Commit
·
1a0d6b8
1
Parent(s):
33779d3
fix parse_brat_file import (#2)
Browse files- fix parse_brat_file import (157597131f4739a68fa1ed1f2d34af034888cf97)
an_em.py
CHANGED
@@ -29,6 +29,8 @@ import datasets
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from .bigbiohub import kb_features
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from .bigbiohub import BigBioConfig
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from .bigbiohub import Tasks
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_LANGUAGES = ['English']
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_PUBMED = True
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@@ -205,7 +207,7 @@ class AnEMDataset(datasets.GeneratorBasedBuilder):
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# Use brat text files and consider files in the provided split list
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if (file.suffix != ".txt") or (file.stem not in split_list):
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continue
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-
brat_parsed =
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source_example = self._brat_to_source(file, brat_parsed)
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yield source_example["document_id"], source_example
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@@ -216,7 +218,7 @@ class AnEMDataset(datasets.GeneratorBasedBuilder):
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# Use brat text files and consider files in the provided split list
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if (file.suffix != ".txt") or (file.stem not in split_list):
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continue
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-
brat_parsed =
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bigbio_kb_example = parse.brat_parse_to_bigbio_kb(brat_parsed)
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bigbio_kb_example["id"] = bigbio_kb_example["document_id"]
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from .bigbiohub import kb_features
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from .bigbiohub import BigBioConfig
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from .bigbiohub import Tasks
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+
from .bigbiohub import parse_brat_file
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+
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_LANGUAGES = ['English']
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_PUBMED = True
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# Use brat text files and consider files in the provided split list
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if (file.suffix != ".txt") or (file.stem not in split_list):
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continue
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brat_parsed = parse_brat_file(file)
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source_example = self._brat_to_source(file, brat_parsed)
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yield source_example["document_id"], source_example
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# Use brat text files and consider files in the provided split list
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if (file.suffix != ".txt") or (file.stem not in split_list):
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continue
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+
brat_parsed = parse_brat_file(file)
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bigbio_kb_example = parse.brat_parse_to_bigbio_kb(brat_parsed)
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bigbio_kb_example["id"] = bigbio_kb_example["document_id"]
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