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  license: apache-2.0
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  license: apache-2.0
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+ ### Introduction
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+ We propose the **MiniAtlas** dataset, containing more than 100,000 scATAC-seq with paired scRNA-seq as training data, across 19 tissues and 56 cell types, facilitating the training of foundation models. This dataset can be used to training single-cell multiomics fundation model.
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+ ![image-20250204135812866](./assets/overview.png)
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+ ### Subsets
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+ This dataset is divided into four subsets to accommodate different research needs and access limitations:
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+ 1. `full_atlas_atac.h5ad` and `full_atlas_rna.h5ad` (~120k samples): full data of MiniAtlas, containing all tissues and cell types.
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+ 2. Evaluation set for different tissues: containing three tissues (Kidney, PBMC, BMMC), can be used to cell-type annotation or RNA-prediction fine-tuning and evaluation.
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+ ### Citation
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+ If you find MiniAtlas useful for your research and applications, please cite using this BibTeX:
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+ ```
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+ ```
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