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README.md
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---
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# For reference on dataset card metadata, see the spec: https://github.com/huggingface/hub-docs/blob/main/datasetcard.md?plain=1
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# Doc / guide: https://huggingface.co/docs/hub/datasets-cards
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{}
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---
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## Pretokenized version of [OMGprot50](https://huggingface.co/datasets/tattabio/OMG_prot50) in uint8 (ESM2 tokens).
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Thanks [Tatta Bio](https://huggingface.co/tattabio) for putting together such an amazing base dataset!
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Each shard (.bin) is 100,000,000 tokens
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There are also added validation sets and test sets for evalution purposes, including [ESM2 speed runs](https://github.com/Synthyra/SpeedRunningESM2).
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OMG prot50 was clusterd at 50% identity, so random splits are nonredundant to the training set by default.
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Random splits of 10,000 make up the base components of the validation and test sets.
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To the test set, we also add all new Uniprot entries since OMG creation that have transcript level evidence after dedpulication.
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### Scripts
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[To download](https://github.com/Synthyra/SpeedRunningESM2/blob/master/data/download_omgprot50.py)
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[The original dataset creation](https://github.com/Synthyra/SpeedRunningESM2/blob/master/data/create_omgprot50_splits.py)
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[Tokenization](https://github.com/Synthyra/SpeedRunningESM2/blob/master/data/process_omgprot50.py)
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