children': ['53']}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '56', 'type': 'call', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '58', 'type': 'argument_list', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '60', 'type': 'keyword_argument', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '62', 'type': 'call', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'attrgetter'}; {'id': '64', 'type': 'argument_list', 'children': ['65']}, {'id': '65', 'type': 'string', 'children': [], 'value': "'name'"}; {'id': '66', 'type': 'return_statement', 'children': ['67']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'result'} | def get_schemas(cls, schema_types=None, sort=True):
result = filter(lambda x: not x.is_inline_array, cls._schemas.values())
if schema_types:
result = filter(lambda x: x.schema_type in schema_types, result)
if sort:
result = sorted(result, key=attrgetter('name'))
return result |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '19']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'to_molden'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cartesian_list'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'buf'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'sort_index'}; {'id': '10', 'type': 'True', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'overwrite'}, {'id': '13', 'type': 'True', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'float_format'}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}, {'id': '17', 'type': 'string', 'children': [], 'value': "'{:.6f}'"}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '19', 'type': 'block', 'children': ['20', '35', '64', '73', '92', '103', '118', '136', '147']}; {'id': '20', 'type': 'if_statement', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'sort_index'}; {'id': '22', 'type': 'block', 'children': ['23']}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'cartesian_list'}; {'id': '26', 'type': 'list_comprehension', 'children': ['27', '32']}, {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'molecule'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'sort_index'}, {'id': '31', 'type': 'argument_list', 'children': []}; {'id': '32', 'type': 'for_in_clause', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'molecule'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'cartesian_list'}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'give_header'}; {'id': '38', 'type': 'attribute', 'children': ['39', '63']}, {'id': '39', 'type': 'parenthesized_expression', 'children': ['40'], 'value': '()'}; {'id': '40', 'type': 'binary_operator', 'children': ['41', '62'], 'value': '+'}, {'id': '41', 'type': 'binary_operator', 'children': ['42', '61'], 'value': '+'}; {'id': '42', 'type': 'binary_operator', 'children': ['43', '60'], 'value': '+'}, {'id': '43', 'type': 'binary_operator', 'children': ['44', '59'], 'value': '+'}; {'id': '44', 'type': 'binary_operator', 'children': ['45', '58'], 'value': '+'}, {'id': '45', 'type': 'binary_operator', 'children': ['46', '57'], 'value': '+'}; {'id': '46', 'type': 'binary_operator', 'children': ['47', '50'], 'value': '+'}, {'id': '47', 'type': 'binary_operator', 'children': ['48', '49'], 'value': '+'}; {'id': '48', 'type': 'string', 'children': [], 'value': '"[MOLDEN FORMAT]\\n"'}, {'id': '49', 'type': 'string', 'children': [], 'value': '"[N_GEO]\\n"'}; {'id': '50', 'type': 'call', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '52', 'type': 'argument_list', 'children': ['53']}, {'id': '53', 'type': 'call', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '55', 'type': 'argument_list', 'children': ['56']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'cartesian_list'}, {'id': '57', 'type': 'string', 'children': [], 'value': '"\\n"'}; {'id': '58', 'type': 'string', 'children': [], 'value': "'[GEOCONV]\\n'"}, {'id': '59', 'type': 'string', 'children': [], 'value': "'energy\\n{energy}'"}; {'id': '60', 'type': 'string', 'children': [], 'value': "'max-force\\n{max_force}'"}, {'id': '61', 'type': 'string', 'children': [], 'value': "'rms-force\\n{rms_force}'"}; {'id': '62', 'type': 'string', 'children': [], 'value': "'[GEOMETRIES] (XYZ)\\n'"}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'assignment', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '67', 'type': 'binary_operator', 'children': ['68', '72'], 'value': '*'}; {'id': '68', 'type': 'call', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '70', 'type': 'argument_list', 'children': ['71']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'cartesian_list'}; {'id': '72', 'type': 'string', 'children': [], 'value': "'1\\n'"}, {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'assignment', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'energy'}; {'id': '76', 'type': 'list_comprehension', 'children': ['77', '89']}, {'id': '77', 'type': 'call', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '79', 'type': 'argument_list', 'children': ['80']}; {'id': '80', 'type': 'call', 'children': ['81', '86']}, {'id': '81', 'type': 'attribute', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'm'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'metadata'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '86', 'type': 'argument_list', 'children': ['87', '88']}, {'id': '87', 'type': 'string', 'children': [], 'value': "'energy'"}; {'id': '88', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '89', 'type': 'for_in_clause', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'm'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'cartesian_list'}; {'id': '92', 'type': 'expression_statement', 'children': ['93']}, {'id': '93', 'type': 'assignment', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'energy'}, {'id': '95', 'type': 'binary_operator', 'children': ['96', '102'], 'value': '+'}; {'id': '96', 'type': 'call', 'children': ['97', '100']}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'string', 'children': [], 'value': "'\\n'"}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '100', 'type': 'argument_list', 'children': ['101']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'energy'}; {'id': '102', 'type': 'string', 'children': [], 'value': "'\\n'"}, {'id': '103', 'type': 'expression_statement', 'children': ['104']}; {'id': '104', 'type': 'assignment', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'header'}; {'id': '106', 'type': 'call', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'give_header'}; {'id': '108', 'type': 'argument_list', 'children': ['109', '112', '115']}, {'id': '109', 'type': 'keyword_argument', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'energy'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'energy'}; {'id': '112', 'type': 'keyword_argument', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'max_force'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '115', 'type': 'keyword_argument', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'rms_force'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '118', 'type': 'expression_statement', 'children': ['119']}, {'id': '119', 'type': 'assignment', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'coordinates'}, {'id': '121', 'type': 'list_comprehension', 'children': ['122', '133']}; {'id': '122', 'type': 'call', 'children': ['123', '126']}, {'id': '123', 'type': 'attribute', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'to_xyz'}; {'id': '126', 'type': 'argument_list', 'children': ['127', '130']}, {'id': '127', 'type': 'keyword_argument', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'sort_index'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'sort_index'}; {'id': '130', 'type': 'keyword_argument', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'float_format'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'float_format'}, {'id': '133', 'type': 'for_in_clause', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'cartesian_list'}; {'id': '136', 'type': 'expression_statement', 'children': ['137']}, {'id': '137', 'type': 'assignment', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'output'}, {'id': '139', 'type': 'binary_operator', 'children': ['140', '141'], 'value': '+'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'header'}, {'id': '141', 'type': 'call', 'children': ['142', '145']}; {'id': '142', 'type': 'attribute', 'children': ['143', '144']}, {'id': '143', 'type': 'string', 'children': [], 'value': "'\\n'"}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '145', 'type': 'argument_list', 'children': ['146']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'coordinates'}, {'id': '147', 'type': 'if_statement', 'children': ['148', '151', '199']}; {'id': '148', 'type': 'comparison_operator', 'children': ['149', '150'], 'value': 'is'}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'buf'}; {'id': '150', 'type': 'None', 'children': []}, {'id': '151', 'type': 'block', 'children': ['152']}; {'id': '152', 'type': 'if_statement', 'children': ['153', '154', '176']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'overwrite'}; {'id': '154', 'type': 'block', 'children': ['155']}, {'id': '155', 'type': 'with_statement', 'children': ['156', '168']}; {'id': '156', 'type': 'with_clause', 'children': ['157']}, {'id': '157', 'type': 'with_item', 'children': ['158']}; {'id': '158', 'type': 'as_pattern', 'children': ['159', '166']}, {'id': '159', 'type': 'call', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'open'}, {'id': '161', 'type': 'argument_list', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'buf'}, {'id': '163', 'type': 'keyword_argument', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'mode'}, {'id': '165', 'type': 'string', 'children': [], 'value': "'w'"}; {'id': '166', 'type': 'as_pattern_target', 'children': ['167']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '168', 'type': 'block', 'children': ['169']}, {'id': '169', 'type': 'expression_statement', 'children': ['170']}; {'id': '170', 'type': 'call', 'children': ['171', '174']}, {'id': '171', 'type': 'attribute', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '174', 'type': 'argument_list', 'children': ['175']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'output'}; {'id': '176', 'type': 'else_clause', 'children': ['177']}, {'id': '177', 'type': 'block', 'children': ['178']}; {'id': '178', 'type': 'with_statement', 'children': ['179', '191']}, {'id': '179', 'type': 'with_clause', 'children': ['180']}; {'id': '180', 'type': 'with_item', 'children': ['181']}, {'id': '181', 'type': 'as_pattern', 'children': ['182', '189']}; {'id': '182', 'type': 'call', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '184', 'type': 'argument_list', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'buf'}; {'id': '186', 'type': 'keyword_argument', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'mode'}; {'id': '188', 'type': 'string', 'children': [], 'value': "'x'"}, {'id': '189', 'type': 'as_pattern_target', 'children': ['190']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '191', 'type': 'block', 'children': ['192']}; {'id': '192', 'type': 'expression_statement', 'children': ['193']}, {'id': '193', 'type': 'call', 'children': ['194', '197']}; {'id': '194', 'type': 'attribute', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '197', 'type': 'argument_list', 'children': ['198']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'output'}, {'id': '199', 'type': 'else_clause', 'children': ['200']}; {'id': '200', 'type': 'block', 'children': ['201']}, {'id': '201', 'type': 'return_statement', 'children': ['202']} | def to_molden(cartesian_list, buf=None, sort_index=True,
overwrite=True, float_format='{:.6f}'.format):
if sort_index:
cartesian_list = [molecule.sort_index() for molecule in cartesian_list]
give_header = ("[MOLDEN FORMAT]\n"
+ "[N_GEO]\n"
+ str(len(cartesian_list)) + "\n"
+ '[GEOCONV]\n'
+ 'energy\n{energy}'
+ 'max-force\n{max_force}'
+ 'rms-force\n{rms_force}'
+ '[GEOMETRIES] (XYZ)\n').format
values = len(cartesian_list) * '1\n'
energy = [str(m.metadata.get('energy', 1)) for m in cartesian_list]
energy = '\n'.join(energy) + '\n'
header = give_header(energy=energy, max_force=values, rms_force=values)
coordinates = [x.to_xyz(sort_index=sort_index, float_format=float_format)
for x in cartesian_list]
output = header + '\n'.join(coordinates)
if buf is not None:
if overwrite:
with open(buf, mode='w') as f:
f.write(output)
else:
with open(buf, mode='x') as f:
f.write(output)
else:
return output |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_inertia'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '143', '152', '162', '172', '181', '190']}; {'id': '6', 'type': 'function_definition', 'children': ['7', '8', '10']}, {'id': '7', 'type': 'function_name', 'children': [], 'value': 'calculate_inertia_tensor'}; {'id': '8', 'type': 'parameters', 'children': ['9']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'molecule'}; {'id': '10', 'type': 'block', 'children': ['11', '23', '38', '102', '115', '124', '130', '138']}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'masses'}; {'id': '14', 'type': 'attribute', 'children': ['15', '22']}, {'id': '15', 'type': 'subscript', 'children': ['16', '19', '21']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'molecule'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'loc'}, {'id': '19', 'type': 'slice', 'children': ['20']}; {'id': '20', 'type': 'colon', 'children': []}, {'id': '21', 'type': 'string', 'children': [], 'value': "'mass'"}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'pos'}; {'id': '26', 'type': 'attribute', 'children': ['27', '37']}, {'id': '27', 'type': 'subscript', 'children': ['28', '31', '33']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'molecule'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'loc'}, {'id': '31', 'type': 'slice', 'children': ['32']}; {'id': '32', 'type': 'colon', 'children': []}, {'id': '33', 'type': 'list', 'children': ['34', '35', '36'], 'value': "['x', 'y', 'z']"}; {'id': '34', 'type': 'string', 'children': [], 'value': "'x'"}, {'id': '35', 'type': 'string', 'children': [], 'value': "'y'"}; {'id': '36', 'type': 'string', 'children': [], 'value': "'z'"}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'assignment', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'inertia'}, {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'sum'}, {'id': '45', 'type': 'argument_list', 'children': ['46', '99']}; {'id': '46', 'type': 'binary_operator', 'children': ['47', '53'], 'value': '*'}, {'id': '47', 'type': 'subscript', 'children': ['48', '49', '51', '52']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'masses'}, {'id': '49', 'type': 'slice', 'children': ['50']}; {'id': '50', 'type': 'colon', 'children': []}, {'id': '51', 'type': 'None', 'children': []}; {'id': '52', 'type': 'None', 'children': []}, {'id': '53', 'type': 'parenthesized_expression', 'children': ['54'], 'value': '()'}; {'id': '54', 'type': 'binary_operator', 'children': ['55', '84'], 'value': '-'}, {'id': '55', 'type': 'binary_operator', 'children': ['56', '72'], 'value': '*'}; {'id': '56', 'type': 'subscript', 'children': ['57', '68', '70', '71']}, {'id': '57', 'type': 'call', 'children': ['58', '64']}; {'id': '58', 'type': 'attribute', 'children': ['59', '63']}, {'id': '59', 'type': 'parenthesized_expression', 'children': ['60'], 'value': '()'}; {'id': '60', 'type': 'binary_operator', 'children': ['61', '62'], 'value': '**'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'pos'}; {'id': '62', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'sum'}; {'id': '64', 'type': 'argument_list', 'children': ['65']}, {'id': '65', 'type': 'keyword_argument', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'axis'}, {'id': '67', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '68', 'type': 'slice', 'children': ['69']}, {'id': '69', 'type': 'colon', 'children': []}; {'id': '70', 'type': 'None', 'children': []}, {'id': '71', 'type': 'None', 'children': []}; {'id': '72', 'type': 'subscript', 'children': ['73', '79', '80', '82']}, {'id': '73', 'type': 'call', 'children': ['74', '77']}; {'id': '74', 'type': 'attribute', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'identity'}, {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'integer', 'children': [], 'value': '3'}, {'id': '79', 'type': 'None', 'children': []}; {'id': '80', 'type': 'slice', 'children': ['81']}, {'id': '81', 'type': 'colon', 'children': []}; {'id': '82', 'type': 'slice', 'children': ['83']}, {'id': '83', 'type': 'colon', 'children': []}; {'id': '84', 'type': 'binary_operator', 'children': ['85', '92'], 'value': '*'}, {'id': '85', 'type': 'subscript', 'children': ['86', '87', '89', '91']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'pos'}, {'id': '87', 'type': 'slice', 'children': ['88']}; {'id': '88', 'type': 'colon', 'children': []}, {'id': '89', 'type': 'slice', 'children': ['90']}; {'id': '90', 'type': 'colon', 'children': []}, {'id': '91', 'type': 'None', 'children': []}; {'id': '92', 'type': 'subscript', 'children': ['93', '94', '96', '97']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'pos'}; {'id': '94', 'type': 'slice', 'children': ['95']}, {'id': '95', 'type': 'colon', 'children': []}; {'id': '96', 'type': 'None', 'children': []}, {'id': '97', 'type': 'slice', 'children': ['98']}; {'id': '98', 'type': 'colon', 'children': []}, {'id': '99', 'type': 'keyword_argument', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'axis'}, {'id': '101', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '102', 'type': 'expression_statement', 'children': ['103']}, {'id': '103', 'type': 'assignment', 'children': ['104', '107']}; {'id': '104', 'type': 'pattern_list', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'diag_inertia'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'eig_v'}, {'id': '107', 'type': 'call', 'children': ['108', '113']}; {'id': '108', 'type': 'attribute', 'children': ['109', '112']}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'linalg'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'eig'}, {'id': '113', 'type': 'argument_list', 'children': ['114']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'inertia'}, {'id': '115', 'type': 'expression_statement', 'children': ['116']}; {'id': '116', 'type': 'assignment', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'sorted_index'}; {'id': '118', 'type': 'call', 'children': ['119', '122']}, {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'argsort'}; {'id': '122', 'type': 'argument_list', 'children': ['123']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'diag_inertia'}; {'id': '124', 'type': 'expression_statement', 'children': ['125']}, {'id': '125', 'type': 'assignment', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'diag_inertia'}, {'id': '127', 'type': 'subscript', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'diag_inertia'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'sorted_index'}; {'id': '130', 'type': 'expression_statement', 'children': ['131']}, {'id': '131', 'type': 'assignment', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'eig_v'}, {'id': '133', 'type': 'subscript', 'children': ['134', '135', '137']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'eig_v'}, {'id': '135', 'type': 'slice', 'children': ['136']}; {'id': '136', 'type': 'colon', 'children': []}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'sorted_index'}; {'id': '138', 'type': 'return_statement', 'children': ['139']}, {'id': '139', 'type': 'expression_list', 'children': ['140', '141', '142']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'inertia'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'eig_v'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'diag_inertia'}, {'id': '143', 'type': 'expression_statement', 'children': ['144']}; {'id': '144', 'type': 'assignment', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'molecule'}; {'id': '146', 'type': 'call', 'children': ['147', '150']}, {'id': '147', 'type': 'attribute', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'add_data'}; {'id': '150', 'type': 'argument_list', 'children': ['151']}, {'id': '151', 'type': 'string', 'children': [], 'value': "'mass'"}; {'id': '152', 'type': 'expression_statement', 'children': ['153']}, {'id': '153', 'type': 'assignment', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'molecule'}, {'id': '155', 'type': 'binary_operator', 'children': ['156', '157'], 'value': '-'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'molecule'}, {'id': '157', 'type': 'call', 'children': ['158', '161']}; {'id': '158', 'type': 'attribute', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'molecule'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'get_barycenter'}, {'id': '161', 'type': 'argument_list', 'children': []}; {'id': '162', 'type': 'expression_statement', 'children': ['163']}, {'id': '163', 'type': 'assignment', 'children': ['164', '168']}; {'id': '164', 'type': 'pattern_list', 'children': ['165', '166', '167']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'inertia'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'eig_v'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'diag_inertia'}; {'id': '168', 'type': 'call', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'calculate_inertia_tensor'}; {'id': '170', 'type': 'argument_list', 'children': ['171']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'molecule'}; {'id': '172', 'type': 'expression_statement', 'children': ['173']}, {'id': '173', 'type': 'assignment', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'eig_v'}, {'id': '175', 'type': 'call', 'children': ['176', '179']}; {'id': '176', 'type': 'attribute', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'xyz_functions'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'orthonormalize_righthanded'}, {'id': '179', 'type': 'argument_list', 'children': ['180']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'eig_v'}, {'id': '181', 'type': 'expression_statement', 'children': ['182']}; {'id': '182', 'type': 'assignment', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'molecule'}; {'id': '184', 'type': 'call', 'children': ['185', '188']}, {'id': '185', 'type': 'attribute', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'molecule'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'basistransform'}; {'id': '188', 'type': 'argument_list', 'children': ['189']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'eig_v'}; {'id': '190', 'type': 'return_statement', 'children': ['191']}, {'id': '191', 'type': 'dictionary', 'children': ['192', '195', '198', '201']}; {'id': '192', 'type': 'pair', 'children': ['193', '194']}, {'id': '193', 'type': 'string', 'children': [], 'value': "'transformed_Cartesian'"}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'molecule'}, {'id': '195', 'type': 'pair', 'children': ['196', '197']}; {'id': '196', 'type': 'string', 'children': [], 'value': "'eigenvectors'"}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'eig_v'}; {'id': '198', 'type': 'pair', 'children': ['199', '200']}, {'id': '199', 'type': 'string', 'children': [], 'value': "'diag_inertia_tensor'"}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'diag_inertia'}, {'id': '201', 'type': 'pair', 'children': ['202', '203']}; {'id': '202', 'type': 'string', 'children': [], 'value': "'inertia_tensor'"}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'inertia'} | def get_inertia(self):
def calculate_inertia_tensor(molecule):
masses = molecule.loc[:, 'mass'].values
pos = molecule.loc[:, ['x', 'y', 'z']].values
inertia = np.sum(
masses[:, None, None]
* ((pos**2).sum(axis=1)[:, None, None]
* np.identity(3)[None, :, :]
- pos[:, :, None] * pos[:, None, :]),
axis=0)
diag_inertia, eig_v = np.linalg.eig(inertia)
sorted_index = np.argsort(diag_inertia)
diag_inertia = diag_inertia[sorted_index]
eig_v = eig_v[:, sorted_index]
return inertia, eig_v, diag_inertia
molecule = self.add_data('mass')
molecule = molecule - molecule.get_barycenter()
inertia, eig_v, diag_inertia = calculate_inertia_tensor(molecule)
eig_v = xyz_functions.orthonormalize_righthanded(eig_v)
molecule = molecule.basistransform(eig_v)
return {'transformed_Cartesian': molecule, 'eigenvectors': eig_v,
'diag_inertia_tensor': diag_inertia, 'inertia_tensor': inertia} |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '25']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'to_xyz'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '22']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'buf'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'sort_index'}; {'id': '10', 'type': 'True', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '13', 'type': 'False', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'header'}; {'id': '16', 'type': 'False', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'float_format'}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'string', 'children': [], 'value': "'{:.6f}'"}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '22', 'type': 'default_parameter', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'overwrite'}; {'id': '24', 'type': 'True', 'children': []}, {'id': '25', 'type': 'block', 'children': ['26', '69', '102', '125']}; {'id': '26', 'type': 'if_statement', 'children': ['27', '28', '50']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'sort_index'}; {'id': '28', 'type': 'block', 'children': ['29']}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'assignment', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'molecule_string'}; {'id': '32', 'type': 'call', 'children': ['33', '40']}, {'id': '33', 'type': 'attribute', 'children': ['34', '39']}; {'id': '34', 'type': 'call', 'children': ['35', '38']}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'sort_index'}; {'id': '38', 'type': 'argument_list', 'children': []}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'to_string'}; {'id': '40', 'type': 'argument_list', 'children': ['41', '44', '47']}, {'id': '41', 'type': 'keyword_argument', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'header'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'header'}; {'id': '44', 'type': 'keyword_argument', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '47', 'type': 'keyword_argument', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'float_format'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'float_format'}; {'id': '50', 'type': 'else_clause', 'children': ['51']}, {'id': '51', 'type': 'block', 'children': ['52']}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'assignment', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'molecule_string'}, {'id': '55', 'type': 'call', 'children': ['56', '59']}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'to_string'}, {'id': '59', 'type': 'argument_list', 'children': ['60', '63', '66']}; {'id': '60', 'type': 'keyword_argument', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'header'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'header'}, {'id': '63', 'type': 'keyword_argument', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '66', 'type': 'keyword_argument', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'float_format'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'float_format'}, {'id': '69', 'type': 'expression_statement', 'children': ['70']}; {'id': '70', 'type': 'assignment', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'space'}; {'id': '72', 'type': 'binary_operator', 'children': ['73', '74'], 'value': '*'}, {'id': '73', 'type': 'string', 'children': [], 'value': "' '"}; {'id': '74', 'type': 'parenthesized_expression', 'children': ['75'], 'value': '()'}, {'id': '75', 'type': 'binary_operator', 'children': ['76', '93'], 'value': '-'}; {'id': '76', 'type': 'call', 'children': ['77', '92']}, {'id': '77', 'type': 'attribute', 'children': ['78', '91']}; {'id': '78', 'type': 'call', 'children': ['79', '90']}, {'id': '79', 'type': 'attribute', 'children': ['80', '89']}; {'id': '80', 'type': 'attribute', 'children': ['81', '88']}, {'id': '81', 'type': 'subscript', 'children': ['82', '85', '87']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'loc'}, {'id': '85', 'type': 'slice', 'children': ['86']}; {'id': '86', 'type': 'colon', 'children': []}, {'id': '87', 'type': 'string', 'children': [], 'value': "'atom'"}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '90', 'type': 'argument_list', 'children': []}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'max'}; {'id': '92', 'type': 'argument_list', 'children': []}, {'id': '93', 'type': 'call', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'subscript', 'children': ['97', '100', '101']}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'iloc'}; {'id': '100', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '101', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '102', 'type': 'expression_statement', 'children': ['103']}, {'id': '103', 'type': 'assignment', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'output'}, {'id': '105', 'type': 'call', 'children': ['106', '109']}; {'id': '106', 'type': 'attribute', 'children': ['107', '108']}, {'id': '107', 'type': 'string', 'children': [], 'value': "'{n}\\n{message}\\n{alignment}{frame_string}'"}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '109', 'type': 'argument_list', 'children': ['110', '116', '119', '122']}; {'id': '110', 'type': 'keyword_argument', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '112', 'type': 'call', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '114', 'type': 'argument_list', 'children': ['115']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '116', 'type': 'keyword_argument', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'alignment'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'space'}, {'id': '119', 'type': 'keyword_argument', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'frame_string'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'molecule_string'}; {'id': '122', 'type': 'keyword_argument', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'message'}; {'id': '124', 'type': 'string', 'children': [], 'value': "'Created by chemcoord http://chemcoord.readthedocs.io/'"}, {'id': '125', 'type': 'if_statement', 'children': ['126', '129', '177']}; {'id': '126', 'type': 'comparison_operator', 'children': ['127', '128'], 'value': 'is'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'buf'}; {'id': '128', 'type': 'None', 'children': []}, {'id': '129', 'type': 'block', 'children': ['130']}; {'id': '130', 'type': 'if_statement', 'children': ['131', '132', '154']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'overwrite'}; {'id': '132', 'type': 'block', 'children': ['133']}, {'id': '133', 'type': 'with_statement', 'children': ['134', '146']}; {'id': '134', 'type': 'with_clause', 'children': ['135']}, {'id': '135', 'type': 'with_item', 'children': ['136']}; {'id': '136', 'type': 'as_pattern', 'children': ['137', '144']}, {'id': '137', 'type': 'call', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'open'}, {'id': '139', 'type': 'argument_list', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'buf'}, {'id': '141', 'type': 'keyword_argument', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'mode'}, {'id': '143', 'type': 'string', 'children': [], 'value': "'w'"}; {'id': '144', 'type': 'as_pattern_target', 'children': ['145']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '146', 'type': 'block', 'children': ['147']}, {'id': '147', 'type': 'expression_statement', 'children': ['148']}; {'id': '148', 'type': 'call', 'children': ['149', '152']}, {'id': '149', 'type': 'attribute', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '152', 'type': 'argument_list', 'children': ['153']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'output'}; {'id': '154', 'type': 'else_clause', 'children': ['155']}, {'id': '155', 'type': 'block', 'children': ['156']}; {'id': '156', 'type': 'with_statement', 'children': ['157', '169']}, {'id': '157', 'type': 'with_clause', 'children': ['158']}; {'id': '158', 'type': 'with_item', 'children': ['159']}, {'id': '159', 'type': 'as_pattern', 'children': ['160', '167']}; {'id': '160', 'type': 'call', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '162', 'type': 'argument_list', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'buf'}; {'id': '164', 'type': 'keyword_argument', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'mode'}; {'id': '166', 'type': 'string', 'children': [], 'value': "'x'"}, {'id': '167', 'type': 'as_pattern_target', 'children': ['168']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '169', 'type': 'block', 'children': ['170']}; {'id': '170', 'type': 'expression_statement', 'children': ['171']}, {'id': '171', 'type': 'call', 'children': ['172', '175']}; {'id': '172', 'type': 'attribute', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '175', 'type': 'argument_list', 'children': ['176']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'output'}, {'id': '177', 'type': 'else_clause', 'children': ['178']}; {'id': '178', 'type': 'block', 'children': ['179']}, {'id': '179', 'type': 'return_statement', 'children': ['180']} | def to_xyz(self, buf=None, sort_index=True,
index=False, header=False, float_format='{:.6f}'.format,
overwrite=True):
if sort_index:
molecule_string = self.sort_index().to_string(
header=header, index=index, float_format=float_format)
else:
molecule_string = self.to_string(header=header, index=index,
float_format=float_format)
space = ' ' * (self.loc[:, 'atom'].str.len().max()
- len(self.iloc[0, 0]))
output = '{n}\n{message}\n{alignment}{frame_string}'.format(
n=len(self), alignment=space, frame_string=molecule_string,
message='Created by chemcoord http://chemcoord.readthedocs.io/')
if buf is not None:
if overwrite:
with open(buf, mode='w') as f:
f.write(output)
else:
with open(buf, mode='x') as f:
f.write(output)
else:
return output |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'priority'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '23']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '16']}, {'id': '7', 'type': 'comparison_operator', 'children': ['8', '11'], 'value': '=='}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'compiled_type'}, {'id': '11', 'type': 'attribute', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'const'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'COMPILED_TYPE'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'MARKER'}; {'id': '16', 'type': 'block', 'children': ['17']}, {'id': '17', 'type': 'return_statement', 'children': ['18']}; {'id': '18', 'type': 'attribute', 'children': ['19', '22']}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'compiled'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'priority'}, {'id': '23', 'type': 'return_statement', 'children': ['24']}; {'id': '24', 'type': 'subscript', 'children': ['25', '28']}, {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'const'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'compiled_type_priorities'}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'} | def priority(self):
if self.compiled_type == const.COMPILED_TYPE.MARKER:
return self.compiled.priority
return const.compiled_type_priorities[self.compiled_type] |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_schemas'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'schemas_list'}; {'id': '6', 'type': 'block', 'children': ['7']}, {'id': '7', 'type': 'return_statement', 'children': ['8']}; {'id': '8', 'type': 'call', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '10', 'type': 'argument_list', 'children': ['11', '12', '39']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'schemas_list'}; {'id': '12', 'type': 'keyword_argument', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '14', 'type': 'lambda', 'children': ['15', '17']}, {'id': '15', 'type': 'lambda_parameters', 'children': ['16']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '17', 'type': 'tuple', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'priority'}, {'id': '21', 'type': 'conditional_expression', 'children': ['22', '29', '38'], 'value': 'if'}; {'id': '22', 'type': 'attribute', 'children': ['23', '28']}, {'id': '23', 'type': 'attribute', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'compiled'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'key_schema'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'priority'}, {'id': '29', 'type': 'comparison_operator', 'children': ['30', '33'], 'value': '=='}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'compiled_type'}, {'id': '33', 'type': 'attribute', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'const'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'COMPILED_TYPE'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'MARKER'}; {'id': '38', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '39', 'type': 'keyword_argument', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'reverse'}, {'id': '41', 'type': 'True', 'children': []} | def sort_schemas(cls, schemas_list):
return sorted(schemas_list,
key=lambda x: (
x.priority,
x.compiled.key_schema.priority if x.compiled_type == const.COMPILED_TYPE.MARKER else 0
), reverse=True) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '19']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'patch_cursor'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cursor'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'batch_size'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'limit'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'skip'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'dictionary_splat_pattern', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '19', 'type': 'block', 'children': ['20', '35', '47', '59']}; {'id': '20', 'type': 'if_statement', 'children': ['21', '27']}, {'id': '21', 'type': 'comparison_operator', 'children': ['22', '26'], 'value': '=='}; {'id': '22', 'type': 'call', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'batch_size'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '27', 'type': 'block', 'children': ['28']}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'call', 'children': ['30', '33']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'cursor'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'batch_size'}, {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'batch_size'}, {'id': '35', 'type': 'if_statement', 'children': ['36', '39']}; {'id': '36', 'type': 'comparison_operator', 'children': ['37', '38'], 'value': 'is'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'limit'}; {'id': '38', 'type': 'None', 'children': []}, {'id': '39', 'type': 'block', 'children': ['40']}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'cursor'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'limit'}, {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'limit'}, {'id': '47', 'type': 'if_statement', 'children': ['48', '51']}; {'id': '48', 'type': 'comparison_operator', 'children': ['49', '50'], 'value': 'is'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '50', 'type': 'None', 'children': []}, {'id': '51', 'type': 'block', 'children': ['52']}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'call', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'cursor'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '59', 'type': 'if_statement', 'children': ['60', '63']}; {'id': '60', 'type': 'comparison_operator', 'children': ['61', '62'], 'value': 'is'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'skip'}; {'id': '62', 'type': 'None', 'children': []}, {'id': '63', 'type': 'block', 'children': ['64']}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'cursor'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'skip'}, {'id': '69', 'type': 'argument_list', 'children': ['70']} | def patch_cursor(cursor, batch_size=None, limit=None, skip=None, sort=None, **kwargs):
if type(batch_size) == int:
cursor.batch_size(batch_size)
if limit is not None:
cursor.limit(limit)
if sort is not None:
cursor.sort(sort)
if skip is not None:
cursor.skip(skip) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'add_interval'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'end'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '9', 'type': 'None', 'children': []}; {'id': '10', 'type': 'block', 'children': ['11', '13', '22']}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'string', 'children': [], 'value': '\'\'\'\n Inserts an interval to the tree. \n Note that when inserting we do not maintain appropriate sorting of the "mid" data structure.\n This should be done after all intervals are inserted.\n \'\'\''}, {'id': '13', 'type': 'if_statement', 'children': ['14', '20']}; {'id': '14', 'type': 'comparison_operator', 'children': ['15', '19'], 'value': '<='}, {'id': '15', 'type': 'parenthesized_expression', 'children': ['16'], 'value': '()'}; {'id': '16', 'type': 'binary_operator', 'children': ['17', '18'], 'value': '-'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'end'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'start'}, {'id': '19', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '20', 'type': 'block', 'children': ['21']}, {'id': '21', 'type': 'return_statement', 'children': []}; {'id': '22', 'type': 'if_statement', 'children': ['23', '28', '38', '54']}, {'id': '23', 'type': 'comparison_operator', 'children': ['24', '27'], 'value': 'is'}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'single_interval'}, {'id': '27', 'type': 'None', 'children': []}; {'id': '28', 'type': 'block', 'children': ['29']}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'assignment', 'children': ['31', '34']}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'single_interval'}; {'id': '34', 'type': 'tuple', 'children': ['35', '36', '37']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'end'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '38', 'type': 'elif_clause', 'children': ['39', '44']}, {'id': '39', 'type': 'comparison_operator', 'children': ['40', '43'], 'value': '=='}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'single_interval'}, {'id': '43', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '44', 'type': 'block', 'children': ['45']}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'call', 'children': ['47', '50']}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': '_add_interval'}; {'id': '50', 'type': 'argument_list', 'children': ['51', '52', '53']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'end'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '54', 'type': 'else_clause', 'children': ['55']}, {'id': '55', 'type': 'block', 'children': ['56', '66', '72']}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}, {'id': '57', 'type': 'call', 'children': ['58', '61']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': '_add_interval'}, {'id': '61', 'type': 'argument_list', 'children': ['62']}; {'id': '62', 'type': 'list_splat', 'children': ['63']}, {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'single_interval'}; {'id': '66', 'type': 'expression_statement', 'children': ['67']}, {'id': '67', 'type': 'assignment', 'children': ['68', '71']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'single_interval'}, {'id': '71', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'call', 'children': ['74', '77']}; {'id': '74', 'type': 'attribute', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': '_add_interval'}, {'id': '77', 'type': 'argument_list', 'children': ['78', '79', '80']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'start'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'end'} | def add_interval(self, start, end, data=None):
'''
Inserts an interval to the tree.
Note that when inserting we do not maintain appropriate sorting of the "mid" data structure.
This should be done after all intervals are inserted.
'''
if (end - start) <= 0:
return
if self.single_interval is None:
self.single_interval = (start, end, data)
elif self.single_interval == 0:
self._add_interval(start, end, data)
else:
self._add_interval(*self.single_interval)
self.single_interval = 0
self._add_interval(start, end, data) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'parse'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'querydict'}; {'id': '6', 'type': 'block', 'children': ['7', '49', '129']}, {'id': '7', 'type': 'for_statement', 'children': ['8', '9', '14']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '9', 'type': 'call', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'querydict'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '13', 'type': 'argument_list', 'children': []}; {'id': '14', 'type': 'block', 'children': ['15']}, {'id': '15', 'type': 'if_statement', 'children': ['16', '34']}; {'id': '16', 'type': 'not_operator', 'children': ['17']}, {'id': '17', 'type': 'call', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'any'}, {'id': '19', 'type': 'argument_list', 'children': ['20']}; {'id': '20', 'type': 'tuple', 'children': ['21', '26']}, {'id': '21', 'type': 'comparison_operator', 'children': ['22', '23'], 'value': 'in'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'JSONAPIQueryDict'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': '_fields'}; {'id': '26', 'type': 'call', 'children': ['27', '32']}, {'id': '27', 'type': 'attribute', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'RE_FIELDS'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '34', 'type': 'block', 'children': ['35', '44']}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '38', 'type': 'call', 'children': ['39', '42']}, {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'string', 'children': [], 'value': '"Query parameter {} is not known"'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '42', 'type': 'argument_list', 'children': ['43']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '44', 'type': 'raise_statement', 'children': ['45']}, {'id': '45', 'type': 'call', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '47', 'type': 'argument_list', 'children': ['48']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'msg'}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '52', 'type': 'call', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'JSONAPIQueryDict'}; {'id': '54', 'type': 'argument_list', 'children': ['55', '68', '76', '84', '97', '116']}, {'id': '55', 'type': 'keyword_argument', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'distinct'}, {'id': '57', 'type': 'call', 'children': ['58', '61']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'prepare_values'}, {'id': '61', 'type': 'argument_list', 'children': ['62']}; {'id': '62', 'type': 'call', 'children': ['63', '66']}, {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'querydict'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'getlist'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}, {'id': '67', 'type': 'string', 'children': [], 'value': "'distinct'"}; {'id': '68', 'type': 'keyword_argument', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'fields'}; {'id': '70', 'type': 'call', 'children': ['71', '74']}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'parse_fields'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'querydict'}; {'id': '76', 'type': 'keyword_argument', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '78', 'type': 'call', 'children': ['79', '82']}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'querydict'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'getlist'}; {'id': '82', 'type': 'argument_list', 'children': ['83']}, {'id': '83', 'type': 'string', 'children': [], 'value': "'filter'"}; {'id': '84', 'type': 'keyword_argument', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'include'}; {'id': '86', 'type': 'call', 'children': ['87', '90']}, {'id': '87', 'type': 'attribute', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'prepare_values'}; {'id': '90', 'type': 'argument_list', 'children': ['91']}, {'id': '91', 'type': 'call', 'children': ['92', '95']}; {'id': '92', 'type': 'attribute', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'querydict'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'getlist'}, {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'string', 'children': [], 'value': "'include'"}, {'id': '97', 'type': 'keyword_argument', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'page'}, {'id': '99', 'type': 'conditional_expression', 'children': ['100', '109', '115'], 'value': 'if'}; {'id': '100', 'type': 'call', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '102', 'type': 'argument_list', 'children': ['103']}, {'id': '103', 'type': 'call', 'children': ['104', '107']}; {'id': '104', 'type': 'attribute', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'querydict'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '107', 'type': 'argument_list', 'children': ['108']}; {'id': '108', 'type': 'string', 'children': [], 'value': "'page'"}, {'id': '109', 'type': 'call', 'children': ['110', '113']}; {'id': '110', 'type': 'attribute', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'querydict'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '113', 'type': 'argument_list', 'children': ['114']}; {'id': '114', 'type': 'string', 'children': [], 'value': "'page'"}, {'id': '115', 'type': 'None', 'children': []}; {'id': '116', 'type': 'keyword_argument', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '118', 'type': 'call', 'children': ['119', '122']}, {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'prepare_values'}; {'id': '122', 'type': 'argument_list', 'children': ['123']}, {'id': '123', 'type': 'call', 'children': ['124', '127']}; {'id': '124', 'type': 'attribute', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'querydict'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'getlist'}, {'id': '127', 'type': 'argument_list', 'children': ['128']}; {'id': '128', 'type': 'string', 'children': [], 'value': "'sort'"}, {'id': '129', 'type': 'return_statement', 'children': ['130']} | def parse(cls, querydict):
for key in querydict.keys():
if not any((key in JSONAPIQueryDict._fields,
cls.RE_FIELDS.match(key))):
msg = "Query parameter {} is not known".format(key)
raise ValueError(msg)
result = JSONAPIQueryDict(
distinct=cls.prepare_values(querydict.getlist('distinct')),
fields=cls.parse_fields(querydict),
filter=querydict.getlist('filter'),
include=cls.prepare_values(querydict.getlist('include')),
page=int(querydict.get('page')) if querydict.get('page') else None,
sort=cls.prepare_values(querydict.getlist('sort'))
)
return result |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_pcca_connected_isa'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'evec'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'n_clusters'}; {'id': '6', 'type': 'block', 'children': ['7', '15', '46', '73', '82', '91', '105', '114', '118', '132', '172', '181', '290', '303', '313']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '12']}, {'id': '9', 'type': 'tuple_pattern', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'm'}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'evec'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'shape'}, {'id': '15', 'type': 'if_statement', 'children': ['16', '19']}; {'id': '16', 'type': 'comparison_operator', 'children': ['17', '18'], 'value': '>'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'n_clusters'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'm'}, {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'raise_statement', 'children': ['21']}, {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'binary_operator', 'children': ['25', '45'], 'value': '+'}, {'id': '25', 'type': 'binary_operator', 'children': ['26', '41'], 'value': '+'}; {'id': '26', 'type': 'binary_operator', 'children': ['27', '40'], 'value': '+'}, {'id': '27', 'type': 'binary_operator', 'children': ['28', '36'], 'value': '+'}; {'id': '28', 'type': 'binary_operator', 'children': ['29', '35'], 'value': '+'}, {'id': '29', 'type': 'binary_operator', 'children': ['30', '31'], 'value': '+'}; {'id': '30', 'type': 'string', 'children': [], 'value': '"Cannot cluster the ("'}, {'id': '31', 'type': 'call', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '35', 'type': 'string', 'children': [], 'value': '" x "'}; {'id': '36', 'type': 'call', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'm'}; {'id': '40', 'type': 'string', 'children': [], 'value': '" eigenvector matrix to "'}, {'id': '41', 'type': 'call', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '43', 'type': 'argument_list', 'children': ['44']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'n_clusters'}, {'id': '45', 'type': 'string', 'children': [], 'value': '" clusters."'}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'assignment', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'diffs'}, {'id': '49', 'type': 'call', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'abs'}, {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'binary_operator', 'children': ['55', '64'], 'value': '-'}, {'id': '55', 'type': 'call', 'children': ['56', '59']}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'max'}, {'id': '59', 'type': 'argument_list', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'evec'}, {'id': '61', 'type': 'keyword_argument', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'axis'}, {'id': '63', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '64', 'type': 'call', 'children': ['65', '68']}, {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'min'}; {'id': '68', 'type': 'argument_list', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'evec'}; {'id': '70', 'type': 'keyword_argument', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'axis'}; {'id': '72', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '73', 'type': 'assert_statement', 'children': ['74', '79']}; {'id': '74', 'type': 'comparison_operator', 'children': ['75', '78'], 'value': '<'}, {'id': '75', 'type': 'subscript', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'diffs'}, {'id': '77', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '78', 'type': 'float', 'children': [], 'value': '1e-6'}, {'id': '79', 'type': 'concatenated_string', 'children': ['80', '81']}; {'id': '80', 'type': 'string', 'children': [], 'value': '"First eigenvector is not constant. This indicates that the transition matrix "'}, {'id': '81', 'type': 'string', 'children': [], 'value': '"is not connected or the eigenvectors are incorrectly sorted. Cannot do PCCA."'}; {'id': '82', 'type': 'assert_statement', 'children': ['83', '88']}, {'id': '83', 'type': 'comparison_operator', 'children': ['84', '87'], 'value': '>'}; {'id': '84', 'type': 'subscript', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'diffs'}; {'id': '86', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '87', 'type': 'float', 'children': [], 'value': '1e-6'}; {'id': '88', 'type': 'concatenated_string', 'children': ['89', '90']}, {'id': '89', 'type': 'string', 'children': [], 'value': '"An eigenvector after the first one is constant. "'}; {'id': '90', 'type': 'string', 'children': [], 'value': '"Probably the eigenvectors are incorrectly sorted. Cannot do PCCA."'}, {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'assignment', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '94', 'type': 'subscript', 'children': ['95', '96', '98']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'evec'}; {'id': '96', 'type': 'slice', 'children': ['97']}, {'id': '97', 'type': 'colon', 'children': []}; {'id': '98', 'type': 'call', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '100', 'type': 'argument_list', 'children': ['101']}, {'id': '101', 'type': 'call', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '103', 'type': 'argument_list', 'children': ['104']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'n_clusters'}, {'id': '105', 'type': 'expression_statement', 'children': ['106']}; {'id': '106', 'type': 'assignment', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'ortho_sys'}; {'id': '108', 'type': 'call', 'children': ['109', '112']}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'copy'}; {'id': '112', 'type': 'argument_list', 'children': ['113']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '114', 'type': 'expression_statement', 'children': ['115']}, {'id': '115', 'type': 'assignment', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'max_dist'}, {'id': '117', 'type': 'float', 'children': [], 'value': '0.0'}; {'id': '118', 'type': 'expression_statement', 'children': ['119']}, {'id': '119', 'type': 'assignment', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'ind'}, {'id': '121', 'type': 'call', 'children': ['122', '125']}; {'id': '122', 'type': 'attribute', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'zeros'}, {'id': '125', 'type': 'argument_list', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'n_clusters'}, {'id': '127', 'type': 'keyword_argument', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'dtype'}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'int32'}; {'id': '132', 'type': 'for_statement', 'children': ['133', '136', '140']}, {'id': '133', 'type': 'tuple_pattern', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '136', 'type': 'call', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '138', 'type': 'argument_list', 'children': ['139']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '140', 'type': 'block', 'children': ['141']}, {'id': '141', 'type': 'if_statement', 'children': ['142', '153']}; {'id': '142', 'type': 'comparison_operator', 'children': ['143', '152'], 'value': '>'}, {'id': '143', 'type': 'call', 'children': ['144', '149']}; {'id': '144', 'type': 'attribute', 'children': ['145', '148']}, {'id': '145', 'type': 'attribute', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'linalg'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'norm'}, {'id': '149', 'type': 'argument_list', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'row'}, {'id': '151', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'max_dist'}, {'id': '153', 'type': 'block', 'children': ['154', '166']}; {'id': '154', 'type': 'expression_statement', 'children': ['155']}, {'id': '155', 'type': 'assignment', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'max_dist'}, {'id': '157', 'type': 'call', 'children': ['158', '163']}; {'id': '158', 'type': 'attribute', 'children': ['159', '162']}, {'id': '159', 'type': 'attribute', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'linalg'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'norm'}, {'id': '163', 'type': 'argument_list', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'row'}, {'id': '165', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '166', 'type': 'expression_statement', 'children': ['167']}, {'id': '167', 'type': 'assignment', 'children': ['168', '171']}; {'id': '168', 'type': 'subscript', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'ind'}; {'id': '170', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '172', 'type': 'expression_statement', 'children': ['173']}, {'id': '173', 'type': 'augmented_assignment', 'children': ['174', '175'], 'value': '-='}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'ortho_sys'}, {'id': '175', 'type': 'subscript', 'children': ['176', '177', '180']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '177', 'type': 'subscript', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'ind'}, {'id': '179', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '180', 'type': 'None', 'children': []}, {'id': '181', 'type': 'for_statement', 'children': ['182', '183', '188']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '183', 'type': 'call', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '185', 'type': 'argument_list', 'children': ['186', '187']}; {'id': '186', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'n_clusters'}; {'id': '188', 'type': 'block', 'children': ['189', '193', '208', '274']}, {'id': '189', 'type': 'expression_statement', 'children': ['190']}; {'id': '190', 'type': 'assignment', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'max_dist'}; {'id': '192', 'type': 'float', 'children': [], 'value': '0.0'}, {'id': '193', 'type': 'expression_statement', 'children': ['194']}; {'id': '194', 'type': 'assignment', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'temp'}; {'id': '196', 'type': 'call', 'children': ['197', '200']}, {'id': '197', 'type': 'attribute', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'copy'}; {'id': '200', 'type': 'argument_list', 'children': ['201']}, {'id': '201', 'type': 'subscript', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'ortho_sys'}, {'id': '203', 'type': 'subscript', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'ind'}, {'id': '205', 'type': 'binary_operator', 'children': ['206', '207'], 'value': '-'}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '207', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '208', 'type': 'for_statement', 'children': ['209', '212', '216']}, {'id': '209', 'type': 'tuple_pattern', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '212', 'type': 'call', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '214', 'type': 'argument_list', 'children': ['215']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'ortho_sys'}; {'id': '216', 'type': 'block', 'children': ['217', '238', '250']}, {'id': '217', 'type': 'expression_statement', 'children': ['218']}; {'id': '218', 'type': 'augmented_assignment', 'children': ['219', '220'], 'value': '-='}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '220', 'type': 'call', 'children': ['221', '224']}, {'id': '221', 'type': 'attribute', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'dot'}; {'id': '224', 'type': 'argument_list', 'children': ['225', '237']}, {'id': '225', 'type': 'call', 'children': ['226', '229']}; {'id': '226', 'type': 'attribute', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'dot'}, {'id': '229', 'type': 'argument_list', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'temp'}, {'id': '231', 'type': 'call', 'children': ['232', '235']}; {'id': '232', 'type': 'attribute', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'transpose'}, {'id': '235', 'type': 'argument_list', 'children': ['236']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'row'}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'temp'}; {'id': '238', 'type': 'expression_statement', 'children': ['239']}, {'id': '239', 'type': 'assignment', 'children': ['240', '241']}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'distt'}, {'id': '241', 'type': 'call', 'children': ['242', '247']}; {'id': '242', 'type': 'attribute', 'children': ['243', '246']}, {'id': '243', 'type': 'attribute', 'children': ['244', '245']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'linalg'}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'norm'}, {'id': '247', 'type': 'argument_list', 'children': ['248', '249']}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'row'}, {'id': '249', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '250', 'type': 'if_statement', 'children': ['251', '263']}, {'id': '251', 'type': 'boolean_operator', 'children': ['252', '255'], 'value': 'and'}; {'id': '252', 'type': 'comparison_operator', 'children': ['253', '254'], 'value': '>'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'distt'}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'max_dist'}, {'id': '255', 'type': 'comparison_operator', 'children': ['256', '257'], 'value': 'not'}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '257', 'type': 'subscript', 'children': ['258', '259']}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'ind'}, {'id': '259', 'type': 'slice', 'children': ['260', '261', '262']}; {'id': '260', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '261', 'type': 'colon', 'children': []}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '263', 'type': 'block', 'children': ['264', '268']}; {'id': '264', 'type': 'expression_statement', 'children': ['265']}, {'id': '265', 'type': 'assignment', 'children': ['266', '267']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'max_dist'}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'distt'}; {'id': '268', 'type': 'expression_statement', 'children': ['269']}, {'id': '269', 'type': 'assignment', 'children': ['270', '273']}; {'id': '270', 'type': 'subscript', 'children': ['271', '272']}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'ind'}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '274', 'type': 'expression_statement', 'children': ['275']}, {'id': '275', 'type': 'augmented_assignment', 'children': ['276', '277'], 'value': '/='}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'ortho_sys'}, {'id': '277', 'type': 'call', 'children': ['278', '283']}; {'id': '278', 'type': 'attribute', 'children': ['279', '282']}, {'id': '279', 'type': 'attribute', 'children': ['280', '281']}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'linalg'}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'norm'}, {'id': '283', 'type': 'argument_list', 'children': ['284', '289']}; {'id': '284', 'type': 'subscript', 'children': ['285', '286']}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'ortho_sys'}; {'id': '286', 'type': 'subscript', 'children': ['287', '288']}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'ind'}; {'id': '288', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '289', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '290', 'type': 'expression_statement', 'children': ['291']}, {'id': '291', 'type': 'assignment', 'children': ['292', '293']}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'rot_mat'}, {'id': '293', 'type': 'call', 'children': ['294', '299']}; {'id': '294', 'type': 'attribute', 'children': ['295', '298']}, {'id': '295', 'type': 'attribute', 'children': ['296', '297']}; {'id': '296', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '297', 'type': 'identifier', 'children': [], 'value': 'linalg'}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'inv'}, {'id': '299', 'type': 'argument_list', 'children': ['300']}; {'id': '300', 'type': 'subscript', 'children': ['301', '302']}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '302', 'type': 'identifier', 'children': [], 'value': 'ind'}, {'id': '303', 'type': 'expression_statement', 'children': ['304']}; {'id': '304', 'type': 'assignment', 'children': ['305', '306']}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'chi'}; {'id': '306', 'type': 'call', 'children': ['307', '310']}, {'id': '307', 'type': 'attribute', 'children': ['308', '309']}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'dot'}; {'id': '310', 'type': 'argument_list', 'children': ['311', '312']}, {'id': '311', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '312', 'type': 'identifier', 'children': [], 'value': 'rot_mat'}, {'id': '313', 'type': 'return_statement', 'children': ['314']}; {'id': '314', 'type': 'tuple', 'children': ['315', '316']}, {'id': '315', 'type': 'identifier', 'children': [], 'value': 'chi'} | def _pcca_connected_isa(evec, n_clusters):
(n, m) = evec.shape
if n_clusters > m:
raise ValueError("Cannot cluster the (" + str(n) + " x " + str(m)
+ " eigenvector matrix to " + str(n_clusters) + " clusters.")
diffs = np.abs(np.max(evec, axis=0) - np.min(evec, axis=0))
assert diffs[0] < 1e-6, "First eigenvector is not constant. This indicates that the transition matrix " \
"is not connected or the eigenvectors are incorrectly sorted. Cannot do PCCA."
assert diffs[1] > 1e-6, "An eigenvector after the first one is constant. " \
"Probably the eigenvectors are incorrectly sorted. Cannot do PCCA."
c = evec[:, list(range(n_clusters))]
ortho_sys = np.copy(c)
max_dist = 0.0
ind = np.zeros(n_clusters, dtype=np.int32)
for (i, row) in enumerate(c):
if np.linalg.norm(row, 2) > max_dist:
max_dist = np.linalg.norm(row, 2)
ind[0] = i
ortho_sys -= c[ind[0], None]
for k in range(1, n_clusters):
max_dist = 0.0
temp = np.copy(ortho_sys[ind[k - 1]])
for (i, row) in enumerate(ortho_sys):
row -= np.dot(np.dot(temp, np.transpose(row)), temp)
distt = np.linalg.norm(row, 2)
if distt > max_dist and i not in ind[0:k]:
max_dist = distt
ind[k] = i
ortho_sys /= np.linalg.norm(ortho_sys[ind[k]], 2)
rot_mat = np.linalg.inv(c[ind])
chi = np.dot(c, rot_mat)
return (chi, rot_mat) |
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{'id': '16', 'type': 'colon', 'children': []}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'n_clusters'}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'rot_crop_matrix'}, {'id': '21', 'type': 'subscript', 'children': ['22', '27', '29']}; {'id': '22', 'type': 'subscript', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'rot_matrix'}; {'id': '24', 'type': 'slice', 'children': ['25', '26']}, {'id': '25', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '26', 'type': 'colon', 'children': []}, {'id': '27', 'type': 'slice', 'children': ['28']}; {'id': '28', 'type': 'colon', 'children': []}, {'id': '29', 'type': 'slice', 'children': ['30', '31']}; {'id': '30', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '31', 'type': 'colon', 'children': []}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '37']}; {'id': '34', 'type': 'tuple_pattern', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'rot_crop_matrix'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'shape'}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'assignment', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'rot_crop_vec'}, {'id': '43', 'type': 'call', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'reshape'}, {'id': '47', 'type': 'argument_list', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'rot_crop_matrix'}, {'id': '49', 'type': 'binary_operator', 'children': ['50', '51'], 'value': '*'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '52', 'type': 'function_definition', 'children': ['53', '54', '57']}, {'id': '53', 'type': 'function_name', 'children': [], 'value': 'susanna_func'}; {'id': '54', 'type': 'parameters', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'rot_crop_vec'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'eigvectors'}, {'id': '57', 'type': 'block', 'children': ['58', '70', '78', '82', '116']}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'assignment', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'rot_crop_matrix'}, {'id': '61', 'type': 'call', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'reshape'}, {'id': '65', 'type': 'argument_list', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'rot_crop_vec'}, {'id': '67', 'type': 'tuple', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'assignment', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'rot_matrix'}, {'id': '73', 'type': 'call', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': '_fill_matrix'}, {'id': '75', 'type': 'argument_list', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'rot_crop_matrix'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'eigvectors'}; {'id': '78', 'type': 'expression_statement', 'children': ['79']}, {'id': '79', 'type': 'assignment', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '81', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '82', 'type': 'for_statement', 'children': ['83', '84', '89']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '84', 'type': 'call', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '86', 'type': 'argument_list', 'children': ['87', '88']}, {'id': '87', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'n_clusters'}, {'id': '89', 'type': 'block', 'children': ['90']}; {'id': '90', 'type': 'for_statement', 'children': ['91', '92', '97']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '92', 'type': 'call', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '94', 'type': 'argument_list', 'children': ['95', '96']}, {'id': '95', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'n_clusters'}, {'id': '97', 'type': 'block', 'children': ['98']}; {'id': '98', 'type': 'expression_statement', 'children': ['99']}, {'id': '99', 'type': 'augmented_assignment', 'children': ['100', '101'], 'value': '+='}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '101', 'type': 'binary_operator', 'children': ['102', '112'], 'value': '/'}; {'id': '102', 'type': 'call', 'children': ['103', '106']}, {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'power'}; {'id': '106', 'type': 'argument_list', 'children': ['107', '111']}, {'id': '107', 'type': 'subscript', 'children': ['108', '109', '110']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'rot_matrix'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '111', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '112', 'type': 'subscript', 'children': ['113', '114', '115']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'rot_matrix'}; {'id': '114', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '116', 'type': 'return_statement', 'children': ['117']}, {'id': '117', 'type': 'unary_operator', 'children': ['118'], 'value': '-'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '119', 'type': 'import_from_statement', 'children': ['120', '123']}; {'id': '120', 'type': 'dotted_name', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'scipy'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'optimize'}, {'id': '123', 'type': 'dotted_name', 'children': ['124']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'fmin'}, {'id': '125', 'type': 'expression_statement', 'children': ['126']}; {'id': '126', 'type': 'assignment', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'rot_crop_vec_opt'}; {'id': '128', 'type': 'call', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'fmin'}; {'id': '130', 'type': 'argument_list', 'children': ['131', '132', '133', '137']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'susanna_func'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'rot_crop_vec'}, {'id': '133', 'type': 'keyword_argument', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '135', 'type': 'tuple', 'children': ['136']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'eigvectors'}, {'id': '137', 'type': 'keyword_argument', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'disp'}, {'id': '139', 'type': 'False', 'children': []}; {'id': '140', 'type': 'expression_statement', 'children': ['141']}, {'id': '141', 'type': 'assignment', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'rot_crop_matrix'}, {'id': '143', 'type': 'call', 'children': ['144', '147']}; {'id': '144', 'type': 'attribute', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'reshape'}, {'id': '147', 'type': 'argument_list', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'rot_crop_vec_opt'}, {'id': '149', 'type': 'tuple', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '152', 'type': 'expression_statement', 'children': ['153']}, {'id': '153', 'type': 'assignment', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'rot_matrix'}, {'id': '155', 'type': 'call', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': '_fill_matrix'}, {'id': '157', 'type': 'argument_list', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'rot_crop_matrix'}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'eigvectors'}; {'id': '160', 'type': 'return_statement', 'children': ['161']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'rot_matrix'} | def _opt_soft(eigvectors, rot_matrix, n_clusters):
eigvectors = eigvectors[:, :n_clusters]
rot_crop_matrix = rot_matrix[1:][:, 1:]
(x, y) = rot_crop_matrix.shape
rot_crop_vec = np.reshape(rot_crop_matrix, x * y)
def susanna_func(rot_crop_vec, eigvectors):
rot_crop_matrix = np.reshape(rot_crop_vec, (x, y))
rot_matrix = _fill_matrix(rot_crop_matrix, eigvectors)
result = 0
for i in range(0, n_clusters):
for j in range(0, n_clusters):
result += np.power(rot_matrix[j, i], 2) / rot_matrix[0, i]
return -result
from scipy.optimize import fmin
rot_crop_vec_opt = fmin(susanna_func, rot_crop_vec, args=(eigvectors,), disp=False)
rot_crop_matrix = np.reshape(rot_crop_vec_opt, (x, y))
rot_matrix = _fill_matrix(rot_crop_matrix, eigvectors)
return rot_matrix |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'connected_sets'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'C'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'directed'}, {'id': '7', 'type': 'True', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '11']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'r'}, {'id': '11', 'type': 'if_statement', 'children': ['12', '16', '32']}; {'id': '12', 'type': 'call', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'isdense'}; {'id': '14', 'type': 'argument_list', 'children': ['15']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'C'}; {'id': '16', 'type': 'block', 'children': ['17']}, {'id': '17', 'type': 'return_statement', 'children': ['18']}; {'id': '18', 'type': 'call', 'children': ['19', '24']}, {'id': '19', 'type': 'attribute', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'sparse'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'connectivity'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'connected_sets'}; {'id': '24', 'type': 'argument_list', 'children': ['25', '29']}, {'id': '25', 'type': 'call', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'csr_matrix'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'C'}, {'id': '29', 'type': 'keyword_argument', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'directed'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'directed'}; {'id': '32', 'type': 'else_clause', 'children': ['33']}, {'id': '33', 'type': 'block', 'children': ['34']}; {'id': '34', 'type': 'return_statement', 'children': ['35']}, {'id': '35', 'type': 'call', 'children': ['36', '41']}; {'id': '36', 'type': 'attribute', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'sparse'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'connectivity'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'connected_sets'}, {'id': '41', 'type': 'argument_list', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'C'}, {'id': '43', 'type': 'keyword_argument', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'directed'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'directed'} | def connected_sets(C, directed=True):
r
if isdense(C):
return sparse.connectivity.connected_sets(csr_matrix(C), directed=directed)
else:
return sparse.connectivity.connected_sets(C, directed=directed) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'zcount'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'score_start'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'score_end'}; {'id': '8', 'type': 'block', 'children': ['9', '17', '25']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'score_start'}; {'id': '12', 'type': 'call', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'get_integer_or_emptystring'}; {'id': '14', 'type': 'argument_list', 'children': ['15', '16']}, {'id': '15', 'type': 'string', 'children': [], 'value': "'score_start'"}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'score_start'}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'score_end'}; {'id': '20', 'type': 'call', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'get_integer_or_emptystring'}; {'id': '22', 'type': 'argument_list', 'children': ['23', '24']}, {'id': '23', 'type': 'string', 'children': [], 'value': "'score_end'"}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'score_end'}, {'id': '25', 'type': 'return_statement', 'children': ['26']}; {'id': '26', 'type': 'call', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'execute_command'}; {'id': '30', 'type': 'argument_list', 'children': ['31', '32', '33', '34']}, {'id': '31', 'type': 'string', 'children': [], 'value': "'zcount'"}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'score_start'} | def zcount(self, name, score_start, score_end):
score_start = get_integer_or_emptystring('score_start', score_start)
score_end = get_integer_or_emptystring('score_end', score_end)
return self.execute_command('zcount', name, score_start, score_end) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'reload_index'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'progress_cb'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'dummy_progress_cb'}; {'id': '8', 'type': 'block', 'children': ['9', '19', '23', '45', '54']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'nb_results'}; {'id': '12', 'type': 'call', 'children': ['13', '18']}, {'id': '13', 'type': 'attribute', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'start_reload_index'}; {'id': '18', 'type': 'argument_list', 'children': []}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'progress'}; {'id': '22', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '23', 'type': 'while_statement', 'children': ['24', '31']}; {'id': '24', 'type': 'call', 'children': ['25', '30']}, {'id': '25', 'type': 'attribute', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'continue_reload_index'}; {'id': '30', 'type': 'argument_list', 'children': []}, {'id': '31', 'type': 'block', 'children': ['32', '41']}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'call', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'progress_cb'}, {'id': '35', 'type': 'argument_list', 'children': ['36', '37', '38']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'progress'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'nb_results'}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'INDEX_STEP_LOADING'}, {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'augmented_assignment', 'children': ['43', '44'], 'value': '+='}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'progress'}; {'id': '44', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'call', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'progress_cb'}; {'id': '48', 'type': 'argument_list', 'children': ['49', '50', '51']}, {'id': '49', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '50', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'INDEX_STEP_LOADING'}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}, {'id': '55', 'type': 'call', 'children': ['56', '61']}; {'id': '56', 'type': 'attribute', 'children': ['57', '60']}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'end_reload_index'}, {'id': '61', 'type': 'argument_list', 'children': []} | def reload_index(self, progress_cb=dummy_progress_cb):
nb_results = self.index.start_reload_index()
progress = 0
while self.index.continue_reload_index():
progress_cb(progress, nb_results, self.INDEX_STEP_LOADING)
progress += 1
progress_cb(1, 1, self.INDEX_STEP_LOADING)
self.index.end_reload_index() |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '__doc_cmp'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '6', 'type': 'block', 'children': ['7', '15', '26']}, {'id': '7', 'type': 'if_statement', 'children': ['8', '11']}; {'id': '8', 'type': 'comparison_operator', 'children': ['9', '10'], 'value': 'is'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'block', 'children': ['12']}; {'id': '12', 'type': 'return_statement', 'children': ['13']}, {'id': '13', 'type': 'unary_operator', 'children': ['14'], 'value': '-'}; {'id': '14', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '15', 'type': 'if_statement', 'children': ['16', '23']}; {'id': '16', 'type': 'boolean_operator', 'children': ['17', '20'], 'value': 'and'}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'is_new'}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'is_new'}, {'id': '23', 'type': 'block', 'children': ['24']}; {'id': '24', 'type': 'return_statement', 'children': ['25']}, {'id': '25', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '26', 'type': 'if_statement', 'children': ['27', '34', '38', '49']}, {'id': '27', 'type': 'comparison_operator', 'children': ['28', '31'], 'value': '<'}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': '__docid'}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'other'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': '__docid'}; {'id': '34', 'type': 'block', 'children': ['35']}, {'id': '35', 'type': 'return_statement', 'children': ['36']}; {'id': '36', 'type': 'unary_operator', 'children': ['37'], 'value': '-'}, {'id': '37', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '38', 'type': 'elif_clause', 'children': ['39', '46']}, {'id': '39', 'type': 'comparison_operator', 'children': ['40', '43'], 'value': '=='}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': '__docid'}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'other'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': '__docid'}; {'id': '46', 'type': 'block', 'children': ['47']}, {'id': '47', 'type': 'return_statement', 'children': ['48']}; {'id': '48', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '49', 'type': 'else_clause', 'children': ['50']}; {'id': '50', 'type': 'block', 'children': ['51']}, {'id': '51', 'type': 'return_statement', 'children': ['52']} | def __doc_cmp(self, other):
if other is None:
return -1
if self.is_new and other.is_new:
return 0
if self.__docid < other.__docid:
return -1
elif self.__docid == other.__docid:
return 0
else:
return 1 |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '__label_cmp'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '6', 'type': 'block', 'children': ['7', '15', '28', '41', '60']}, {'id': '7', 'type': 'if_statement', 'children': ['8', '11']}; {'id': '8', 'type': 'comparison_operator', 'children': ['9', '10'], 'value': 'is'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'block', 'children': ['12']}; {'id': '12', 'type': 'return_statement', 'children': ['13']}, {'id': '13', 'type': 'unary_operator', 'children': ['14'], 'value': '-'}; {'id': '14', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'label_name'}; {'id': '18', 'type': 'call', 'children': ['19', '27']}, {'id': '19', 'type': 'attribute', 'children': ['20', '26']}; {'id': '20', 'type': 'call', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'strip_accents'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'lower'}, {'id': '27', 'type': 'argument_list', 'children': []}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'assignment', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'other_name'}, {'id': '31', 'type': 'call', 'children': ['32', '40']}; {'id': '32', 'type': 'attribute', 'children': ['33', '39']}, {'id': '33', 'type': 'call', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'strip_accents'}, {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'lower'}; {'id': '40', 'type': 'argument_list', 'children': []}, {'id': '41', 'type': 'if_statement', 'children': ['42', '45', '49', '56']}; {'id': '42', 'type': 'comparison_operator', 'children': ['43', '44'], 'value': '<'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'label_name'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'other_name'}, {'id': '45', 'type': 'block', 'children': ['46']}; {'id': '46', 'type': 'return_statement', 'children': ['47']}, {'id': '47', 'type': 'unary_operator', 'children': ['48'], 'value': '-'}; {'id': '48', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '49', 'type': 'elif_clause', 'children': ['50', '53']}; {'id': '50', 'type': 'comparison_operator', 'children': ['51', '52'], 'value': '=='}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'label_name'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'other_name'}, {'id': '53', 'type': 'block', 'children': ['54']}; {'id': '54', 'type': 'return_statement', 'children': ['55']}, {'id': '55', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '56', 'type': 'else_clause', 'children': ['57']}, {'id': '57', 'type': 'block', 'children': ['58']}; {'id': '58', 'type': 'return_statement', 'children': ['59']}, {'id': '59', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '60', 'type': 'if_statement', 'children': ['61', '72', '76', '91']}, {'id': '61', 'type': 'comparison_operator', 'children': ['62', '67'], 'value': '<'}; {'id': '62', 'type': 'call', 'children': ['63', '66']}, {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'get_color_str'}; {'id': '66', 'type': 'argument_list', 'children': []}, {'id': '67', 'type': 'call', 'children': ['68', '71']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'get_color_str'}, {'id': '71', 'type': 'argument_list', 'children': []}; {'id': '72', 'type': 'block', 'children': ['73']}, {'id': '73', 'type': 'return_statement', 'children': ['74']}; {'id': '74', 'type': 'unary_operator', 'children': ['75'], 'value': '-'}, {'id': '75', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '76', 'type': 'elif_clause', 'children': ['77', '88']}, {'id': '77', 'type': 'comparison_operator', 'children': ['78', '83'], 'value': '=='}; {'id': '78', 'type': 'call', 'children': ['79', '82']}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'get_color_str'}; {'id': '82', 'type': 'argument_list', 'children': []}, {'id': '83', 'type': 'call', 'children': ['84', '87']}; {'id': '84', 'type': 'attribute', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'get_color_str'}, {'id': '87', 'type': 'argument_list', 'children': []}; {'id': '88', 'type': 'block', 'children': ['89']}, {'id': '89', 'type': 'return_statement', 'children': ['90']}; {'id': '90', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '91', 'type': 'else_clause', 'children': ['92']}; {'id': '92', 'type': 'block', 'children': ['93']}, {'id': '93', 'type': 'return_statement', 'children': ['94']} | def __label_cmp(self, other):
if other is None:
return -1
label_name = strip_accents(self.name).lower()
other_name = strip_accents(other.name).lower()
if label_name < other_name:
return -1
elif label_name == other_name:
return 0
else:
return 1
if self.get_color_str() < other.get_color_str():
return -1
elif self.get_color_str() == other.get_color_str():
return 0
else:
return 1 |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'stop_sequence'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6']}; {'id': '6', 'type': 'return_statement', 'children': ['7']}, {'id': '7', 'type': 'call', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '9', 'type': 'argument_list', 'children': ['10', '15']}; {'id': '10', 'type': 'call', 'children': ['11', '14']}, {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'stop_times'}; {'id': '14', 'type': 'argument_list', 'children': []}, {'id': '15', 'type': 'keyword_argument', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '17', 'type': 'lambda', 'children': ['18', '20']}; {'id': '18', 'type': 'lambda_parameters', 'children': ['19']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '20', 'type': 'call', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}, {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '27', 'type': 'argument_list', 'children': ['28']} | def stop_sequence(self):
return sorted(
self.stop_times(),
key=lambda x:int(x.get('stop_sequence'))
) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '18']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'near'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9', '12', '15']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'collection'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'latitude'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'longitude'}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'index_id'}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'distance'}, {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'skip'}; {'id': '14', 'type': 'None', 'children': []}, {'id': '15', 'type': 'default_parameter', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'limit'}, {'id': '17', 'type': 'None', 'children': []}; {'id': '18', 'type': 'block', 'children': ['19', '41']}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '22', 'type': 'dictionary', 'children': ['23', '26', '29', '32', '35', '38']}, {'id': '23', 'type': 'pair', 'children': ['24', '25']}; {'id': '24', 'type': 'string', 'children': [], 'value': "'geo'"}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'index_id'}; {'id': '26', 'type': 'pair', 'children': ['27', '28']}, {'id': '27', 'type': 'string', 'children': [], 'value': "'latitude'"}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'latitude'}, {'id': '29', 'type': 'pair', 'children': ['30', '31']}; {'id': '30', 'type': 'string', 'children': [], 'value': "'longitude'"}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'longitude'}; {'id': '32', 'type': 'pair', 'children': ['33', '34']}, {'id': '33', 'type': 'string', 'children': [], 'value': "'distance'"}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'distance'}, {'id': '35', 'type': 'pair', 'children': ['36', '37']}; {'id': '36', 'type': 'string', 'children': [], 'value': "'skip'"}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'skip'}; {'id': '38', 'type': 'pair', 'children': ['39', '40']}, {'id': '39', 'type': 'string', 'children': [], 'value': "'limit'"}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'limit'}, {'id': '41', 'type': 'return_statement', 'children': ['42']}; {'id': '42', 'type': 'call', 'children': ['43', '46']}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': '_construct_query'}; {'id': '46', 'type': 'argument_list', 'children': ['47', '50', '53', '56']}, {'id': '47', 'type': 'keyword_argument', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '49', 'type': 'string', 'children': [], 'value': "'near'"}; {'id': '50', 'type': 'keyword_argument', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'collection'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'collection'}, {'id': '53', 'type': 'keyword_argument', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'multiple'}, {'id': '55', 'type': 'True', 'children': []}; {'id': '56', 'type': 'dictionary_splat', 'children': ['57']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'kwargs'} | def near(cls, collection, latitude, longitude, index_id, distance=None, skip=None, limit=None):
kwargs = {
'geo': index_id,
'latitude': latitude,
'longitude': longitude,
'distance': distance,
'skip': skip,
'limit': limit,
}
return cls._construct_query(name='near',
collection=collection, multiple=True,
**kwargs) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'rank_targets'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'sample_frame'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'ref_targets'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'ref_sample'}, {'id': '7', 'type': 'block', 'children': ['8', '17', '27', '42', '49', '56', '60', '64', '185', '194', '200', '206', '215']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'table'}, {'id': '11', 'type': 'call', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'collect_expression'}, {'id': '13', 'type': 'argument_list', 'children': ['14', '15', '16']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'sample_frame'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'ref_targets'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'ref_sample'}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'all_samples'}; {'id': '20', 'type': 'call', 'children': ['21', '26']}, {'id': '21', 'type': 'attribute', 'children': ['22', '25']}; {'id': '22', 'type': 'subscript', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'sample_frame'}; {'id': '24', 'type': 'string', 'children': [], 'value': "'Sample'"}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'unique'}; {'id': '26', 'type': 'argument_list', 'children': []}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 't'}; {'id': '30', 'type': 'call', 'children': ['31', '41']}, {'id': '31', 'type': 'attribute', 'children': ['32', '40']}; {'id': '32', 'type': 'call', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'table'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'groupby'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}, {'id': '37', 'type': 'list', 'children': ['38', '39'], 'value': "['Sample', 'Target']"}; {'id': '38', 'type': 'string', 'children': [], 'value': "'Sample'"}, {'id': '39', 'type': 'string', 'children': [], 'value': "'Target'"}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'mean'}, {'id': '41', 'type': 'argument_list', 'children': []}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'logt'}, {'id': '45', 'type': 'call', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'log2'}, {'id': '47', 'type': 'argument_list', 'children': ['48']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 't'}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'ref_targets'}; {'id': '52', 'type': 'call', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '54', 'type': 'argument_list', 'children': ['55']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'ref_targets'}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}, {'id': '57', 'type': 'assignment', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'worst'}, {'id': '59', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'assignment', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'worst_m'}, {'id': '63', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '64', 'type': 'while_statement', 'children': ['65', '76']}, {'id': '65', 'type': 'comparison_operator', 'children': ['66', '75'], 'value': '>'}; {'id': '66', 'type': 'binary_operator', 'children': ['67', '71'], 'value': '-'}, {'id': '67', 'type': 'call', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '69', 'type': 'argument_list', 'children': ['70']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'ref_targets'}, {'id': '71', 'type': 'call', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '73', 'type': 'argument_list', 'children': ['74']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'worst'}, {'id': '75', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '76', 'type': 'block', 'children': ['77', '81', '161', '173']}, {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'assignment', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'M'}; {'id': '80', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '81', 'type': 'for_statement', 'children': ['82', '83', '84']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'test_target'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'ref_targets'}; {'id': '84', 'type': 'block', 'children': ['85', '91', '95', '136']}, {'id': '85', 'type': 'if_statement', 'children': ['86', '89']}; {'id': '86', 'type': 'comparison_operator', 'children': ['87', '88'], 'value': 'in'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'test_target'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'worst'}, {'id': '89', 'type': 'block', 'children': ['90']}; {'id': '90', 'type': 'continue_statement', 'children': []}, {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'assignment', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'Vs'}; {'id': '94', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '95', 'type': 'for_statement', 'children': ['96', '97', '98']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'ref_target'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'ref_targets'}; {'id': '98', 'type': 'block', 'children': ['99', '109', '125']}, {'id': '99', 'type': 'if_statement', 'children': ['100', '107']}; {'id': '100', 'type': 'boolean_operator', 'children': ['101', '104'], 'value': 'or'}, {'id': '101', 'type': 'comparison_operator', 'children': ['102', '103'], 'value': '=='}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'ref_target'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'test_target'}; {'id': '104', 'type': 'comparison_operator', 'children': ['105', '106'], 'value': 'in'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'ref_target'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'worst'}, {'id': '107', 'type': 'block', 'children': ['108']}; {'id': '108', 'type': 'continue_statement', 'children': []}, {'id': '109', 'type': 'expression_statement', 'children': ['110']}; {'id': '110', 'type': 'assignment', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'A'}; {'id': '112', 'type': 'subscript', 'children': ['113', '116', '124']}, {'id': '113', 'type': 'attribute', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'logt'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'ix'}; {'id': '116', 'type': 'call', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'zip'}; {'id': '118', 'type': 'argument_list', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'all_samples'}; {'id': '120', 'type': 'call', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'repeat'}; {'id': '122', 'type': 'argument_list', 'children': ['123']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'test_target'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'ref_target'}, {'id': '125', 'type': 'expression_statement', 'children': ['126']}; {'id': '126', 'type': 'call', 'children': ['127', '130']}, {'id': '127', 'type': 'attribute', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'Vs'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '130', 'type': 'argument_list', 'children': ['131']}, {'id': '131', 'type': 'call', 'children': ['132', '135']}; {'id': '132', 'type': 'attribute', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'A'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'std'}, {'id': '135', 'type': 'argument_list', 'children': []}; {'id': '136', 'type': 'expression_statement', 'children': ['137']}, {'id': '137', 'type': 'call', 'children': ['138', '141']}; {'id': '138', 'type': 'attribute', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'M'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '141', 'type': 'argument_list', 'children': ['142']}; {'id': '142', 'type': 'tuple', 'children': ['143', '160']}, {'id': '143', 'type': 'binary_operator', 'children': ['144', '148'], 'value': '/'}; {'id': '144', 'type': 'call', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'sum'}; {'id': '146', 'type': 'argument_list', 'children': ['147']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'Vs'}; {'id': '148', 'type': 'parenthesized_expression', 'children': ['149'], 'value': '()'}, {'id': '149', 'type': 'binary_operator', 'children': ['150', '159'], 'value': '-'}; {'id': '150', 'type': 'binary_operator', 'children': ['151', '155'], 'value': '-'}, {'id': '151', 'type': 'call', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '153', 'type': 'argument_list', 'children': ['154']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'ref_targets'}, {'id': '155', 'type': 'call', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '157', 'type': 'argument_list', 'children': ['158']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'worst'}, {'id': '159', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'test_target'}, {'id': '161', 'type': 'expression_statement', 'children': ['162']}; {'id': '162', 'type': 'call', 'children': ['163', '166']}, {'id': '163', 'type': 'attribute', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'worst'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '166', 'type': 'argument_list', 'children': ['167']}, {'id': '167', 'type': 'subscript', 'children': ['168', '172']}; {'id': '168', 'type': 'call', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'max'}; {'id': '170', 'type': 'argument_list', 'children': ['171']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'M'}; {'id': '172', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '173', 'type': 'expression_statement', 'children': ['174']}; {'id': '174', 'type': 'call', 'children': ['175', '178']}, {'id': '175', 'type': 'attribute', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'worst_m'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '178', 'type': 'argument_list', 'children': ['179']}, {'id': '179', 'type': 'subscript', 'children': ['180', '184']}; {'id': '180', 'type': 'call', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'max'}; {'id': '182', 'type': 'argument_list', 'children': ['183']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'M'}; {'id': '184', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '185', 'type': 'expression_statement', 'children': ['186']}; {'id': '186', 'type': 'assignment', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'best'}; {'id': '188', 'type': 'binary_operator', 'children': ['189', '190'], 'value': '-'}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'ref_targets'}; {'id': '190', 'type': 'call', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '192', 'type': 'argument_list', 'children': ['193']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'worst'}; {'id': '194', 'type': 'expression_statement', 'children': ['195']}, {'id': '195', 'type': 'call', 'children': ['196', '199']}; {'id': '196', 'type': 'attribute', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'worst'}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'reverse'}, {'id': '199', 'type': 'argument_list', 'children': []}; {'id': '200', 'type': 'expression_statement', 'children': ['201']}, {'id': '201', 'type': 'call', 'children': ['202', '205']}; {'id': '202', 'type': 'attribute', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'worst_m'}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'reverse'}, {'id': '205', 'type': 'argument_list', 'children': []}; {'id': '206', 'type': 'expression_statement', 'children': ['207']}, {'id': '207', 'type': 'assignment', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'worst_m'}, {'id': '209', 'type': 'binary_operator', 'children': ['210', '214'], 'value': '+'}; {'id': '210', 'type': 'list', 'children': ['211'], 'value': '[worst_m[0]]'}, {'id': '211', 'type': 'subscript', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'worst_m'}, {'id': '213', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'worst_m'}, {'id': '215', 'type': 'return_statement', 'children': ['216']}; {'id': '216', 'type': 'call', 'children': ['217', '220']}, {'id': '217', 'type': 'attribute', 'children': ['218', '219']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'pd'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'DataFrame'}; {'id': '220', 'type': 'argument_list', 'children': ['221', '233']}, {'id': '221', 'type': 'dictionary', 'children': ['222', '230']}; {'id': '222', 'type': 'pair', 'children': ['223', '224']}, {'id': '223', 'type': 'string', 'children': [], 'value': "'Target'"}; {'id': '224', 'type': 'binary_operator', 'children': ['225', '229'], 'value': '+'}, {'id': '225', 'type': 'call', 'children': ['226', '227']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '227', 'type': 'argument_list', 'children': ['228']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'best'}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'worst'}; {'id': '230', 'type': 'pair', 'children': ['231', '232']}, {'id': '231', 'type': 'string', 'children': [], 'value': "'M'"}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'worst_m'}, {'id': '233', 'type': 'keyword_argument', 'children': ['234', '235']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'columns'}, {'id': '235', 'type': 'list', 'children': ['236', '237'], 'value': "['Target', 'M']"}; {'id': '236', 'type': 'string', 'children': [], 'value': "'Target'"}, {'id': '237', 'type': 'string', 'children': [], 'value': "'M'"} | def rank_targets(sample_frame, ref_targets, ref_sample):
table = collect_expression(sample_frame, ref_targets, ref_sample)
all_samples = sample_frame['Sample'].unique()
t = table.groupby(['Sample', 'Target']).mean()
logt = log2(t)
ref_targets = set(ref_targets)
worst = []
worst_m = []
while len(ref_targets) - len(worst) > 1:
M = []
for test_target in ref_targets:
if test_target in worst: continue
Vs = []
for ref_target in ref_targets:
if ref_target == test_target or ref_target in worst: continue
A = logt.ix[zip(all_samples, repeat(test_target)), ref_target]
Vs.append(A.std())
M.append( (sum(Vs)/(len(ref_targets)-len(worst)-1), test_target) )
worst.append(max(M)[1])
worst_m.append(max(M)[0])
best = ref_targets - set(worst)
worst.reverse()
worst_m.reverse()
worst_m = [worst_m[0]] + worst_m
return pd.DataFrame({'Target': list(best) + worst, 'M': worst_m}, columns=['Target', 'M']) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'natural_sort_key'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '5', 'type': 'block', 'children': ['6']}; {'id': '6', 'type': 'return_statement', 'children': ['7']}, {'id': '7', 'type': 'list_comprehension', 'children': ['8', '19']}; {'id': '8', 'type': 'conditional_expression', 'children': ['9', '13', '18'], 'value': 'if'}, {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '11', 'type': 'argument_list', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'text'}, {'id': '13', 'type': 'call', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'text'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'isdigit'}, {'id': '17', 'type': 'argument_list', 'children': []}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'text'}, {'id': '19', 'type': 'for_in_clause', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'text'}, {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '25', 'type': 'argument_list', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'INTEGER_RE'}, {'id': '27', 'type': 'call', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '29', 'type': 'argument_list', 'children': ['30']} | def natural_sort_key(s):
return [int(text) if text.isdigit() else text
for text in re.split(INTEGER_RE, str(s))] |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'relabel_nodes'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'G'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'mapping'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'copy'}; {'id': '8', 'type': 'True', 'children': []}, {'id': '9', 'type': 'block', 'children': ['10', '39']}; {'id': '10', 'type': 'if_statement', 'children': ['11', '17', '33']}, {'id': '11', 'type': 'not_operator', 'children': ['12']}; {'id': '12', 'type': 'call', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'hasattr'}; {'id': '14', 'type': 'argument_list', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'mapping'}; {'id': '16', 'type': 'string', 'children': [], 'value': '"__getitem__"'}, {'id': '17', 'type': 'block', 'children': ['18']}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'm'}, {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'dict'}, {'id': '23', 'type': 'generator_expression', 'children': ['24', '30']}; {'id': '24', 'type': 'tuple', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '26', 'type': 'call', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'mapping'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '30', 'type': 'for_in_clause', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'G'}, {'id': '33', 'type': 'else_clause', 'children': ['34']}; {'id': '34', 'type': 'block', 'children': ['35']}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'm'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'mapping'}, {'id': '39', 'type': 'if_statement', 'children': ['40', '41', '48']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'copy'}, {'id': '41', 'type': 'block', 'children': ['42']}; {'id': '42', 'type': 'return_statement', 'children': ['43']}, {'id': '43', 'type': 'call', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': '_relabel_copy'}, {'id': '45', 'type': 'argument_list', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'G'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'm'}; {'id': '48', 'type': 'else_clause', 'children': ['49']}, {'id': '49', 'type': 'block', 'children': ['50']}; {'id': '50', 'type': 'return_statement', 'children': ['51']}, {'id': '51', 'type': 'call', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': '_relabel_inplace'}, {'id': '53', 'type': 'argument_list', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'G'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'm'} | def relabel_nodes(G, mapping, copy=True):
if not hasattr(mapping, "__getitem__"):
m = dict((n, mapping(n)) for n in G)
else:
m = mapping
if copy:
return _relabel_copy(G, m)
else:
return _relabel_inplace(G, m) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'convert_node_labels_to_integers'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'G'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'first_label'}, {'id': '7', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'ordering'}; {'id': '10', 'type': 'string', 'children': [], 'value': '"default"'}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'label_attribute'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'block', 'children': ['15', '25', '199', '207', '219', '247']}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'N'}; {'id': '18', 'type': 'binary_operator', 'children': ['19', '24'], 'value': '+'}, {'id': '19', 'type': 'call', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'G'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'number_of_nodes'}, {'id': '23', 'type': 'argument_list', 'children': []}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'first_label'}, {'id': '25', 'type': 'if_statement', 'children': ['26', '29', '49', '83', '131', '185']}; {'id': '26', 'type': 'comparison_operator', 'children': ['27', '28'], 'value': '=='}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'ordering'}; {'id': '28', 'type': 'string', 'children': [], 'value': '"default"'}, {'id': '29', 'type': 'block', 'children': ['30']}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'assignment', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'mapping'}, {'id': '33', 'type': 'call', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'dict'}, {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'call', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'zip'}; {'id': '38', 'type': 'argument_list', 'children': ['39', '44']}, {'id': '39', 'type': 'call', 'children': ['40', '43']}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'G'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '43', 'type': 'argument_list', 'children': []}; {'id': '44', 'type': 'call', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '46', 'type': 'argument_list', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'first_label'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'N'}, {'id': '49', 'type': 'elif_clause', 'children': ['50', '53']}; {'id': '50', 'type': 'comparison_operator', 'children': ['51', '52'], 'value': '=='}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'ordering'}; {'id': '52', 'type': 'string', 'children': [], 'value': '"sorted"'}, {'id': '53', 'type': 'block', 'children': ['54', '62', '68']}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}, {'id': '55', 'type': 'assignment', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'nlist'}, {'id': '57', 'type': 'call', 'children': ['58', '61']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'G'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '61', 'type': 'argument_list', 'children': []}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}, {'id': '63', 'type': 'call', 'children': ['64', '67']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'nlist'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '67', 'type': 'argument_list', 'children': []}; {'id': '68', 'type': 'expression_statement', 'children': ['69']}, {'id': '69', 'type': 'assignment', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'mapping'}, {'id': '71', 'type': 'call', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'dict'}, {'id': '73', 'type': 'argument_list', 'children': ['74']}; {'id': '74', 'type': 'call', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'zip'}; {'id': '76', 'type': 'argument_list', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'nlist'}; {'id': '78', 'type': 'call', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '80', 'type': 'argument_list', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'first_label'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'N'}, {'id': '83', 'type': 'elif_clause', 'children': ['84', '87']}; {'id': '84', 'type': 'comparison_operator', 'children': ['85', '86'], 'value': '=='}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'ordering'}; {'id': '86', 'type': 'string', 'children': [], 'value': '"increasing degree"'}, {'id': '87', 'type': 'block', 'children': ['88', '104', '110']}; {'id': '88', 'type': 'expression_statement', 'children': ['89']}, {'id': '89', 'type': 'assignment', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'dv_pairs'}, {'id': '91', 'type': 'list_comprehension', 'children': ['92', '95']}; {'id': '92', 'type': 'tuple', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '95', 'type': 'for_in_clause', 'children': ['96', '99']}; {'id': '96', 'type': 'tuple_pattern', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '99', 'type': 'call', 'children': ['100', '103']}; {'id': '100', 'type': 'attribute', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'G'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'degree_iter'}, {'id': '103', 'type': 'argument_list', 'children': []}; {'id': '104', 'type': 'expression_statement', 'children': ['105']}, {'id': '105', 'type': 'call', 'children': ['106', '109']}; {'id': '106', 'type': 'attribute', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'dv_pairs'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '109', 'type': 'argument_list', 'children': []}; {'id': '110', 'type': 'expression_statement', 'children': ['111']}, {'id': '111', 'type': 'assignment', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'mapping'}, {'id': '113', 'type': 'call', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'dict'}, {'id': '115', 'type': 'argument_list', 'children': ['116']}; {'id': '116', 'type': 'call', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'zip'}; {'id': '118', 'type': 'argument_list', 'children': ['119', '126']}, {'id': '119', 'type': 'list_comprehension', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '121', 'type': 'for_in_clause', 'children': ['122', '125']}; {'id': '122', 'type': 'pattern_list', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'dv_pairs'}; {'id': '126', 'type': 'call', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '128', 'type': 'argument_list', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'first_label'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'N'}, {'id': '131', 'type': 'elif_clause', 'children': ['132', '135']}; {'id': '132', 'type': 'comparison_operator', 'children': ['133', '134'], 'value': '=='}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'ordering'}; {'id': '134', 'type': 'string', 'children': [], 'value': '"decreasing degree"'}, {'id': '135', 'type': 'block', 'children': ['136', '152', '158', '164']}; {'id': '136', 'type': 'expression_statement', 'children': ['137']}, {'id': '137', 'type': 'assignment', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'dv_pairs'}, {'id': '139', 'type': 'list_comprehension', 'children': ['140', '143']}; {'id': '140', 'type': 'tuple', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '143', 'type': 'for_in_clause', 'children': ['144', '147']}; {'id': '144', 'type': 'tuple_pattern', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '147', 'type': 'call', 'children': ['148', '151']}; {'id': '148', 'type': 'attribute', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'G'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'degree_iter'}, {'id': '151', 'type': 'argument_list', 'children': []}; {'id': '152', 'type': 'expression_statement', 'children': ['153']}, {'id': '153', 'type': 'call', 'children': ['154', '157']}; {'id': '154', 'type': 'attribute', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'dv_pairs'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '157', 'type': 'argument_list', 'children': []}; {'id': '158', 'type': 'expression_statement', 'children': ['159']}, {'id': '159', 'type': 'call', 'children': ['160', '163']}; {'id': '160', 'type': 'attribute', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'dv_pairs'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'reverse'}, {'id': '163', 'type': 'argument_list', 'children': []}; {'id': '164', 'type': 'expression_statement', 'children': ['165']}, {'id': '165', 'type': 'assignment', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'mapping'}, {'id': '167', 'type': 'call', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'dict'}, {'id': '169', 'type': 'argument_list', 'children': ['170']}; {'id': '170', 'type': 'call', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'zip'}; {'id': '172', 'type': 'argument_list', 'children': ['173', '180']}, {'id': '173', 'type': 'list_comprehension', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '175', 'type': 'for_in_clause', 'children': ['176', '179']}; {'id': '176', 'type': 'pattern_list', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'dv_pairs'}; {'id': '180', 'type': 'call', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '182', 'type': 'argument_list', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'first_label'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'N'}, {'id': '185', 'type': 'else_clause', 'children': ['186']}; {'id': '186', 'type': 'block', 'children': ['187']}, {'id': '187', 'type': 'raise_statement', 'children': ['188']}; {'id': '188', 'type': 'call', 'children': ['189', '192']}, {'id': '189', 'type': 'attribute', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'nx'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'NetworkXError'}; {'id': '192', 'type': 'argument_list', 'children': ['193']}, {'id': '193', 'type': 'call', 'children': ['194', '197']}; {'id': '194', 'type': 'attribute', 'children': ['195', '196']}, {'id': '195', 'type': 'string', 'children': [], 'value': "'Unknown node ordering: {0}'"}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '197', 'type': 'argument_list', 'children': ['198']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'ordering'}, {'id': '199', 'type': 'expression_statement', 'children': ['200']}; {'id': '200', 'type': 'assignment', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'H'}; {'id': '202', 'type': 'call', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'relabel_nodes'}; {'id': '204', 'type': 'argument_list', 'children': ['205', '206']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'G'}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'mapping'}, {'id': '207', 'type': 'expression_statement', 'children': ['208']}; {'id': '208', 'type': 'assignment', 'children': ['209', '212']}, {'id': '209', 'type': 'attribute', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'H'}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '212', 'type': 'binary_operator', 'children': ['213', '218'], 'value': '+'}, {'id': '213', 'type': 'binary_operator', 'children': ['214', '215'], 'value': '+'}; {'id': '214', 'type': 'string', 'children': [], 'value': '"("'}, {'id': '215', 'type': 'attribute', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'G'}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '218', 'type': 'string', 'children': [], 'value': '")_with_int_labels"'}, {'id': '219', 'type': 'if_statement', 'children': ['220', '223']}; {'id': '220', 'type': 'comparison_operator', 'children': ['221', '222'], 'value': 'is'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'label_attribute'}; {'id': '222', 'type': 'None', 'children': []}, {'id': '223', 'type': 'block', 'children': ['224']}; {'id': '224', 'type': 'expression_statement', 'children': ['225']}, {'id': '225', 'type': 'call', 'children': ['226', '229']}; {'id': '226', 'type': 'attribute', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'nx'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'set_node_attributes'}, {'id': '229', 'type': 'argument_list', 'children': ['230', '231', '232']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'H'}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'label_attribute'}; {'id': '232', 'type': 'call', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '234', 'type': 'generator_expression', 'children': ['235', '238']}, {'id': '235', 'type': 'tuple', 'children': ['236', '237']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '238', 'type': 'for_in_clause', 'children': ['239', '242']}, {'id': '239', 'type': 'pattern_list', 'children': ['240', '241']}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '242', 'type': 'call', 'children': ['243', '246']}, {'id': '243', 'type': 'attribute', 'children': ['244', '245']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'mapping'}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '246', 'type': 'argument_list', 'children': []}, {'id': '247', 'type': 'return_statement', 'children': ['248']} | def convert_node_labels_to_integers(G, first_label=0, ordering="default",
label_attribute=None):
N = G.number_of_nodes() + first_label
if ordering == "default":
mapping = dict(zip(G.nodes(), range(first_label, N)))
elif ordering == "sorted":
nlist = G.nodes()
nlist.sort()
mapping = dict(zip(nlist, range(first_label, N)))
elif ordering == "increasing degree":
dv_pairs = [(d, n) for (n, d) in G.degree_iter()]
dv_pairs.sort()
mapping = dict(zip([n for d, n in dv_pairs], range(first_label, N)))
elif ordering == "decreasing degree":
dv_pairs = [(d, n) for (n, d) in G.degree_iter()]
dv_pairs.sort()
dv_pairs.reverse()
mapping = dict(zip([n for d, n in dv_pairs], range(first_label, N)))
else:
raise nx.NetworkXError('Unknown node ordering: {0}'.format(ordering))
H = relabel_nodes(G, mapping)
H.name = "(" + G.name + ")_with_int_labels"
if label_attribute is not None:
nx.set_node_attributes(H, label_attribute,
dict((v, k) for k, v in mapping.items()))
return H |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_token_ids'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'tree'}, {'id': '5', 'type': 'block', 'children': ['6', '22', '31']}; {'id': '6', 'type': 'function_definition', 'children': ['7', '8', '10']}, {'id': '7', 'type': 'function_name', 'children': [], 'value': 'tok2time'}; {'id': '8', 'type': 'parameters', 'children': ['9']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'token_element'}; {'id': '10', 'type': 'block', 'children': ['11', '13']}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'string', 'children': [], 'value': "'''\n extracts the time (float) of a <tli> element\n (i.e. the absolute position of a token in the document)\n '''"}, {'id': '13', 'type': 'return_statement', 'children': ['14']}; {'id': '14', 'type': 'call', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}, {'id': '17', 'type': 'subscript', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'token_element'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'attrib'}, {'id': '21', 'type': 'string', 'children': [], 'value': "'time'"}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'timeline'}, {'id': '25', 'type': 'call', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'tree'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'find'}, {'id': '29', 'type': 'argument_list', 'children': ['30']}; {'id': '30', 'type': 'string', 'children': [], 'value': "'//common-timeline'"}, {'id': '31', 'type': 'return_statement', 'children': ['32']}; {'id': '32', 'type': 'generator_expression', 'children': ['33', '38']}, {'id': '33', 'type': 'subscript', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'tok'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'attrib'}, {'id': '37', 'type': 'string', 'children': [], 'value': "'id'"}; {'id': '38', 'type': 'for_in_clause', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'tok'}; {'id': '40', 'type': 'call', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '42', 'type': 'argument_list', 'children': ['43', '52']}, {'id': '43', 'type': 'generator_expression', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'tli'}, {'id': '45', 'type': 'for_in_clause', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'tli'}, {'id': '47', 'type': 'call', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'timeline'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'iterchildren'}, {'id': '51', 'type': 'argument_list', 'children': []}; {'id': '52', 'type': 'keyword_argument', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'key'} | def get_token_ids(tree):
def tok2time(token_element):
'''
extracts the time (float) of a <tli> element
(i.e. the absolute position of a token in the document)
'''
return float(token_element.attrib['time'])
timeline = tree.find('//common-timeline')
return (tok.attrib['id']
for tok in sorted((tli for tli in timeline.iterchildren()),
key=tok2time)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_span'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'docgraph'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'node_id'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '8', 'type': 'False', 'children': []}, {'id': '9', 'type': 'block', 'children': ['10', '38', '42', '62', '103']}; {'id': '10', 'type': 'if_statement', 'children': ['11', '21']}, {'id': '11', 'type': 'boolean_operator', 'children': ['12', '15'], 'value': 'and'}; {'id': '12', 'type': 'comparison_operator', 'children': ['13', '14'], 'value': 'is'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '14', 'type': 'True', 'children': []}, {'id': '15', 'type': 'comparison_operator', 'children': ['16', '20'], 'value': 'is'}; {'id': '16', 'type': 'call', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'is_directed_acyclic_graph'}; {'id': '18', 'type': 'argument_list', 'children': ['19']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'docgraph'}; {'id': '20', 'type': 'False', 'children': []}, {'id': '21', 'type': 'block', 'children': ['22']}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'warnings'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'warn'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'call', 'children': ['29', '35']}, {'id': '29', 'type': 'attribute', 'children': ['30', '34']}; {'id': '30', 'type': 'parenthesized_expression', 'children': ['31'], 'value': '()'}, {'id': '31', 'type': 'concatenated_string', 'children': ['32', '33']}; {'id': '32', 'type': 'string', 'children': [], 'value': '"Can\'t reliably extract span \'{0}\' from cyclical graph\'{1}\'."'}, {'id': '33', 'type': 'string', 'children': [], 'value': '"Maximum recursion depth may be exceeded."'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '35', 'type': 'argument_list', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'node_id'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'docgraph'}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'assignment', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'span'}, {'id': '41', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '42', 'type': 'if_statement', 'children': ['43', '54']}, {'id': '43', 'type': 'comparison_operator', 'children': ['44', '49'], 'value': 'in'}; {'id': '44', 'type': 'binary_operator', 'children': ['45', '48'], 'value': '+'}, {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'docgraph'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'ns'}; {'id': '48', 'type': 'string', 'children': [], 'value': "':token'"}, {'id': '49', 'type': 'subscript', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'docgraph'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'node_id'}; {'id': '54', 'type': 'block', 'children': ['55']}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'call', 'children': ['57', '60']}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'span'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '60', 'type': 'argument_list', 'children': ['61']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'node_id'}; {'id': '62', 'type': 'for_statement', 'children': ['63', '67', '76']}, {'id': '63', 'type': 'pattern_list', 'children': ['64', '65', '66']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'src_id'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'target_id'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'edge_attribs'}, {'id': '67', 'type': 'call', 'children': ['68', '71']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'docgraph'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'out_edges_iter'}, {'id': '71', 'type': 'argument_list', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'node_id'}, {'id': '73', 'type': 'keyword_argument', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '75', 'type': 'True', 'children': []}; {'id': '76', 'type': 'block', 'children': ['77', '83']}, {'id': '77', 'type': 'if_statement', 'children': ['78', '81']}; {'id': '78', 'type': 'comparison_operator', 'children': ['79', '80'], 'value': '=='}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'src_id'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'target_id'}, {'id': '81', 'type': 'block', 'children': ['82']}; {'id': '82', 'type': 'continue_statement', 'children': []}, {'id': '83', 'type': 'if_statement', 'children': ['84', '91']}; {'id': '84', 'type': 'comparison_operator', 'children': ['85', '88'], 'value': '!='}, {'id': '85', 'type': 'subscript', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'edge_attribs'}, {'id': '87', 'type': 'string', 'children': [], 'value': "'edge_type'"}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'EdgeTypes'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'pointing_relation'}, {'id': '91', 'type': 'block', 'children': ['92']}; {'id': '92', 'type': 'expression_statement', 'children': ['93']}, {'id': '93', 'type': 'call', 'children': ['94', '97']}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'span'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'extend'}, {'id': '97', 'type': 'argument_list', 'children': ['98']}; {'id': '98', 'type': 'call', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'get_span'}; {'id': '100', 'type': 'argument_list', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'docgraph'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'target_id'}, {'id': '103', 'type': 'return_statement', 'children': ['104']}; {'id': '104', 'type': 'call', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '106', 'type': 'argument_list', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'span'}; {'id': '108', 'type': 'keyword_argument', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'key'} | def get_span(docgraph, node_id, debug=False):
if debug is True and is_directed_acyclic_graph(docgraph) is False:
warnings.warn(
("Can't reliably extract span '{0}' from cyclical graph'{1}'."
"Maximum recursion depth may be exceeded.").format(node_id,
docgraph))
span = []
if docgraph.ns+':token' in docgraph.node[node_id]:
span.append(node_id)
for src_id, target_id, edge_attribs in docgraph.out_edges_iter(node_id,
data=True):
if src_id == target_id:
continue
if edge_attribs['edge_type'] != EdgeTypes.pointing_relation:
span.extend(get_span(docgraph, target_id))
return sorted(span, key=natural_sort_key) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_get_terminals_and_nonterminals'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'sentence_graph'}, {'id': '5', 'type': 'block', 'children': ['6', '12', '18', '52']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'terminals'}, {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '11', 'type': 'argument_list', 'children': []}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'nonterminals'}, {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '17', 'type': 'argument_list', 'children': []}; {'id': '18', 'type': 'for_statement', 'children': ['19', '20', '25']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'node_id'}; {'id': '20', 'type': 'call', 'children': ['21', '24']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'sentence_graph'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'nodes_iter'}; {'id': '24', 'type': 'argument_list', 'children': []}, {'id': '25', 'type': 'block', 'children': ['26']}; {'id': '26', 'type': 'if_statement', 'children': ['27', '35', '43']}, {'id': '27', 'type': 'comparison_operator', 'children': ['28', '34'], 'value': '>'}; {'id': '28', 'type': 'call', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'sentence_graph'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'out_degree'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'node_id'}; {'id': '34', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '35', 'type': 'block', 'children': ['36']}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}, {'id': '37', 'type': 'call', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'nonterminals'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'add'}, {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'node_id'}, {'id': '43', 'type': 'else_clause', 'children': ['44']}; {'id': '44', 'type': 'block', 'children': ['45']}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'call', 'children': ['47', '50']}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'terminals'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '50', 'type': 'argument_list', 'children': ['51']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'node_id'}; {'id': '52', 'type': 'return_statement', 'children': ['53']}, {'id': '53', 'type': 'expression_list', 'children': ['54', '64', '65']}; {'id': '54', 'type': 'call', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '56', 'type': 'argument_list', 'children': ['57', '61']}, {'id': '57', 'type': 'call', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '59', 'type': 'argument_list', 'children': ['60']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'terminals'}, {'id': '61', 'type': 'keyword_argument', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'natural_sort_key'}; {'id': '64', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '65', 'type': 'call', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '67', 'type': 'argument_list', 'children': ['68', '72']}; {'id': '68', 'type': 'call', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '70', 'type': 'argument_list', 'children': ['71']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'nonterminals'}; {'id': '72', 'type': 'keyword_argument', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'key'} | def _get_terminals_and_nonterminals(sentence_graph):
terminals = set()
nonterminals = set()
for node_id in sentence_graph.nodes_iter():
if sentence_graph.out_degree(node_id) > 0:
nonterminals.add(node_id)
else:
terminals.add(node_id)
return sorted(list(terminals), key=natural_sort_key), \
sorted(list(nonterminals), key=natural_sort_key) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'print_sorted_counter'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'counter'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'tab'}, {'id': '7', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '8', 'type': 'block', 'children': ['9']}, {'id': '9', 'type': 'for_statement', 'children': ['10', '13', '30']}; {'id': '10', 'type': 'pattern_list', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'count'}, {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '15', 'type': 'argument_list', 'children': ['16', '21', '27']}; {'id': '16', 'type': 'call', 'children': ['17', '20']}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'counter'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '20', 'type': 'argument_list', 'children': []}, {'id': '21', 'type': 'keyword_argument', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '23', 'type': 'call', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'itemgetter'}, {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '27', 'type': 'keyword_argument', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'reverse'}, {'id': '29', 'type': 'True', 'children': []}; {'id': '30', 'type': 'block', 'children': ['31']}, {'id': '31', 'type': 'print_statement', 'children': ['32']}; {'id': '32', 'type': 'call', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'string', 'children': [], 'value': '"{0}{1} - {2}"'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '36', 'type': 'argument_list', 'children': ['37', '40', '41']}, {'id': '37', 'type': 'binary_operator', 'children': ['38', '39'], 'value': '*'}; {'id': '38', 'type': 'string', 'children': [], 'value': "'\\t'"}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'tab'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'count'} | def print_sorted_counter(counter, tab=1):
for key, count in sorted(counter.items(), key=itemgetter(1), reverse=True):
print "{0}{1} - {2}".format('\t'*tab, key, count) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sorted_bfs_edges'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'G'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'source'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '20', '28', '36', '44', '68']}, {'id': '9', 'type': 'if_statement', 'children': ['10', '13']}; {'id': '10', 'type': 'comparison_operator', 'children': ['11', '12'], 'value': 'is'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'source'}; {'id': '12', 'type': 'None', 'children': []}, {'id': '13', 'type': 'block', 'children': ['14']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'assignment', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'source'}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'G'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'root'}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'xpos'}, {'id': '23', 'type': 'call', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'horizontal_positions'}, {'id': '25', 'type': 'argument_list', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'G'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'source'}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'assignment', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'visited'}, {'id': '31', 'type': 'call', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'list', 'children': ['35'], 'value': '[source]'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'source'}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}, {'id': '37', 'type': 'assignment', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'source_children'}, {'id': '39', 'type': 'call', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'get_child_nodes'}, {'id': '41', 'type': 'argument_list', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'G'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'source'}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'assignment', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'queue'}, {'id': '47', 'type': 'call', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'deque'}, {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'list', 'children': ['51'], 'value': '[(source, iter(sorted(source_children,\n key=lambda x: xpos[x])))]'}, {'id': '51', 'type': 'tuple', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'source'}, {'id': '53', 'type': 'call', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'iter'}, {'id': '55', 'type': 'argument_list', 'children': ['56']}; {'id': '56', 'type': 'call', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '58', 'type': 'argument_list', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'source_children'}; {'id': '60', 'type': 'keyword_argument', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '62', 'type': 'lambda', 'children': ['63', '65']}, {'id': '63', 'type': 'lambda_parameters', 'children': ['64']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '65', 'type': 'subscript', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'xpos'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '68', 'type': 'while_statement', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'queue'}; {'id': '70', 'type': 'block', 'children': ['71', '79']}, {'id': '71', 'type': 'expression_statement', 'children': ['72']}; {'id': '72', 'type': 'assignment', 'children': ['73', '76']}, {'id': '73', 'type': 'pattern_list', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'children'}; {'id': '76', 'type': 'subscript', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'queue'}; {'id': '78', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '79', 'type': 'try_statement', 'children': ['80', '136']}; {'id': '80', 'type': 'block', 'children': ['81', '88']}, {'id': '81', 'type': 'expression_statement', 'children': ['82']}; {'id': '82', 'type': 'assignment', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'child'}; {'id': '84', 'type': 'call', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'next'}; {'id': '86', 'type': 'argument_list', 'children': ['87']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'children'}; {'id': '88', 'type': 'if_statement', 'children': ['89', '92']}, {'id': '89', 'type': 'comparison_operator', 'children': ['90', '91'], 'value': 'not'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'child'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'visited'}; {'id': '92', 'type': 'block', 'children': ['93', '98', '105', '113']}, {'id': '93', 'type': 'expression_statement', 'children': ['94']}; {'id': '94', 'type': 'yield', 'children': ['95']}, {'id': '95', 'type': 'expression_list', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'child'}; {'id': '98', 'type': 'expression_statement', 'children': ['99']}, {'id': '99', 'type': 'call', 'children': ['100', '103']}; {'id': '100', 'type': 'attribute', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'visited'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'add'}, {'id': '103', 'type': 'argument_list', 'children': ['104']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'child'}, {'id': '105', 'type': 'expression_statement', 'children': ['106']}; {'id': '106', 'type': 'assignment', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'grandchildren'}; {'id': '108', 'type': 'call', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'get_child_nodes'}; {'id': '110', 'type': 'argument_list', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'G'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'child'}, {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'call', 'children': ['115', '118']}, {'id': '115', 'type': 'attribute', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'queue'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '118', 'type': 'argument_list', 'children': ['119']}, {'id': '119', 'type': 'tuple', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'child'}, {'id': '121', 'type': 'call', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'iter'}, {'id': '123', 'type': 'argument_list', 'children': ['124']}; {'id': '124', 'type': 'call', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '126', 'type': 'argument_list', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'grandchildren'}; {'id': '128', 'type': 'keyword_argument', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '130', 'type': 'lambda', 'children': ['131', '133']}, {'id': '131', 'type': 'lambda_parameters', 'children': ['132']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '133', 'type': 'subscript', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'xpos'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '136', 'type': 'except_clause', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'StopIteration'}; {'id': '138', 'type': 'block', 'children': ['139']}, {'id': '139', 'type': 'expression_statement', 'children': ['140']}; {'id': '140', 'type': 'call', 'children': ['141', '144']}, {'id': '141', 'type': 'attribute', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'queue'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'popleft'} | def sorted_bfs_edges(G, source=None):
if source is None:
source = G.root
xpos = horizontal_positions(G, source)
visited = set([source])
source_children = get_child_nodes(G, source)
queue = deque([(source, iter(sorted(source_children,
key=lambda x: xpos[x])))])
while queue:
parent, children = queue[0]
try:
child = next(children)
if child not in visited:
yield parent, child
visited.add(child)
grandchildren = get_child_nodes(G, child)
queue.append((child, iter(sorted(grandchildren,
key=lambda x: xpos[x]))))
except StopIteration:
queue.popleft() |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sorted_bfs_successors'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'G'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'source'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '20', '27', '46']}, {'id': '9', 'type': 'if_statement', 'children': ['10', '13']}; {'id': '10', 'type': 'comparison_operator', 'children': ['11', '12'], 'value': 'is'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'source'}; {'id': '12', 'type': 'None', 'children': []}, {'id': '13', 'type': 'block', 'children': ['14']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'assignment', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'source'}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'G'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'root'}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'successors'}, {'id': '23', 'type': 'call', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'defaultdict'}, {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '27', 'type': 'for_statement', 'children': ['28', '31', '36']}; {'id': '28', 'type': 'pattern_list', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'src'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'target'}, {'id': '31', 'type': 'call', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'sorted_bfs_edges'}, {'id': '33', 'type': 'argument_list', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'G'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'source'}; {'id': '36', 'type': 'block', 'children': ['37']}, {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'call', 'children': ['39', '44']}, {'id': '39', 'type': 'attribute', 'children': ['40', '43']}; {'id': '40', 'type': 'subscript', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'successors'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'src'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'target'}; {'id': '46', 'type': 'return_statement', 'children': ['47']}, {'id': '47', 'type': 'call', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'dict'}, {'id': '49', 'type': 'argument_list', 'children': ['50']} | def sorted_bfs_successors(G, source=None):
if source is None:
source = G.root
successors = defaultdict(list)
for src, target in sorted_bfs_edges(G, source):
successors[src].append(target)
return dict(successors) |
Subsets and Splits