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cna_sv/CNA_SV_counts.csv

@@ -0,0 +1,1543 @@
+study,DEL,DUP,TRA,h2hINV,t2tINV,cna,len,total_mut
+Breast-AdenoCa,47,166,47,9,8,252,21.379545907734414,6525
+Breast-AdenoCa,116,39,36,30,28,158,20.75583084224177,6764
+Breast-AdenoCa,45,62,34,18,16,320,21.1529584589342,5479
+Breast-AdenoCa,91,21,42,13,12,150,21.809169588829562,13333
+Breast-AdenoCa,36,145,57,7,13,135,21.26682922140599,7168
+Breast-AdenoCa,23,18,27,15,15,200,21.81687669361201,3481
+Breast-AdenoCa,27,33,7,6,16,210,21.726076033074296,2200
+Breast-AdenoCa,44,43,58,41,42,104,20.64485987024795,2142
+Breast-AdenoCa,96,56,34,27,27,288,21.68488041032435,11929
+Breast-AdenoCa,112,18,51,33,35,139,21.81871869018385,11663
+Breast-AdenoCa,169,40,114,55,48,334,21.7715740368894,9858
+Breast-AdenoCa,45,26,44,38,39,202,20.93176157249701,5021
+Breast-AdenoCa,65,39,123,51,51,507,21.757834631797373,6017
+Breast-AdenoCa,27,19,19,22,20,64,20.980868140484574,7351
+Breast-AdenoCa,51,45,24,31,31,234,21.790389154428144,2682
+Breast-AdenoCa,101,142,107,29,37,368,21.78323400606586,10988
+Prost-AdenoCA,3,0,6,0,1,26,19.915090523996955,10232
+Prost-AdenoCA,26,6,17,5,5,43,19.866811114839464,3800
+Prost-AdenoCA,14,3,11,3,3,34,20.059246666821416,6558
+Prost-AdenoCA,17,3,21,10,6,41,19.51106620488218,2668
+Prost-AdenoCA,8,4,17,4,2,22,19.838301218485412,1730
+Prost-AdenoCA,16,11,18,7,10,32,20.139849948469468,1788
+Prost-AdenoCA,8,4,12,2,2,22,19.95676930133309,1664
+Prost-AdenoCA,2,0,4,1,1,10,19.48990824773703,1279
+Prost-AdenoCA,2,0,3,1,1,13,19.549344512829048,1335
+Prost-AdenoCA,7,0,4,0,0,16,19.706876034814464,1964
+Prost-AdenoCA,6,2,12,5,2,32,19.64464593698041,1678
+Prost-AdenoCA,4,1,7,3,1,11,19.234512041293847,1442
+Prost-AdenoCA,11,3,29,6,3,30,19.82431830113162,1485
+Prost-AdenoCA,18,0,17,5,6,19,19.534696560141775,1905
+Prost-AdenoCA,5,0,3,0,0,8,19.30502100438292,1185
+Eso-AdenoCa,66,30,39,13,17,124,21.289946573257396,24695
+Eso-AdenoCa,45,38,43,20,16,193,21.557959418092846,26919
+Eso-AdenoCa,23,7,15,4,4,83,20.85680471091795,19132
+Eso-AdenoCa,34,11,6,1,3,72,21.831913742929704,11477
+Eso-AdenoCa,39,9,10,15,17,135,21.783695904934554,7121
+Eso-AdenoCa,108,84,63,32,30,343,21.659606727439126,76959
+Breast-AdenoCa,8,8,22,4,4,63,20.26264043671697,3154
+Breast-AdenoCa,14,17,0,13,9,72,20.40498845702709,2870
+Breast-AdenoCa,38,25,29,31,32,52,20.075867249187624,3414
+Breast-AdenoCa,3,0,0,1,1,7,19.09649459149807,1726
+Stomach-AdenoCA,9,7,23,10,9,52,20.917933824424452,2445
+Stomach-AdenoCA,67,16,17,16,18,175,21.719138121193726,18357
+Breast-AdenoCa,9,6,0,2,4,47,21.82382793017623,2721
+Biliary-AdenoCA,17,8,6,9,8,38,20.37894157550535,6961
+Biliary-AdenoCA,20,2,1,1,2,32,20.378509405945465,10977
+Breast-AdenoCa,18,15,9,12,18,89,20.69869816805025,2473
+Stomach-AdenoCA,12,20,30,12,11,79,21.007839869191244,3947
+Breast-AdenoCa,53,30,75,36,41,282,21.756916275774888,3110
+Stomach-AdenoCA,41,103,36,21,22,243,21.10001748434451,14450
+Breast-AdenoCa,5,2,1,1,3,2,18.915479815867133,3299
+Breast-AdenoCa,43,35,33,33,36,116,21.051203293585125,3883
+Breast-AdenoCa,6,1,7,2,3,18,19.961503906973782,2071
+Breast-AdenoCa,1,1,0,2,2,14,19.990015555483595,2338
+Breast-AdenoCa,18,21,18,15,19,88,20.454517174915566,2520
+Breast-AdenoCa,1,0,0,0,0,11,20.42643886776563,1646
+Stomach-AdenoCA,4,1,2,1,1,6,19.244779920852636,415
+Stomach-AdenoCA,11,7,0,0,0,6,19.46534931316798,13962
+Breast-AdenoCa,9,5,8,2,4,43,19.360410545987605,2408
+Breast-AdenoCa,22,13,14,21,25,48,21.588228294031733,2709
+Breast-AdenoCa,9,2,26,3,6,36,20.15399956881062,8645
+Stomach-AdenoCA,127,178,52,45,40,482,21.695968491171726,43645
+Breast-AdenoCa,0,1,2,0,0,7,19.29522154674146,1578
+Stomach-AdenoCA,47,22,14,9,9,172,21.704902649669002,16442
+Stomach-AdenoCA,46,3,3,3,3,2,19.18449196814622,4486
+Breast-AdenoCa,1,0,0,0,0,39,21.824561147423676,2366
+Stomach-AdenoCA,90,121,26,35,37,267,21.257393949870224,46417
+Biliary-AdenoCA,1,8,0,1,0,33,20.44667436908094,3624
+Breast-AdenoCa,77,19,27,26,12,120,20.98888520013475,5283
+Breast-AdenoCa,19,17,9,9,12,36,20.931877549903408,3541
+Breast-AdenoCa,0,1,0,0,0,6,19.158869313654012,1933
+Breast-AdenoCa,30,29,5,11,16,83,20.563884680661808,12876
+Breast-AdenoCa,9,4,4,2,4,24,20.22485726485127,4098
+Breast-AdenoCa,83,65,57,22,22,144,21.22825491376122,8442
+Stomach-AdenoCA,121,101,50,20,25,449,21.81213154833552,19678
+Biliary-AdenoCA,35,34,5,17,17,144,21.80042567374592,14457
+Stomach-AdenoCA,10,44,12,8,14,31,19.695977310327972,3236
+Stomach-AdenoCA,21,9,1,1,0,33,20.313591562212363,27495
+Breast-AdenoCa,35,20,93,23,32,153,21.064325532213257,1903
+Stomach-AdenoCA,80,49,16,12,13,104,21.014996537133282,7504
+Breast-AdenoCa,143,34,104,23,27,332,21.81598316542866,11068
+Breast-AdenoCa,23,20,0,21,18,54,20.268566697449334,1355
+Biliary-AdenoCA,48,5,8,12,7,56,20.047188850062156,5926
+Breast-AdenoCa,6,8,10,10,11,29,19.95450659920221,1928
+Breast-AdenoCa,5,0,9,3,4,12,20.57610233765396,2544
+Breast-AdenoCa,29,19,44,29,23,131,20.613149410965637,5695
+Breast-AdenoCa,1,0,1,0,0,11,20.137413605620626,1441
+Biliary-AdenoCA,23,6,15,25,27,147,21.816449888021225,13826
+Biliary-AdenoCA,33,19,13,26,21,96,20.733633956751245,6405
+Breast-AdenoCa,108,23,17,18,12,96,20.697854836927572,6484
+Breast-AdenoCa,66,41,102,45,64,289,21.799593434103897,6130
+Stomach-AdenoCA,20,8,10,10,14,33,19.55041971835867,8180
+Stomach-AdenoCA,49,24,79,18,17,122,21.158206563901203,16493
+Breast-AdenoCa,3,2,21,1,0,14,19.54152046606262,1950
+Stomach-AdenoCA,15,32,10,4,3,26,19.86115946106094,4428
+Breast-AdenoCa,7,0,22,5,5,55,21.783345328672617,3086
+Biliary-AdenoCA,8,1,0,5,3,32,20.56873053682892,11909
+Breast-AdenoCa,36,29,25,28,31,212,21.8122016414186,3093
+Breast-AdenoCa,0,2,3,1,1,51,21.77496719637651,2155
+Stomach-AdenoCA,0,0,1,0,0,2,13.46363692639886,105
+Biliary-AdenoCA,42,13,36,24,27,178,21.635514467725855,14945
+Stomach-AdenoCA,140,197,103,58,52,708,21.792620943517715,15097
+Biliary-AdenoCA,49,42,4,39,32,319,21.730799993118456,13482
+Breast-AdenoCa,11,5,15,8,6,52,19.442887926124044,3159
+Breast-AdenoCa,6,2,8,4,3,41,21.82410751800486,4610
+Breast-AdenoCa,51,22,39,23,26,196,21.568553171437383,4353
+Breast-AdenoCa,5,3,4,6,7,26,19.68667414303566,1788
+Breast-AdenoCa,32,18,57,29,24,234,21.759951748256874,5519
+Breast-AdenoCa,14,12,40,9,10,84,19.91774335230712,2235
+Breast-AdenoCa,2,1,6,1,0,18,20.022583046865666,2189
+Breast-AdenoCa,58,41,42,36,53,299,20.1163998481891,2160
+Breast-AdenoCa,83,7,45,4,5,112,21.81830547362006,8605
+Breast-AdenoCa,43,235,32,17,13,247,21.162518537037098,7080
+Stomach-AdenoCA,117,66,21,21,21,241,21.68093187801002,12998
+Breast-AdenoCa,138,49,35,33,36,272,21.754024928380655,9982
+Biliary-AdenoCA,37,36,7,16,20,169,21.824848089901156,14605
+Breast-AdenoCa,24,7,25,13,14,65,20.389948414062978,1290
+Breast-AdenoCa,65,46,77,41,38,285,21.58904231995087,8732
+Breast-AdenoCa,9,8,30,6,8,48,20.06540693417955,2069
+Stomach-AdenoCA,44,25,19,15,12,81,20.71818048041164,9412
+Breast-AdenoCa,7,6,7,6,6,61,21.762254772423812,2594
+Breast-AdenoCa,58,57,94,53,54,405,20.755908993207935,3764
+Stomach-AdenoCA,53,13,0,4,6,53,20.450180067603487,18600
+Breast-AdenoCa,4,5,1,3,3,8,18.20540909029222,1871
+Stomach-AdenoCA,35,65,20,14,19,188,21.72832707257237,6860
+Breast-AdenoCa,38,35,36,18,16,194,21.810332662514096,9411
+Breast-AdenoCa,1,0,0,0,0,7,19.661018989982466,2050
+Breast-AdenoCa,47,36,50,40,40,235,21.769769332833615,7391
+Breast-AdenoCa,13,12,9,8,9,58,20.65059249045577,2581
+Breast-AdenoCa,1,2,1,1,0,21,20.32900050158598,2714
+Breast-AdenoCa,6,4,34,4,6,47,20.219756679114738,2247
+Breast-AdenoCa,104,94,45,15,8,178,21.82708457517008,24447
+Breast-AdenoCa,2,1,0,4,3,19,20.62046690208177,3043
+Breast-AdenoCa,43,38,58,45,33,214,21.784424989695776,9555
+Skin-Melanoma,67,51,177,85,80,578,21.574742542641633,13994
+Skin-Melanoma,44,33,88,21,34,278,20.661150044762863,5157
+Skin-Melanoma,68,58,144,53,54,180,21.816420416376957,4599
+Skin-Melanoma,43,37,24,21,17,213,21.817674198817258,9429
+Skin-Melanoma,95,67,105,44,40,363,21.802406144108996,4061
+Skin-Melanoma,21,4,8,4,7,128,21.66074421418332,2269
+Skin-Melanoma,104,96,151,80,77,605,21.780179996706153,6074
+Skin-Melanoma,23,71,62,24,21,268,21.802889957316548,20202
+Skin-Melanoma,30,12,14,4,3,34,21.020476237111648,377354
+Skin-Melanoma,13,3,5,2,3,16,20.209710624573997,124057
+Skin-Melanoma,21,7,3,8,10,33,20.854651395164186,51034
+Skin-Melanoma,33,25,15,15,18,131,21.81758258497564,112868
+Skin-Melanoma,10,2,2,1,2,17,20.74112906521563,209356
+Skin-Melanoma,96,42,198,54,54,627,21.696503869288765,5439
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+Skin-Melanoma,3,6,8,3,1,22,19.852329693451455,52700
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+Skin-Melanoma,36,10,2,5,4,30,20.352178927749584,89530
+Skin-Melanoma,14,4,15,3,2,30,20.717754196724634,2908
+Skin-Melanoma,36,101,36,23,28,228,21.72748903024832,14690
+Skin-Melanoma,49,40,80,24,20,252,21.798671145359073,6096
+Skin-Melanoma,29,33,11,13,15,194,21.835262547939546,26100
+Skin-Melanoma,78,66,108,63,65,374,21.792668907701255,5238
+Skin-Melanoma,82,72,67,66,68,291,21.800586068027535,7188
+Skin-Melanoma,137,137,148,134,120,428,20.410016685102924,3636
+Skin-Melanoma,84,91,132,48,46,503,21.81597121377707,7872
+Skin-Melanoma,87,50,228,44,41,421,21.49893194143968,7865
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+Skin-Melanoma,33,21,9,11,9,110,21.792587483544825,77971
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+Skin-Melanoma,18,8,26,3,5,86,21.82586817809062,72451
+Skin-Melanoma,84,88,26,62,53,304,21.68022655703645,8020
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+Skin-Melanoma,107,66,100,94,74,457,21.830341270626775,327288
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+Lymph-BNHL,9,3,0,0,0,8,19.560810906560473,24835
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+Liver-HCC,7,6,1,2,2,18,20.473506653787457,24180
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+Lymph-BNHL,7,1,2,0,0,14,18.56908279201286,7721
+Lymph-BNHL,4,2,1,0,0,6,17.383495663177598,4394
+Lymph-BNHL,7,0,2,1,0,7,19.767932807202023,2250
+Lymph-CLL,4,1,0,0,0,8,19.288161247655808,2058
+Lymph-CLL,1,0,0,0,0,7,19.522717316396356,3922
+Lymph-CLL,1,0,1,2,2,5,18.91891321983869,2776
+Lymph-CLL,0,1,0,2,0,6,19.20707582017886,3504
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+Lymph-CLL,2,0,2,2,0,4,19.18673540457796,3449
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+Lymph-CLL,1,1,1,1,1,10,17.974918113139555,2671
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+Lymph-CLL,9,0,0,0,0,9,19.496691170720222,3567
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+Lymph-CLL,2,0,2,1,0,5,19.67341198908741,4482
+Lymph-CLL,6,1,2,0,0,7,19.228856605970964,2839
+Lymph-CLL,3,0,0,0,0,3,13.44762443149,3992
+Lymph-CLL,4,0,0,0,0,2,13.139729706000159,2689
+Lymph-CLL,5,0,3,1,1,11,16.100524986977838,2342
+Lymph-CLL,5,0,0,0,1,2,17.947882156447193,1920
+Lymph-CLL,2,0,2,1,1,10,19.216164159138927,2275
+Lymph-CLL,3,0,3,1,2,9,19.37671678597012,1508
+Lymph-CLL,1,1,0,2,1,7,18.477528595684007,2104
+Lymph-CLL,5,0,0,0,0,4,19.18523237580177,2465
+Lymph-CLL,5,0,2,0,0,4,17.488205115396028,2375
+Lymph-CLL,5,0,0,0,0,5,19.671953977629357,3123
+Lymph-CLL,5,1,0,0,0,5,15.123902565052031,3545
+Lymph-CLL,5,0,0,0,0,7,19.385351826510067,2698
+Lymph-CLL,6,0,1,0,1,16,19.104749257849505,2289
+Lymph-CLL,1,0,0,0,0,6,19.193450383893904,2502
+Lymph-CLL,3,0,0,0,0,3,17.08683643192126,2159
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+Lymph-CLL,3,0,1,0,0,9,19.376272758810888,1792
+Lymph-CLL,5,0,1,0,0,6,19.198109852442563,2861
+Lymph-CLL,2,2,1,0,0,7,16.682149461998723,2017
+Lymph-CLL,5,0,2,0,0,4,19.1866369691391,1953
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+Lymph-CLL,1,0,0,0,0,7,19.42599547346912,1886
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+Lymph-CLL,2,0,0,0,0,4,19.669180262561923,1133
+Lymph-CLL,4,2,0,1,1,10,19.41177091200674,4539
+Lymph-CLL,6,0,0,0,1,4,19.18635190960636,3326
+Lymph-CLL,1,0,0,0,1,3,19.200207990183547,1491
+Lymph-CLL,5,2,9,0,1,8,19.533939011411757,2736
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+Lymph-CLL,1,0,2,0,0,9,19.903589701936433,3840
+Lymph-CLL,6,0,0,0,0,6,18.721243579541426,1569
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+Lymph-CLL,3,0,0,0,0,10,19.007415828359697,2687
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+Lymph-CLL,1,0,0,0,0,3,18.71586721781517,2165
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+Lymph-CLL,2,0,1,0,0,8,19.205165921086685,1749
+Lymph-CLL,5,0,0,0,3,7,18.696457465619286,3105
+Lymph-CLL,0,1,2,0,0,13,19.923224730099705,2061
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+Lymph-CLL,2,0,2,0,0,11,19.47932367450247,1927
+Lymph-CLL,3,0,0,0,0,7,19.68290560437349,1490
+Lymph-CLL,1,1,0,0,0,4,19.186643635627714,2323
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+Lymph-CLL,5,0,1,0,1,9,19.6196623841157,2423
+Lymph-CLL,1,0,0,0,0,5,19.207655341931254,2712
+Lymph-CLL,3,0,3,1,1,9,19.935449972179835,3955
+Lymph-CLL,3,0,0,1,1,5,19.361784069511554,2024
+Lymph-CLL,2,0,0,0,1,5,14.239820972538125,2364
+Lymph-CLL,1,0,0,2,1,2,19.18449196814622,2689
+Lymph-CLL,4,0,0,0,0,7,19.689115010821936,2048
+Lymph-CLL,4,0,0,1,2,7,19.191279942321888,3678
+Lymph-CLL,4,0,3,2,1,9,20.00924980275295,3218
+Lymph-CLL,2,0,1,0,0,4,19.258802466350325,1340
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+Lymph-CLL,1,0,0,0,1,7,19.457916951028853,1102