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MedINST32

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1
- ---
2
- license: cc-by-4.0
3
- configs:
4
- - config_name: unseen_train_100k
5
- data_files:
6
- - split: train
7
- path: "unseen_train_100k.json"
8
- - config_name: merged_train_100k
9
- data_files:
10
- - split: train
11
- path: "merged_train_100k.json"
12
-
13
- - config_name: tmVar-v3
14
- data_files:
15
- - split: test
16
- path: "unseen_tests/tmVar-v3_test.json"
17
- - config_name: SciFact
18
- data_files:
19
- - split: test
20
- path: "unseen_tests/SciFact_test.json"
21
- - config_name: tmVar-v3-NED
22
- data_files:
23
- - split: test
24
- path: "unseen_tests/tmVar-v3-NED_test.json"
25
- - config_name: Multi-XScience
26
- data_files:
27
- - split: test
28
- path: "unseen_tests/Multi-XScience_test.json"
29
- - config_name: NCBI-disease
30
- data_files:
31
- - split: test
32
- path: "unseen_tests/NCBI-disease_test.json"
33
- - config_name: ParaMed
34
- data_files:
35
- - split: test
36
- path: "unseen_tests/ParaMed_test.json"
37
- - config_name: PubMedQA-labeled
38
- data_files:
39
- - split: test
40
- path: "unseen_tests/PubMedQA-labeled_test.json"
41
- - config_name: MeDAL
42
- data_files:
43
- - split: test
44
- path: "unseen_tests/MeDAL_test.json"
45
- - config_name: MedDialog
46
- data_files:
47
- - split: test
48
- path: "unseen_tests/MedDialog_test.json"
49
- - config_name: MedQA
50
- data_files:
51
- - split: test
52
- path: "unseen_tests/MedQA_test.json"
53
- - config_name: ManConCorpus
54
- data_files:
55
- - split: test
56
- path: "unseen_tests/ManConCorpus_test.json"
57
- - config_name: Hallmarks-of-Cancer
58
- data_files:
59
- - split: test
60
- path: "unseen_tests/Hallmarks-of-Cancer_test.json"
61
- - config_name: MLEE-COREF
62
- data_files:
63
- - split: test
64
- path: "unseen_tests/MLEE-COREF_test.json"
65
- - config_name: MLEE-EE
66
- data_files:
67
- - split: test
68
- path: "unseen_tests/MLEE-EE_test.json"
69
- - config_name: BioRED
70
- data_files:
71
- - split: test
72
- path: "unseen_tests/BioRED_test.json"
73
- - config_name: CoVERt
74
- data_files:
75
- - split: test
76
- path: "unseen_tests/CoVERt_test.json"
77
- - config_name: BioNLP-2011-ID
78
- data_files:
79
- - split: test
80
- path: "unseen_tests/BioNLP-2011-ID_test.json"
81
- - config_name: BioNLP-2011-REL
82
- data_files:
83
- - split: test
84
- path: "unseen_tests/BioNLP-2011-REL_test.json"
85
- - config_name: BioNLP-2013-CG
86
- data_files:
87
- - split: test
88
- path: "unseen_tests/BioNLP-2013-CG_test.json"
89
- - config_name: BioNLP-2013-GE
90
- data_files:
91
- - split: test
92
- path: "unseen_tests/BioNLP-2013-GE_test.json"
93
- - config_name: BioNLP-2013-GRO
94
- data_files:
95
- - split: test
96
- path: "unseen_tests/BioNLP-2013-GRO_test.json"
97
- - config_name: BioNLP-2013-PC
98
- data_files:
99
- - split: test
100
- path: "unseen_tests/BioNLP-2013-PC_test.json"
101
- - config_name: BC5CDR-RE
102
- data_files:
103
- - split: test
104
- path: "unseen_tests/BC5CDR-RE_test.json"
105
- - config_name: BC5CDR
106
- data_files:
107
- - split: test
108
- path: "unseen_tests/BC5CDR_test.json"
109
- - config_name: BioASQ-Task-B-yesno
110
- data_files:
111
- - split: test
112
- path: "unseen_tests/BioASQ-Task-B-yesno_test.json"
113
- - config_name: BioInfer-RE
114
- data_files:
115
- - split: test
116
- path: "unseen_tests/BioInfer-RE_test.json"
117
- - config_name: BioNLP-2009
118
- data_files:
119
- - split: test
120
- path: "unseen_tests/BioNLP-2009_test.json"
121
- - config_name: BioNLP-2011-GE
122
- data_files:
123
- - split: test
124
- path: "unseen_tests/BioNLP-2011-GE_test.json"
125
- - config_name: BIOSSES
126
- data_files:
127
- - split: test
128
- path: "unseen_tests/BIOSSES_test.json"
129
- - config_name: AnEM-COREF
130
- data_files:
131
- - split: test
132
- path: "unseen_tests/AnEM-COREF_test.json"
133
- - config_name: AnEM-RE
134
- data_files:
135
- - split: test
136
- path: "unseen_tests/AnEM-RE_test.json"
137
- - config_name: AnEM
138
- data_files:
139
- - split: test
140
- path: "unseen_tests/AnEM_test.json"
141
-
142
- - config_name: tmVar-v3-zs
143
- data_files:
144
- - split: test
145
- path: "unseen_tests_zs/tmVar-v3_test.json"
146
- - config_name: tmVar-v3-NED-zs
147
- data_files:
148
- - split: test
149
- path: "unseen_tests_zs/tmVar-v3-NED_test.json"
150
- - config_name: SciFact-zs
151
- data_files:
152
- - split: test
153
- path: "unseen_tests_zs/SciFact_test.json"
154
- - config_name: NCBI-disease-zs
155
- data_files:
156
- - split: test
157
- path: "unseen_tests_zs/NCBI-disease_test.json"
158
- - config_name: ParaMed-zs
159
- data_files:
160
- - split: test
161
- path: "unseen_tests_zs/ParaMed_test.json"
162
- - config_name: PubMedQA-labeled-zs
163
- data_files:
164
- - split: test
165
- path: "unseen_tests_zs/PubMedQA-labeled_test.json"
166
- - config_name: Multi-XScience-zs
167
- data_files:
168
- - split: test
169
- path: "unseen_tests_zs/Multi-XScience_test.json"
170
- - config_name: MedQA-zs
171
- data_files:
172
- - split: test
173
- path: "unseen_tests_zs/MedQA_test.json"
174
- - config_name: MeDAL-zs
175
- data_files:
176
- - split: test
177
- path: "unseen_tests_zs/MeDAL_test.json"
178
- - config_name: MedDialog-zs
179
- data_files:
180
- - split: test
181
- path: "unseen_tests_zs/MedDialog_test.json"
182
- - config_name: ManConCorpus-zs
183
- data_files:
184
- - split: test
185
- path: "unseen_tests_zs/ManConCorpus_test.json"
186
- - config_name: MLEE-COREF-zs
187
- data_files:
188
- - split: test
189
- path: "unseen_tests_zs/MLEE-COREF_test.json"
190
- - config_name: MLEE-EE-zs
191
- data_files:
192
- - split: test
193
- path: "unseen_tests_zs/MLEE-EE_test.json"
194
- - config_name: Hallmarks-of-Cancer-zs
195
- data_files:
196
- - split: test
197
- path: "unseen_tests_zs/Hallmarks-of-Cancer_test.json"
198
- - config_name: BioRED-zs
199
- data_files:
200
- - split: test
201
- path: "unseen_tests_zs/BioRED_test.json"
202
- - config_name: CoVERt-zs
203
- data_files:
204
- - split: test
205
- path: "unseen_tests_zs/CoVERt_test.json"
206
- - config_name: BioNLP-2013-GE-zs
207
- data_files:
208
- - split: test
209
- path: "unseen_tests_zs/BioNLP-2013-GE_test.json"
210
- - config_name: BioNLP-2013-GRO-zs
211
- data_files:
212
- - split: test
213
- path: "unseen_tests_zs/BioNLP-2013-GRO_test.json"
214
- - config_name: BioNLP-2013-PC-zs
215
- data_files:
216
- - split: test
217
- path: "unseen_tests_zs/BioNLP-2013-PC_test.json"
218
- - config_name: BioNLP-2011-GE-zs
219
- data_files:
220
- - split: test
221
- path: "unseen_tests_zs/BioNLP-2011-GE_test.json"
222
- - config_name: BioNLP-2011-ID-zs
223
- data_files:
224
- - split: test
225
- path: "unseen_tests_zs/BioNLP-2011-ID_test.json"
226
- - config_name: BioNLP-2011-REL-zs
227
- data_files:
228
- - split: test
229
- path: "unseen_tests_zs/BioNLP-2011-REL_test.json"
230
- - config_name: BioNLP-2013-CG-zs
231
- data_files:
232
- - split: test
233
- path: "unseen_tests_zs/BioNLP-2013-CG_test.json"
234
- - config_name: BC5CDR-zs
235
- data_files:
236
- - split: test
237
- path: "unseen_tests_zs/BC5CDR_test.json"
238
- - config_name: BioASQ-Task-B-yesno-zs
239
- data_files:
240
- - split: test
241
- path: "unseen_tests_zs/BioASQ-Task-B-yesno_test.json"
242
- - config_name: BioInfer-RE-zs
243
- data_files:
244
- - split: test
245
- path: "unseen_tests_zs/BioInfer-RE_test.json"
246
- - config_name: BioNLP-2009-zs
247
- data_files:
248
- - split: test
249
- path: "unseen_tests_zs/BioNLP-2009_test.json"
250
- - config_name: BIOSSES-zs
251
- data_files:
252
- - split: test
253
- path: "unseen_tests_zs/BIOSSES_test.json"
254
- - config_name: AnEM-COREF-zs
255
- data_files:
256
- - split: test
257
- path: "unseen_tests_zs/AnEM-COREF_test.json"
258
- - config_name: AnEM-RE-zs
259
- data_files:
260
- - split: test
261
- path: "unseen_tests_zs/AnEM-RE_test.json"
262
- - config_name: AnEM-zs
263
- data_files:
264
- - split: test
265
- path: "unseen_tests_zs/AnEM_test.json"
266
- - config_name: BC5CDR-RE-zs
267
- data_files:
268
- - split: test
269
- path: "unseen_tests_zs/BC5CDR-RE_test.json"
270
-
271
-
272
- ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ license: cc-by-4.0
3
+ configs:
4
+ - config_name: unseen_train_100k
5
+ data_files:
6
+ - split: train
7
+ path: "unseen_train_100k.json"
8
+ - config_name: merged_train_100k
9
+ data_files:
10
+ - split: train
11
+ path: "merged_train_100k.json"
12
+
13
+ - config_name: tmVar-v3
14
+ data_files:
15
+ - split: test
16
+ path: "unseen_tests/tmVar-v3_test.json"
17
+ - config_name: SciFact
18
+ data_files:
19
+ - split: test
20
+ path: "unseen_tests/SciFact_test.json"
21
+ - config_name: tmVar-v3-NED
22
+ data_files:
23
+ - split: test
24
+ path: "unseen_tests/tmVar-v3-NED_test.json"
25
+ - config_name: Multi-XScience
26
+ data_files:
27
+ - split: test
28
+ path: "unseen_tests/Multi-XScience_test.json"
29
+ - config_name: NCBI-disease
30
+ data_files:
31
+ - split: test
32
+ path: "unseen_tests/NCBI-disease_test.json"
33
+ - config_name: ParaMed
34
+ data_files:
35
+ - split: test
36
+ path: "unseen_tests/ParaMed_test.json"
37
+ - config_name: PubMedQA-labeled
38
+ data_files:
39
+ - split: test
40
+ path: "unseen_tests/PubMedQA-labeled_test.json"
41
+ - config_name: MeDAL
42
+ data_files:
43
+ - split: test
44
+ path: "unseen_tests/MeDAL_test.json"
45
+ - config_name: MedDialog
46
+ data_files:
47
+ - split: test
48
+ path: "unseen_tests/MedDialog_test.json"
49
+ - config_name: MedQA
50
+ data_files:
51
+ - split: test
52
+ path: "unseen_tests/MedQA_test.json"
53
+ - config_name: ManConCorpus
54
+ data_files:
55
+ - split: test
56
+ path: "unseen_tests/ManConCorpus_test.json"
57
+ - config_name: Hallmarks-of-Cancer
58
+ data_files:
59
+ - split: test
60
+ path: "unseen_tests/Hallmarks-of-Cancer_test.json"
61
+ - config_name: MLEE-COREF
62
+ data_files:
63
+ - split: test
64
+ path: "unseen_tests/MLEE-COREF_test.json"
65
+ - config_name: MLEE-EE
66
+ data_files:
67
+ - split: test
68
+ path: "unseen_tests/MLEE-EE_test.json"
69
+ - config_name: BioRED
70
+ data_files:
71
+ - split: test
72
+ path: "unseen_tests/BioRED_test.json"
73
+ - config_name: CoVERt
74
+ data_files:
75
+ - split: test
76
+ path: "unseen_tests/CoVERt_test.json"
77
+ - config_name: BioNLP-2011-ID
78
+ data_files:
79
+ - split: test
80
+ path: "unseen_tests/BioNLP-2011-ID_test.json"
81
+ - config_name: BioNLP-2011-REL
82
+ data_files:
83
+ - split: test
84
+ path: "unseen_tests/BioNLP-2011-REL_test.json"
85
+ - config_name: BioNLP-2013-CG
86
+ data_files:
87
+ - split: test
88
+ path: "unseen_tests/BioNLP-2013-CG_test.json"
89
+ - config_name: BioNLP-2013-GE
90
+ data_files:
91
+ - split: test
92
+ path: "unseen_tests/BioNLP-2013-GE_test.json"
93
+ - config_name: BioNLP-2013-GRO
94
+ data_files:
95
+ - split: test
96
+ path: "unseen_tests/BioNLP-2013-GRO_test.json"
97
+ - config_name: BioNLP-2013-PC
98
+ data_files:
99
+ - split: test
100
+ path: "unseen_tests/BioNLP-2013-PC_test.json"
101
+ - config_name: BC5CDR-RE
102
+ data_files:
103
+ - split: test
104
+ path: "unseen_tests/BC5CDR-RE_test.json"
105
+ - config_name: BC5CDR
106
+ data_files:
107
+ - split: test
108
+ path: "unseen_tests/BC5CDR_test.json"
109
+ - config_name: BioASQ-Task-B-yesno
110
+ data_files:
111
+ - split: test
112
+ path: "unseen_tests/BioASQ-Task-B-yesno_test.json"
113
+ - config_name: BioInfer-RE
114
+ data_files:
115
+ - split: test
116
+ path: "unseen_tests/BioInfer-RE_test.json"
117
+ - config_name: BioNLP-2009
118
+ data_files:
119
+ - split: test
120
+ path: "unseen_tests/BioNLP-2009_test.json"
121
+ - config_name: BioNLP-2011-GE
122
+ data_files:
123
+ - split: test
124
+ path: "unseen_tests/BioNLP-2011-GE_test.json"
125
+ - config_name: BIOSSES
126
+ data_files:
127
+ - split: test
128
+ path: "unseen_tests/BIOSSES_test.json"
129
+ - config_name: AnEM-COREF
130
+ data_files:
131
+ - split: test
132
+ path: "unseen_tests/AnEM-COREF_test.json"
133
+ - config_name: AnEM-RE
134
+ data_files:
135
+ - split: test
136
+ path: "unseen_tests/AnEM-RE_test.json"
137
+ - config_name: AnEM
138
+ data_files:
139
+ - split: test
140
+ path: "unseen_tests/AnEM_test.json"
141
+
142
+ - config_name: tmVar-v3-zs
143
+ data_files:
144
+ - split: test
145
+ path: "unseen_tests_zs/tmVar-v3_test.json"
146
+ - config_name: tmVar-v3-NED-zs
147
+ data_files:
148
+ - split: test
149
+ path: "unseen_tests_zs/tmVar-v3-NED_test.json"
150
+ - config_name: SciFact-zs
151
+ data_files:
152
+ - split: test
153
+ path: "unseen_tests_zs/SciFact_test.json"
154
+ - config_name: NCBI-disease-zs
155
+ data_files:
156
+ - split: test
157
+ path: "unseen_tests_zs/NCBI-disease_test.json"
158
+ - config_name: ParaMed-zs
159
+ data_files:
160
+ - split: test
161
+ path: "unseen_tests_zs/ParaMed_test.json"
162
+ - config_name: PubMedQA-labeled-zs
163
+ data_files:
164
+ - split: test
165
+ path: "unseen_tests_zs/PubMedQA-labeled_test.json"
166
+ - config_name: Multi-XScience-zs
167
+ data_files:
168
+ - split: test
169
+ path: "unseen_tests_zs/Multi-XScience_test.json"
170
+ - config_name: MedQA-zs
171
+ data_files:
172
+ - split: test
173
+ path: "unseen_tests_zs/MedQA_test.json"
174
+ - config_name: MeDAL-zs
175
+ data_files:
176
+ - split: test
177
+ path: "unseen_tests_zs/MeDAL_test.json"
178
+ - config_name: MedDialog-zs
179
+ data_files:
180
+ - split: test
181
+ path: "unseen_tests_zs/MedDialog_test.json"
182
+ - config_name: ManConCorpus-zs
183
+ data_files:
184
+ - split: test
185
+ path: "unseen_tests_zs/ManConCorpus_test.json"
186
+ - config_name: MLEE-COREF-zs
187
+ data_files:
188
+ - split: test
189
+ path: "unseen_tests_zs/MLEE-COREF_test.json"
190
+ - config_name: MLEE-EE-zs
191
+ data_files:
192
+ - split: test
193
+ path: "unseen_tests_zs/MLEE-EE_test.json"
194
+ - config_name: Hallmarks-of-Cancer-zs
195
+ data_files:
196
+ - split: test
197
+ path: "unseen_tests_zs/Hallmarks-of-Cancer_test.json"
198
+ - config_name: BioRED-zs
199
+ data_files:
200
+ - split: test
201
+ path: "unseen_tests_zs/BioRED_test.json"
202
+ - config_name: CoVERt-zs
203
+ data_files:
204
+ - split: test
205
+ path: "unseen_tests_zs/CoVERt_test.json"
206
+ - config_name: BioNLP-2013-GE-zs
207
+ data_files:
208
+ - split: test
209
+ path: "unseen_tests_zs/BioNLP-2013-GE_test.json"
210
+ - config_name: BioNLP-2013-GRO-zs
211
+ data_files:
212
+ - split: test
213
+ path: "unseen_tests_zs/BioNLP-2013-GRO_test.json"
214
+ - config_name: BioNLP-2013-PC-zs
215
+ data_files:
216
+ - split: test
217
+ path: "unseen_tests_zs/BioNLP-2013-PC_test.json"
218
+ - config_name: BioNLP-2011-GE-zs
219
+ data_files:
220
+ - split: test
221
+ path: "unseen_tests_zs/BioNLP-2011-GE_test.json"
222
+ - config_name: BioNLP-2011-ID-zs
223
+ data_files:
224
+ - split: test
225
+ path: "unseen_tests_zs/BioNLP-2011-ID_test.json"
226
+ - config_name: BioNLP-2011-REL-zs
227
+ data_files:
228
+ - split: test
229
+ path: "unseen_tests_zs/BioNLP-2011-REL_test.json"
230
+ - config_name: BioNLP-2013-CG-zs
231
+ data_files:
232
+ - split: test
233
+ path: "unseen_tests_zs/BioNLP-2013-CG_test.json"
234
+ - config_name: BC5CDR-zs
235
+ data_files:
236
+ - split: test
237
+ path: "unseen_tests_zs/BC5CDR_test.json"
238
+ - config_name: BioASQ-Task-B-yesno-zs
239
+ data_files:
240
+ - split: test
241
+ path: "unseen_tests_zs/BioASQ-Task-B-yesno_test.json"
242
+ - config_name: BioInfer-RE-zs
243
+ data_files:
244
+ - split: test
245
+ path: "unseen_tests_zs/BioInfer-RE_test.json"
246
+ - config_name: BioNLP-2009-zs
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+ data_files:
248
+ - split: test
249
+ path: "unseen_tests_zs/BioNLP-2009_test.json"
250
+ - config_name: BIOSSES-zs
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+ data_files:
252
+ - split: test
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+ path: "unseen_tests_zs/BIOSSES_test.json"
254
+ - config_name: AnEM-COREF-zs
255
+ data_files:
256
+ - split: test
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+ path: "unseen_tests_zs/AnEM-COREF_test.json"
258
+ - config_name: AnEM-RE-zs
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+ data_files:
260
+ - split: test
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+ path: "unseen_tests_zs/AnEM-RE_test.json"
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+ - config_name: AnEM-zs
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+ data_files:
264
+ - split: test
265
+ path: "unseen_tests_zs/AnEM_test.json"
266
+ - config_name: BC5CDR-RE-zs
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+ data_files:
268
+ - split: test
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+ path: "unseen_tests_zs/BC5CDR-RE_test.json"
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+
271
+
272
+ ---
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+
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+
275
+ This repository contains the data of the paper [MedINST: Meta Dataset of Biomedical Instructions](https://huggingface.co/papers/2410.13458).
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+
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+ # Citation
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+ ```
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+ @article{han2024medinst,
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+ title={MedINST: Meta Dataset of Biomedical Instructions},
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+ author={Han, Wenhan and Fang, Meng and Zhang, Zihan and Yin, Yu and Song, Zirui and Chen, Ling and Pechenizkiy, Mykola and Chen, Qingyu},
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+ journal={arXiv preprint arXiv:2410.13458},
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+ year={2024}
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+ }
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+ ```