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hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/pegasus/modeling_flax_pegasus.py | # coding=utf-8
# Copyright 2021, Google and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Flax PEGASUS model."""
import math
import random
from functools import partial
from typing import Callable, Optional, Tuple
import flax.linen as nn
import jax
import jax.numpy as jnp
import numpy as np
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.linen import combine_masks, make_causal_mask
from flax.linen.attention import dot_product_attention_weights
from flax.traverse_util import flatten_dict, unflatten_dict
from jax import lax
from jax.random import PRNGKey
from ...modeling_flax_outputs import (
FlaxBaseModelOutput,
FlaxBaseModelOutputWithPastAndCrossAttentions,
FlaxCausalLMOutputWithCrossAttentions,
FlaxSeq2SeqLMOutput,
FlaxSeq2SeqModelOutput,
)
from ...modeling_flax_utils import (
ACT2FN,
FlaxPreTrainedModel,
add_start_docstrings_to_model_forward,
append_call_sample_docstring,
append_replace_return_docstrings,
overwrite_call_docstring,
)
from ...utils import add_start_docstrings, logging, replace_return_docstrings
from .configuration_pegasus import PegasusConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "google/pegasus-large"
_CONFIG_FOR_DOC = "PegasusConfig"
PEGASUS_START_DOCSTRING = r"""
This model inherits from [`FlaxPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a Flax Linen
[flax.nn.Module](https://flax.readthedocs.io/en/latest/_autosummary/flax.nn.module.html) subclass. Use it as a
regular Flax Module and refer to the Flax documentation for all matter related to general usage and behavior.
Finally, this model supports inherent JAX features such as:
- [Just-In-Time (JIT) compilation](https://jax.readthedocs.io/en/latest/jax.html#just-in-time-compilation-jit)
- [Automatic Differentiation](https://jax.readthedocs.io/en/latest/jax.html#automatic-differentiation)
- [Vectorization](https://jax.readthedocs.io/en/latest/jax.html#vectorization-vmap)
- [Parallelization](https://jax.readthedocs.io/en/latest/jax.html#parallelization-pmap)
Parameters:
config ([`PegasusConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~FlaxPreTrainedModel.from_pretrained`] method to load the model weights.
dtype (`jax.numpy.dtype`, *optional*, defaults to `jax.numpy.float32`):
The data type of the computation. Can be one of `jax.numpy.float32`, `jax.numpy.float16` (on GPUs) and
`jax.numpy.bfloat16` (on TPUs).
This can be used to enable mixed-precision training or half-precision inference on GPUs or TPUs. If
specified all the computation will be performed with the given `dtype`.
**Note that this only specifies the dtype of the computation and does not influence the dtype of model
parameters.**
If you wish to change the dtype of the model parameters, see [`~FlaxPreTrainedModel.to_fp16`] and
[`~FlaxPreTrainedModel.to_bf16`].
"""
PEGASUS_INPUTS_DOCSTRING = r"""
Args:
input_ids (`jnp.ndarray` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`jnp.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
decoder_input_ids (`jnp.ndarray` of shape `(batch_size, target_sequence_length)`, *optional*):
Indices of decoder input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are decoder input IDs?](../glossary#decoder-input-ids)
decoder_attention_mask (`jnp.ndarray` of shape `(batch_size, target_sequence_length)`, *optional*):
Default behavior: generate a tensor that ignores pad tokens in `decoder_input_ids`. Causal mask will also
be used by default.
If you want to change padding behavior, you should modify to your needs. See diagram 1 in [the
paper](https://arxiv.org/abs/1910.13461) for more information on the default strategy.
position_ids (`numpy.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
decoder_position_ids (`numpy.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each decoder input sequence tokens in the position embeddings. Selected in the
range `[0, config.max_position_embeddings - 1]`.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
PEGASUS_ENCODE_INPUTS_DOCSTRING = r"""
Args:
input_ids (`jnp.ndarray` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`jnp.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`numpy.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
PEGASUS_DECODE_INPUTS_DOCSTRING = r"""
Args:
decoder_input_ids (`jnp.ndarray` of shape `(batch_size, target_sequence_length)`):
Indices of decoder input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are decoder input IDs?](../glossary#decoder-input-ids)
encoder_outputs (`tuple(tuple(jnp.ndarray)`):
Tuple consists of (`last_hidden_state`, *optional*: `hidden_states`, *optional*: `attentions`)
`last_hidden_state` of shape `(batch_size, sequence_length, hidden_size)`, *optional*) is a sequence of
hidden-states at the output of the last layer of the encoder. Used in the cross-attention of the decoder.
encoder_attention_mask (`jnp.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
decoder_attention_mask (`jnp.ndarray` of shape `(batch_size, target_sequence_length)`, *optional*):
Default behavior: generate a tensor that ignores pad tokens in `decoder_input_ids`. Causal mask will also
be used by default.
If you want to change padding behavior, you should modify to your needs. See diagram 1 in [the
paper](https://arxiv.org/abs/1910.13461) for more information on the default strategy.
decoder_position_ids (`numpy.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each decoder input sequence tokens in the position embeddings. Selected in the
range `[0, config.max_position_embeddings - 1]`.
past_key_values (`Dict[str, np.ndarray]`, *optional*, returned by `init_cache` or when passing previous `past_key_values`):
Dictionary of pre-computed hidden-states (key and values in the attention blocks) that can be used for fast
auto-regressive decoding. Pre-computed key and value hidden-states are of shape *[batch_size, max_length]*.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
# Copied from transformers.models.bart.modeling_flax_bart.shift_tokens_right
def shift_tokens_right(input_ids: jnp.ndarray, pad_token_id: int, decoder_start_token_id: int) -> jnp.ndarray:
"""
Shift input ids one token to the right.
"""
shifted_input_ids = jnp.zeros_like(input_ids)
shifted_input_ids = shifted_input_ids.at[:, 1:].set(input_ids[:, :-1])
shifted_input_ids = shifted_input_ids.at[:, 0].set(decoder_start_token_id)
shifted_input_ids = jnp.where(shifted_input_ids == -100, pad_token_id, shifted_input_ids)
return shifted_input_ids
# Copied from transformers.models.marian.modeling_flax_marian.create_sinusoidal_positions
def create_sinusoidal_positions(n_pos, dim):
position_enc = np.array([[pos / np.power(10000, 2 * (j // 2) / dim) for j in range(dim)] for pos in range(n_pos)])
sentinel = dim // 2 + dim % 2
out = np.zeros_like(position_enc)
out[:, 0:sentinel] = np.sin(position_enc[:, 0::2])
out[:, sentinel:] = np.cos(position_enc[:, 1::2])
return jnp.array(out)
# Copied from transformers.models.bart.modeling_flax_bart.FlaxBartAttention with Bart->Pegasus
class FlaxPegasusAttention(nn.Module):
config: PegasusConfig
embed_dim: int
num_heads: int
dropout: float = 0.0
causal: bool = False
bias: bool = True
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self) -> None:
self.head_dim = self.embed_dim // self.num_heads
if self.head_dim * self.num_heads != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_heads (got `embed_dim`: {self.embed_dim}"
f" and `num_heads`: {self.num_heads})."
)
dense = partial(
nn.Dense,
self.embed_dim,
use_bias=self.bias,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(self.config.init_std),
)
self.q_proj, self.k_proj, self.v_proj = dense(), dense(), dense()
self.out_proj = dense()
self.dropout_layer = nn.Dropout(rate=self.dropout)
if self.causal:
self.causal_mask = make_causal_mask(
jnp.ones((1, self.config.max_position_embeddings), dtype="bool"), dtype="bool"
)
def _split_heads(self, hidden_states):
return hidden_states.reshape(hidden_states.shape[:2] + (self.num_heads, self.head_dim))
def _merge_heads(self, hidden_states):
return hidden_states.reshape(hidden_states.shape[:2] + (self.embed_dim,))
@nn.compact
def _concatenate_to_cache(self, key, value, query, attention_mask):
"""
This function takes projected key, value states from a single input token and concatenates the states to cached
states from previous steps. This function is slighly adapted from the official Flax repository:
https://github.com/google/flax/blob/491ce18759622506588784b4fca0e4bf05f8c8cd/flax/linen/attention.py#L252
"""
# detect if we're initializing by absence of existing cache data.
is_initialized = self.has_variable("cache", "cached_key")
cached_key = self.variable("cache", "cached_key", jnp.zeros, key.shape, key.dtype)
cached_value = self.variable("cache", "cached_value", jnp.zeros, value.shape, value.dtype)
cache_index = self.variable("cache", "cache_index", lambda: jnp.array(0, dtype=jnp.int32))
if is_initialized:
*batch_dims, max_length, num_heads, depth_per_head = cached_key.value.shape
# update key, value caches with our new 1d spatial slices
cur_index = cache_index.value
indices = (0,) * len(batch_dims) + (cur_index, 0, 0)
key = lax.dynamic_update_slice(cached_key.value, key, indices)
value = lax.dynamic_update_slice(cached_value.value, value, indices)
cached_key.value = key
cached_value.value = value
num_updated_cache_vectors = query.shape[1]
cache_index.value = cache_index.value + num_updated_cache_vectors
# causal mask for cached decoder self-attention: our single query position should only attend to those key positions that have already been generated and cached, not the remaining zero elements.
pad_mask = jnp.broadcast_to(
jnp.arange(max_length) < cur_index + num_updated_cache_vectors,
tuple(batch_dims) + (1, num_updated_cache_vectors, max_length),
)
attention_mask = combine_masks(pad_mask, attention_mask)
return key, value, attention_mask
def __call__(
self,
hidden_states: jnp.ndarray,
key_value_states: Optional[jnp.ndarray] = None,
attention_mask: Optional[jnp.ndarray] = None,
init_cache: bool = False,
deterministic: bool = True,
) -> Tuple[jnp.ndarray]:
"""Input shape: Batch x Time x Channel"""
# if key_value_states are provided this layer is used as a cross-attention layer
# for the decoder
is_cross_attention = key_value_states is not None
batch_size = hidden_states.shape[0]
# get query proj
query_states = self.q_proj(hidden_states)
# get key, value proj
if is_cross_attention:
# cross_attentions
key_states = self.k_proj(key_value_states)
value_states = self.v_proj(key_value_states)
else:
# self_attention
key_states = self.k_proj(hidden_states)
value_states = self.v_proj(hidden_states)
query_states = self._split_heads(query_states)
key_states = self._split_heads(key_states)
value_states = self._split_heads(value_states)
# handle cache prepare causal attention mask
if self.causal:
query_length, key_length = query_states.shape[1], key_states.shape[1]
if self.has_variable("cache", "cached_key"):
mask_shift = self.variables["cache"]["cache_index"]
max_decoder_length = self.variables["cache"]["cached_key"].shape[1]
causal_mask = lax.dynamic_slice(
self.causal_mask, (0, 0, mask_shift, 0), (1, 1, query_length, max_decoder_length)
)
else:
causal_mask = self.causal_mask[:, :, :query_length, :key_length]
causal_mask = jnp.broadcast_to(causal_mask, (batch_size,) + causal_mask.shape[1:])
# combine masks if needed
if attention_mask is not None and self.causal:
attention_mask = jnp.broadcast_to(jnp.expand_dims(attention_mask, axis=(-3, -2)), causal_mask.shape)
attention_mask = combine_masks(attention_mask, causal_mask)
elif self.causal:
attention_mask = causal_mask
elif attention_mask is not None:
attention_mask = jnp.expand_dims(attention_mask, axis=(-3, -2))
# During fast autoregressive decoding, we feed one position at a time,
# and cache the keys and values step by step.
if self.causal and (self.has_variable("cache", "cached_key") or init_cache):
key_states, value_states, attention_mask = self._concatenate_to_cache(
key_states, value_states, query_states, attention_mask
)
# Convert the boolean attention mask to an attention bias.
if attention_mask is not None:
# attention mask in the form of attention bias
attention_bias = lax.select(
attention_mask > 0,
jnp.full(attention_mask.shape, 0.0).astype(self.dtype),
jnp.full(attention_mask.shape, jnp.finfo(self.dtype).min).astype(self.dtype),
)
else:
attention_bias = None
dropout_rng = None
if not deterministic and self.dropout > 0.0:
dropout_rng = self.make_rng("dropout")
attn_weights = dot_product_attention_weights(
query_states,
key_states,
bias=attention_bias,
dropout_rng=dropout_rng,
dropout_rate=self.dropout,
broadcast_dropout=True,
deterministic=deterministic,
dtype=self.dtype,
precision=None,
)
attn_output = jnp.einsum("...hqk,...khd->...qhd", attn_weights, value_states)
attn_output = self._merge_heads(attn_output)
attn_output = self.out_proj(attn_output)
return attn_output, attn_weights
# Copied from transformers.models.mbart.modeling_flax_mbart.FlaxMBartEncoderLayer with MBart->Pegasus
class FlaxPegasusEncoderLayer(nn.Module):
config: PegasusConfig
dtype: jnp.dtype = jnp.float32
def setup(self) -> None:
self.embed_dim = self.config.d_model
self.self_attn = FlaxPegasusAttention(
config=self.config,
embed_dim=self.embed_dim,
num_heads=self.config.encoder_attention_heads,
dropout=self.config.attention_dropout,
dtype=self.dtype,
)
self.self_attn_layer_norm = nn.LayerNorm(dtype=self.dtype, epsilon=1e-05)
self.dropout_layer = nn.Dropout(rate=self.config.dropout)
self.activation_fn = ACT2FN[self.config.activation_function]
self.activation_dropout_layer = nn.Dropout(rate=self.config.activation_dropout)
self.fc1 = nn.Dense(
self.config.encoder_ffn_dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(self.config.init_std),
)
self.fc2 = nn.Dense(
self.embed_dim, dtype=self.dtype, kernel_init=jax.nn.initializers.normal(self.config.init_std)
)
self.final_layer_norm = nn.LayerNorm(dtype=self.dtype, epsilon=1e-05)
def __call__(
self,
hidden_states: jnp.ndarray,
attention_mask: jnp.ndarray,
output_attentions: bool = True,
deterministic: bool = True,
) -> Tuple[jnp.ndarray]:
residual = hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
hidden_states, attn_weights = self.self_attn(hidden_states=hidden_states, attention_mask=attention_mask)
hidden_states = self.dropout_layer(hidden_states, deterministic=deterministic)
hidden_states = residual + hidden_states
residual = hidden_states
hidden_states = self.final_layer_norm(hidden_states)
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = self.activation_dropout_layer(hidden_states, deterministic=deterministic)
hidden_states = self.fc2(hidden_states)
hidden_states = self.dropout_layer(hidden_states, deterministic=deterministic)
hidden_states = residual + hidden_states
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_weights,)
return outputs
# Copied from transformers.models.bart.modeling_flax_bart.FlaxBartEncoderLayerCollection with Bart->Pegasus
class FlaxPegasusEncoderLayerCollection(nn.Module):
config: PegasusConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.layers = [
FlaxPegasusEncoderLayer(self.config, name=str(i), dtype=self.dtype)
for i in range(self.config.encoder_layers)
]
self.layerdrop = self.config.encoder_layerdrop
def __call__(
self,
hidden_states,
attention_mask,
deterministic: bool = True,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
all_attentions = () if output_attentions else None
all_hidden_states = () if output_hidden_states else None
for encoder_layer in self.layers:
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
dropout_probability = random.uniform(0, 1)
if not deterministic and (dropout_probability < self.layerdrop): # skip the layer
layer_outputs = (None, None)
else:
layer_outputs = encoder_layer(
hidden_states,
attention_mask,
output_attentions,
deterministic,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states += (hidden_states,)
outputs = (hidden_states, all_hidden_states, all_attentions)
if not return_dict:
return tuple(v for v in outputs if v is not None)
return FlaxBaseModelOutput(
last_hidden_state=hidden_states, hidden_states=all_hidden_states, attentions=all_attentions
)
# Copied from transformers.models.mbart.modeling_flax_mbart.FlaxMBartDecoderLayer with MBart->Pegasus
class FlaxPegasusDecoderLayer(nn.Module):
config: PegasusConfig
dtype: jnp.dtype = jnp.float32
def setup(self) -> None:
self.embed_dim = self.config.d_model
self.self_attn = FlaxPegasusAttention(
config=self.config,
embed_dim=self.embed_dim,
num_heads=self.config.decoder_attention_heads,
dropout=self.config.attention_dropout,
causal=True,
dtype=self.dtype,
)
self.dropout_layer = nn.Dropout(rate=self.config.dropout)
self.activation_fn = ACT2FN[self.config.activation_function]
self.activation_dropout_layer = nn.Dropout(rate=self.config.activation_dropout)
self.self_attn_layer_norm = nn.LayerNorm(dtype=self.dtype, epsilon=1e-05)
self.encoder_attn = FlaxPegasusAttention(
config=self.config,
embed_dim=self.embed_dim,
num_heads=self.config.decoder_attention_heads,
dropout=self.config.attention_dropout,
dtype=self.dtype,
)
self.encoder_attn_layer_norm = nn.LayerNorm(dtype=self.dtype, epsilon=1e-05)
self.fc1 = nn.Dense(
self.config.decoder_ffn_dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(self.config.init_std),
)
self.fc2 = nn.Dense(
self.embed_dim, dtype=self.dtype, kernel_init=jax.nn.initializers.normal(self.config.init_std)
)
self.final_layer_norm = nn.LayerNorm(dtype=self.dtype, epsilon=1e-05)
def __call__(
self,
hidden_states: jnp.ndarray,
attention_mask: jnp.ndarray,
encoder_hidden_states: Optional[jnp.ndarray] = None,
encoder_attention_mask: Optional[jnp.ndarray] = None,
init_cache: bool = False,
output_attentions: bool = True,
deterministic: bool = True,
) -> Tuple[jnp.ndarray]:
residual = hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
# Self Attention
hidden_states, self_attn_weights = self.self_attn(
hidden_states=hidden_states, attention_mask=attention_mask, init_cache=init_cache
)
hidden_states = self.dropout_layer(hidden_states, deterministic=deterministic)
hidden_states = residual + hidden_states
# Cross-Attention Block
cross_attn_weights = None
if encoder_hidden_states is not None:
residual = hidden_states
hidden_states = self.encoder_attn_layer_norm(hidden_states)
hidden_states, cross_attn_weights = self.encoder_attn(
hidden_states=hidden_states,
key_value_states=encoder_hidden_states,
attention_mask=encoder_attention_mask,
)
hidden_states = self.dropout_layer(hidden_states, deterministic=deterministic)
hidden_states = residual + hidden_states
# Fully Connected
residual = hidden_states
hidden_states = self.final_layer_norm(hidden_states)
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = self.activation_dropout_layer(hidden_states, deterministic=deterministic)
hidden_states = self.fc2(hidden_states)
hidden_states = self.dropout_layer(hidden_states, deterministic=deterministic)
hidden_states = residual + hidden_states
outputs = (hidden_states,)
if output_attentions:
outputs += (self_attn_weights, cross_attn_weights)
return outputs
# Copied from transformers.models.bart.modeling_flax_bart.FlaxBartDecoderLayerCollection with Bart->Pegasus
class FlaxPegasusDecoderLayerCollection(nn.Module):
config: PegasusConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.layers = [
FlaxPegasusDecoderLayer(self.config, name=str(i), dtype=self.dtype)
for i in range(self.config.decoder_layers)
]
self.layerdrop = self.config.decoder_layerdrop
def __call__(
self,
hidden_states,
attention_mask,
encoder_hidden_states: Optional[jnp.ndarray] = None,
encoder_attention_mask: Optional[jnp.ndarray] = None,
deterministic: bool = True,
init_cache: bool = False,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
# decoder layers
all_hidden_states = () if output_hidden_states else None
all_self_attns = () if output_attentions else None
all_cross_attentions = () if (output_attentions and encoder_hidden_states is not None) else None
for decoder_layer in self.layers:
if output_hidden_states:
all_hidden_states += (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
dropout_probability = random.uniform(0, 1)
if not deterministic and (dropout_probability < self.layerdrop):
layer_outputs = (None, None, None)
else:
layer_outputs = decoder_layer(
hidden_states,
attention_mask=attention_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
init_cache=init_cache,
output_attentions=output_attentions,
deterministic=deterministic,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attns += (layer_outputs[1],)
if encoder_hidden_states is not None:
all_cross_attentions += (layer_outputs[2],)
# add hidden states from the last decoder layer
if output_hidden_states:
all_hidden_states += (hidden_states,)
outputs = [hidden_states, all_hidden_states, all_self_attns, all_cross_attentions]
if not return_dict:
return tuple(v for v in outputs if v is not None)
return FlaxBaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attns,
cross_attentions=all_cross_attentions,
)
class FlaxPegasusEncoder(nn.Module):
config: PegasusConfig
embed_tokens: nn.Embed
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.dropout_layer = nn.Dropout(rate=self.config.dropout)
embed_dim = self.config.d_model
self.padding_idx = self.config.pad_token_id
self.max_source_positions = self.config.max_position_embeddings
self.embed_scale = math.sqrt(embed_dim) if self.config.scale_embedding else 1.0
self.embed_positions = create_sinusoidal_positions(self.config.max_position_embeddings, embed_dim)
self.layers = FlaxPegasusEncoderLayerCollection(self.config, self.dtype)
self.layer_norm = nn.LayerNorm(dtype=self.dtype, epsilon=1e-05)
def __call__(
self,
input_ids,
attention_mask,
position_ids,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
deterministic: bool = True,
):
input_shape = input_ids.shape
input_ids = input_ids.reshape(-1, input_shape[-1])
inputs_embeds = self.embed_tokens(input_ids) * self.embed_scale
# embed positions
embed_pos = jnp.take(self.embed_positions, position_ids, axis=0)
# explictly cast the positions here, since self.embed_positions are not registered as parameters
embed_pos = embed_pos.astype(inputs_embeds.dtype)
hidden_states = inputs_embeds + embed_pos
hidden_states = self.dropout_layer(hidden_states, deterministic=deterministic)
outputs = self.layers(
hidden_states,
attention_mask,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
last_hidden_state = outputs[0]
last_hidden_state = self.layer_norm(last_hidden_state)
# update the last element in `hidden_states` after applying `layernorm` above
hidden_states = None
if output_hidden_states:
hidden_states = outputs[1]
hidden_states = hidden_states[:-1] + (last_hidden_state,)
if not return_dict:
outputs = (last_hidden_state, hidden_states) + (outputs[2:] if output_hidden_states else outputs[1:])
return tuple(v for v in outputs if v is not None)
return FlaxBaseModelOutput(
last_hidden_state=last_hidden_state,
hidden_states=hidden_states,
attentions=outputs.attentions,
)
class FlaxPegasusDecoder(nn.Module):
config: PegasusConfig
embed_tokens: nn.Embed
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.dropout_layer = nn.Dropout(rate=self.config.dropout)
embed_dim = self.config.d_model
self.padding_idx = self.config.pad_token_id
self.max_target_positions = self.config.max_position_embeddings
self.embed_scale = math.sqrt(self.config.d_model) if self.config.scale_embedding else 1.0
self.embed_positions = create_sinusoidal_positions(self.config.max_position_embeddings, embed_dim)
self.layers = FlaxPegasusDecoderLayerCollection(self.config, self.dtype)
self.layer_norm = nn.LayerNorm(dtype=self.dtype, epsilon=1e-05)
def __call__(
self,
input_ids,
attention_mask,
position_ids,
encoder_hidden_states: Optional[jnp.ndarray] = None,
encoder_attention_mask: Optional[jnp.ndarray] = None,
init_cache: bool = False,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
deterministic: bool = True,
):
input_shape = input_ids.shape
input_ids = input_ids.reshape(-1, input_shape[-1])
inputs_embeds = self.embed_tokens(input_ids) * self.embed_scale
# embed positions
positions = jnp.take(self.embed_positions, position_ids, axis=0)
# explictly cast the positions here, since self.embed_positions are not registered as parameters
positions = positions.astype(inputs_embeds.dtype)
hidden_states = inputs_embeds + positions
hidden_states = self.dropout_layer(hidden_states, deterministic=deterministic)
outputs = self.layers(
hidden_states,
attention_mask,
encoder_hidden_states,
encoder_attention_mask,
deterministic=deterministic,
init_cache=init_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
last_hidden_state = outputs[0]
last_hidden_state = self.layer_norm(last_hidden_state)
# update the last element in `hidden_states` after applying `layernorm` above
hidden_states = None
if output_hidden_states:
hidden_states = outputs[1]
hidden_states = hidden_states[:-1] + (last_hidden_state,)
if not return_dict:
outputs = (last_hidden_state, hidden_states) + (outputs[2:] if output_hidden_states else outputs[1:])
return tuple(v for v in outputs if v is not None)
return FlaxBaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=last_hidden_state,
hidden_states=hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
# Copied from transformers.models.bart.modeling_flax_bart.FlaxBartModule with Bart->Pegasus
class FlaxPegasusModule(nn.Module):
config: PegasusConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.shared = nn.Embed(
self.config.vocab_size,
self.config.d_model,
embedding_init=jax.nn.initializers.normal(self.config.init_std),
dtype=self.dtype,
)
self.encoder = FlaxPegasusEncoder(self.config, dtype=self.dtype, embed_tokens=self.shared)
self.decoder = FlaxPegasusDecoder(self.config, dtype=self.dtype, embed_tokens=self.shared)
def _get_encoder_module(self):
return self.encoder
def _get_decoder_module(self):
return self.decoder
def __call__(
self,
input_ids,
attention_mask,
decoder_input_ids,
decoder_attention_mask,
position_ids,
decoder_position_ids,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
deterministic: bool = True,
):
encoder_outputs = self.encoder(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=deterministic,
)
decoder_outputs = self.decoder(
input_ids=decoder_input_ids,
attention_mask=decoder_attention_mask,
position_ids=decoder_position_ids,
encoder_hidden_states=encoder_outputs[0],
encoder_attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=deterministic,
)
if not return_dict:
return decoder_outputs + encoder_outputs
return FlaxSeq2SeqModelOutput(
last_hidden_state=decoder_outputs.last_hidden_state,
decoder_hidden_states=decoder_outputs.hidden_states,
decoder_attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
encoder_last_hidden_state=encoder_outputs.last_hidden_state,
encoder_hidden_states=encoder_outputs.hidden_states,
encoder_attentions=encoder_outputs.attentions,
)
class FlaxPegasusPreTrainedModel(FlaxPreTrainedModel):
config_class = PegasusConfig
base_model_prefix: str = "model"
module_class: nn.Module = None
def __init__(
self,
config: PegasusConfig,
input_shape: Tuple[int] = (1, 1),
seed: int = 0,
dtype: jnp.dtype = jnp.float32,
_do_init: bool = True,
**kwargs,
):
module = self.module_class(config=config, dtype=dtype, **kwargs)
super().__init__(config, module, input_shape=input_shape, seed=seed, dtype=dtype, _do_init=_do_init)
def init_weights(self, rng: jax.random.PRNGKey, input_shape: Tuple, params: FrozenDict = None) -> FrozenDict:
# init input tensors
input_ids = jnp.zeros(input_shape, dtype="i4")
attention_mask = jnp.ones_like(input_ids)
decoder_input_ids = input_ids
decoder_attention_mask = jnp.ones_like(input_ids)
batch_size, sequence_length = input_ids.shape
position_ids = jnp.broadcast_to(jnp.arange(sequence_length)[None, :], (batch_size, sequence_length))
decoder_position_ids = jnp.broadcast_to(jnp.arange(sequence_length)[None, :], (batch_size, sequence_length))
params_rng, dropout_rng = jax.random.split(rng)
rngs = {"params": params_rng, "dropout": dropout_rng}
random_params = self.module.init(
rngs,
input_ids,
attention_mask,
decoder_input_ids,
decoder_attention_mask,
position_ids,
decoder_position_ids,
)["params"]
if params is not None:
random_params = flatten_dict(unfreeze(random_params))
params = flatten_dict(unfreeze(params))
for missing_key in self._missing_keys:
params[missing_key] = random_params[missing_key]
self._missing_keys = set()
return freeze(unflatten_dict(params))
else:
return random_params
def init_cache(self, batch_size, max_length, encoder_outputs):
r"""
Args:
batch_size (`int`):
batch_size used for fast auto-regressive decoding. Defines the batch size of the initialized cache.
max_length (`int`):
maximum possible length for auto-regressive decoding. Defines the sequence length of the initialized
cache.
encoder_outputs (`Union[FlaxBaseModelOutput, tuple(tuple(jnp.ndarray)]`):
`encoder_outputs` consists of (`last_hidden_state`, *optional*: `hidden_states`, *optional*:
`attentions`). `last_hidden_state` of shape `(batch_size, sequence_length, hidden_size)`, *optional*)
is a sequence of hidden-states at the output of the last layer of the encoder. Used in the
cross-attention of the decoder.
"""
# init input variables to retrieve cache
decoder_input_ids = jnp.ones((batch_size, max_length), dtype="i4")
decoder_attention_mask = jnp.ones_like(decoder_input_ids)
decoder_position_ids = jnp.broadcast_to(
jnp.arange(jnp.atleast_2d(decoder_input_ids).shape[-1]), decoder_input_ids.shape
)
def _decoder_forward(module, decoder_input_ids, decoder_attention_mask, decoder_position_ids, **kwargs):
decoder_module = module._get_decoder_module()
return decoder_module(
decoder_input_ids,
decoder_attention_mask,
decoder_position_ids,
**kwargs,
)
init_variables = self.module.init(
jax.random.PRNGKey(0),
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
decoder_position_ids=decoder_position_ids,
encoder_hidden_states=encoder_outputs[0],
init_cache=True,
method=_decoder_forward, # we only need to call the decoder to init the cache
)
return unfreeze(init_variables["cache"])
@add_start_docstrings(PEGASUS_ENCODE_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=FlaxBaseModelOutput, config_class=PegasusConfig)
def encode(
self,
input_ids: jnp.ndarray,
attention_mask: Optional[jnp.ndarray] = None,
position_ids: Optional[jnp.ndarray] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
train: bool = False,
params: dict = None,
dropout_rng: PRNGKey = None,
):
r"""
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, FlaxPegasusForConditionalGeneration
>>> model = FlaxPegasusForConditionalGeneration.from_pretrained("google/pegasus-large")
>>> tokenizer = AutoTokenizer.from_pretrained("google/pegasus-large")
>>> text = "My friends are cool but they eat too many carbs."
>>> inputs = tokenizer(text, max_length=1024, return_tensors="np")
>>> encoder_outputs = model.encode(**inputs)
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
if attention_mask is None:
attention_mask = jnp.ones_like(input_ids)
if position_ids is None:
batch_size, sequence_length = input_ids.shape
position_ids = jnp.broadcast_to(jnp.arange(sequence_length)[None, :], (batch_size, sequence_length))
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
def _encoder_forward(module, input_ids, attention_mask, position_ids, **kwargs):
encode_module = module._get_encoder_module()
return encode_module(input_ids, attention_mask, position_ids, **kwargs)
return self.module.apply(
{"params": params or self.params},
input_ids=jnp.array(input_ids, dtype="i4"),
attention_mask=jnp.array(attention_mask, dtype="i4"),
position_ids=jnp.array(position_ids, dtype="i4"),
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=not train,
rngs=rngs,
method=_encoder_forward,
)
@add_start_docstrings(PEGASUS_DECODE_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=FlaxBaseModelOutputWithPastAndCrossAttentions, config_class=PegasusConfig)
def decode(
self,
decoder_input_ids,
encoder_outputs,
encoder_attention_mask: Optional[jnp.ndarray] = None,
decoder_attention_mask: Optional[jnp.ndarray] = None,
decoder_position_ids: Optional[jnp.ndarray] = None,
past_key_values: dict = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
train: bool = False,
params: dict = None,
dropout_rng: PRNGKey = None,
):
r"""
Returns:
Example:
```python
>>> import jax.numpy as jnp
>>> from transformers import AutoTokenizer, FlaxPegasusForConditionalGeneration
>>> model = FlaxPegasusForConditionalGeneration.from_pretrained("google/pegasus-large")
>>> tokenizer = AutoTokenizer.from_pretrained("google/pegasus-large")
>>> text = "My friends are cool but they eat too many carbs."
>>> inputs = tokenizer(text, max_length=1024, return_tensors="np")
>>> encoder_outputs = model.encode(**inputs)
>>> decoder_start_token_id = model.config.decoder_start_token_id
>>> decoder_input_ids = jnp.ones((inputs.input_ids.shape[0], 1), dtype="i4") * decoder_start_token_id
>>> outputs = model.decode(decoder_input_ids, encoder_outputs)
>>> last_decoder_hidden_states = outputs.last_hidden_state
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
encoder_hidden_states = encoder_outputs[0]
if encoder_attention_mask is None:
batch_size, sequence_length = encoder_hidden_states.shape[:2]
encoder_attention_mask = jnp.ones((batch_size, sequence_length))
batch_size, sequence_length = decoder_input_ids.shape
if decoder_attention_mask is None:
decoder_attention_mask = jnp.ones((batch_size, sequence_length))
if decoder_position_ids is None:
if past_key_values is not None:
raise ValueError("Make sure to provide `decoder_position_ids` when passing `past_key_values`.")
decoder_position_ids = jnp.broadcast_to(
jnp.arange(sequence_length)[None, :], (batch_size, sequence_length)
)
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
inputs = {"params": params or self.params}
# if past_key_values are passed then cache is already initialized a private flag init_cache has to be
# passed down to ensure cache is used. It has to be made sure that cache is marked as mutable so that
# it can be changed by FlaxPegasusAttention module
if past_key_values:
inputs["cache"] = past_key_values
mutable = ["cache"]
else:
mutable = False
def _decoder_forward(module, decoder_input_ids, decoder_attention_mask, decoder_position_ids, **kwargs):
decoder_module = module._get_decoder_module()
return decoder_module(
decoder_input_ids,
decoder_attention_mask,
decoder_position_ids,
**kwargs,
)
outputs = self.module.apply(
inputs,
decoder_input_ids=jnp.array(decoder_input_ids, dtype="i4"),
decoder_attention_mask=jnp.array(decoder_attention_mask, dtype="i4"),
decoder_position_ids=jnp.array(decoder_position_ids, dtype="i4"),
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=jnp.array(encoder_attention_mask, dtype="i4"),
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=not train,
rngs=rngs,
mutable=mutable,
method=_decoder_forward,
)
# add updated cache to model output
if past_key_values is not None and return_dict:
outputs, past = outputs
outputs["past_key_values"] = unfreeze(past["cache"])
return outputs
elif past_key_values is not None and not return_dict:
outputs, past = outputs
outputs = outputs[:1] + (unfreeze(past["cache"]),) + outputs[1:]
return outputs
@add_start_docstrings_to_model_forward(PEGASUS_INPUTS_DOCSTRING)
def __call__(
self,
input_ids: jnp.ndarray,
attention_mask: Optional[jnp.ndarray] = None,
decoder_input_ids: Optional[jnp.ndarray] = None,
decoder_attention_mask: Optional[jnp.ndarray] = None,
position_ids: Optional[jnp.ndarray] = None,
decoder_position_ids: Optional[jnp.ndarray] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
train: bool = False,
params: dict = None,
dropout_rng: PRNGKey = None,
):
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
# prepare encoder inputs
if attention_mask is None:
attention_mask = jnp.ones_like(input_ids)
if position_ids is None:
batch_size, sequence_length = input_ids.shape
position_ids = jnp.broadcast_to(jnp.arange(sequence_length)[None, :], (batch_size, sequence_length))
# prepare decoder inputs
if decoder_input_ids is None:
decoder_input_ids = shift_tokens_right(
input_ids, self.config.pad_token_id, decoder_start_token_id=self.config.decoder_start_token_id
)
if decoder_attention_mask is None:
decoder_attention_mask = jnp.ones_like(decoder_input_ids)
if decoder_position_ids is None:
batch_size, sequence_length = decoder_input_ids.shape
decoder_position_ids = jnp.broadcast_to(
jnp.arange(sequence_length)[None, :], (batch_size, sequence_length)
)
# Handle any PRNG if needed
rngs = {"dropout": dropout_rng} if dropout_rng is not None else {}
return self.module.apply(
{"params": params or self.params},
input_ids=jnp.array(input_ids, dtype="i4"),
attention_mask=jnp.array(attention_mask, dtype="i4"),
position_ids=jnp.array(position_ids, dtype="i4"),
decoder_input_ids=jnp.array(decoder_input_ids, dtype="i4"),
decoder_attention_mask=jnp.array(decoder_attention_mask, dtype="i4"),
decoder_position_ids=jnp.array(decoder_position_ids, dtype="i4"),
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=not train,
rngs=rngs,
)
@add_start_docstrings(
"The bare Pegasus Model transformer outputting raw hidden-states without any specific head on top.",
PEGASUS_START_DOCSTRING,
)
class FlaxPegasusModel(FlaxPegasusPreTrainedModel):
config: PegasusConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
module_class = FlaxPegasusModule
append_call_sample_docstring(FlaxPegasusModel, _CHECKPOINT_FOR_DOC, FlaxSeq2SeqModelOutput, _CONFIG_FOR_DOC)
# Copied from transformers.models.bart.modeling_flax_bart.FlaxBartForConditionalGenerationModule with Bart->Pegasus
class FlaxPegasusForConditionalGenerationModule(nn.Module):
config: PegasusConfig
dtype: jnp.dtype = jnp.float32
bias_init: Callable[..., jnp.ndarray] = jax.nn.initializers.zeros
def setup(self):
self.model = FlaxPegasusModule(config=self.config, dtype=self.dtype)
self.lm_head = nn.Dense(
self.model.shared.num_embeddings,
use_bias=False,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(self.config.init_std),
)
self.final_logits_bias = self.param("final_logits_bias", self.bias_init, (1, self.model.shared.num_embeddings))
def _get_encoder_module(self):
return self.model.encoder
def _get_decoder_module(self):
return self.model.decoder
def __call__(
self,
input_ids,
attention_mask,
decoder_input_ids,
decoder_attention_mask,
position_ids,
decoder_position_ids,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
deterministic: bool = True,
):
outputs = self.model(
input_ids=input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
position_ids=position_ids,
decoder_position_ids=decoder_position_ids,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=deterministic,
)
hidden_states = outputs[0]
if self.config.tie_word_embeddings:
shared_embedding = self.model.variables["params"]["shared"]["embedding"]
lm_logits = self.lm_head.apply({"params": {"kernel": shared_embedding.T}}, hidden_states)
else:
lm_logits = self.lm_head(hidden_states)
lm_logits += jax.lax.stop_gradient(self.final_logits_bias.astype(self.dtype))
if not return_dict:
output = (lm_logits,) + outputs[1:]
return output
return FlaxSeq2SeqLMOutput(
logits=lm_logits,
decoder_hidden_states=outputs.decoder_hidden_states,
decoder_attentions=outputs.decoder_attentions,
cross_attentions=outputs.cross_attentions,
encoder_last_hidden_state=outputs.encoder_last_hidden_state,
encoder_hidden_states=outputs.encoder_hidden_states,
encoder_attentions=outputs.encoder_attentions,
)
@add_start_docstrings(
"The PEGASUS Model with a language modeling head. Can be used for summarization.", PEGASUS_START_DOCSTRING
)
class FlaxPegasusForConditionalGeneration(FlaxPegasusPreTrainedModel):
module_class = FlaxPegasusForConditionalGenerationModule
dtype: jnp.dtype = jnp.float32
@add_start_docstrings(PEGASUS_DECODE_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=FlaxCausalLMOutputWithCrossAttentions, config_class=PegasusConfig)
def decode(
self,
decoder_input_ids,
encoder_outputs,
encoder_attention_mask: Optional[jnp.ndarray] = None,
decoder_attention_mask: Optional[jnp.ndarray] = None,
decoder_position_ids: Optional[jnp.ndarray] = None,
past_key_values: dict = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
deterministic: bool = True,
params: dict = None,
dropout_rng: PRNGKey = None,
):
r"""
Returns:
Example:
```python
>>> import jax.numpy as jnp
>>> from transformers import AutoTokenizer, FlaxPegasusForConditionalGeneration
>>> model = FlaxPegasusForConditionalGeneration.from_pretrained("google/pegasus-large")
>>> tokenizer = AutoTokenizer.from_pretrained("google/pegasus-large")
>>> text = "My friends are cool but they eat too many carbs."
>>> inputs = tokenizer(text, max_length=1024, return_tensors="np")
>>> encoder_outputs = model.encode(**inputs)
>>> decoder_start_token_id = model.config.decoder_start_token_id
>>> decoder_input_ids = jnp.ones((inputs.input_ids.shape[0], 1), dtype="i4") * decoder_start_token_id
>>> outputs = model.decode(decoder_input_ids, encoder_outputs)
>>> logits = outputs.logits
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
encoder_hidden_states = encoder_outputs[0]
if encoder_attention_mask is None:
batch_size, sequence_length = encoder_hidden_states.shape[:2]
encoder_attention_mask = jnp.ones((batch_size, sequence_length))
batch_size, sequence_length = decoder_input_ids.shape
if decoder_attention_mask is None:
decoder_attention_mask = jnp.ones((batch_size, sequence_length))
if decoder_position_ids is None:
if past_key_values is not None:
raise ValueError("Make sure to provide `decoder_position_ids` when passing `past_key_values`.")
decoder_position_ids = jnp.broadcast_to(
jnp.arange(sequence_length)[None, :], (batch_size, sequence_length)
)
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
inputs = {"params": params or self.params}
# if past_key_values are passed then cache is already initialized a private flag init_cache has to be
# passed down to ensure cache is used. It has to be made sure that cache is marked as mutable so that
# it can be changed by FlaxPegasusAttention module
if past_key_values:
inputs["cache"] = past_key_values
mutable = ["cache"]
else:
mutable = False
def _decoder_forward(module, decoder_input_ids, decoder_attention_mask, decoder_position_ids, **kwargs):
decoder_module = module._get_decoder_module()
outputs = decoder_module(
decoder_input_ids,
decoder_attention_mask,
decoder_position_ids,
**kwargs,
)
hidden_states = outputs[0]
if self.config.tie_word_embeddings:
shared_embedding = module.model.variables["params"]["shared"]["embedding"]
lm_logits = module.lm_head.apply({"params": {"kernel": shared_embedding.T}}, hidden_states)
else:
lm_logits = module.lm_head(hidden_states)
lm_logits += module.final_logits_bias.astype(self.dtype)
return lm_logits, outputs
outputs = self.module.apply(
inputs,
decoder_input_ids=jnp.array(decoder_input_ids, dtype="i4"),
decoder_attention_mask=jnp.array(decoder_attention_mask, dtype="i4"),
decoder_position_ids=jnp.array(decoder_position_ids, dtype="i4"),
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=jnp.array(encoder_attention_mask, dtype="i4"),
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=deterministic,
rngs=rngs,
mutable=mutable,
method=_decoder_forward,
)
if past_key_values is None:
lm_logits, decoder_outputs = outputs
else:
(lm_logits, decoder_outputs), past = outputs
if return_dict:
outputs = FlaxCausalLMOutputWithCrossAttentions(
logits=lm_logits,
hidden_states=decoder_outputs.hidden_states,
attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
)
else:
outputs = (lm_logits,) + decoder_outputs[1:]
# add updated cache to model output
if past_key_values is not None and return_dict:
outputs["past_key_values"] = unfreeze(past["cache"])
return outputs
elif past_key_values is not None and not return_dict:
outputs = outputs[:1] + (unfreeze(past["cache"]),) + outputs[1:]
return outputs
def prepare_inputs_for_generation(
self,
decoder_input_ids,
max_length,
attention_mask: Optional[jax.Array] = None,
decoder_attention_mask: Optional[jax.Array] = None,
encoder_outputs=None,
**kwargs,
):
# initializing the cache
batch_size, seq_length = decoder_input_ids.shape
past_key_values = self.init_cache(batch_size, max_length, encoder_outputs)
# Note that usually one would have to put 0's in the attention_mask for x > input_ids.shape[-1] and x < cache_length.
# But since the decoder uses a causal mask, those positions are masked anyways.
# Thus we can create a single static attention_mask here, which is more efficient for compilation
extended_attention_mask = jnp.ones((batch_size, max_length), dtype="i4")
if decoder_attention_mask is not None:
position_ids = decoder_attention_mask.cumsum(axis=-1) - 1
extended_attention_mask = lax.dynamic_update_slice(extended_attention_mask, decoder_attention_mask, (0, 0))
else:
position_ids = jnp.broadcast_to(jnp.arange(seq_length, dtype="i4")[None, :], (batch_size, seq_length))
return {
"past_key_values": past_key_values,
"encoder_outputs": encoder_outputs,
"encoder_attention_mask": attention_mask,
"decoder_attention_mask": extended_attention_mask,
"decoder_position_ids": position_ids,
}
def update_inputs_for_generation(self, model_outputs, model_kwargs):
model_kwargs["past_key_values"] = model_outputs.past_key_values
model_kwargs["decoder_position_ids"] = model_kwargs["decoder_position_ids"][:, -1:] + 1
return model_kwargs
FLAX_PEGASUS_CONDITIONAL_GENERATION_DOCSTRING = """
Returns:
Summarization example:
```pyton
>>> from transformers import AutoTokenizer, FlaxPegasusForConditionalGeneration
>>> model = FlaxPegasusForConditionalGeneration.from_pretrained('google/pegasus-large')
>>> tokenizer = AutoTokenizer.from_pretrained('google/pegasus-large')
>>> ARTICLE_TO_SUMMARIZE = "My friends are cool but they eat too many carbs."
>>> inputs = tokenizer([ARTICLE_TO_SUMMARIZE], max_length=1024, return_tensors='np')
>>> # Generate Summary
>>> summary_ids = model.generate(inputs['input_ids']).sequences
>>> print(tokenizer.batch_decode(summary_ids, skip_special_tokens=True, clean_up_tokenization_spaces=False))
```
Mask filling example:
```python
>>> from transformers import AutoTokenizer, FlaxPegasusForConditionalGeneration
>>> tokenizer = AutoTokenizer.from_pretrained("google/pegasus-large")
>>> TXT = "My friends are <mask> but they eat too many carbs."
>>> model = FlaxPegasusForConditionalGeneration.from_pretrained("google/pegasus-large")
>>> input_ids = tokenizer([TXT], return_tensors="np")["input_ids"]
>>> logits = model(input_ids).logits
>>> masked_index = (input_ids[0] == tokenizer.mask_token_id).nonzero().item()
>>> probs = jax.nn.softmax(logits[0, masked_index], axis=0)
>>> values, predictions = jax.lax.top_k(probs)
>>> tokenizer.decode(predictions).split()
```
"""
overwrite_call_docstring(
FlaxPegasusForConditionalGeneration, PEGASUS_INPUTS_DOCSTRING + FLAX_PEGASUS_CONDITIONAL_GENERATION_DOCSTRING
)
append_replace_return_docstrings(
FlaxPegasusForConditionalGeneration, output_type=FlaxSeq2SeqLMOutput, config_class=_CONFIG_FOR_DOC
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/distilbert/modeling_tf_distilbert.py | # coding=utf-8
# Copyright 2019-present, the HuggingFace Inc. team, The Google AI Language Team and Facebook, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
TF 2.0 DistilBERT model
"""
from __future__ import annotations
import warnings
from typing import Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFMaskedLMOutput,
TFMultipleChoiceModelOutput,
TFQuestionAnsweringModelOutput,
TFSequenceClassifierOutput,
TFTokenClassifierOutput,
)
from ...modeling_tf_utils import (
TFMaskedLanguageModelingLoss,
TFModelInputType,
TFMultipleChoiceLoss,
TFPreTrainedModel,
TFQuestionAnsweringLoss,
TFSequenceClassificationLoss,
TFTokenClassificationLoss,
get_initializer,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import check_embeddings_within_bounds, shape_list, stable_softmax
from ...utils import (
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
)
from .configuration_distilbert import DistilBertConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "distilbert-base-uncased"
_CONFIG_FOR_DOC = "DistilBertConfig"
TF_DISTILBERT_PRETRAINED_MODEL_ARCHIVE_LIST = [
"distilbert-base-uncased",
"distilbert-base-uncased-distilled-squad",
"distilbert-base-cased",
"distilbert-base-cased-distilled-squad",
"distilbert-base-multilingual-cased",
"distilbert-base-uncased-finetuned-sst-2-english",
# See all DistilBERT models at https://huggingface.co/models?filter=distilbert
]
class TFEmbeddings(tf.keras.layers.Layer):
"""Construct the embeddings from word, position and token_type embeddings."""
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.config = config
self.dim = config.dim
self.initializer_range = config.initializer_range
self.max_position_embeddings = config.max_position_embeddings
self.LayerNorm = tf.keras.layers.LayerNormalization(epsilon=1e-12, name="LayerNorm")
self.dropout = tf.keras.layers.Dropout(rate=config.dropout)
def build(self, input_shape=None):
with tf.name_scope("word_embeddings"):
self.weight = self.add_weight(
name="weight",
shape=[self.config.vocab_size, self.dim],
initializer=get_initializer(initializer_range=self.initializer_range),
)
with tf.name_scope("position_embeddings"):
self.position_embeddings = self.add_weight(
name="embeddings",
shape=[self.max_position_embeddings, self.dim],
initializer=get_initializer(initializer_range=self.initializer_range),
)
if self.built:
return
self.built = True
if getattr(self, "LayerNorm", None) is not None:
with tf.name_scope(self.LayerNorm.name):
self.LayerNorm.build([None, None, self.config.dim])
def call(self, input_ids=None, position_ids=None, inputs_embeds=None, training=False):
"""
Applies embedding based on inputs tensor.
Returns:
final_embeddings (`tf.Tensor`): output embedding tensor.
"""
assert not (input_ids is None and inputs_embeds is None)
if input_ids is not None:
check_embeddings_within_bounds(input_ids, self.config.vocab_size)
inputs_embeds = tf.gather(params=self.weight, indices=input_ids)
input_shape = shape_list(inputs_embeds)[:-1]
if position_ids is None:
position_ids = tf.expand_dims(tf.range(start=0, limit=input_shape[-1]), axis=0)
position_embeds = tf.gather(params=self.position_embeddings, indices=position_ids)
final_embeddings = inputs_embeds + position_embeds
final_embeddings = self.LayerNorm(inputs=final_embeddings)
final_embeddings = self.dropout(inputs=final_embeddings, training=training)
return final_embeddings
class TFMultiHeadSelfAttention(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.n_heads = config.n_heads
self.dim = config.dim
self.dropout = tf.keras.layers.Dropout(config.attention_dropout)
self.output_attentions = config.output_attentions
assert self.dim % self.n_heads == 0, f"Hidden size {self.dim} not dividable by number of heads {self.n_heads}"
self.q_lin = tf.keras.layers.Dense(
config.dim, kernel_initializer=get_initializer(config.initializer_range), name="q_lin"
)
self.k_lin = tf.keras.layers.Dense(
config.dim, kernel_initializer=get_initializer(config.initializer_range), name="k_lin"
)
self.v_lin = tf.keras.layers.Dense(
config.dim, kernel_initializer=get_initializer(config.initializer_range), name="v_lin"
)
self.out_lin = tf.keras.layers.Dense(
config.dim, kernel_initializer=get_initializer(config.initializer_range), name="out_lin"
)
self.pruned_heads = set()
self.config = config
def prune_heads(self, heads):
raise NotImplementedError
def call(self, query, key, value, mask, head_mask, output_attentions, training=False):
"""
Parameters:
query: tf.Tensor(bs, seq_length, dim)
key: tf.Tensor(bs, seq_length, dim)
value: tf.Tensor(bs, seq_length, dim)
mask: tf.Tensor(bs, seq_length)
Returns:
weights: tf.Tensor(bs, n_heads, seq_length, seq_length) Attention weights context: tf.Tensor(bs,
seq_length, dim) Contextualized layer. Optional: only if `output_attentions=True`
"""
bs, q_length, dim = shape_list(query)
k_length = shape_list(key)[1]
# assert dim == self.dim, f'Dimensions do not match: {dim} input vs {self.dim} configured'
# assert key.size() == value.size()
dim_per_head = int(self.dim / self.n_heads)
dim_per_head = tf.cast(dim_per_head, dtype=tf.int32)
mask_reshape = [bs, 1, 1, k_length]
def shape(x):
"""separate heads"""
return tf.transpose(tf.reshape(x, (bs, -1, self.n_heads, dim_per_head)), perm=(0, 2, 1, 3))
def unshape(x):
"""group heads"""
return tf.reshape(tf.transpose(x, perm=(0, 2, 1, 3)), (bs, -1, self.n_heads * dim_per_head))
q = shape(self.q_lin(query)) # (bs, n_heads, q_length, dim_per_head)
k = shape(self.k_lin(key)) # (bs, n_heads, k_length, dim_per_head)
v = shape(self.v_lin(value)) # (bs, n_heads, k_length, dim_per_head)
q = tf.cast(q, dtype=tf.float32)
q = tf.multiply(q, tf.math.rsqrt(tf.cast(dim_per_head, dtype=tf.float32)))
k = tf.cast(k, dtype=q.dtype)
scores = tf.matmul(q, k, transpose_b=True) # (bs, n_heads, q_length, k_length)
mask = tf.reshape(mask, mask_reshape) # (bs, n_heads, qlen, klen)
# scores.masked_fill_(mask, -float('inf')) # (bs, n_heads, q_length, k_length)
mask = tf.cast(mask, dtype=scores.dtype)
scores = scores - 1e30 * (1.0 - mask)
weights = stable_softmax(scores, axis=-1) # (bs, n_heads, qlen, klen)
weights = self.dropout(weights, training=training) # (bs, n_heads, qlen, klen)
# Mask heads if we want to
if head_mask is not None:
weights = weights * head_mask
context = tf.matmul(weights, v) # (bs, n_heads, qlen, dim_per_head)
context = unshape(context) # (bs, q_length, dim)
context = self.out_lin(context) # (bs, q_length, dim)
if output_attentions:
return (context, weights)
else:
return (context,)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "q_lin", None) is not None:
with tf.name_scope(self.q_lin.name):
self.q_lin.build([None, None, self.config.dim])
if getattr(self, "k_lin", None) is not None:
with tf.name_scope(self.k_lin.name):
self.k_lin.build([None, None, self.config.dim])
if getattr(self, "v_lin", None) is not None:
with tf.name_scope(self.v_lin.name):
self.v_lin.build([None, None, self.config.dim])
if getattr(self, "out_lin", None) is not None:
with tf.name_scope(self.out_lin.name):
self.out_lin.build([None, None, self.config.dim])
class TFFFN(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.dropout = tf.keras.layers.Dropout(config.dropout)
self.lin1 = tf.keras.layers.Dense(
config.hidden_dim, kernel_initializer=get_initializer(config.initializer_range), name="lin1"
)
self.lin2 = tf.keras.layers.Dense(
config.dim, kernel_initializer=get_initializer(config.initializer_range), name="lin2"
)
self.activation = get_tf_activation(config.activation)
self.config = config
def call(self, input, training=False):
x = self.lin1(input)
x = self.activation(x)
x = self.lin2(x)
x = self.dropout(x, training=training)
return x
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "lin1", None) is not None:
with tf.name_scope(self.lin1.name):
self.lin1.build([None, None, self.config.dim])
if getattr(self, "lin2", None) is not None:
with tf.name_scope(self.lin2.name):
self.lin2.build([None, None, self.config.hidden_dim])
class TFTransformerBlock(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.n_heads = config.n_heads
self.dim = config.dim
self.hidden_dim = config.hidden_dim
self.dropout = tf.keras.layers.Dropout(config.dropout)
self.activation = config.activation
self.output_attentions = config.output_attentions
assert (
config.dim % config.n_heads == 0
), f"Hidden size {config.dim} not dividable by number of heads {config.n_heads}"
self.attention = TFMultiHeadSelfAttention(config, name="attention")
self.sa_layer_norm = tf.keras.layers.LayerNormalization(epsilon=1e-12, name="sa_layer_norm")
self.ffn = TFFFN(config, name="ffn")
self.output_layer_norm = tf.keras.layers.LayerNormalization(epsilon=1e-12, name="output_layer_norm")
self.config = config
def call(self, x, attn_mask, head_mask, output_attentions, training=False): # removed: src_enc=None, src_len=None
"""
Parameters:
x: tf.Tensor(bs, seq_length, dim)
attn_mask: tf.Tensor(bs, seq_length)
Outputs: sa_weights: tf.Tensor(bs, n_heads, seq_length, seq_length) The attention weights ffn_output:
tf.Tensor(bs, seq_length, dim) The output of the transformer block contextualization.
"""
# Self-Attention
sa_output = self.attention(x, x, x, attn_mask, head_mask, output_attentions, training=training)
if output_attentions:
sa_output, sa_weights = sa_output # (bs, seq_length, dim), (bs, n_heads, seq_length, seq_length)
else: # To handle these `output_attentions` or `output_hidden_states` cases returning tuples
# assert type(sa_output) == tuple
sa_output = sa_output[0]
sa_output = self.sa_layer_norm(sa_output + x) # (bs, seq_length, dim)
# Feed Forward Network
ffn_output = self.ffn(sa_output, training=training) # (bs, seq_length, dim)
ffn_output = self.output_layer_norm(ffn_output + sa_output) # (bs, seq_length, dim)
output = (ffn_output,)
if output_attentions:
output = (sa_weights,) + output
return output
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "attention", None) is not None:
with tf.name_scope(self.attention.name):
self.attention.build(None)
if getattr(self, "sa_layer_norm", None) is not None:
with tf.name_scope(self.sa_layer_norm.name):
self.sa_layer_norm.build([None, None, self.config.dim])
if getattr(self, "ffn", None) is not None:
with tf.name_scope(self.ffn.name):
self.ffn.build(None)
if getattr(self, "output_layer_norm", None) is not None:
with tf.name_scope(self.output_layer_norm.name):
self.output_layer_norm.build([None, None, self.config.dim])
class TFTransformer(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.n_layers = config.n_layers
self.output_hidden_states = config.output_hidden_states
self.output_attentions = config.output_attentions
self.layer = [TFTransformerBlock(config, name=f"layer_._{i}") for i in range(config.n_layers)]
def call(self, x, attn_mask, head_mask, output_attentions, output_hidden_states, return_dict, training=False):
# docstyle-ignore
"""
Parameters:
x: tf.Tensor(bs, seq_length, dim) Input sequence embedded.
attn_mask: tf.Tensor(bs, seq_length) Attention mask on the sequence.
Returns:
hidden_state: tf.Tensor(bs, seq_length, dim)
Sequence of hidden states in the last (top) layer
all_hidden_states: Tuple[tf.Tensor(bs, seq_length, dim)]
Tuple of length n_layers with the hidden states from each layer.
Optional: only if output_hidden_states=True
all_attentions: Tuple[tf.Tensor(bs, n_heads, seq_length, seq_length)]
Tuple of length n_layers with the attention weights from each layer
Optional: only if output_attentions=True
"""
all_hidden_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
hidden_state = x
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_state,)
layer_outputs = layer_module(hidden_state, attn_mask, head_mask[i], output_attentions, training=training)
hidden_state = layer_outputs[-1]
if output_attentions:
assert len(layer_outputs) == 2
attentions = layer_outputs[0]
all_attentions = all_attentions + (attentions,)
else:
assert len(layer_outputs) == 1, f"Incorrect number of outputs {len(layer_outputs)} instead of 1"
# Add last layer
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_state,)
if not return_dict:
return tuple(v for v in [hidden_state, all_hidden_states, all_attentions] if v is not None)
return TFBaseModelOutput(
last_hidden_state=hidden_state, hidden_states=all_hidden_states, attentions=all_attentions
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "layer", None) is not None:
for layer in self.layer:
with tf.name_scope(layer.name):
layer.build(None)
@keras_serializable
class TFDistilBertMainLayer(tf.keras.layers.Layer):
config_class = DistilBertConfig
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.config = config
self.num_hidden_layers = config.num_hidden_layers
self.output_attentions = config.output_attentions
self.output_hidden_states = config.output_hidden_states
self.return_dict = config.use_return_dict
self.embeddings = TFEmbeddings(config, name="embeddings") # Embeddings
self.transformer = TFTransformer(config, name="transformer") # Encoder
def get_input_embeddings(self):
return self.embeddings
def set_input_embeddings(self, value):
self.embeddings.weight = value
self.embeddings.vocab_size = value.shape[0]
def _prune_heads(self, heads_to_prune):
raise NotImplementedError
@unpack_inputs
def call(
self,
input_ids=None,
attention_mask=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
):
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = shape_list(input_ids)
elif inputs_embeds is not None:
input_shape = shape_list(inputs_embeds)[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if attention_mask is None:
attention_mask = tf.ones(input_shape) # (bs, seq_length)
attention_mask = tf.cast(attention_mask, dtype=tf.float32)
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
if head_mask is not None:
raise NotImplementedError
else:
head_mask = [None] * self.num_hidden_layers
embedding_output = self.embeddings(input_ids, inputs_embeds=inputs_embeds) # (bs, seq_length, dim)
tfmr_output = self.transformer(
embedding_output,
attention_mask,
head_mask,
output_attentions,
output_hidden_states,
return_dict,
training=training,
)
return tfmr_output # last-layer hidden-state, (all hidden_states), (all attentions)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "embeddings", None) is not None:
with tf.name_scope(self.embeddings.name):
self.embeddings.build(None)
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
# INTERFACE FOR ENCODER AND TASK SPECIFIC MODEL #
class TFDistilBertPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = DistilBertConfig
base_model_prefix = "distilbert"
DISTILBERT_START_DOCSTRING = r"""
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a [tf.keras.Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model) subclass. Use it
as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to general usage and
behavior.
<Tip>
TensorFlow models and layers in `transformers` accept two formats as input:
- having all inputs as keyword arguments (like PyTorch models), or
- having all inputs as a list, tuple or dict in the first positional argument.
The reason the second format is supported is that Keras methods prefer this format when passing inputs to models
and layers. Because of this support, when using methods like `model.fit()` things should "just work" for you - just
pass your inputs and labels in any format that `model.fit()` supports! If, however, you want to use the second
format outside of Keras methods like `fit()` and `predict()`, such as when creating your own layers or models with
the Keras `Functional` API, there are three possibilities you can use to gather all the input Tensors in the first
positional argument:
- a single Tensor with `input_ids` only and nothing else: `model(input_ids)`
- a list of varying length with one or several input Tensors IN THE ORDER given in the docstring:
`model([input_ids, attention_mask])` or `model([input_ids, attention_mask, token_type_ids])`
- a dictionary with one or several input Tensors associated to the input names given in the docstring:
`model({"input_ids": input_ids, "token_type_ids": token_type_ids})`
Note that when creating models and layers with
[subclassing](https://keras.io/guides/making_new_layers_and_models_via_subclassing/) then you don't need to worry
about any of this, as you can just pass inputs like you would to any other Python function!
</Tip>
Parameters:
config ([`DistilBertConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
DISTILBERT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`Numpy array` or `tf.Tensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.__call__`] and
[`PreTrainedTokenizer.encode`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`Numpy array` or `tf.Tensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
head_mask (`Numpy array` or `tf.Tensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`tf.Tensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail. This argument can be used only in eager mode, in graph mode the value in the
config will be used instead.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail. This argument can be used only in eager mode, in graph mode the value in the config will be
used instead.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple. This argument can be used in
eager mode, in graph mode the value will always be set to True.
training (`bool`, *optional*, defaults to `False`):
Whether or not to use the model in training mode (some modules like dropout modules have different
behaviors between training and evaluation).
"""
@add_start_docstrings(
"The bare DistilBERT encoder/transformer outputting raw hidden-states without any specific head on top.",
DISTILBERT_START_DOCSTRING,
)
class TFDistilBertModel(TFDistilBertPreTrainedModel):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.distilbert = TFDistilBertMainLayer(config, name="distilbert") # Embeddings
@unpack_inputs
@add_start_docstrings_to_model_forward(DISTILBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFBaseModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[TFBaseModelOutput, Tuple[tf.Tensor]]:
outputs = self.distilbert(
input_ids=input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "distilbert", None) is not None:
with tf.name_scope(self.distilbert.name):
self.distilbert.build(None)
class TFDistilBertLMHead(tf.keras.layers.Layer):
def __init__(self, config, input_embeddings, **kwargs):
super().__init__(**kwargs)
self.config = config
self.dim = config.dim
# The output weights are the same as the input embeddings, but there is
# an output-only bias for each token.
self.input_embeddings = input_embeddings
def build(self, input_shape):
self.bias = self.add_weight(shape=(self.config.vocab_size,), initializer="zeros", trainable=True, name="bias")
super().build(input_shape)
def get_output_embeddings(self):
return self.input_embeddings
def set_output_embeddings(self, value):
self.input_embeddings.weight = value
self.input_embeddings.vocab_size = shape_list(value)[0]
def get_bias(self):
return {"bias": self.bias}
def set_bias(self, value):
self.bias = value["bias"]
self.config.vocab_size = shape_list(value["bias"])[0]
def call(self, hidden_states):
seq_length = shape_list(tensor=hidden_states)[1]
hidden_states = tf.reshape(tensor=hidden_states, shape=[-1, self.dim])
hidden_states = tf.matmul(a=hidden_states, b=self.input_embeddings.weight, transpose_b=True)
hidden_states = tf.reshape(tensor=hidden_states, shape=[-1, seq_length, self.config.vocab_size])
hidden_states = tf.nn.bias_add(value=hidden_states, bias=self.bias)
return hidden_states
@add_start_docstrings(
"""DistilBert Model with a `masked language modeling` head on top.""",
DISTILBERT_START_DOCSTRING,
)
class TFDistilBertForMaskedLM(TFDistilBertPreTrainedModel, TFMaskedLanguageModelingLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.config = config
self.distilbert = TFDistilBertMainLayer(config, name="distilbert")
self.vocab_transform = tf.keras.layers.Dense(
config.dim, kernel_initializer=get_initializer(config.initializer_range), name="vocab_transform"
)
self.act = get_tf_activation(config.activation)
self.vocab_layer_norm = tf.keras.layers.LayerNormalization(epsilon=1e-12, name="vocab_layer_norm")
self.vocab_projector = TFDistilBertLMHead(config, self.distilbert.embeddings, name="vocab_projector")
def get_lm_head(self):
return self.vocab_projector
def get_prefix_bias_name(self):
warnings.warn("The method get_prefix_bias_name is deprecated. Please use `get_bias` instead.", FutureWarning)
return self.name + "/" + self.vocab_projector.name
@unpack_inputs
@add_start_docstrings_to_model_forward(DISTILBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFMaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[TFMaskedLMOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
"""
distilbert_output = self.distilbert(
input_ids=input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
hidden_states = distilbert_output[0] # (bs, seq_length, dim)
prediction_logits = self.vocab_transform(hidden_states) # (bs, seq_length, dim)
prediction_logits = self.act(prediction_logits) # (bs, seq_length, dim)
prediction_logits = self.vocab_layer_norm(prediction_logits) # (bs, seq_length, dim)
prediction_logits = self.vocab_projector(prediction_logits)
loss = None if labels is None else self.hf_compute_loss(labels, prediction_logits)
if not return_dict:
output = (prediction_logits,) + distilbert_output[1:]
return ((loss,) + output) if loss is not None else output
return TFMaskedLMOutput(
loss=loss,
logits=prediction_logits,
hidden_states=distilbert_output.hidden_states,
attentions=distilbert_output.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "distilbert", None) is not None:
with tf.name_scope(self.distilbert.name):
self.distilbert.build(None)
if getattr(self, "vocab_transform", None) is not None:
with tf.name_scope(self.vocab_transform.name):
self.vocab_transform.build([None, None, self.config.dim])
if getattr(self, "vocab_layer_norm", None) is not None:
with tf.name_scope(self.vocab_layer_norm.name):
self.vocab_layer_norm.build([None, None, self.config.dim])
if getattr(self, "vocab_projector", None) is not None:
with tf.name_scope(self.vocab_projector.name):
self.vocab_projector.build(None)
@add_start_docstrings(
"""
DistilBert Model transformer with a sequence classification/regression head on top (a linear layer on top of the
pooled output) e.g. for GLUE tasks.
""",
DISTILBERT_START_DOCSTRING,
)
class TFDistilBertForSequenceClassification(TFDistilBertPreTrainedModel, TFSequenceClassificationLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.distilbert = TFDistilBertMainLayer(config, name="distilbert")
self.pre_classifier = tf.keras.layers.Dense(
config.dim,
kernel_initializer=get_initializer(config.initializer_range),
activation="relu",
name="pre_classifier",
)
self.classifier = tf.keras.layers.Dense(
config.num_labels, kernel_initializer=get_initializer(config.initializer_range), name="classifier"
)
self.dropout = tf.keras.layers.Dropout(config.seq_classif_dropout)
self.config = config
@unpack_inputs
@add_start_docstrings_to_model_forward(DISTILBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFSequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[TFSequenceClassifierOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
distilbert_output = self.distilbert(
input_ids=input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
hidden_state = distilbert_output[0] # (bs, seq_len, dim)
pooled_output = hidden_state[:, 0] # (bs, dim)
pooled_output = self.pre_classifier(pooled_output) # (bs, dim)
pooled_output = self.dropout(pooled_output, training=training) # (bs, dim)
logits = self.classifier(pooled_output) # (bs, dim)
loss = None if labels is None else self.hf_compute_loss(labels, logits)
if not return_dict:
output = (logits,) + distilbert_output[1:]
return ((loss,) + output) if loss is not None else output
return TFSequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=distilbert_output.hidden_states,
attentions=distilbert_output.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "distilbert", None) is not None:
with tf.name_scope(self.distilbert.name):
self.distilbert.build(None)
if getattr(self, "pre_classifier", None) is not None:
with tf.name_scope(self.pre_classifier.name):
self.pre_classifier.build([None, None, self.config.dim])
if getattr(self, "classifier", None) is not None:
with tf.name_scope(self.classifier.name):
self.classifier.build([None, None, self.config.dim])
@add_start_docstrings(
"""
DistilBert Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g.
for Named-Entity-Recognition (NER) tasks.
""",
DISTILBERT_START_DOCSTRING,
)
class TFDistilBertForTokenClassification(TFDistilBertPreTrainedModel, TFTokenClassificationLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.distilbert = TFDistilBertMainLayer(config, name="distilbert")
self.dropout = tf.keras.layers.Dropout(config.dropout)
self.classifier = tf.keras.layers.Dense(
config.num_labels, kernel_initializer=get_initializer(config.initializer_range), name="classifier"
)
self.config = config
@unpack_inputs
@add_start_docstrings_to_model_forward(DISTILBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFTokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[TFTokenClassifierOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
outputs = self.distilbert(
input_ids=input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output, training=training)
logits = self.classifier(sequence_output)
loss = None if labels is None else self.hf_compute_loss(labels, logits)
if not return_dict:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFTokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "distilbert", None) is not None:
with tf.name_scope(self.distilbert.name):
self.distilbert.build(None)
if getattr(self, "classifier", None) is not None:
with tf.name_scope(self.classifier.name):
self.classifier.build([None, None, self.config.hidden_size])
@add_start_docstrings(
"""
DistilBert Model with a multiple choice classification head on top (a linear layer on top of the pooled output and
a softmax) e.g. for RocStories/SWAG tasks.
""",
DISTILBERT_START_DOCSTRING,
)
class TFDistilBertForMultipleChoice(TFDistilBertPreTrainedModel, TFMultipleChoiceLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.distilbert = TFDistilBertMainLayer(config, name="distilbert")
self.dropout = tf.keras.layers.Dropout(config.seq_classif_dropout)
self.pre_classifier = tf.keras.layers.Dense(
config.dim,
kernel_initializer=get_initializer(config.initializer_range),
activation="relu",
name="pre_classifier",
)
self.classifier = tf.keras.layers.Dense(
1, kernel_initializer=get_initializer(config.initializer_range), name="classifier"
)
self.config = config
@unpack_inputs
@add_start_docstrings_to_model_forward(
DISTILBERT_INPUTS_DOCSTRING.format("batch_size, num_choices, sequence_length")
)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFMultipleChoiceModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[TFMultipleChoiceModelOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size,)`, *optional*):
Labels for computing the multiple choice classification loss. Indices should be in `[0, ..., num_choices]`
where `num_choices` is the size of the second dimension of the input tensors. (See `input_ids` above)
"""
if input_ids is not None:
num_choices = shape_list(input_ids)[1]
seq_length = shape_list(input_ids)[2]
else:
num_choices = shape_list(inputs_embeds)[1]
seq_length = shape_list(inputs_embeds)[2]
flat_input_ids = tf.reshape(input_ids, (-1, seq_length)) if input_ids is not None else None
flat_attention_mask = tf.reshape(attention_mask, (-1, seq_length)) if attention_mask is not None else None
flat_inputs_embeds = (
tf.reshape(inputs_embeds, (-1, seq_length, shape_list(inputs_embeds)[3]))
if inputs_embeds is not None
else None
)
distilbert_output = self.distilbert(
flat_input_ids,
flat_attention_mask,
head_mask,
flat_inputs_embeds,
output_attentions,
output_hidden_states,
return_dict=return_dict,
training=training,
)
hidden_state = distilbert_output[0] # (bs, seq_len, dim)
pooled_output = hidden_state[:, 0] # (bs, dim)
pooled_output = self.pre_classifier(pooled_output) # (bs, dim)
pooled_output = self.dropout(pooled_output, training=training) # (bs, dim)
logits = self.classifier(pooled_output)
reshaped_logits = tf.reshape(logits, (-1, num_choices))
loss = None if labels is None else self.hf_compute_loss(labels, reshaped_logits)
if not return_dict:
output = (reshaped_logits,) + distilbert_output[1:]
return ((loss,) + output) if loss is not None else output
return TFMultipleChoiceModelOutput(
loss=loss,
logits=reshaped_logits,
hidden_states=distilbert_output.hidden_states,
attentions=distilbert_output.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "distilbert", None) is not None:
with tf.name_scope(self.distilbert.name):
self.distilbert.build(None)
if getattr(self, "pre_classifier", None) is not None:
with tf.name_scope(self.pre_classifier.name):
self.pre_classifier.build([None, None, self.config.dim])
if getattr(self, "classifier", None) is not None:
with tf.name_scope(self.classifier.name):
self.classifier.build([None, None, self.config.dim])
@add_start_docstrings(
"""
DistilBert Model with a span classification head on top for extractive question-answering tasks like SQuAD (a
linear layer on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
DISTILBERT_START_DOCSTRING,
)
class TFDistilBertForQuestionAnswering(TFDistilBertPreTrainedModel, TFQuestionAnsweringLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.distilbert = TFDistilBertMainLayer(config, name="distilbert")
self.qa_outputs = tf.keras.layers.Dense(
config.num_labels, kernel_initializer=get_initializer(config.initializer_range), name="qa_outputs"
)
assert config.num_labels == 2, f"Incorrect number of labels {config.num_labels} instead of 2"
self.dropout = tf.keras.layers.Dropout(config.qa_dropout)
self.config = config
@unpack_inputs
@add_start_docstrings_to_model_forward(DISTILBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFQuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
start_positions: np.ndarray | tf.Tensor | None = None,
end_positions: np.ndarray | tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[TFQuestionAnsweringModelOutput, Tuple[tf.Tensor]]:
r"""
start_positions (`tf.Tensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`tf.Tensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
"""
distilbert_output = self.distilbert(
input_ids=input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
hidden_states = distilbert_output[0] # (bs, max_query_len, dim)
hidden_states = self.dropout(hidden_states, training=training) # (bs, max_query_len, dim)
logits = self.qa_outputs(hidden_states) # (bs, max_query_len, 2)
start_logits, end_logits = tf.split(logits, 2, axis=-1)
start_logits = tf.squeeze(start_logits, axis=-1)
end_logits = tf.squeeze(end_logits, axis=-1)
loss = None
if start_positions is not None and end_positions is not None:
labels = {"start_position": start_positions}
labels["end_position"] = end_positions
loss = self.hf_compute_loss(labels, (start_logits, end_logits))
if not return_dict:
output = (start_logits, end_logits) + distilbert_output[1:]
return ((loss,) + output) if loss is not None else output
return TFQuestionAnsweringModelOutput(
loss=loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=distilbert_output.hidden_states,
attentions=distilbert_output.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "distilbert", None) is not None:
with tf.name_scope(self.distilbert.name):
self.distilbert.build(None)
if getattr(self, "qa_outputs", None) is not None:
with tf.name_scope(self.qa_outputs.name):
self.qa_outputs.build([None, None, self.config.dim])
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/distilbert/modeling_distilbert.py | # coding=utf-8
# Copyright 2019-present, the HuggingFace Inc. team, The Google AI Language Team and Facebook, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
PyTorch DistilBERT model adapted in part from Facebook, Inc XLM model (https://github.com/facebookresearch/XLM) and in
part from HuggingFace PyTorch version of Google AI Bert model (https://github.com/google-research/bert)
"""
import math
from typing import Dict, List, Optional, Set, Tuple, Union
import numpy as np
import torch
import torch.nn.functional as F
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import get_activation
from ...configuration_utils import PretrainedConfig
from ...integrations.deepspeed import is_deepspeed_zero3_enabled
from ...modeling_outputs import (
BaseModelOutput,
MaskedLMOutput,
MultipleChoiceModelOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_flash_attn_2_available,
is_flash_attn_greater_or_equal_2_10,
logging,
replace_return_docstrings,
)
from .configuration_distilbert import DistilBertConfig
if is_flash_attn_2_available():
from flash_attn import flash_attn_func, flash_attn_varlen_func
from flash_attn.bert_padding import index_first_axis, pad_input, unpad_input # noqa
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "distilbert-base-uncased"
_CONFIG_FOR_DOC = "DistilBertConfig"
DISTILBERT_PRETRAINED_MODEL_ARCHIVE_LIST = [
"distilbert-base-uncased",
"distilbert-base-uncased-distilled-squad",
"distilbert-base-cased",
"distilbert-base-cased-distilled-squad",
"distilbert-base-german-cased",
"distilbert-base-multilingual-cased",
"distilbert-base-uncased-finetuned-sst-2-english",
# See all DistilBERT models at https://huggingface.co/models?filter=distilbert
]
# UTILS AND BUILDING BLOCKS OF THE ARCHITECTURE #
# Copied from transformers.models.llama.modeling_llama._get_unpad_data
def _get_unpad_data(attention_mask):
seqlens_in_batch = attention_mask.sum(dim=-1, dtype=torch.int32)
indices = torch.nonzero(attention_mask.flatten(), as_tuple=False).flatten()
max_seqlen_in_batch = seqlens_in_batch.max().item()
cu_seqlens = F.pad(torch.cumsum(seqlens_in_batch, dim=0, dtype=torch.torch.int32), (1, 0))
return (
indices,
cu_seqlens,
max_seqlen_in_batch,
)
def create_sinusoidal_embeddings(n_pos: int, dim: int, out: torch.Tensor):
if is_deepspeed_zero3_enabled():
import deepspeed
with deepspeed.zero.GatheredParameters(out, modifier_rank=0):
if torch.distributed.get_rank() == 0:
_create_sinusoidal_embeddings(n_pos=n_pos, dim=dim, out=out)
else:
_create_sinusoidal_embeddings(n_pos=n_pos, dim=dim, out=out)
def _create_sinusoidal_embeddings(n_pos: int, dim: int, out: torch.Tensor):
position_enc = np.array([[pos / np.power(10000, 2 * (j // 2) / dim) for j in range(dim)] for pos in range(n_pos)])
out.requires_grad = False
out[:, 0::2] = torch.FloatTensor(np.sin(position_enc[:, 0::2]))
out[:, 1::2] = torch.FloatTensor(np.cos(position_enc[:, 1::2]))
out.detach_()
class Embeddings(nn.Module):
def __init__(self, config: PretrainedConfig):
super().__init__()
self.word_embeddings = nn.Embedding(config.vocab_size, config.dim, padding_idx=config.pad_token_id)
self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.dim)
if config.sinusoidal_pos_embds:
create_sinusoidal_embeddings(
n_pos=config.max_position_embeddings, dim=config.dim, out=self.position_embeddings.weight
)
self.LayerNorm = nn.LayerNorm(config.dim, eps=1e-12)
self.dropout = nn.Dropout(config.dropout)
self.register_buffer(
"position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)), persistent=False
)
def forward(self, input_ids: torch.Tensor, input_embeds: Optional[torch.Tensor] = None) -> torch.Tensor:
"""
Parameters:
input_ids (torch.Tensor):
torch.tensor(bs, max_seq_length) The token ids to embed.
input_embeds (*optional*, torch.Tensor):
The pre-computed word embeddings. Can only be passed if the input ids are `None`.
Returns: torch.tensor(bs, max_seq_length, dim) The embedded tokens (plus position embeddings, no token_type
embeddings)
"""
if input_ids is not None:
input_embeds = self.word_embeddings(input_ids) # (bs, max_seq_length, dim)
seq_length = input_embeds.size(1)
# Setting the position-ids to the registered buffer in constructor, it helps
# when tracing the model without passing position-ids, solves
# isues similar to issue #5664
if hasattr(self, "position_ids"):
position_ids = self.position_ids[:, :seq_length]
else:
position_ids = torch.arange(seq_length, dtype=torch.long, device=input_ids.device) # (max_seq_length)
position_ids = position_ids.unsqueeze(0).expand_as(input_ids) # (bs, max_seq_length)
position_embeddings = self.position_embeddings(position_ids) # (bs, max_seq_length, dim)
embeddings = input_embeds + position_embeddings # (bs, max_seq_length, dim)
embeddings = self.LayerNorm(embeddings) # (bs, max_seq_length, dim)
embeddings = self.dropout(embeddings) # (bs, max_seq_length, dim)
return embeddings
class MultiHeadSelfAttention(nn.Module):
def __init__(self, config: PretrainedConfig):
super().__init__()
self.config = config
self.n_heads = config.n_heads
self.dim = config.dim
self.dropout = nn.Dropout(p=config.attention_dropout)
self.is_causal = False
# Have an even number of multi heads that divide the dimensions
if self.dim % self.n_heads != 0:
# Raise value errors for even multi-head attention nodes
raise ValueError(f"self.n_heads: {self.n_heads} must divide self.dim: {self.dim} evenly")
self.q_lin = nn.Linear(in_features=config.dim, out_features=config.dim)
self.k_lin = nn.Linear(in_features=config.dim, out_features=config.dim)
self.v_lin = nn.Linear(in_features=config.dim, out_features=config.dim)
self.out_lin = nn.Linear(in_features=config.dim, out_features=config.dim)
self.pruned_heads: Set[int] = set()
self.attention_head_size = self.dim // self.n_heads
def prune_heads(self, heads: List[int]):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.n_heads, self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.q_lin = prune_linear_layer(self.q_lin, index)
self.k_lin = prune_linear_layer(self.k_lin, index)
self.v_lin = prune_linear_layer(self.v_lin, index)
self.out_lin = prune_linear_layer(self.out_lin, index, dim=1)
# Update hyper params
self.n_heads = self.n_heads - len(heads)
self.dim = self.attention_head_size * self.n_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
query: torch.Tensor,
key: torch.Tensor,
value: torch.Tensor,
mask: torch.Tensor,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Tuple[torch.Tensor, ...]:
"""
Parameters:
query: torch.tensor(bs, seq_length, dim)
key: torch.tensor(bs, seq_length, dim)
value: torch.tensor(bs, seq_length, dim)
mask: torch.tensor(bs, seq_length)
Returns:
weights: torch.tensor(bs, n_heads, seq_length, seq_length) Attention weights context: torch.tensor(bs,
seq_length, dim) Contextualized layer. Optional: only if `output_attentions=True`
"""
bs, q_length, dim = query.size()
k_length = key.size(1)
# assert dim == self.dim, f'Dimensions do not match: {dim} input vs {self.dim} configured'
# assert key.size() == value.size()
dim_per_head = self.dim // self.n_heads
mask_reshp = (bs, 1, 1, k_length)
def shape(x: torch.Tensor) -> torch.Tensor:
"""separate heads"""
return x.view(bs, -1, self.n_heads, dim_per_head).transpose(1, 2)
def unshape(x: torch.Tensor) -> torch.Tensor:
"""group heads"""
return x.transpose(1, 2).contiguous().view(bs, -1, self.n_heads * dim_per_head)
q = shape(self.q_lin(query)) # (bs, n_heads, q_length, dim_per_head)
k = shape(self.k_lin(key)) # (bs, n_heads, k_length, dim_per_head)
v = shape(self.v_lin(value)) # (bs, n_heads, k_length, dim_per_head)
q = q / math.sqrt(dim_per_head) # (bs, n_heads, q_length, dim_per_head)
scores = torch.matmul(q, k.transpose(2, 3)) # (bs, n_heads, q_length, k_length)
mask = (mask == 0).view(mask_reshp).expand_as(scores) # (bs, n_heads, q_length, k_length)
scores = scores.masked_fill(
mask, torch.tensor(torch.finfo(scores.dtype).min)
) # (bs, n_heads, q_length, k_length)
weights = nn.functional.softmax(scores, dim=-1) # (bs, n_heads, q_length, k_length)
weights = self.dropout(weights) # (bs, n_heads, q_length, k_length)
# Mask heads if we want to
if head_mask is not None:
weights = weights * head_mask
context = torch.matmul(weights, v) # (bs, n_heads, q_length, dim_per_head)
context = unshape(context) # (bs, q_length, dim)
context = self.out_lin(context) # (bs, q_length, dim)
if output_attentions:
return (context, weights)
else:
return (context,)
class DistilBertFlashAttention2(MultiHeadSelfAttention):
"""
DistilBert flash attention module. This module inherits from `MultiHeadSelfAttention` as the weights of the module
stays untouched. The only required change would be on the forward pass where it needs to correctly call the public
API of flash attention and deal with padding tokens in case the input contains any of them.
"""
# Copied from transformers.models.llama.modeling_llama.LlamaFlashAttention2.__init__
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
# TODO: Should be removed once Flash Attention for RoCm is bumped to 2.1.
# flash_attn<2.1 generates top-left aligned causal mask, while what is needed here is bottom-right alignement, that was made default for flash_attn>=2.1. This attribute is used to handle this difference. Reference: https://github.com/Dao-AILab/flash-attention/releases/tag/v2.1.0.
# Beware that with flash_attn<2.1, using q_seqlen != k_seqlen (except for the case q_seqlen == 1) produces a wrong mask (top-left).
self._flash_attn_uses_top_left_mask = not is_flash_attn_greater_or_equal_2_10()
def forward(
self,
query: torch.Tensor,
key: torch.Tensor,
value: torch.Tensor,
mask: torch.Tensor,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Tuple[torch.Tensor, ...]:
"""
Parameters:
query: torch.tensor(bs, seq_length, dim)
key: torch.tensor(bs, seq_length, dim)
value: torch.tensor(bs, seq_length, dim)
mask: torch.tensor(bs, seq_length)
Returns:
weights: torch.tensor(bs, n_heads, seq_length, seq_length) Attention weights context: torch.tensor(bs,
seq_length, dim) Contextualized layer. Optional: only if `output_attentions=True`
"""
batch_size, q_length, dim = query.size()
dim_per_head = self.dim // self.n_heads
def reshape(x: torch.Tensor) -> torch.Tensor:
"""separate heads"""
return x.view(batch_size, -1, self.n_heads, dim_per_head)
# Flash attention requires the input to have the shape
# batch_size x seq_length x head_dim x hidden_dim
query_states = reshape(self.q_lin(query))
key_states = reshape(self.k_lin(key))
value_states = reshape(self.v_lin(value))
attn_dropout = self.config.attention_dropout if self.training else 0.0
# In PEFT, usually we cast the layer norms in float32 for training stability reasons
# therefore the input hidden states gets silently casted in float32. Hence, we need
# cast them back in the correct dtype just to be sure everything works as expected.
# This might slowdown training & inference so it is recommended to not cast the LayerNorms
# in fp32. (LlamaRMSNorm handles it correctly)
if query_states.dtype == torch.float32:
if torch.is_autocast_enabled():
target_dtype = torch.get_autocast_gpu_dtype()
# Handle the case where the model is quantized
elif hasattr(self.config, "_pre_quantization_dtype"):
target_dtype = self.config._pre_quantization_dtype
else:
target_dtype = self.q_lin.weight.dtype
logger.warning_once(
f"The input hidden states seems to be silently casted in float32, this might be related to"
f" the fact you have upcasted embedding or layer norm layers in float32. We will cast back the input in"
f" {target_dtype}."
)
query_states = query_states.to(target_dtype)
key_states = key_states.to(target_dtype)
value_states = value_states.to(target_dtype)
attn_weights = self._flash_attention_forward(
query_states, key_states, value_states, mask, q_length, dropout=attn_dropout
)
attn_weights_reshaped = attn_weights.reshape(batch_size, q_length, self.n_heads * dim_per_head)
attn_output = self.out_lin(attn_weights_reshaped)
if output_attentions:
return (attn_output, attn_weights)
else:
return (attn_output,)
# Copied from transformers.models.llama.modeling_llama.LlamaFlashAttention2._flash_attention_forward with causal=True->causal=False
def _flash_attention_forward(
self, query_states, key_states, value_states, attention_mask, query_length, dropout=0.0, softmax_scale=None
):
"""
Calls the forward method of Flash Attention - if the input hidden states contain at least one padding token
first unpad the input, then computes the attention scores and pad the final attention scores.
Args:
query_states (`torch.Tensor`):
Input query states to be passed to Flash Attention API
key_states (`torch.Tensor`):
Input key states to be passed to Flash Attention API
value_states (`torch.Tensor`):
Input value states to be passed to Flash Attention API
attention_mask (`torch.Tensor`):
The padding mask - corresponds to a tensor of size `(batch_size, seq_len)` where 0 stands for the
position of padding tokens and 1 for the position of non-padding tokens.
dropout (`int`, *optional*):
Attention dropout
softmax_scale (`float`, *optional*):
The scaling of QK^T before applying softmax. Default to 1 / sqrt(head_dim)
"""
if not self._flash_attn_uses_top_left_mask:
causal = self.is_causal
else:
# TODO: Remove the `query_length != 1` check once Flash Attention for RoCm is bumped to 2.1. For details, please see the comment in LlamaFlashAttention2 __init__.
causal = self.is_causal and query_length != 1
# Contains at least one padding token in the sequence
if attention_mask is not None:
batch_size = query_states.shape[0]
query_states, key_states, value_states, indices_q, cu_seq_lens, max_seq_lens = self._upad_input(
query_states, key_states, value_states, attention_mask, query_length
)
cu_seqlens_q, cu_seqlens_k = cu_seq_lens
max_seqlen_in_batch_q, max_seqlen_in_batch_k = max_seq_lens
attn_output_unpad = flash_attn_varlen_func(
query_states,
key_states,
value_states,
cu_seqlens_q=cu_seqlens_q,
cu_seqlens_k=cu_seqlens_k,
max_seqlen_q=max_seqlen_in_batch_q,
max_seqlen_k=max_seqlen_in_batch_k,
dropout_p=dropout,
softmax_scale=softmax_scale,
causal=causal,
)
attn_output = pad_input(attn_output_unpad, indices_q, batch_size, query_length)
else:
attn_output = flash_attn_func(
query_states, key_states, value_states, dropout, softmax_scale=softmax_scale, causal=causal
)
return attn_output
# Copied from transformers.models.llama.modeling_llama.LlamaFlashAttention2._upad_input with num_heads->n_heads
def _upad_input(self, query_layer, key_layer, value_layer, attention_mask, query_length):
indices_k, cu_seqlens_k, max_seqlen_in_batch_k = _get_unpad_data(attention_mask)
batch_size, kv_seq_len, num_key_value_heads, head_dim = key_layer.shape
key_layer = index_first_axis(
key_layer.reshape(batch_size * kv_seq_len, num_key_value_heads, head_dim), indices_k
)
value_layer = index_first_axis(
value_layer.reshape(batch_size * kv_seq_len, num_key_value_heads, head_dim), indices_k
)
if query_length == kv_seq_len:
query_layer = index_first_axis(
query_layer.reshape(batch_size * kv_seq_len, self.n_heads, head_dim), indices_k
)
cu_seqlens_q = cu_seqlens_k
max_seqlen_in_batch_q = max_seqlen_in_batch_k
indices_q = indices_k
elif query_length == 1:
max_seqlen_in_batch_q = 1
cu_seqlens_q = torch.arange(
batch_size + 1, dtype=torch.int32, device=query_layer.device
) # There is a memcpy here, that is very bad.
indices_q = cu_seqlens_q[:-1]
query_layer = query_layer.squeeze(1)
else:
# The -q_len: slice assumes left padding.
attention_mask = attention_mask[:, -query_length:]
query_layer, indices_q, cu_seqlens_q, max_seqlen_in_batch_q = unpad_input(query_layer, attention_mask)
return (
query_layer,
key_layer,
value_layer,
indices_q,
(cu_seqlens_q, cu_seqlens_k),
(max_seqlen_in_batch_q, max_seqlen_in_batch_k),
)
class FFN(nn.Module):
def __init__(self, config: PretrainedConfig):
super().__init__()
self.dropout = nn.Dropout(p=config.dropout)
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.lin1 = nn.Linear(in_features=config.dim, out_features=config.hidden_dim)
self.lin2 = nn.Linear(in_features=config.hidden_dim, out_features=config.dim)
self.activation = get_activation(config.activation)
def forward(self, input: torch.Tensor) -> torch.Tensor:
return apply_chunking_to_forward(self.ff_chunk, self.chunk_size_feed_forward, self.seq_len_dim, input)
def ff_chunk(self, input: torch.Tensor) -> torch.Tensor:
x = self.lin1(input)
x = self.activation(x)
x = self.lin2(x)
x = self.dropout(x)
return x
DISTILBERT_ATTENTION_CLASSES = {
"eager": MultiHeadSelfAttention,
"flash_attention_2": DistilBertFlashAttention2,
}
class TransformerBlock(nn.Module):
def __init__(self, config: PretrainedConfig):
super().__init__()
# Have an even number of Configure multi-heads
if config.dim % config.n_heads != 0:
raise ValueError(f"config.n_heads {config.n_heads} must divide config.dim {config.dim} evenly")
self.attention = DISTILBERT_ATTENTION_CLASSES[config._attn_implementation](config)
self.sa_layer_norm = nn.LayerNorm(normalized_shape=config.dim, eps=1e-12)
self.ffn = FFN(config)
self.output_layer_norm = nn.LayerNorm(normalized_shape=config.dim, eps=1e-12)
def forward(
self,
x: torch.Tensor,
attn_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Tuple[torch.Tensor, ...]:
"""
Parameters:
x: torch.tensor(bs, seq_length, dim)
attn_mask: torch.tensor(bs, seq_length)
Returns:
sa_weights: torch.tensor(bs, n_heads, seq_length, seq_length) The attention weights ffn_output:
torch.tensor(bs, seq_length, dim) The output of the transformer block contextualization.
"""
# Self-Attention
sa_output = self.attention(
query=x,
key=x,
value=x,
mask=attn_mask,
head_mask=head_mask,
output_attentions=output_attentions,
)
if output_attentions:
sa_output, sa_weights = sa_output # (bs, seq_length, dim), (bs, n_heads, seq_length, seq_length)
else: # To handle these `output_attentions` or `output_hidden_states` cases returning tuples
if type(sa_output) != tuple:
raise TypeError(f"sa_output must be a tuple but it is {type(sa_output)} type")
sa_output = sa_output[0]
sa_output = self.sa_layer_norm(sa_output + x) # (bs, seq_length, dim)
# Feed Forward Network
ffn_output = self.ffn(sa_output) # (bs, seq_length, dim)
ffn_output: torch.Tensor = self.output_layer_norm(ffn_output + sa_output) # (bs, seq_length, dim)
output = (ffn_output,)
if output_attentions:
output = (sa_weights,) + output
return output
class Transformer(nn.Module):
def __init__(self, config: PretrainedConfig):
super().__init__()
self.n_layers = config.n_layers
self.layer = nn.ModuleList([TransformerBlock(config) for _ in range(config.n_layers)])
self.gradient_checkpointing = False
def forward(
self,
x: torch.Tensor,
attn_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: Optional[bool] = None,
) -> Union[BaseModelOutput, Tuple[torch.Tensor, ...]]: # docstyle-ignore
"""
Parameters:
x: torch.tensor(bs, seq_length, dim) Input sequence embedded.
attn_mask: torch.tensor(bs, seq_length) Attention mask on the sequence.
Returns:
hidden_state: torch.tensor(bs, seq_length, dim) Sequence of hidden states in the last (top)
layer all_hidden_states: Tuple[torch.tensor(bs, seq_length, dim)]
Tuple of length n_layers with the hidden states from each layer.
Optional: only if output_hidden_states=True
all_attentions: Tuple[torch.tensor(bs, n_heads, seq_length, seq_length)]
Tuple of length n_layers with the attention weights from each layer
Optional: only if output_attentions=True
"""
all_hidden_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
hidden_state = x
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_state,)
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer_module.__call__,
hidden_state,
attn_mask,
head_mask[i],
output_attentions,
)
else:
layer_outputs = layer_module(
hidden_state,
attn_mask,
head_mask[i],
output_attentions,
)
hidden_state = layer_outputs[-1]
if output_attentions:
if len(layer_outputs) != 2:
raise ValueError(f"The length of the layer_outputs should be 2, but it is {len(layer_outputs)}")
attentions = layer_outputs[0]
all_attentions = all_attentions + (attentions,)
else:
if len(layer_outputs) != 1:
raise ValueError(f"The length of the layer_outputs should be 1, but it is {len(layer_outputs)}")
# Add last layer
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_state,)
if not return_dict:
return tuple(v for v in [hidden_state, all_hidden_states, all_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=hidden_state, hidden_states=all_hidden_states, attentions=all_attentions
)
# INTERFACE FOR ENCODER AND TASK SPECIFIC MODEL #
class DistilBertPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = DistilBertConfig
load_tf_weights = None
base_model_prefix = "distilbert"
supports_gradient_checkpointing = True
_supports_flash_attn_2 = True
def _init_weights(self, module: nn.Module):
"""Initialize the weights."""
if isinstance(module, nn.Linear):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
DISTILBERT_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`DistilBertConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
DISTILBERT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.FloatTensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare DistilBERT encoder/transformer outputting raw hidden-states without any specific head on top.",
DISTILBERT_START_DOCSTRING,
)
class DistilBertModel(DistilBertPreTrainedModel):
def __init__(self, config: PretrainedConfig):
super().__init__(config)
self.embeddings = Embeddings(config) # Embeddings
self.transformer = Transformer(config) # Encoder
self._use_flash_attention_2 = config._attn_implementation == "flash_attention_2"
# Initialize weights and apply final processing
self.post_init()
def get_position_embeddings(self) -> nn.Embedding:
"""
Returns the position embeddings
"""
return self.embeddings.position_embeddings
def resize_position_embeddings(self, new_num_position_embeddings: int):
"""
Resizes position embeddings of the model if `new_num_position_embeddings != config.max_position_embeddings`.
Arguments:
new_num_position_embeddings (`int`):
The number of new position embedding matrix. If position embeddings are learned, increasing the size
will add newly initialized vectors at the end, whereas reducing the size will remove vectors from the
end. If position embeddings are not learned (*e.g.* sinusoidal position embeddings), increasing the
size will add correct vectors at the end following the position encoding algorithm, whereas reducing
the size will remove vectors from the end.
"""
num_position_embeds_diff = new_num_position_embeddings - self.config.max_position_embeddings
# no resizing needs to be done if the length stays the same
if num_position_embeds_diff == 0:
return
logger.info(f"Setting `config.max_position_embeddings={new_num_position_embeddings}`...")
self.config.max_position_embeddings = new_num_position_embeddings
old_position_embeddings_weight = self.embeddings.position_embeddings.weight.clone()
self.embeddings.position_embeddings = nn.Embedding(self.config.max_position_embeddings, self.config.dim)
if self.config.sinusoidal_pos_embds:
create_sinusoidal_embeddings(
n_pos=self.config.max_position_embeddings, dim=self.config.dim, out=self.position_embeddings.weight
)
else:
with torch.no_grad():
if num_position_embeds_diff > 0:
self.embeddings.position_embeddings.weight[:-num_position_embeds_diff] = nn.Parameter(
old_position_embeddings_weight
)
else:
self.embeddings.position_embeddings.weight = nn.Parameter(
old_position_embeddings_weight[:num_position_embeds_diff]
)
# move position_embeddings to correct device
self.embeddings.position_embeddings.to(self.device)
def get_input_embeddings(self) -> nn.Embedding:
return self.embeddings.word_embeddings
def set_input_embeddings(self, new_embeddings: nn.Embedding):
self.embeddings.word_embeddings = new_embeddings
def _prune_heads(self, heads_to_prune: Dict[int, List[List[int]]]):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.transformer.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(DISTILBERT_INPUTS_DOCSTRING.format("batch_size, num_choices"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[BaseModelOutput, Tuple[torch.Tensor, ...]]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
self.warn_if_padding_and_no_attention_mask(input_ids, attention_mask)
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
device = input_ids.device if input_ids is not None else inputs_embeds.device
# Prepare head mask if needed
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embeddings = self.embeddings(input_ids, inputs_embeds) # (bs, seq_length, dim)
if self._use_flash_attention_2:
attention_mask = attention_mask if (attention_mask is not None and 0 in attention_mask) else None
else:
if attention_mask is None:
attention_mask = torch.ones(input_shape, device=device) # (bs, seq_length)
return self.transformer(
x=embeddings,
attn_mask=attention_mask,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
@add_start_docstrings(
"""DistilBert Model with a `masked language modeling` head on top.""",
DISTILBERT_START_DOCSTRING,
)
class DistilBertForMaskedLM(DistilBertPreTrainedModel):
_tied_weights_keys = ["vocab_projector.weight"]
def __init__(self, config: PretrainedConfig):
super().__init__(config)
self.activation = get_activation(config.activation)
self.distilbert = DistilBertModel(config)
self.vocab_transform = nn.Linear(config.dim, config.dim)
self.vocab_layer_norm = nn.LayerNorm(config.dim, eps=1e-12)
self.vocab_projector = nn.Linear(config.dim, config.vocab_size)
# Initialize weights and apply final processing
self.post_init()
self.mlm_loss_fct = nn.CrossEntropyLoss()
def get_position_embeddings(self) -> nn.Embedding:
"""
Returns the position embeddings
"""
return self.distilbert.get_position_embeddings()
def resize_position_embeddings(self, new_num_position_embeddings: int):
"""
Resizes position embeddings of the model if `new_num_position_embeddings != config.max_position_embeddings`.
Arguments:
new_num_position_embeddings (`int`):
The number of new position embedding matrix. If position embeddings are learned, increasing the size
will add newly initialized vectors at the end, whereas reducing the size will remove vectors from the
end. If position embeddings are not learned (*e.g.* sinusoidal position embeddings), increasing the
size will add correct vectors at the end following the position encoding algorithm, whereas reducing
the size will remove vectors from the end.
"""
self.distilbert.resize_position_embeddings(new_num_position_embeddings)
def get_output_embeddings(self) -> nn.Module:
return self.vocab_projector
def set_output_embeddings(self, new_embeddings: nn.Module):
self.vocab_projector = new_embeddings
@add_start_docstrings_to_model_forward(DISTILBERT_INPUTS_DOCSTRING.format("batch_size, num_choices"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=MaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[MaskedLMOutput, Tuple[torch.Tensor, ...]]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
dlbrt_output = self.distilbert(
input_ids=input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = dlbrt_output[0] # (bs, seq_length, dim)
prediction_logits = self.vocab_transform(hidden_states) # (bs, seq_length, dim)
prediction_logits = self.activation(prediction_logits) # (bs, seq_length, dim)
prediction_logits = self.vocab_layer_norm(prediction_logits) # (bs, seq_length, dim)
prediction_logits = self.vocab_projector(prediction_logits) # (bs, seq_length, vocab_size)
mlm_loss = None
if labels is not None:
mlm_loss = self.mlm_loss_fct(prediction_logits.view(-1, prediction_logits.size(-1)), labels.view(-1))
if not return_dict:
output = (prediction_logits,) + dlbrt_output[1:]
return ((mlm_loss,) + output) if mlm_loss is not None else output
return MaskedLMOutput(
loss=mlm_loss,
logits=prediction_logits,
hidden_states=dlbrt_output.hidden_states,
attentions=dlbrt_output.attentions,
)
@add_start_docstrings(
"""
DistilBert Model transformer with a sequence classification/regression head on top (a linear layer on top of the
pooled output) e.g. for GLUE tasks.
""",
DISTILBERT_START_DOCSTRING,
)
class DistilBertForSequenceClassification(DistilBertPreTrainedModel):
def __init__(self, config: PretrainedConfig):
super().__init__(config)
self.num_labels = config.num_labels
self.config = config
self.distilbert = DistilBertModel(config)
self.pre_classifier = nn.Linear(config.dim, config.dim)
self.classifier = nn.Linear(config.dim, config.num_labels)
self.dropout = nn.Dropout(config.seq_classif_dropout)
# Initialize weights and apply final processing
self.post_init()
def get_position_embeddings(self) -> nn.Embedding:
"""
Returns the position embeddings
"""
return self.distilbert.get_position_embeddings()
def resize_position_embeddings(self, new_num_position_embeddings: int):
"""
Resizes position embeddings of the model if `new_num_position_embeddings != config.max_position_embeddings`.
Arguments:
new_num_position_embeddings (`int`):
The number of new position embedding matrix. If position embeddings are learned, increasing the size
will add newly initialized vectors at the end, whereas reducing the size will remove vectors from the
end. If position embeddings are not learned (*e.g.* sinusoidal position embeddings), increasing the
size will add correct vectors at the end following the position encoding algorithm, whereas reducing
the size will remove vectors from the end.
"""
self.distilbert.resize_position_embeddings(new_num_position_embeddings)
@add_start_docstrings_to_model_forward(DISTILBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=SequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[SequenceClassifierOutput, Tuple[torch.Tensor, ...]]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
distilbert_output = self.distilbert(
input_ids=input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_state = distilbert_output[0] # (bs, seq_len, dim)
pooled_output = hidden_state[:, 0] # (bs, dim)
pooled_output = self.pre_classifier(pooled_output) # (bs, dim)
pooled_output = nn.ReLU()(pooled_output) # (bs, dim)
pooled_output = self.dropout(pooled_output) # (bs, dim)
logits = self.classifier(pooled_output) # (bs, num_labels)
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + distilbert_output[1:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=distilbert_output.hidden_states,
attentions=distilbert_output.attentions,
)
@add_start_docstrings(
"""
DistilBert Model with a span classification head on top for extractive question-answering tasks like SQuAD (a
linear layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
DISTILBERT_START_DOCSTRING,
)
class DistilBertForQuestionAnswering(DistilBertPreTrainedModel):
def __init__(self, config: PretrainedConfig):
super().__init__(config)
self.distilbert = DistilBertModel(config)
self.qa_outputs = nn.Linear(config.dim, config.num_labels)
if config.num_labels != 2:
raise ValueError(f"config.num_labels should be 2, but it is {config.num_labels}")
self.dropout = nn.Dropout(config.qa_dropout)
# Initialize weights and apply final processing
self.post_init()
def get_position_embeddings(self) -> nn.Embedding:
"""
Returns the position embeddings
"""
return self.distilbert.get_position_embeddings()
def resize_position_embeddings(self, new_num_position_embeddings: int):
"""
Resizes position embeddings of the model if `new_num_position_embeddings != config.max_position_embeddings`.
Arguments:
new_num_position_embeddings (`int`):
The number of new position embedding matrix. If position embeddings are learned, increasing the size
will add newly initialized vectors at the end, whereas reducing the size will remove vectors from the
end. If position embeddings are not learned (*e.g.* sinusoidal position embeddings), increasing the
size will add correct vectors at the end following the position encoding algorithm, whereas reducing
the size will remove vectors from the end.
"""
self.distilbert.resize_position_embeddings(new_num_position_embeddings)
@add_start_docstrings_to_model_forward(DISTILBERT_INPUTS_DOCSTRING.format("batch_size, num_choices"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=QuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
start_positions: Optional[torch.Tensor] = None,
end_positions: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[QuestionAnsweringModelOutput, Tuple[torch.Tensor, ...]]:
r"""
start_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
distilbert_output = self.distilbert(
input_ids=input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = distilbert_output[0] # (bs, max_query_len, dim)
hidden_states = self.dropout(hidden_states) # (bs, max_query_len, dim)
logits = self.qa_outputs(hidden_states) # (bs, max_query_len, 2)
start_logits, end_logits = logits.split(1, dim=-1)
start_logits = start_logits.squeeze(-1).contiguous() # (bs, max_query_len)
end_logits = end_logits.squeeze(-1).contiguous() # (bs, max_query_len)
total_loss = None
if start_positions is not None and end_positions is not None:
# If we are on multi-GPU, split add a dimension
if len(start_positions.size()) > 1:
start_positions = start_positions.squeeze(-1)
if len(end_positions.size()) > 1:
end_positions = end_positions.squeeze(-1)
# sometimes the start/end positions are outside our model inputs, we ignore these terms
ignored_index = start_logits.size(1)
start_positions = start_positions.clamp(0, ignored_index)
end_positions = end_positions.clamp(0, ignored_index)
loss_fct = nn.CrossEntropyLoss(ignore_index=ignored_index)
start_loss = loss_fct(start_logits, start_positions)
end_loss = loss_fct(end_logits, end_positions)
total_loss = (start_loss + end_loss) / 2
if not return_dict:
output = (start_logits, end_logits) + distilbert_output[1:]
return ((total_loss,) + output) if total_loss is not None else output
return QuestionAnsweringModelOutput(
loss=total_loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=distilbert_output.hidden_states,
attentions=distilbert_output.attentions,
)
@add_start_docstrings(
"""
DistilBert Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g.
for Named-Entity-Recognition (NER) tasks.
""",
DISTILBERT_START_DOCSTRING,
)
class DistilBertForTokenClassification(DistilBertPreTrainedModel):
def __init__(self, config: PretrainedConfig):
super().__init__(config)
self.num_labels = config.num_labels
self.distilbert = DistilBertModel(config)
self.dropout = nn.Dropout(config.dropout)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
def get_position_embeddings(self) -> nn.Embedding:
"""
Returns the position embeddings
"""
return self.distilbert.get_position_embeddings()
def resize_position_embeddings(self, new_num_position_embeddings: int):
"""
Resizes position embeddings of the model if `new_num_position_embeddings != config.max_position_embeddings`.
Arguments:
new_num_position_embeddings (`int`):
The number of new position embedding matrix. If position embeddings are learned, increasing the size
will add newly initialized vectors at the end, whereas reducing the size will remove vectors from the
end. If position embeddings are not learned (*e.g.* sinusoidal position embeddings), increasing the
size will add correct vectors at the end following the position encoding algorithm, whereas reducing
the size will remove vectors from the end.
"""
self.distilbert.resize_position_embeddings(new_num_position_embeddings)
@add_start_docstrings_to_model_forward(DISTILBERT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[TokenClassifierOutput, Tuple[torch.Tensor, ...]]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.distilbert(
input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output)
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return TokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
DistilBert Model with a multiple choice classification head on top (a linear layer on top of the pooled output and
a softmax) e.g. for RocStories/SWAG tasks.
""",
DISTILBERT_START_DOCSTRING,
)
class DistilBertForMultipleChoice(DistilBertPreTrainedModel):
def __init__(self, config: PretrainedConfig):
super().__init__(config)
self.distilbert = DistilBertModel(config)
self.pre_classifier = nn.Linear(config.dim, config.dim)
self.classifier = nn.Linear(config.dim, 1)
self.dropout = nn.Dropout(config.seq_classif_dropout)
# Initialize weights and apply final processing
self.post_init()
def get_position_embeddings(self) -> nn.Embedding:
"""
Returns the position embeddings
"""
return self.distilbert.get_position_embeddings()
def resize_position_embeddings(self, new_num_position_embeddings: int):
"""
Resizes position embeddings of the model if `new_num_position_embeddings != config.max_position_embeddings`.
Arguments:
new_num_position_embeddings (`int`)
The number of new position embeddings. If position embeddings are learned, increasing the size will add
newly initialized vectors at the end, whereas reducing the size will remove vectors from the end. If
position embeddings are not learned (*e.g.* sinusoidal position embeddings), increasing the size will
add correct vectors at the end following the position encoding algorithm, whereas reducing the size
will remove vectors from the end.
"""
self.distilbert.resize_position_embeddings(new_num_position_embeddings)
@add_start_docstrings_to_model_forward(
DISTILBERT_INPUTS_DOCSTRING.format("batch_size, num_choices, sequence_length")
)
@replace_return_docstrings(output_type=MultipleChoiceModelOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[MultipleChoiceModelOutput, Tuple[torch.Tensor, ...]]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the multiple choice classification loss. Indices should be in `[0, ...,
num_choices-1]` where `num_choices` is the size of the second dimension of the input tensors. (See
`input_ids` above)
Returns:
Examples:
```python
>>> from transformers import AutoTokenizer, DistilBertForMultipleChoice
>>> import torch
>>> tokenizer = AutoTokenizer.from_pretrained("distilbert-base-cased")
>>> model = DistilBertForMultipleChoice.from_pretrained("distilbert-base-cased")
>>> prompt = "In Italy, pizza served in formal settings, such as at a restaurant, is presented unsliced."
>>> choice0 = "It is eaten with a fork and a knife."
>>> choice1 = "It is eaten while held in the hand."
>>> labels = torch.tensor(0).unsqueeze(0) # choice0 is correct (according to Wikipedia ;)), batch size 1
>>> encoding = tokenizer([[prompt, choice0], [prompt, choice1]], return_tensors="pt", padding=True)
>>> outputs = model(**{k: v.unsqueeze(0) for k, v in encoding.items()}, labels=labels) # batch size is 1
>>> # the linear classifier still needs to be trained
>>> loss = outputs.loss
>>> logits = outputs.logits
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
num_choices = input_ids.shape[1] if input_ids is not None else inputs_embeds.shape[1]
input_ids = input_ids.view(-1, input_ids.size(-1)) if input_ids is not None else None
attention_mask = attention_mask.view(-1, attention_mask.size(-1)) if attention_mask is not None else None
inputs_embeds = (
inputs_embeds.view(-1, inputs_embeds.size(-2), inputs_embeds.size(-1))
if inputs_embeds is not None
else None
)
outputs = self.distilbert(
input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_state = outputs[0] # (bs * num_choices, seq_len, dim)
pooled_output = hidden_state[:, 0] # (bs * num_choices, dim)
pooled_output = self.pre_classifier(pooled_output) # (bs * num_choices, dim)
pooled_output = nn.ReLU()(pooled_output) # (bs * num_choices, dim)
pooled_output = self.dropout(pooled_output) # (bs * num_choices, dim)
logits = self.classifier(pooled_output) # (bs * num_choices, 1)
reshaped_logits = logits.view(-1, num_choices) # (bs, num_choices)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(reshaped_logits, labels)
if not return_dict:
output = (reshaped_logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return MultipleChoiceModelOutput(
loss=loss,
logits=reshaped_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/distilbert/tokenization_distilbert_fast.py | # coding=utf-8
# Copyright 2018 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes for DistilBERT."""
import json
from typing import List, Optional, Tuple
from tokenizers import normalizers
from ...tokenization_utils_fast import PreTrainedTokenizerFast
from ...utils import logging
from .tokenization_distilbert import DistilBertTokenizer
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "vocab.txt", "tokenizer_file": "tokenizer.json"}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {
"distilbert-base-uncased": "https://huggingface.co/distilbert-base-uncased/resolve/main/vocab.txt",
"distilbert-base-uncased-distilled-squad": (
"https://huggingface.co/distilbert-base-uncased-distilled-squad/resolve/main/vocab.txt"
),
"distilbert-base-cased": "https://huggingface.co/distilbert-base-cased/resolve/main/vocab.txt",
"distilbert-base-cased-distilled-squad": (
"https://huggingface.co/distilbert-base-cased-distilled-squad/resolve/main/vocab.txt"
),
"distilbert-base-german-cased": "https://huggingface.co/distilbert-base-german-cased/resolve/main/vocab.txt",
"distilbert-base-multilingual-cased": (
"https://huggingface.co/distilbert-base-multilingual-cased/resolve/main/vocab.txt"
),
},
"tokenizer_file": {
"distilbert-base-uncased": "https://huggingface.co/distilbert-base-uncased/resolve/main/tokenizer.json",
"distilbert-base-uncased-distilled-squad": (
"https://huggingface.co/distilbert-base-uncased-distilled-squad/resolve/main/tokenizer.json"
),
"distilbert-base-cased": "https://huggingface.co/distilbert-base-cased/resolve/main/tokenizer.json",
"distilbert-base-cased-distilled-squad": (
"https://huggingface.co/distilbert-base-cased-distilled-squad/resolve/main/tokenizer.json"
),
"distilbert-base-german-cased": (
"https://huggingface.co/distilbert-base-german-cased/resolve/main/tokenizer.json"
),
"distilbert-base-multilingual-cased": (
"https://huggingface.co/distilbert-base-multilingual-cased/resolve/main/tokenizer.json"
),
},
}
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {
"distilbert-base-uncased": 512,
"distilbert-base-uncased-distilled-squad": 512,
"distilbert-base-cased": 512,
"distilbert-base-cased-distilled-squad": 512,
"distilbert-base-german-cased": 512,
"distilbert-base-multilingual-cased": 512,
}
PRETRAINED_INIT_CONFIGURATION = {
"distilbert-base-uncased": {"do_lower_case": True},
"distilbert-base-uncased-distilled-squad": {"do_lower_case": True},
"distilbert-base-cased": {"do_lower_case": False},
"distilbert-base-cased-distilled-squad": {"do_lower_case": False},
"distilbert-base-german-cased": {"do_lower_case": False},
"distilbert-base-multilingual-cased": {"do_lower_case": False},
}
class DistilBertTokenizerFast(PreTrainedTokenizerFast):
r"""
Construct a "fast" DistilBERT tokenizer (backed by HuggingFace's *tokenizers* library). Based on WordPiece.
This tokenizer inherits from [`PreTrainedTokenizerFast`] which contains most of the main methods. Users should
refer to this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
File containing the vocabulary.
do_lower_case (`bool`, *optional*, defaults to `True`):
Whether or not to lowercase the input when tokenizing.
unk_token (`str`, *optional*, defaults to `"[UNK]"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
sep_token (`str`, *optional*, defaults to `"[SEP]"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
pad_token (`str`, *optional*, defaults to `"[PAD]"`):
The token used for padding, for example when batching sequences of different lengths.
cls_token (`str`, *optional*, defaults to `"[CLS]"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
mask_token (`str`, *optional*, defaults to `"[MASK]"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
clean_text (`bool`, *optional*, defaults to `True`):
Whether or not to clean the text before tokenization by removing any control characters and replacing all
whitespaces by the classic one.
tokenize_chinese_chars (`bool`, *optional*, defaults to `True`):
Whether or not to tokenize Chinese characters. This should likely be deactivated for Japanese (see [this
issue](https://github.com/huggingface/transformers/issues/328)).
strip_accents (`bool`, *optional*):
Whether or not to strip all accents. If this option is not specified, then it will be determined by the
value for `lowercase` (as in the original BERT).
wordpieces_prefix (`str`, *optional*, defaults to `"##"`):
The prefix for subwords.
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
pretrained_init_configuration = PRETRAINED_INIT_CONFIGURATION
model_input_names = ["input_ids", "attention_mask"]
slow_tokenizer_class = DistilBertTokenizer
def __init__(
self,
vocab_file=None,
tokenizer_file=None,
do_lower_case=True,
unk_token="[UNK]",
sep_token="[SEP]",
pad_token="[PAD]",
cls_token="[CLS]",
mask_token="[MASK]",
tokenize_chinese_chars=True,
strip_accents=None,
**kwargs,
):
super().__init__(
vocab_file,
tokenizer_file=tokenizer_file,
do_lower_case=do_lower_case,
unk_token=unk_token,
sep_token=sep_token,
pad_token=pad_token,
cls_token=cls_token,
mask_token=mask_token,
tokenize_chinese_chars=tokenize_chinese_chars,
strip_accents=strip_accents,
**kwargs,
)
normalizer_state = json.loads(self.backend_tokenizer.normalizer.__getstate__())
if (
normalizer_state.get("lowercase", do_lower_case) != do_lower_case
or normalizer_state.get("strip_accents", strip_accents) != strip_accents
or normalizer_state.get("handle_chinese_chars", tokenize_chinese_chars) != tokenize_chinese_chars
):
normalizer_class = getattr(normalizers, normalizer_state.pop("type"))
normalizer_state["lowercase"] = do_lower_case
normalizer_state["strip_accents"] = strip_accents
normalizer_state["handle_chinese_chars"] = tokenize_chinese_chars
self.backend_tokenizer.normalizer = normalizer_class(**normalizer_state)
self.do_lower_case = do_lower_case
# Copied from transformers.models.bert.tokenization_bert_fast.BertTokenizerFast.build_inputs_with_special_tokens
def build_inputs_with_special_tokens(self, token_ids_0, token_ids_1=None):
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. A BERT sequence has the following format:
- single sequence: `[CLS] X [SEP]`
- pair of sequences: `[CLS] A [SEP] B [SEP]`
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
output = [self.cls_token_id] + token_ids_0 + [self.sep_token_id]
if token_ids_1 is not None:
output += token_ids_1 + [self.sep_token_id]
return output
# Copied from transformers.models.bert.tokenization_bert_fast.BertTokenizerFast.create_token_type_ids_from_sequences
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. A BERT sequence
pair mask has the following format:
```
0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1
| first sequence | second sequence |
```
If `token_ids_1` is `None`, this method only returns the first portion of the mask (0s).
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [token type IDs](../glossary#token-type-ids) according to the given sequence(s).
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return len(cls + token_ids_0 + sep) * [0]
return len(cls + token_ids_0 + sep) * [0] + len(token_ids_1 + sep) * [1]
# Copied from transformers.models.bert.tokenization_bert_fast.BertTokenizerFast.save_vocabulary
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
files = self._tokenizer.model.save(save_directory, name=filename_prefix)
return tuple(files)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/distilbert/tokenization_distilbert.py | # coding=utf-8
# Copyright 2018 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes for DistilBERT."""
import collections
import os
import unicodedata
from typing import List, Optional, Tuple
from ...tokenization_utils import PreTrainedTokenizer, _is_control, _is_punctuation, _is_whitespace
from ...utils import logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "vocab.txt"}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {
"distilbert-base-uncased": "https://huggingface.co/distilbert-base-uncased/resolve/main/vocab.txt",
"distilbert-base-uncased-distilled-squad": (
"https://huggingface.co/distilbert-base-uncased-distilled-squad/resolve/main/vocab.txt"
),
"distilbert-base-cased": "https://huggingface.co/distilbert-base-cased/resolve/main/vocab.txt",
"distilbert-base-cased-distilled-squad": (
"https://huggingface.co/distilbert-base-cased-distilled-squad/resolve/main/vocab.txt"
),
"distilbert-base-german-cased": "https://huggingface.co/distilbert-base-german-cased/resolve/main/vocab.txt",
"distilbert-base-multilingual-cased": (
"https://huggingface.co/distilbert-base-multilingual-cased/resolve/main/vocab.txt"
),
}
}
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {
"distilbert-base-uncased": 512,
"distilbert-base-uncased-distilled-squad": 512,
"distilbert-base-cased": 512,
"distilbert-base-cased-distilled-squad": 512,
"distilbert-base-german-cased": 512,
"distilbert-base-multilingual-cased": 512,
}
PRETRAINED_INIT_CONFIGURATION = {
"distilbert-base-uncased": {"do_lower_case": True},
"distilbert-base-uncased-distilled-squad": {"do_lower_case": True},
"distilbert-base-cased": {"do_lower_case": False},
"distilbert-base-cased-distilled-squad": {"do_lower_case": False},
"distilbert-base-german-cased": {"do_lower_case": False},
"distilbert-base-multilingual-cased": {"do_lower_case": False},
}
# Copied from transformers.models.bert.tokenization_bert.load_vocab
def load_vocab(vocab_file):
"""Loads a vocabulary file into a dictionary."""
vocab = collections.OrderedDict()
with open(vocab_file, "r", encoding="utf-8") as reader:
tokens = reader.readlines()
for index, token in enumerate(tokens):
token = token.rstrip("\n")
vocab[token] = index
return vocab
# Copied from transformers.models.bert.tokenization_bert.whitespace_tokenize
def whitespace_tokenize(text):
"""Runs basic whitespace cleaning and splitting on a piece of text."""
text = text.strip()
if not text:
return []
tokens = text.split()
return tokens
class DistilBertTokenizer(PreTrainedTokenizer):
r"""
Construct a DistilBERT tokenizer. Based on WordPiece.
This tokenizer inherits from [`PreTrainedTokenizer`] which contains most of the main methods. Users should refer to
this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
File containing the vocabulary.
do_lower_case (`bool`, *optional*, defaults to `True`):
Whether or not to lowercase the input when tokenizing.
do_basic_tokenize (`bool`, *optional*, defaults to `True`):
Whether or not to do basic tokenization before WordPiece.
never_split (`Iterable`, *optional*):
Collection of tokens which will never be split during tokenization. Only has an effect when
`do_basic_tokenize=True`
unk_token (`str`, *optional*, defaults to `"[UNK]"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
sep_token (`str`, *optional*, defaults to `"[SEP]"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
pad_token (`str`, *optional*, defaults to `"[PAD]"`):
The token used for padding, for example when batching sequences of different lengths.
cls_token (`str`, *optional*, defaults to `"[CLS]"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
mask_token (`str`, *optional*, defaults to `"[MASK]"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
tokenize_chinese_chars (`bool`, *optional*, defaults to `True`):
Whether or not to tokenize Chinese characters.
This should likely be deactivated for Japanese (see this
[issue](https://github.com/huggingface/transformers/issues/328)).
strip_accents (`bool`, *optional*):
Whether or not to strip all accents. If this option is not specified, then it will be determined by the
value for `lowercase` (as in the original BERT).
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
pretrained_init_configuration = PRETRAINED_INIT_CONFIGURATION
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
model_input_names = ["input_ids", "attention_mask"]
def __init__(
self,
vocab_file,
do_lower_case=True,
do_basic_tokenize=True,
never_split=None,
unk_token="[UNK]",
sep_token="[SEP]",
pad_token="[PAD]",
cls_token="[CLS]",
mask_token="[MASK]",
tokenize_chinese_chars=True,
strip_accents=None,
**kwargs,
):
if not os.path.isfile(vocab_file):
raise ValueError(
f"Can't find a vocabulary file at path '{vocab_file}'. To load the vocabulary from a Google pretrained"
" model use `tokenizer = DistilBertTokenizer.from_pretrained(PRETRAINED_MODEL_NAME)`"
)
self.vocab = load_vocab(vocab_file)
self.ids_to_tokens = collections.OrderedDict([(ids, tok) for tok, ids in self.vocab.items()])
self.do_basic_tokenize = do_basic_tokenize
if do_basic_tokenize:
self.basic_tokenizer = BasicTokenizer(
do_lower_case=do_lower_case,
never_split=never_split,
tokenize_chinese_chars=tokenize_chinese_chars,
strip_accents=strip_accents,
)
self.wordpiece_tokenizer = WordpieceTokenizer(vocab=self.vocab, unk_token=str(unk_token))
super().__init__(
do_lower_case=do_lower_case,
do_basic_tokenize=do_basic_tokenize,
never_split=never_split,
unk_token=unk_token,
sep_token=sep_token,
pad_token=pad_token,
cls_token=cls_token,
mask_token=mask_token,
tokenize_chinese_chars=tokenize_chinese_chars,
strip_accents=strip_accents,
**kwargs,
)
@property
# Copied from transformers.models.bert.tokenization_bert.BertTokenizer.do_lower_case
def do_lower_case(self):
return self.basic_tokenizer.do_lower_case
@property
# Copied from transformers.models.bert.tokenization_bert.BertTokenizer.vocab_size
def vocab_size(self):
return len(self.vocab)
# Copied from transformers.models.bert.tokenization_bert.BertTokenizer.get_vocab
def get_vocab(self):
return dict(self.vocab, **self.added_tokens_encoder)
# Copied from transformers.models.bert.tokenization_bert.BertTokenizer._tokenize
def _tokenize(self, text, split_special_tokens=False):
split_tokens = []
if self.do_basic_tokenize:
for token in self.basic_tokenizer.tokenize(
text, never_split=self.all_special_tokens if not split_special_tokens else None
):
# If the token is part of the never_split set
if token in self.basic_tokenizer.never_split:
split_tokens.append(token)
else:
split_tokens += self.wordpiece_tokenizer.tokenize(token)
else:
split_tokens = self.wordpiece_tokenizer.tokenize(text)
return split_tokens
# Copied from transformers.models.bert.tokenization_bert.BertTokenizer._convert_token_to_id
def _convert_token_to_id(self, token):
"""Converts a token (str) in an id using the vocab."""
return self.vocab.get(token, self.vocab.get(self.unk_token))
# Copied from transformers.models.bert.tokenization_bert.BertTokenizer._convert_id_to_token
def _convert_id_to_token(self, index):
"""Converts an index (integer) in a token (str) using the vocab."""
return self.ids_to_tokens.get(index, self.unk_token)
# Copied from transformers.models.bert.tokenization_bert.BertTokenizer.convert_tokens_to_string
def convert_tokens_to_string(self, tokens):
"""Converts a sequence of tokens (string) in a single string."""
out_string = " ".join(tokens).replace(" ##", "").strip()
return out_string
# Copied from transformers.models.bert.tokenization_bert.BertTokenizer.build_inputs_with_special_tokens
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. A BERT sequence has the following format:
- single sequence: `[CLS] X [SEP]`
- pair of sequences: `[CLS] A [SEP] B [SEP]`
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
if token_ids_1 is None:
return [self.cls_token_id] + token_ids_0 + [self.sep_token_id]
cls = [self.cls_token_id]
sep = [self.sep_token_id]
return cls + token_ids_0 + sep + token_ids_1 + sep
# Copied from transformers.models.bert.tokenization_bert.BertTokenizer.get_special_tokens_mask
def get_special_tokens_mask(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieve sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer `prepare_for_model` method.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
already_has_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
`List[int]`: A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
return super().get_special_tokens_mask(
token_ids_0=token_ids_0, token_ids_1=token_ids_1, already_has_special_tokens=True
)
if token_ids_1 is not None:
return [1] + ([0] * len(token_ids_0)) + [1] + ([0] * len(token_ids_1)) + [1]
return [1] + ([0] * len(token_ids_0)) + [1]
# Copied from transformers.models.bert.tokenization_bert.BertTokenizer.create_token_type_ids_from_sequences
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. A BERT sequence
pair mask has the following format:
```
0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1
| first sequence | second sequence |
```
If `token_ids_1` is `None`, this method only returns the first portion of the mask (0s).
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [token type IDs](../glossary#token-type-ids) according to the given sequence(s).
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return len(cls + token_ids_0 + sep) * [0]
return len(cls + token_ids_0 + sep) * [0] + len(token_ids_1 + sep) * [1]
# Copied from transformers.models.bert.tokenization_bert.BertTokenizer.save_vocabulary
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
index = 0
if os.path.isdir(save_directory):
vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
else:
vocab_file = (filename_prefix + "-" if filename_prefix else "") + save_directory
with open(vocab_file, "w", encoding="utf-8") as writer:
for token, token_index in sorted(self.vocab.items(), key=lambda kv: kv[1]):
if index != token_index:
logger.warning(
f"Saving vocabulary to {vocab_file}: vocabulary indices are not consecutive."
" Please check that the vocabulary is not corrupted!"
)
index = token_index
writer.write(token + "\n")
index += 1
return (vocab_file,)
# Copied from transformers.models.bert.tokenization_bert.BasicTokenizer
class BasicTokenizer(object):
"""
Constructs a BasicTokenizer that will run basic tokenization (punctuation splitting, lower casing, etc.).
Args:
do_lower_case (`bool`, *optional*, defaults to `True`):
Whether or not to lowercase the input when tokenizing.
never_split (`Iterable`, *optional*):
Collection of tokens which will never be split during tokenization. Only has an effect when
`do_basic_tokenize=True`
tokenize_chinese_chars (`bool`, *optional*, defaults to `True`):
Whether or not to tokenize Chinese characters.
This should likely be deactivated for Japanese (see this
[issue](https://github.com/huggingface/transformers/issues/328)).
strip_accents (`bool`, *optional*):
Whether or not to strip all accents. If this option is not specified, then it will be determined by the
value for `lowercase` (as in the original BERT).
do_split_on_punc (`bool`, *optional*, defaults to `True`):
In some instances we want to skip the basic punctuation splitting so that later tokenization can capture
the full context of the words, such as contractions.
"""
def __init__(
self,
do_lower_case=True,
never_split=None,
tokenize_chinese_chars=True,
strip_accents=None,
do_split_on_punc=True,
):
if never_split is None:
never_split = []
self.do_lower_case = do_lower_case
self.never_split = set(never_split)
self.tokenize_chinese_chars = tokenize_chinese_chars
self.strip_accents = strip_accents
self.do_split_on_punc = do_split_on_punc
def tokenize(self, text, never_split=None):
"""
Basic Tokenization of a piece of text. For sub-word tokenization, see WordPieceTokenizer.
Args:
never_split (`List[str]`, *optional*)
Kept for backward compatibility purposes. Now implemented directly at the base class level (see
[`PreTrainedTokenizer.tokenize`]) List of token not to split.
"""
# union() returns a new set by concatenating the two sets.
never_split = self.never_split.union(set(never_split)) if never_split else self.never_split
text = self._clean_text(text)
# This was added on November 1st, 2018 for the multilingual and Chinese
# models. This is also applied to the English models now, but it doesn't
# matter since the English models were not trained on any Chinese data
# and generally don't have any Chinese data in them (there are Chinese
# characters in the vocabulary because Wikipedia does have some Chinese
# words in the English Wikipedia.).
if self.tokenize_chinese_chars:
text = self._tokenize_chinese_chars(text)
# prevents treating the same character with different unicode codepoints as different characters
unicode_normalized_text = unicodedata.normalize("NFC", text)
orig_tokens = whitespace_tokenize(unicode_normalized_text)
split_tokens = []
for token in orig_tokens:
if token not in never_split:
if self.do_lower_case:
token = token.lower()
if self.strip_accents is not False:
token = self._run_strip_accents(token)
elif self.strip_accents:
token = self._run_strip_accents(token)
split_tokens.extend(self._run_split_on_punc(token, never_split))
output_tokens = whitespace_tokenize(" ".join(split_tokens))
return output_tokens
def _run_strip_accents(self, text):
"""Strips accents from a piece of text."""
text = unicodedata.normalize("NFD", text)
output = []
for char in text:
cat = unicodedata.category(char)
if cat == "Mn":
continue
output.append(char)
return "".join(output)
def _run_split_on_punc(self, text, never_split=None):
"""Splits punctuation on a piece of text."""
if not self.do_split_on_punc or (never_split is not None and text in never_split):
return [text]
chars = list(text)
i = 0
start_new_word = True
output = []
while i < len(chars):
char = chars[i]
if _is_punctuation(char):
output.append([char])
start_new_word = True
else:
if start_new_word:
output.append([])
start_new_word = False
output[-1].append(char)
i += 1
return ["".join(x) for x in output]
def _tokenize_chinese_chars(self, text):
"""Adds whitespace around any CJK character."""
output = []
for char in text:
cp = ord(char)
if self._is_chinese_char(cp):
output.append(" ")
output.append(char)
output.append(" ")
else:
output.append(char)
return "".join(output)
def _is_chinese_char(self, cp):
"""Checks whether CP is the codepoint of a CJK character."""
# This defines a "chinese character" as anything in the CJK Unicode block:
# https://en.wikipedia.org/wiki/CJK_Unified_Ideographs_(Unicode_block)
#
# Note that the CJK Unicode block is NOT all Japanese and Korean characters,
# despite its name. The modern Korean Hangul alphabet is a different block,
# as is Japanese Hiragana and Katakana. Those alphabets are used to write
# space-separated words, so they are not treated specially and handled
# like the all of the other languages.
if (
(cp >= 0x4E00 and cp <= 0x9FFF)
or (cp >= 0x3400 and cp <= 0x4DBF) #
or (cp >= 0x20000 and cp <= 0x2A6DF) #
or (cp >= 0x2A700 and cp <= 0x2B73F) #
or (cp >= 0x2B740 and cp <= 0x2B81F) #
or (cp >= 0x2B820 and cp <= 0x2CEAF) #
or (cp >= 0xF900 and cp <= 0xFAFF)
or (cp >= 0x2F800 and cp <= 0x2FA1F) #
): #
return True
return False
def _clean_text(self, text):
"""Performs invalid character removal and whitespace cleanup on text."""
output = []
for char in text:
cp = ord(char)
if cp == 0 or cp == 0xFFFD or _is_control(char):
continue
if _is_whitespace(char):
output.append(" ")
else:
output.append(char)
return "".join(output)
# Copied from transformers.models.bert.tokenization_bert.WordpieceTokenizer
class WordpieceTokenizer(object):
"""Runs WordPiece tokenization."""
def __init__(self, vocab, unk_token, max_input_chars_per_word=100):
self.vocab = vocab
self.unk_token = unk_token
self.max_input_chars_per_word = max_input_chars_per_word
def tokenize(self, text):
"""
Tokenizes a piece of text into its word pieces. This uses a greedy longest-match-first algorithm to perform
tokenization using the given vocabulary.
For example, `input = "unaffable"` wil return as output `["un", "##aff", "##able"]`.
Args:
text: A single token or whitespace separated tokens. This should have
already been passed through *BasicTokenizer*.
Returns:
A list of wordpiece tokens.
"""
output_tokens = []
for token in whitespace_tokenize(text):
chars = list(token)
if len(chars) > self.max_input_chars_per_word:
output_tokens.append(self.unk_token)
continue
is_bad = False
start = 0
sub_tokens = []
while start < len(chars):
end = len(chars)
cur_substr = None
while start < end:
substr = "".join(chars[start:end])
if start > 0:
substr = "##" + substr
if substr in self.vocab:
cur_substr = substr
break
end -= 1
if cur_substr is None:
is_bad = True
break
sub_tokens.append(cur_substr)
start = end
if is_bad:
output_tokens.append(self.unk_token)
else:
output_tokens.extend(sub_tokens)
return output_tokens
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/distilbert/configuration_distilbert.py | # coding=utf-8
# Copyright 2019-present, the HuggingFace Inc. team, The Google AI Language Team and Facebook, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" DistilBERT model configuration"""
from collections import OrderedDict
from typing import Mapping
from ...configuration_utils import PretrainedConfig
from ...onnx import OnnxConfig
from ...utils import logging
logger = logging.get_logger(__name__)
DISTILBERT_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"distilbert-base-uncased": "https://huggingface.co/distilbert-base-uncased/resolve/main/config.json",
"distilbert-base-uncased-distilled-squad": (
"https://huggingface.co/distilbert-base-uncased-distilled-squad/resolve/main/config.json"
),
"distilbert-base-cased": "https://huggingface.co/distilbert-base-cased/resolve/main/config.json",
"distilbert-base-cased-distilled-squad": (
"https://huggingface.co/distilbert-base-cased-distilled-squad/resolve/main/config.json"
),
"distilbert-base-german-cased": "https://huggingface.co/distilbert-base-german-cased/resolve/main/config.json",
"distilbert-base-multilingual-cased": (
"https://huggingface.co/distilbert-base-multilingual-cased/resolve/main/config.json"
),
"distilbert-base-uncased-finetuned-sst-2-english": (
"https://huggingface.co/distilbert-base-uncased-finetuned-sst-2-english/resolve/main/config.json"
),
}
class DistilBertConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`DistilBertModel`] or a [`TFDistilBertModel`]. It
is used to instantiate a DistilBERT model according to the specified arguments, defining the model architecture.
Instantiating a configuration with the defaults will yield a similar configuration to that of the DistilBERT
[distilbert-base-uncased](https://huggingface.co/distilbert-base-uncased) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 30522):
Vocabulary size of the DistilBERT model. Defines the number of different tokens that can be represented by
the `inputs_ids` passed when calling [`DistilBertModel`] or [`TFDistilBertModel`].
max_position_embeddings (`int`, *optional*, defaults to 512):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
sinusoidal_pos_embds (`boolean`, *optional*, defaults to `False`):
Whether to use sinusoidal positional embeddings.
n_layers (`int`, *optional*, defaults to 6):
Number of hidden layers in the Transformer encoder.
n_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
dim (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
hidden_dim (`int`, *optional*, defaults to 3072):
The size of the "intermediate" (often named feed-forward) layer in the Transformer encoder.
dropout (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_dropout (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention probabilities.
activation (`str` or `Callable`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"silu"` and `"gelu_new"` are supported.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
qa_dropout (`float`, *optional*, defaults to 0.1):
The dropout probabilities used in the question answering model [`DistilBertForQuestionAnswering`].
seq_classif_dropout (`float`, *optional*, defaults to 0.2):
The dropout probabilities used in the sequence classification and the multiple choice model
[`DistilBertForSequenceClassification`].
Examples:
```python
>>> from transformers import DistilBertConfig, DistilBertModel
>>> # Initializing a DistilBERT configuration
>>> configuration = DistilBertConfig()
>>> # Initializing a model (with random weights) from the configuration
>>> model = DistilBertModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "distilbert"
attribute_map = {
"hidden_size": "dim",
"num_attention_heads": "n_heads",
"num_hidden_layers": "n_layers",
}
def __init__(
self,
vocab_size=30522,
max_position_embeddings=512,
sinusoidal_pos_embds=False,
n_layers=6,
n_heads=12,
dim=768,
hidden_dim=4 * 768,
dropout=0.1,
attention_dropout=0.1,
activation="gelu",
initializer_range=0.02,
qa_dropout=0.1,
seq_classif_dropout=0.2,
pad_token_id=0,
**kwargs,
):
self.vocab_size = vocab_size
self.max_position_embeddings = max_position_embeddings
self.sinusoidal_pos_embds = sinusoidal_pos_embds
self.n_layers = n_layers
self.n_heads = n_heads
self.dim = dim
self.hidden_dim = hidden_dim
self.dropout = dropout
self.attention_dropout = attention_dropout
self.activation = activation
self.initializer_range = initializer_range
self.qa_dropout = qa_dropout
self.seq_classif_dropout = seq_classif_dropout
super().__init__(**kwargs, pad_token_id=pad_token_id)
class DistilBertOnnxConfig(OnnxConfig):
@property
def inputs(self) -> Mapping[str, Mapping[int, str]]:
if self.task == "multiple-choice":
dynamic_axis = {0: "batch", 1: "choice", 2: "sequence"}
else:
dynamic_axis = {0: "batch", 1: "sequence"}
return OrderedDict(
[
("input_ids", dynamic_axis),
("attention_mask", dynamic_axis),
]
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/distilbert/__init__.py | # Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_flax_available,
is_tf_available,
is_tokenizers_available,
is_torch_available,
)
_import_structure = {
"configuration_distilbert": [
"DISTILBERT_PRETRAINED_CONFIG_ARCHIVE_MAP",
"DistilBertConfig",
"DistilBertOnnxConfig",
],
"tokenization_distilbert": ["DistilBertTokenizer"],
}
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["tokenization_distilbert_fast"] = ["DistilBertTokenizerFast"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_distilbert"] = [
"DISTILBERT_PRETRAINED_MODEL_ARCHIVE_LIST",
"DistilBertForMaskedLM",
"DistilBertForMultipleChoice",
"DistilBertForQuestionAnswering",
"DistilBertForSequenceClassification",
"DistilBertForTokenClassification",
"DistilBertModel",
"DistilBertPreTrainedModel",
]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_distilbert"] = [
"TF_DISTILBERT_PRETRAINED_MODEL_ARCHIVE_LIST",
"TFDistilBertForMaskedLM",
"TFDistilBertForMultipleChoice",
"TFDistilBertForQuestionAnswering",
"TFDistilBertForSequenceClassification",
"TFDistilBertForTokenClassification",
"TFDistilBertMainLayer",
"TFDistilBertModel",
"TFDistilBertPreTrainedModel",
]
try:
if not is_flax_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_flax_distilbert"] = [
"FlaxDistilBertForMaskedLM",
"FlaxDistilBertForMultipleChoice",
"FlaxDistilBertForQuestionAnswering",
"FlaxDistilBertForSequenceClassification",
"FlaxDistilBertForTokenClassification",
"FlaxDistilBertModel",
"FlaxDistilBertPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_distilbert import (
DISTILBERT_PRETRAINED_CONFIG_ARCHIVE_MAP,
DistilBertConfig,
DistilBertOnnxConfig,
)
from .tokenization_distilbert import DistilBertTokenizer
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .tokenization_distilbert_fast import DistilBertTokenizerFast
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_distilbert import (
DISTILBERT_PRETRAINED_MODEL_ARCHIVE_LIST,
DistilBertForMaskedLM,
DistilBertForMultipleChoice,
DistilBertForQuestionAnswering,
DistilBertForSequenceClassification,
DistilBertForTokenClassification,
DistilBertModel,
DistilBertPreTrainedModel,
)
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_distilbert import (
TF_DISTILBERT_PRETRAINED_MODEL_ARCHIVE_LIST,
TFDistilBertForMaskedLM,
TFDistilBertForMultipleChoice,
TFDistilBertForQuestionAnswering,
TFDistilBertForSequenceClassification,
TFDistilBertForTokenClassification,
TFDistilBertMainLayer,
TFDistilBertModel,
TFDistilBertPreTrainedModel,
)
try:
if not is_flax_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_flax_distilbert import (
FlaxDistilBertForMaskedLM,
FlaxDistilBertForMultipleChoice,
FlaxDistilBertForQuestionAnswering,
FlaxDistilBertForSequenceClassification,
FlaxDistilBertForTokenClassification,
FlaxDistilBertModel,
FlaxDistilBertPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/distilbert/modeling_flax_distilbert.py | # coding=utf-8
# Copyright 2019-present, the HuggingFace Inc. team, The Google AI Language Team and Facebook, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import math
from typing import Callable, Optional, Tuple
import flax.linen as nn
import jax
import jax.numpy as jnp
import numpy as np
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.traverse_util import flatten_dict, unflatten_dict
from jax import lax
from ...modeling_flax_outputs import (
FlaxBaseModelOutput,
FlaxMaskedLMOutput,
FlaxMultipleChoiceModelOutput,
FlaxQuestionAnsweringModelOutput,
FlaxSequenceClassifierOutput,
FlaxTokenClassifierOutput,
)
from ...modeling_flax_utils import ACT2FN, FlaxPreTrainedModel, append_call_sample_docstring, overwrite_call_docstring
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_distilbert import DistilBertConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "distilbert-base-uncased"
_CONFIG_FOR_DOC = "DistilBertConfig"
FLAX_DISTILBERT_START_DOCSTRING = r"""
This model inherits from [`FlaxPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading, saving and converting weights from PyTorch models)
This model is also a
[flax.linen.Module](https://flax.readthedocs.io/en/latest/api_reference/flax.linen/module.html) subclass. Use it as
a regular Flax linen Module and refer to the Flax documentation for all matter related to general usage and
behavior.
Finally, this model supports inherent JAX features such as:
- [Just-In-Time (JIT) compilation](https://jax.readthedocs.io/en/latest/jax.html#just-in-time-compilation-jit)
- [Automatic Differentiation](https://jax.readthedocs.io/en/latest/jax.html#automatic-differentiation)
- [Vectorization](https://jax.readthedocs.io/en/latest/jax.html#vectorization-vmap)
- [Parallelization](https://jax.readthedocs.io/en/latest/jax.html#parallelization-pmap)
Parameters:
config ([`DistilBertConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
DISTILBERT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`numpy.ndarray` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`numpy.ndarray` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
def get_angles(pos, i, d_model):
angle_rates = 1 / np.power(10000, (2 * (i // 2)) / np.float32(d_model))
return pos * angle_rates
def positional_encoding(position, d_model):
# create the sinusoidal pattern for the positional encoding
angle_rads = get_angles(np.arange(position)[:, np.newaxis], np.arange(d_model)[np.newaxis, :], d_model)
# apply sin to even indices in the array; 2i
angle_rads[:, 0::2] = np.sin(angle_rads[:, 0::2])
# apply cos to odd indices in the array; 2i+1
angle_rads[:, 1::2] = np.cos(angle_rads[:, 1::2])
pos_encoding = angle_rads[np.newaxis, ...]
return jnp.array(pos_encoding)
class FlaxEmbeddings(nn.Module):
"""Construct the embeddings from word, position and token_type embeddings."""
config: DistilBertConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.word_embeddings = nn.Embed(
self.config.vocab_size,
self.config.dim,
embedding_init=jax.nn.initializers.normal(stddev=self.config.initializer_range),
)
if not self.config.sinusoidal_pos_embds:
self.position_embeddings = nn.Embed(
self.config.max_position_embeddings,
self.config.dim,
embedding_init=jax.nn.initializers.normal(stddev=self.config.initializer_range),
)
else:
self.pos_encoding = positional_encoding(self.config.max_position_embeddings, self.config.dim)
self.LayerNorm = nn.LayerNorm(epsilon=1e-12, dtype=self.dtype)
self.dropout = nn.Dropout(rate=self.config.dropout)
def __call__(self, input_ids, deterministic: bool = True):
# Embed
batch_size, seq_length = input_ids.shape
inputs_embeds = self.word_embeddings(input_ids.astype("i4"))
if not self.config.sinusoidal_pos_embds:
position_ids = jnp.arange(seq_length).astype("i4")
position_ids = jnp.broadcast_to(position_ids, shape=(batch_size, seq_length))
position_embeds = self.position_embeddings(position_ids.astype("i4"))
else:
position_embeds = self.pos_encoding[:, :seq_length, :]
# explictly cast the positions here, since self.embed_positions are not registered as parameters
position_embeds = position_embeds.astype(inputs_embeds.dtype)
# Sum all embeddings
hidden_states = inputs_embeds + position_embeds
# Layer Norm
hidden_states = self.LayerNorm(hidden_states)
hidden_states = self.dropout(hidden_states, deterministic=deterministic)
return hidden_states
class FlaxMultiHeadSelfAttention(nn.Module):
config: DistilBertConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.n_heads = self.config.n_heads
self.dim = self.config.dim
self.dropout = nn.Dropout(rate=self.config.attention_dropout)
if not (self.dim % self.n_heads == 0):
raise ValueError(f"Hidden size {self.dim} not dividable by number of heads {self.n_heads}")
self.q_lin = nn.Dense(
self.dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(stddev=self.config.initializer_range),
)
self.k_lin = nn.Dense(
self.dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(stddev=self.config.initializer_range),
)
self.v_lin = nn.Dense(
self.dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(stddev=self.config.initializer_range),
)
self.out_lin = nn.Dense(
self.dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(stddev=self.config.initializer_range),
)
def __call__(
self,
query,
key,
value,
mask,
deterministic: bool = True,
output_attentions: bool = False,
):
bs, q_len, dim = query.shape
k_len = key.shape[1]
# assert dim == self.dim, f'Dimensions do not match: {dim} input vs {self.dim} configured'
# assert key.size() == value.size()
dim_per_head = self.dim // self.n_heads
mask_reshp = (bs, 1, 1, k_len)
def shape(x):
"""separate heads"""
return x.reshape(bs, -1, self.n_heads, dim_per_head).transpose(0, 2, 1, 3)
def unshape(x):
"""group heads"""
return x.transpose(0, 2, 1, 3).reshape(bs, -1, self.n_heads * dim_per_head)
q = shape(self.q_lin(query)) # (bs, n_heads, q_len, dim_per_head)
k = shape(self.k_lin(key)) # (bs, n_heads, k_len, dim_per_head)
v = shape(self.v_lin(value)) # (bs, n_heads, k_len, dim_per_head)
q = q / math.sqrt(dim_per_head) # (bs, n_heads, q_len, dim_per_head)
scores = jnp.matmul(q, k.transpose(0, 1, 3, 2)) # (bs, n_heads, q_len, k_len)
mask = jnp.reshape(mask, mask_reshp)
mask = mask.astype(scores.dtype)
scores = scores - 1e30 * (1.0 - mask)
weights = nn.softmax(scores, axis=-1) # (bs, n_heads, q_len, k_len)
weights = self.dropout(weights, deterministic=deterministic)
context = jnp.matmul(weights, v) # (bs, n_heads, q_len, dim_per_head)
context = unshape(context) # (bs, q_len, dim)
context = self.out_lin(context) # (bs, q_len, dim)
if output_attentions:
return (context, weights)
else:
return (context,)
class FlaxFFN(nn.Module):
config: DistilBertConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.dropout = nn.Dropout(rate=self.config.dropout)
self.chunk_size_feed_forward = self.config.chunk_size_feed_forward
self.seq_len_dim = 1
self.lin1 = nn.Dense(
self.config.hidden_dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(stddev=self.config.initializer_range),
)
self.lin2 = nn.Dense(
self.config.dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(stddev=self.config.initializer_range),
)
self.activation = ACT2FN[self.config.activation]
def __call__(self, hidden_states, deterministic: bool = True):
hidden_states = self.lin1(hidden_states)
hidden_states = self.activation(hidden_states)
hidden_states = self.lin2(hidden_states)
hidden_states = self.dropout(hidden_states, deterministic=deterministic)
return hidden_states
class FlaxTransformerBlock(nn.Module):
config: DistilBertConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
assert (
self.config.dim % self.config.n_heads == 0
), f"Hidden size {self.config.dim} not dividable by number of heads {self.config.n_heads}"
self.attention = FlaxMultiHeadSelfAttention(self.config, dtype=self.dtype)
self.sa_layer_norm = nn.LayerNorm(epsilon=1e-12, dtype=self.dtype)
self.ffn = FlaxFFN(self.config, dtype=self.dtype)
self.output_layer_norm = nn.LayerNorm(epsilon=1e-12, dtype=self.dtype)
def __call__(
self,
hidden_states,
attn_mask,
output_attentions: bool = False,
deterministic: bool = True,
):
# Self-Attention
sa_output = self.attention(
query=hidden_states,
key=hidden_states,
value=hidden_states,
mask=attn_mask,
output_attentions=output_attentions,
deterministic=deterministic,
)
if output_attentions:
sa_output, sa_weights = sa_output
else:
assert type(sa_output) == tuple
sa_output = sa_output[0]
sa_output = self.sa_layer_norm(sa_output + hidden_states)
# Feed Forward Network
ffn_output = self.ffn(sa_output, deterministic=deterministic)
ffn_output = self.output_layer_norm(ffn_output + sa_output)
output = (ffn_output,)
if output_attentions:
output = (sa_weights,) + output
return output
class FlaxTransformer(nn.Module):
config: DistilBertConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.layers = [
FlaxTransformerBlock(self.config, name=str(i), dtype=self.dtype) for i in range(self.config.n_layers)
]
def __call__(
self,
hidden_states,
attention_mask,
output_attentions: bool = False,
output_hidden_states: bool = False,
deterministic: bool = True,
return_dict: bool = False,
):
all_hidden_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
for layer_module in self.layers:
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_outputs = layer_module(
hidden_states=hidden_states,
attn_mask=attention_mask,
output_attentions=output_attentions,
deterministic=deterministic,
)
hidden_states = layer_outputs[-1]
if output_attentions:
assert len(layer_outputs) == 2
attentions = layer_outputs[0]
all_attentions = all_attentions + (attentions,)
else:
assert len(layer_outputs) == 1
# Add last layer
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_attentions, all_hidden_states] if v is not None)
return FlaxBaseModelOutput(
last_hidden_state=hidden_states, hidden_states=all_hidden_states, attentions=all_attentions
)
class FlaxTransformerEncoder(nn.Module):
config: DistilBertConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.layer = FlaxTransformer(self.config, dtype=self.dtype)
def __call__(
self,
hidden_states,
attention_mask,
output_attentions: bool = False,
output_hidden_states: bool = False,
deterministic: bool = True,
return_dict: bool = False,
):
return self.layer(
hidden_states=hidden_states,
attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
deterministic=deterministic,
return_dict=return_dict,
)
class FlaxDistilBertLMDecoder(nn.Module):
config: DistilBertConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
bias_init: Callable[..., np.ndarray] = jax.nn.initializers.zeros
def setup(self):
self.bias = self.param("bias", self.bias_init, (self.config.vocab_size,))
def __call__(self, inputs, kernel):
inputs = jnp.asarray(inputs, self.dtype)
kernel = jnp.asarray(kernel, self.dtype)
y = lax.dot_general(inputs, kernel, (((inputs.ndim - 1,), (0,)), ((), ())))
bias = jnp.asarray(self.bias, self.dtype)
y = y + bias
return y
class FlaxDistilBertPreTrainedModel(FlaxPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = DistilBertConfig
base_model_prefix = "distilbert"
module_class: nn.Module = None
def __init__(
self,
config: DistilBertConfig,
input_shape: Tuple = (1, 1),
seed: int = 0,
dtype: jnp.dtype = jnp.float32,
_do_init: bool = True,
**kwargs,
):
module = self.module_class(config=config, dtype=dtype, **kwargs)
super().__init__(config, module, input_shape=input_shape, seed=seed, dtype=dtype, _do_init=_do_init)
def init_weights(self, rng: jax.random.PRNGKey, input_shape: Tuple, params: FrozenDict = None) -> FrozenDict:
# init input tensors
input_ids = jnp.zeros(input_shape, dtype="i4")
attention_mask = jnp.ones_like(input_ids)
params_rng, dropout_rng = jax.random.split(rng)
rngs = {"params": params_rng, "dropout": dropout_rng}
random_params = self.module.init(rngs, input_ids, attention_mask, return_dict=False)["params"]
if params is not None:
random_params = flatten_dict(unfreeze(random_params))
params = flatten_dict(unfreeze(params))
for missing_key in self._missing_keys:
params[missing_key] = random_params[missing_key]
self._missing_keys = set()
return freeze(unflatten_dict(params))
else:
return random_params
@add_start_docstrings_to_model_forward(DISTILBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
def __call__(
self,
input_ids,
attention_mask=None,
head_mask=None,
params: dict = None,
dropout_rng: jax.random.PRNGKey = None,
train: bool = False,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
):
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
if attention_mask is None:
attention_mask = jnp.ones_like(input_ids)
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
return self.module.apply(
{"params": params or self.params},
jnp.array(input_ids, dtype="i4"),
jnp.array(attention_mask, dtype="i4"),
not train,
output_attentions,
output_hidden_states,
return_dict,
rngs=rngs,
)
class FlaxDistilBertModule(nn.Module):
config: DistilBertConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.embeddings = FlaxEmbeddings(self.config, dtype=self.dtype)
self.transformer = FlaxTransformerEncoder(self.config, dtype=self.dtype)
def __call__(
self,
input_ids,
attention_mask,
deterministic: bool = True,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
input_embeds = self.embeddings(input_ids, deterministic=deterministic)
return self.transformer(
hidden_states=input_embeds,
attention_mask=attention_mask,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
@add_start_docstrings(
"The bare DistilBert Model transformer outputting raw hidden-states without any specific head on top.",
FLAX_DISTILBERT_START_DOCSTRING,
)
class FlaxDistilBertModel(FlaxDistilBertPreTrainedModel):
module_class = FlaxDistilBertModule
append_call_sample_docstring(FlaxDistilBertModel, _CHECKPOINT_FOR_DOC, None, _CONFIG_FOR_DOC)
class FlaxDistilBertForMaskedLMModule(nn.Module):
config: DistilBertConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.distilbert = FlaxDistilBertModule(self.config, dtype=self.dtype)
self.vocab_transform = nn.Dense(
self.config.dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(stddev=self.config.initializer_range),
)
self.vocab_layer_norm = nn.LayerNorm(epsilon=1e-12, dtype=self.dtype)
if self.config.tie_word_embeddings:
self.vocab_projector = FlaxDistilBertLMDecoder(
self.config,
dtype=self.dtype,
)
else:
self.vocab_projector = nn.Dense(
self.config.vocab_size,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(stddev=self.config.initializer_range),
)
def __call__(
self,
input_ids,
attention_mask,
deterministic: bool = True,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
dlbrt_output = self.distilbert(
input_ids=input_ids,
attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
deterministic=deterministic,
return_dict=return_dict,
)
hidden_states = dlbrt_output[0]
prediction_logits = self.vocab_transform(hidden_states)
prediction_logits = ACT2FN[self.config.activation](prediction_logits)
prediction_logits = self.vocab_layer_norm(prediction_logits)
if self.config.tie_word_embeddings:
shared_embedding = self.distilbert.variables["params"]["embeddings"]["word_embeddings"]["embedding"]
prediction_logits = self.vocab_projector(prediction_logits, shared_embedding.T)
else:
prediction_logits = self.vocab_projector(prediction_logits)
if not return_dict:
output = (prediction_logits,) + dlbrt_output[1:]
return output
return FlaxMaskedLMOutput(
logits=prediction_logits,
hidden_states=dlbrt_output.hidden_states,
attentions=dlbrt_output.attentions,
)
@add_start_docstrings("""DistilBert Model with a `language modeling` head on top.""", FLAX_DISTILBERT_START_DOCSTRING)
class FlaxDistilBertForMaskedLM(FlaxDistilBertPreTrainedModel):
module_class = FlaxDistilBertForMaskedLMModule
append_call_sample_docstring(FlaxDistilBertForMaskedLM, _CHECKPOINT_FOR_DOC, FlaxMaskedLMOutput, _CONFIG_FOR_DOC)
class FlaxDistilBertForSequenceClassificationModule(nn.Module):
config: DistilBertConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.distilbert = FlaxDistilBertModule(config=self.config, dtype=self.dtype)
self.pre_classifier = nn.Dense(
self.config.dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(stddev=self.config.initializer_range),
)
self.dropout = nn.Dropout(rate=self.config.seq_classif_dropout)
self.classifier = nn.Dense(
self.config.num_labels,
dtype=self.dtype,
)
def __call__(
self,
input_ids,
attention_mask,
deterministic: bool = True,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# Model
distilbert_output = self.distilbert(
input_ids,
attention_mask,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_state = distilbert_output[0] # (bs, seq_len, dim)
pooled_output = hidden_state[:, 0] # (bs, dim)
pooled_output = self.pre_classifier(pooled_output) # (bs, dim)
pooled_output = ACT2FN["relu"](pooled_output)
pooled_output = self.dropout(pooled_output, deterministic=deterministic)
logits = self.classifier(pooled_output) # (bs, dim)
if not return_dict:
return (logits,) + distilbert_output[1:]
return FlaxSequenceClassifierOutput(
logits=logits,
hidden_states=distilbert_output.hidden_states,
attentions=distilbert_output.attentions,
)
@add_start_docstrings(
"""
DistilBert Model transformer with a sequence classification/regression head on top (a linear layer on top of the
pooled output) e.g. for GLUE tasks.
""",
FLAX_DISTILBERT_START_DOCSTRING,
)
class FlaxDistilBertForSequenceClassification(FlaxDistilBertPreTrainedModel):
module_class = FlaxDistilBertForSequenceClassificationModule
append_call_sample_docstring(
FlaxDistilBertForSequenceClassification,
_CHECKPOINT_FOR_DOC,
FlaxSequenceClassifierOutput,
_CONFIG_FOR_DOC,
)
class FlaxDistilBertForMultipleChoiceModule(nn.Module):
config: DistilBertConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.distilbert = FlaxDistilBertModule(config=self.config, dtype=self.dtype)
self.pre_classifier = nn.Dense(
self.config.dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(stddev=self.config.initializer_range),
)
self.dropout = nn.Dropout(rate=self.config.seq_classif_dropout)
self.classifier = nn.Dense(
1,
dtype=self.dtype,
)
def __call__(
self,
input_ids,
attention_mask,
deterministic: bool = True,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
num_choices = input_ids.shape[1]
input_ids = input_ids.reshape(-1, input_ids.shape[-1]) if input_ids is not None else None
attention_mask = attention_mask.reshape(-1, attention_mask.shape[-1]) if attention_mask is not None else None
# Model
outputs = self.distilbert(
input_ids,
attention_mask,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_state = outputs[0]
pooled_output = hidden_state[:, 0]
pooled_output = self.pre_classifier(pooled_output)
pooled_output = ACT2FN["relu"](pooled_output)
pooled_output = self.dropout(pooled_output, deterministic=deterministic)
logits = self.classifier(pooled_output)
reshaped_logits = logits.reshape(-1, num_choices)
if not return_dict:
return (reshaped_logits,) + outputs[2:]
return FlaxMultipleChoiceModelOutput(
logits=reshaped_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
DistilBert Model with a multiple choice classification head on top (a linear layer on top of the pooled output and
a softmax) e.g. for RocStories/SWAG tasks.
""",
FLAX_DISTILBERT_START_DOCSTRING,
)
class FlaxDistilBertForMultipleChoice(FlaxDistilBertPreTrainedModel):
module_class = FlaxDistilBertForMultipleChoiceModule
overwrite_call_docstring(
FlaxDistilBertForMultipleChoice, DISTILBERT_INPUTS_DOCSTRING.format("batch_size, num_choices, sequence_length")
)
append_call_sample_docstring(
FlaxDistilBertForMultipleChoice,
_CHECKPOINT_FOR_DOC,
FlaxMultipleChoiceModelOutput,
_CONFIG_FOR_DOC,
)
class FlaxDistilBertForTokenClassificationModule(nn.Module):
config: DistilBertConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.distilbert = FlaxDistilBertModule(config=self.config, dtype=self.dtype)
self.dropout = nn.Dropout(rate=self.config.dropout)
self.classifier = nn.Dense(self.config.num_labels, dtype=self.dtype)
def __call__(
self,
input_ids,
attention_mask,
deterministic: bool = True,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# Model
outputs = self.distilbert(
input_ids,
attention_mask,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0]
hidden_states = self.dropout(hidden_states, deterministic=deterministic)
logits = self.classifier(hidden_states)
if not return_dict:
return (logits,) + outputs[1:]
return FlaxTokenClassifierOutput(
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
DistilBert Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g.
for Named-Entity-Recognition (NER) tasks.
""",
FLAX_DISTILBERT_START_DOCSTRING,
)
class FlaxDistilBertForTokenClassification(FlaxDistilBertPreTrainedModel):
module_class = FlaxDistilBertForTokenClassificationModule
append_call_sample_docstring(
FlaxDistilBertForTokenClassification,
_CHECKPOINT_FOR_DOC,
FlaxTokenClassifierOutput,
_CONFIG_FOR_DOC,
)
class FlaxDistilBertForQuestionAnsweringModule(nn.Module):
config: DistilBertConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.distilbert = FlaxDistilBertModule(config=self.config, dtype=self.dtype)
self.qa_outputs = nn.Dense(self.config.num_labels, dtype=self.dtype)
assert self.config.num_labels == 2
self.dropout = nn.Dropout(rate=self.config.qa_dropout)
def __call__(
self,
input_ids,
attention_mask,
deterministic: bool = True,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# Model
distilbert_output = self.distilbert(
input_ids,
attention_mask,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = distilbert_output[0]
hidden_states = self.dropout(hidden_states, deterministic=deterministic)
logits = self.qa_outputs(hidden_states)
start_logits, end_logits = logits.split(self.config.num_labels, axis=-1)
start_logits = start_logits.squeeze(-1)
end_logits = end_logits.squeeze(-1)
if not return_dict:
return (start_logits, end_logits) + distilbert_output[1:]
return FlaxQuestionAnsweringModelOutput(
start_logits=start_logits,
end_logits=end_logits,
hidden_states=distilbert_output.hidden_states,
attentions=distilbert_output.attentions,
)
@add_start_docstrings(
"""
DistilBert Model with a span classification head on top for extractive question-answering tasks like SQuAD (a
linear layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
FLAX_DISTILBERT_START_DOCSTRING,
)
class FlaxDistilBertForQuestionAnswering(FlaxDistilBertPreTrainedModel):
module_class = FlaxDistilBertForQuestionAnsweringModule
append_call_sample_docstring(
FlaxDistilBertForQuestionAnswering,
_CHECKPOINT_FOR_DOC,
FlaxQuestionAnsweringModelOutput,
_CONFIG_FOR_DOC,
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/blenderbot/configuration_blenderbot.py | # coding=utf-8
# Copyright 2021 The Facebook, Inc. and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Blenderbot model configuration"""
from collections import OrderedDict
from typing import Any, Mapping, Optional
from ... import PreTrainedTokenizer
from ...configuration_utils import PretrainedConfig
from ...file_utils import TensorType, is_torch_available
from ...onnx import OnnxConfig, OnnxConfigWithPast, OnnxSeq2SeqConfigWithPast
from ...onnx.utils import compute_effective_axis_dimension
from ...utils import logging
logger = logging.get_logger(__name__)
BLENDERBOT_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"facebook/blenderbot-3B": "https://huggingface.co/facebook/blenderbot-3B/resolve/main/config.json",
# See all Blenderbot models at https://huggingface.co/models?filter=blenderbot
}
class BlenderbotConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`BlenderbotModel`]. It is used to instantiate an
Blenderbot model according to the specified arguments, defining the model architecture. Instantiating a
configuration with the defaults will yield a similar configuration to that of the Blenderbot
[facebook/blenderbot-3B](https://huggingface.co/facebook/blenderbot-3B) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 50265):
Vocabulary size of the Blenderbot model. Defines the number of different tokens that can be represented by
the `inputs_ids` passed when calling [`BlenderbotModel`] or [`TFBlenderbotModel`].
d_model (`int`, *optional*, defaults to 1024):
Dimensionality of the layers and the pooler layer.
encoder_layers (`int`, *optional*, defaults to 12):
Number of encoder layers.
decoder_layers (`int`, *optional*, defaults to 12):
Number of decoder layers.
encoder_attention_heads (`int`, *optional*, defaults to 16):
Number of attention heads for each attention layer in the Transformer encoder.
decoder_attention_heads (`int`, *optional*, defaults to 16):
Number of attention heads for each attention layer in the Transformer decoder.
decoder_ffn_dim (`int`, *optional*, defaults to 4096):
Dimensionality of the "intermediate" (often named feed-forward) layer in decoder.
encoder_ffn_dim (`int`, *optional*, defaults to 4096):
Dimensionality of the "intermediate" (often named feed-forward) layer in decoder.
activation_function (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"silu"` and `"gelu_new"` are supported.
dropout (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_dropout (`float`, *optional*, defaults to 0.0):
The dropout ratio for the attention probabilities.
activation_dropout (`float`, *optional*, defaults to 0.0):
The dropout ratio for activations inside the fully connected layer.
max_position_embeddings (`int`, *optional*, defaults to 128):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
init_std (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
encoder_layerdrop (`float`, *optional*, defaults to 0.0):
The LayerDrop probability for the encoder. See the [LayerDrop paper](see https://arxiv.org/abs/1909.11556)
for more details.
decoder_layerdrop (`float`, *optional*, defaults to 0.0):
The LayerDrop probability for the decoder. See the [LayerDrop paper](see https://arxiv.org/abs/1909.11556)
for more details.
scale_embedding (`bool`, *optional*, defaults to `False`):
Scale embeddings by diving by sqrt(d_model).
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models)
forced_eos_token_id (`int`, *optional*, defaults to 2):
The id of the token to force as the last generated token when `max_length` is reached. Usually set to
`eos_token_id`.
Example:
```python
>>> from transformers import BlenderbotConfig, BlenderbotModel
>>> # Initializing a Blenderbot facebook/blenderbot-3B style configuration
>>> configuration = BlenderbotConfig()
>>> # Initializing a model (with random weights) from the facebook/blenderbot-3B style configuration
>>> model = BlenderbotModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "blenderbot"
keys_to_ignore_at_inference = ["past_key_values"]
attribute_map = {"num_attention_heads": "encoder_attention_heads", "hidden_size": "d_model"}
def __init__(
self,
vocab_size=8008,
max_position_embeddings=128,
encoder_layers=2,
encoder_ffn_dim=10240,
encoder_attention_heads=32,
decoder_layers=24,
decoder_ffn_dim=10240,
decoder_attention_heads=32,
encoder_layerdrop=0.0,
decoder_layerdrop=0.0,
use_cache=True,
is_encoder_decoder=True,
activation_function="gelu",
d_model=2560,
dropout=0.1,
attention_dropout=0.0,
activation_dropout=0.0,
init_std=0.02,
decoder_start_token_id=1,
scale_embedding=False,
pad_token_id=0,
bos_token_id=1,
eos_token_id=2,
encoder_no_repeat_ngram_size=3,
forced_eos_token_id=2,
**kwargs,
):
self.vocab_size = vocab_size
self.max_position_embeddings = max_position_embeddings
self.d_model = d_model
self.encoder_ffn_dim = encoder_ffn_dim
self.encoder_layers = encoder_layers
self.encoder_attention_heads = encoder_attention_heads
self.decoder_ffn_dim = decoder_ffn_dim
self.decoder_layers = decoder_layers
self.decoder_attention_heads = decoder_attention_heads
self.dropout = dropout
self.attention_dropout = attention_dropout
self.activation_dropout = activation_dropout
self.activation_function = activation_function
self.init_std = init_std
self.encoder_layerdrop = encoder_layerdrop
self.decoder_layerdrop = decoder_layerdrop
self.use_cache = use_cache
self.num_hidden_layers = encoder_layers
self.scale_embedding = scale_embedding # scale factor will be sqrt(d_model) if True
super().__init__(
pad_token_id=pad_token_id,
bos_token_id=bos_token_id,
eos_token_id=eos_token_id,
is_encoder_decoder=is_encoder_decoder,
decoder_start_token_id=decoder_start_token_id,
encoder_no_repeat_ngram_size=encoder_no_repeat_ngram_size,
forced_eos_token_id=forced_eos_token_id,
**kwargs,
)
class BlenderbotOnnxConfig(OnnxSeq2SeqConfigWithPast):
@property
def inputs(self) -> Mapping[str, Mapping[int, str]]:
if self.task in ["default", "seq2seq-lm"]:
common_inputs = OrderedDict(
[
("input_ids", {0: "batch", 1: "encoder_sequence"}),
("attention_mask", {0: "batch", 1: "encoder_sequence"}),
]
)
if self.use_past:
common_inputs["decoder_input_ids"] = {0: "batch"}
common_inputs["decoder_attention_mask"] = {0: "batch", 1: "past_decoder_sequence + sequence"}
else:
common_inputs["decoder_input_ids"] = {0: "batch", 1: "decoder_sequence"}
common_inputs["decoder_attention_mask"] = {0: "batch", 1: "decoder_sequence"}
if self.use_past:
self.fill_with_past_key_values_(common_inputs, direction="inputs")
elif self.task == "causal-lm":
common_inputs = OrderedDict(
[
("input_ids", {0: "batch", 1: "encoder_sequence"}),
("attention_mask", {0: "batch", 1: "encoder_sequence"}),
]
)
if self.use_past:
_, num_decoder_layers = self.num_layers
for i in range(num_decoder_layers):
common_inputs[f"past_key_values.{i}.key"] = {0: "batch", 2: "past_sequence + sequence"}
common_inputs[f"past_key_values.{i}.value"] = {0: "batch", 2: "past_sequence + sequence"}
else:
common_inputs = OrderedDict(
[
("input_ids", {0: "batch", 1: "encoder_sequence"}),
("attention_mask", {0: "batch", 1: "encoder_sequence"}),
("decoder_input_ids", {0: "batch", 1: "decoder_sequence"}),
("decoder_attention_mask", {0: "batch", 1: "decoder_sequence"}),
]
)
return common_inputs
@property
# Copied from transformers.models.bart.configuration_bart.BartOnnxConfig.outputs
def outputs(self) -> Mapping[str, Mapping[int, str]]:
if self.task in ["default", "seq2seq-lm"]:
common_outputs = super().outputs
else:
common_outputs = super(OnnxConfigWithPast, self).outputs
if self.use_past:
num_encoder_layers, _ = self.num_layers
for i in range(num_encoder_layers):
common_outputs[f"present.{i}.key"] = {0: "batch", 2: "past_sequence + sequence"}
common_outputs[f"present.{i}.value"] = {0: "batch", 2: "past_sequence + sequence"}
return common_outputs
def _generate_dummy_inputs_for_default_and_seq2seq_lm(
self,
tokenizer: PreTrainedTokenizer,
batch_size: int = -1,
seq_length: int = -1,
is_pair: bool = False,
framework: Optional[TensorType] = None,
) -> Mapping[str, Any]:
encoder_inputs = self._generate_dummy_inputs_for_sequence_classification_and_question_answering(
tokenizer, batch_size, seq_length, is_pair, framework
)
# Generate decoder inputs
decoder_seq_length = seq_length if not self.use_past else 1
decoder_inputs = self._generate_dummy_inputs_for_sequence_classification_and_question_answering(
tokenizer, batch_size, decoder_seq_length, is_pair, framework
)
decoder_inputs = {f"decoder_{name}": tensor for name, tensor in decoder_inputs.items()}
common_inputs = dict(**encoder_inputs, **decoder_inputs)
if self.use_past:
if not is_torch_available():
raise ValueError("Cannot generate dummy past_keys inputs without PyTorch installed.")
else:
import torch
batch, encoder_seq_length = common_inputs["input_ids"].shape
decoder_seq_length = common_inputs["decoder_input_ids"].shape[1]
num_encoder_attention_heads, num_decoder_attention_heads = self.num_attention_heads
encoder_shape = (
batch,
num_encoder_attention_heads,
encoder_seq_length,
self._config.hidden_size // num_encoder_attention_heads,
)
decoder_past_length = decoder_seq_length
decoder_shape = (
batch,
num_decoder_attention_heads,
decoder_past_length,
self._config.hidden_size // num_decoder_attention_heads,
)
common_inputs["decoder_attention_mask"] = torch.cat(
[common_inputs["decoder_attention_mask"], torch.ones(batch, decoder_past_length)], dim=1
)
common_inputs["past_key_values"] = []
_, num_decoder_layers = self.num_layers
for _ in range(num_decoder_layers):
common_inputs["past_key_values"].append(
(
torch.zeros(decoder_shape),
torch.zeros(decoder_shape),
torch.zeros(encoder_shape),
torch.zeros(encoder_shape),
)
)
return common_inputs
def _generate_dummy_inputs_for_causal_lm(
self,
tokenizer: PreTrainedTokenizer,
batch_size: int = -1,
seq_length: int = -1,
is_pair: bool = False,
framework: Optional[TensorType] = None,
) -> Mapping[str, Any]:
common_inputs = self._generate_dummy_inputs_for_sequence_classification_and_question_answering(
tokenizer, batch_size, seq_length, is_pair, framework
)
if self.use_past:
if not is_torch_available():
raise ValueError("Cannot generate dummy past_keys inputs without PyTorch installed.")
else:
import torch
batch, seqlen = common_inputs["input_ids"].shape
past_key_values_length = seqlen
_, num_decoder_layers = self.num_layers
num_encoder_attention_heads, _ = self.num_attention_heads
past_shape = (
batch,
num_encoder_attention_heads,
past_key_values_length,
self._config.hidden_size // num_encoder_attention_heads,
)
mask_dtype = common_inputs["attention_mask"].dtype
common_inputs["attention_mask"] = torch.cat(
[common_inputs["attention_mask"], torch.ones(batch, past_key_values_length, dtype=mask_dtype)], dim=1
)
common_inputs["past_key_values"] = [
(torch.zeros(past_shape), torch.zeros(past_shape)) for _ in range(num_decoder_layers)
]
return common_inputs
# Copied from transformers.models.bart.configuration_bart.BartOnnxConfig._generate_dummy_inputs_for_sequence_classification_and_question_answering
def _generate_dummy_inputs_for_sequence_classification_and_question_answering(
self,
tokenizer: PreTrainedTokenizer,
batch_size: int = -1,
seq_length: int = -1,
is_pair: bool = False,
framework: Optional[TensorType] = None,
) -> Mapping[str, Any]:
# Copied from OnnxConfig.generate_dummy_inputs
# Did not use super(OnnxConfigWithPast, self).generate_dummy_inputs for code clarity.
# If dynamic axis (-1) we forward with a fixed dimension of 2 samples to avoid optimizations made by ONNX
batch_size = compute_effective_axis_dimension(
batch_size, fixed_dimension=OnnxConfig.default_fixed_batch, num_token_to_add=0
)
# If dynamic axis (-1) we forward with a fixed dimension of 8 tokens to avoid optimizations made by ONNX
token_to_add = tokenizer.num_special_tokens_to_add(is_pair)
seq_length = compute_effective_axis_dimension(
seq_length, fixed_dimension=OnnxConfig.default_fixed_sequence, num_token_to_add=token_to_add
)
# Generate dummy inputs according to compute batch and sequence
dummy_input = [" ".join([tokenizer.unk_token]) * seq_length] * batch_size
common_inputs = dict(tokenizer(dummy_input, return_tensors=framework))
return common_inputs
# Copied from transformers.models.bart.configuration_bart.BartOnnxConfig.generate_dummy_inputs
def generate_dummy_inputs(
self,
tokenizer: PreTrainedTokenizer,
batch_size: int = -1,
seq_length: int = -1,
is_pair: bool = False,
framework: Optional[TensorType] = None,
) -> Mapping[str, Any]:
if self.task in ["default", "seq2seq-lm"]:
common_inputs = self._generate_dummy_inputs_for_default_and_seq2seq_lm(
tokenizer, batch_size=batch_size, seq_length=seq_length, is_pair=is_pair, framework=framework
)
elif self.task == "causal-lm":
common_inputs = self._generate_dummy_inputs_for_causal_lm(
tokenizer, batch_size=batch_size, seq_length=seq_length, is_pair=is_pair, framework=framework
)
else:
common_inputs = self._generate_dummy_inputs_for_sequence_classification_and_question_answering(
tokenizer, batch_size=batch_size, seq_length=seq_length, is_pair=is_pair, framework=framework
)
return common_inputs
# Copied from transformers.models.bart.configuration_bart.BartOnnxConfig._flatten_past_key_values_
def _flatten_past_key_values_(self, flattened_output, name, idx, t):
if self.task in ["default", "seq2seq-lm"]:
flattened_output = super()._flatten_past_key_values_(flattened_output, name, idx, t)
else:
flattened_output = super(OnnxSeq2SeqConfigWithPast, self)._flatten_past_key_values_(
flattened_output, name, idx, t
)
def fill_with_past_key_values_(self, inputs_or_outputs: Mapping[str, Mapping[int, str]], direction: str):
if direction not in ["inputs", "outputs"]:
raise ValueError(f'direction must either be "inputs" or "outputs", but {direction} was given')
name = "past_key_values" if direction == "inputs" else "present"
_, num_decoder_layers = self.num_layers
encoder_sequence = "past_encoder_sequence"
decoder_sequence = "past_decoder_sequence" if direction == "inputs" else "past_decoder_sequence + sequence"
for i in range(num_decoder_layers):
inputs_or_outputs[f"{name}.{i}.decoder.key"] = {0: "batch", 2: decoder_sequence}
inputs_or_outputs[f"{name}.{i}.decoder.value"] = {0: "batch", 2: decoder_sequence}
inputs_or_outputs[f"{name}.{i}.encoder.key"] = {0: "batch", 2: encoder_sequence}
inputs_or_outputs[f"{name}.{i}.encoder.value"] = {0: "batch", 2: encoder_sequence}
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/blenderbot/convert_blenderbot_original_pytorch_checkpoint_to_pytorch.py | # coding=utf-8
# Copyright 2020 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert Blenderbot checkpoint."""
import argparse
import torch
from transformers import BlenderbotConfig, BlenderbotForConditionalGeneration
from transformers.utils import logging
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
PATTERNS = [
["attention", "attn"],
["encoder_attention", "encoder_attn"],
["q_lin", "q_proj"],
["k_lin", "k_proj"],
["v_lin", "v_proj"],
["out_lin", "out_proj"],
["norm_embeddings", "layernorm_embedding"],
["position_embeddings", "embed_positions"],
["embeddings", "embed_tokens"],
["ffn.lin", "fc"],
]
def rename_state_dict_key(k):
if k == "embeddings.weight":
return "shared.weight"
for parlai_name, hf_name in PATTERNS:
k = k.replace(parlai_name, hf_name)
if k.startswith("encoder"):
k = k.replace(".attn", ".self_attn")
k = k.replace("norm1", "self_attn_layer_norm")
k = k.replace("norm2", "final_layer_norm")
elif k.startswith("decoder"):
k = k.replace("norm1", "self_attn_layer_norm")
k = k.replace("norm2", "encoder_attn_layer_norm")
k = k.replace("norm3", "final_layer_norm")
return k
def rename_layernorm_keys(sd):
keys = [
"model.encoder.layernorm_embedding.weight",
"model.encoder.layernorm_embedding.bias",
"model.decoder.layernorm_embedding.weight",
"model.decoder.layernorm_embedding.bias",
]
for k in keys:
v = sd.pop(k)
new_k = k.replace("layernorm_embedding", "layer_norm")
assert new_k not in sd
sd[new_k] = v
IGNORE_KEYS = ["START"]
@torch.no_grad()
def convert_parlai_checkpoint(checkpoint_path, pytorch_dump_folder_path, config_json_path):
"""
Copy/paste/tweak model's weights to our BERT structure.
"""
model = torch.load(checkpoint_path, map_location="cpu")
sd = model["model"]
cfg = BlenderbotConfig.from_json_file(config_json_path)
m = BlenderbotForConditionalGeneration(cfg)
valid_keys = m.model.state_dict().keys()
failures = []
mapping = {}
for k, v in sd.items():
if k in IGNORE_KEYS:
continue
new_k = rename_state_dict_key(k)
if new_k not in valid_keys:
failures.append([k, new_k])
else:
mapping[new_k] = v
if cfg.normalize_before: # Blenderbot-3B checkpoints. Rename layernorm_embedding -> layer_norm
rename_layernorm_keys(sd)
m.model.load_state_dict(mapping, strict=True)
m.half()
m.save_pretrained(pytorch_dump_folder_path)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument("--src_path", type=str, help="like blenderbot-model.bin")
parser.add_argument("--save_dir", default="hf_blenderbot", type=str, help="Where to save converted model.")
parser.add_argument(
"--hf_config_json", default="blenderbot-3b-config.json", type=str, help="Path to config to use"
)
args = parser.parse_args()
convert_parlai_checkpoint(args.src_path, args.save_dir, args.hf_config_json)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/blenderbot/tokenization_blenderbot.py | # coding=utf-8
# Copyright 2021 The Facebook Inc. and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization class for Blenderbot."""
import json
import os
from functools import lru_cache
from typing import List, Optional, Tuple
import regex as re
from ...tokenization_utils import AddedToken, PreTrainedTokenizer
from ...utils import logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {
"vocab_file": "vocab.json",
"merges_file": "merges.txt",
"tokenizer_config_file": "tokenizer_config.json",
}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {"facebook/blenderbot-3B": "https://huggingface.co/facebook/blenderbot-3B/resolve/main/vocab.json"},
"merges_file": {"facebook/blenderbot-3B": "https://huggingface.co/facebook/blenderbot-3B/resolve/main/merges.txt"},
"tokenizer_config_file": {
"facebook/blenderbot-3B": "https://huggingface.co/facebook/blenderbot-3B/resolve/main/tokenizer_config.json"
},
}
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {"facebook/blenderbot-3B": 128}
@lru_cache()
# Copied from transformers.models.roberta.tokenization_roberta.bytes_to_unicode
def bytes_to_unicode():
"""
Returns list of utf-8 byte and a mapping to unicode strings. We specifically avoids mapping to whitespace/control
characters the bpe code barfs on.
The reversible bpe codes work on unicode strings. This means you need a large # of unicode characters in your vocab
if you want to avoid UNKs. When you're at something like a 10B token dataset you end up needing around 5K for
decent coverage. This is a significant percentage of your normal, say, 32K bpe vocab. To avoid that, we want lookup
tables between utf-8 bytes and unicode strings.
"""
bs = (
list(range(ord("!"), ord("~") + 1)) + list(range(ord("¡"), ord("¬") + 1)) + list(range(ord("®"), ord("ÿ") + 1))
)
cs = bs[:]
n = 0
for b in range(2**8):
if b not in bs:
bs.append(b)
cs.append(2**8 + n)
n += 1
cs = [chr(n) for n in cs]
return dict(zip(bs, cs))
# Copied from transformers.models.roberta.tokenization_roberta.get_pairs
def get_pairs(word):
"""
Return set of symbol pairs in a word.
Word is represented as tuple of symbols (symbols being variable-length strings).
"""
pairs = set()
prev_char = word[0]
for char in word[1:]:
pairs.add((prev_char, char))
prev_char = char
return pairs
class BlenderbotTokenizer(PreTrainedTokenizer):
"""
Constructs a Blenderbot tokenizer, derived from the GPT-2 tokenizer, using byte-level Byte-Pair-Encoding.
This tokenizer has been trained to treat spaces like parts of the tokens (a bit like sentencepiece) so a word will
be encoded differently whether it is at the beginning of the sentence (without space) or not:
```python
>>> from transformers import BlenderbotTokenizer
>>> tokenizer = BlenderbotTokenizer.from_pretrained("facebook/blenderbot-3B")
>>> tokenizer.add_prefix_space = False
>>> tokenizer("Hello world")["input_ids"]
[47, 921, 86, 1085, 2]
>>> tokenizer(" Hello world")["input_ids"]
[6950, 1085, 2]
```
You can get around that behavior by passing `add_prefix_space=True` when instantiating this tokenizer or when you
call it on some text, but since the model was not pretrained this way, it might yield a decrease in performance.
<Tip>
When used with `is_split_into_words=True`, this tokenizer will add a space before each word (even the first one).
</Tip>
This tokenizer inherits from [`PreTrainedTokenizer`] which contains most of the main methods. Users should refer to
this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
Path to the vocabulary file.
merges_file (`str`):
Path to the merges file.
errors (`str`, *optional*, defaults to `"replace"`):
Paradigm to follow when decoding bytes to UTF-8. See
[bytes.decode](https://docs.python.org/3/library/stdtypes.html#bytes.decode) for more information.
bos_token (`str`, *optional*, defaults to `"<s>"`):
The beginning of sequence token that was used during pretraining. Can be used a sequence classifier token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the beginning of
sequence. The token used is the `cls_token`.
</Tip>
eos_token (`str`, *optional*, defaults to `"</s>"`):
The end of sequence token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the end of sequence.
The token used is the `sep_token`.
</Tip>
sep_token (`str`, *optional*, defaults to `"</s>"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
cls_token (`str`, *optional*, defaults to `"<s>"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
mask_token (`str`, *optional*, defaults to `"<mask>"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
add_prefix_space (`bool`, *optional*, defaults to `False`):
Whether or not to add an initial space to the input. This allows to treat the leading word just as any
other word. (Blenderbot tokenizer detect beginning of words by the preceding space).
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
model_input_names = ["input_ids", "attention_mask"]
# Copied from transformers.models.roberta.tokenization_roberta.RobertaTokenizer.__init__ with Roberta->Blenderbot, RoBERTa->Blenderbot
def __init__(
self,
vocab_file,
merges_file,
errors="replace",
bos_token="<s>",
eos_token="</s>",
sep_token="</s>",
cls_token="<s>",
unk_token="<unk>",
pad_token="<pad>",
mask_token="<mask>",
add_prefix_space=False,
**kwargs,
):
bos_token = AddedToken(bos_token, lstrip=False, rstrip=False) if isinstance(bos_token, str) else bos_token
pad_token = AddedToken(pad_token, lstrip=False, rstrip=False) if isinstance(pad_token, str) else pad_token
eos_token = AddedToken(eos_token, lstrip=False, rstrip=False) if isinstance(eos_token, str) else eos_token
unk_token = AddedToken(unk_token, lstrip=False, rstrip=False) if isinstance(unk_token, str) else unk_token
sep_token = AddedToken(sep_token, lstrip=False, rstrip=False) if isinstance(sep_token, str) else sep_token
cls_token = AddedToken(cls_token, lstrip=False, rstrip=False) if isinstance(cls_token, str) else cls_token
# Mask token behave like a normal word, i.e. include the space before it
mask_token = (
AddedToken(mask_token, lstrip=True, rstrip=False, normalized=False)
if isinstance(mask_token, str)
else mask_token
)
# these special tokens are not part of the vocab.json, let's add them in the correct order
with open(vocab_file, encoding="utf-8") as vocab_handle:
self.encoder = json.load(vocab_handle)
self.decoder = {v: k for k, v in self.encoder.items()}
self.errors = errors # how to handle errors in decoding
self.byte_encoder = bytes_to_unicode()
self.byte_decoder = {v: k for k, v in self.byte_encoder.items()}
with open(merges_file, encoding="utf-8") as merges_handle:
bpe_merges = merges_handle.read().split("\n")[1:-1]
bpe_merges = [tuple(merge.split()) for merge in bpe_merges]
self.bpe_ranks = dict(zip(bpe_merges, range(len(bpe_merges))))
self.cache = {}
self.add_prefix_space = add_prefix_space
# Should have added re.IGNORECASE so BPE merges can happen for capitalized versions of contractions
self.pat = re.compile(r"""'s|'t|'re|'ve|'m|'ll|'d| ?\p{L}+| ?\p{N}+| ?[^\s\p{L}\p{N}]+|\s+(?!\S)|\s+""")
super().__init__(
errors=errors,
bos_token=bos_token,
eos_token=eos_token,
unk_token=unk_token,
sep_token=sep_token,
cls_token=cls_token,
pad_token=pad_token,
mask_token=mask_token,
add_prefix_space=add_prefix_space,
**kwargs,
)
@property
# Copied from transformers.models.roberta.tokenization_roberta.RobertaTokenizer.vocab_size with Roberta->Blenderbot, RoBERTa->Blenderbot
def vocab_size(self):
return len(self.encoder)
# Copied from transformers.models.roberta.tokenization_roberta.RobertaTokenizer.get_vocab with Roberta->Blenderbot, RoBERTa->Blenderbot
def get_vocab(self):
vocab = dict(self.encoder).copy()
vocab.update(self.added_tokens_encoder)
return vocab
# Copied from transformers.models.roberta.tokenization_roberta.RobertaTokenizer.bpe with Roberta->Blenderbot, RoBERTa->Blenderbot
def bpe(self, token):
if token in self.cache:
return self.cache[token]
word = tuple(token)
pairs = get_pairs(word)
if not pairs:
return token
while True:
bigram = min(pairs, key=lambda pair: self.bpe_ranks.get(pair, float("inf")))
if bigram not in self.bpe_ranks:
break
first, second = bigram
new_word = []
i = 0
while i < len(word):
try:
j = word.index(first, i)
except ValueError:
new_word.extend(word[i:])
break
else:
new_word.extend(word[i:j])
i = j
if word[i] == first and i < len(word) - 1 and word[i + 1] == second:
new_word.append(first + second)
i += 2
else:
new_word.append(word[i])
i += 1
new_word = tuple(new_word)
word = new_word
if len(word) == 1:
break
else:
pairs = get_pairs(word)
word = " ".join(word)
self.cache[token] = word
return word
# Copied from transformers.models.roberta.tokenization_roberta.RobertaTokenizer._tokenize with Roberta->Blenderbot, RoBERTa->Blenderbot
def _tokenize(self, text):
"""Tokenize a string."""
bpe_tokens = []
for token in re.findall(self.pat, text):
token = "".join(
self.byte_encoder[b] for b in token.encode("utf-8")
) # Maps all our bytes to unicode strings, avoiding control tokens of the BPE (spaces in our case)
bpe_tokens.extend(bpe_token for bpe_token in self.bpe(token).split(" "))
return bpe_tokens
# Copied from transformers.models.roberta.tokenization_roberta.RobertaTokenizer._convert_token_to_id with Roberta->Blenderbot, RoBERTa->Blenderbot
def _convert_token_to_id(self, token):
"""Converts a token (str) in an id using the vocab."""
return self.encoder.get(token, self.encoder.get(self.unk_token))
# Copied from transformers.models.roberta.tokenization_roberta.RobertaTokenizer._convert_id_to_token with Roberta->Blenderbot, RoBERTa->Blenderbot
def _convert_id_to_token(self, index):
"""Converts an index (integer) in a token (str) using the vocab."""
return self.decoder.get(index)
# Copied from transformers.models.roberta.tokenization_roberta.RobertaTokenizer.convert_tokens_to_string with Roberta->Blenderbot, RoBERTa->Blenderbot
def convert_tokens_to_string(self, tokens):
"""Converts a sequence of tokens (string) in a single string."""
text = "".join(tokens)
text = bytearray([self.byte_decoder[c] for c in text]).decode("utf-8", errors=self.errors)
return text
# Copied from transformers.models.roberta.tokenization_roberta.RobertaTokenizer.save_vocabulary with Roberta->Blenderbot, RoBERTa->Blenderbot
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory")
return
vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
merge_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["merges_file"]
)
with open(vocab_file, "w", encoding="utf-8") as f:
f.write(json.dumps(self.encoder, indent=2, sort_keys=True, ensure_ascii=False) + "\n")
index = 0
with open(merge_file, "w", encoding="utf-8") as writer:
writer.write("#version: 0.2\n")
for bpe_tokens, token_index in sorted(self.bpe_ranks.items(), key=lambda kv: kv[1]):
if index != token_index:
logger.warning(
f"Saving vocabulary to {merge_file}: BPE merge indices are not consecutive."
" Please check that the tokenizer is not corrupted!"
)
index = token_index
writer.write(" ".join(bpe_tokens) + "\n")
index += 1
return vocab_file, merge_file
# Copied from transformers.models.roberta.tokenization_roberta.RobertaTokenizer.get_special_tokens_mask with Roberta->Blenderbot, RoBERTa->Blenderbot
def get_special_tokens_mask(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieve sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer `prepare_for_model` method.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
already_has_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
`List[int]`: A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
return super().get_special_tokens_mask(
token_ids_0=token_ids_0, token_ids_1=token_ids_1, already_has_special_tokens=True
)
if token_ids_1 is None:
return [1] + ([0] * len(token_ids_0)) + [1]
return [1] + ([0] * len(token_ids_0)) + [1, 1] + ([0] * len(token_ids_1)) + [1]
# Copied from transformers.models.roberta.tokenization_roberta.RobertaTokenizer.create_token_type_ids_from_sequences with Roberta->Blenderbot, RoBERTa->Blenderbot
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. Blenderbot does not
make use of token type ids, therefore a list of zeros is returned.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of zeros.
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return len(cls + token_ids_0 + sep) * [0]
return len(cls + token_ids_0 + sep + sep + token_ids_1 + sep) * [0]
# Copied from transformers.models.roberta.tokenization_roberta.RobertaTokenizer.prepare_for_tokenization with Roberta->Blenderbot, RoBERTa->Blenderbot
def prepare_for_tokenization(self, text, is_split_into_words=False, **kwargs):
add_prefix_space = kwargs.pop("add_prefix_space", self.add_prefix_space)
if (is_split_into_words or add_prefix_space) and (len(text) > 0 and not text[0].isspace()):
text = " " + text
return (text, kwargs)
def build_inputs_with_special_tokens(self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None):
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. A Blenderbot sequence has the following format:
- single sequence: ` X </s>`
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added
token_ids_1 (`List[int]`, *optional*):
Will be ignored
Returns:
`List[int]`: list of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
return token_ids_0 + [self.eos_token_id]
@property
def default_chat_template(self):
"""
A very simple chat template that just adds whitespace between messages.
"""
logger.warning_once(
"\nNo chat template is defined for this tokenizer - using the default template "
f"for the {self.__class__.__name__} class. If the default is not appropriate for "
"your model, please set `tokenizer.chat_template` to an appropriate template. "
"See https://huggingface.co/docs/transformers/main/chat_templating for more information.\n"
)
return (
"{% for message in messages %}"
"{% if message['role'] == 'user' %}{{ ' ' }}{% endif %}"
"{{ message['content'] }}"
"{% if not loop.last %}{{ ' ' }}{% endif %}"
"{% endfor %}"
"{{ eos_token }}"
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/blenderbot/modeling_blenderbot.py | # coding=utf-8
# Copyright 2021 The Facebook, Inc. and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch Blenderbot model."""
import copy
import math
import os
import warnings
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import CrossEntropyLoss
from ...activations import ACT2FN
from ...modeling_attn_mask_utils import _prepare_4d_attention_mask, _prepare_4d_causal_attention_mask
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPastAndCrossAttentions,
CausalLMOutputWithCrossAttentions,
Seq2SeqLMOutput,
Seq2SeqModelOutput,
)
from ...modeling_utils import PreTrainedModel
from ...utils import (
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from ..blenderbot_small import BlenderbotSmallForConditionalGeneration, BlenderbotSmallModel
from .configuration_blenderbot import BlenderbotConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "BlenderbotConfig"
_CHECKPOINT_FOR_DOC = "facebook/blenderbot-400M-distill"
BLENDERBOT_PRETRAINED_MODEL_ARCHIVE_LIST = [
"facebook/blenderbot-3B",
# See all Blenderbot models at https://huggingface.co/models?filter=blenderbot
]
# Copied from transformers.models.bart.modeling_bart.shift_tokens_right
def shift_tokens_right(input_ids: torch.Tensor, pad_token_id: int, decoder_start_token_id: int):
"""
Shift input ids one token to the right.
"""
shifted_input_ids = input_ids.new_zeros(input_ids.shape)
shifted_input_ids[:, 1:] = input_ids[:, :-1].clone()
shifted_input_ids[:, 0] = decoder_start_token_id
if pad_token_id is None:
raise ValueError("self.model.config.pad_token_id has to be defined.")
# replace possible -100 values in labels by `pad_token_id`
shifted_input_ids.masked_fill_(shifted_input_ids == -100, pad_token_id)
return shifted_input_ids
class BlenderbotLearnedPositionalEmbedding(nn.Embedding):
"""
This module learns positional embeddings up to a fixed maximum size.
"""
def __init__(self, num_embeddings: int, embedding_dim: int):
super().__init__(num_embeddings, embedding_dim)
def forward(self, input_ids_shape: torch.Size, past_key_values_length: int = 0):
"""`input_ids_shape` is expected to be [bsz x seqlen]."""
bsz, seq_len = input_ids_shape[:2]
positions = torch.arange(
past_key_values_length, past_key_values_length + seq_len, dtype=torch.long, device=self.weight.device
)
return super().forward(positions)
# Copied from transformers.models.bart.modeling_bart.BartAttention with Bart->Blenderbot
class BlenderbotAttention(nn.Module):
"""Multi-headed attention from 'Attention Is All You Need' paper"""
def __init__(
self,
embed_dim: int,
num_heads: int,
dropout: float = 0.0,
is_decoder: bool = False,
bias: bool = True,
is_causal: bool = False,
config: Optional[BlenderbotConfig] = None,
):
super().__init__()
self.embed_dim = embed_dim
self.num_heads = num_heads
self.dropout = dropout
self.head_dim = embed_dim // num_heads
self.config = config
if (self.head_dim * num_heads) != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_heads (got `embed_dim`: {self.embed_dim}"
f" and `num_heads`: {num_heads})."
)
self.scaling = self.head_dim**-0.5
self.is_decoder = is_decoder
self.is_causal = is_causal
self.k_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.v_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.q_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.out_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
def _shape(self, tensor: torch.Tensor, seq_len: int, bsz: int):
return tensor.view(bsz, seq_len, self.num_heads, self.head_dim).transpose(1, 2).contiguous()
def forward(
self,
hidden_states: torch.Tensor,
key_value_states: Optional[torch.Tensor] = None,
past_key_value: Optional[Tuple[torch.Tensor]] = None,
attention_mask: Optional[torch.Tensor] = None,
layer_head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
"""Input shape: Batch x Time x Channel"""
# if key_value_states are provided this layer is used as a cross-attention layer
# for the decoder
is_cross_attention = key_value_states is not None
bsz, tgt_len, _ = hidden_states.size()
# get query proj
query_states = self.q_proj(hidden_states) * self.scaling
# get key, value proj
# `past_key_value[0].shape[2] == key_value_states.shape[1]`
# is checking that the `sequence_length` of the `past_key_value` is the same as
# the provided `key_value_states` to support prefix tuning
if (
is_cross_attention
and past_key_value is not None
and past_key_value[0].shape[2] == key_value_states.shape[1]
):
# reuse k,v, cross_attentions
key_states = past_key_value[0]
value_states = past_key_value[1]
elif is_cross_attention:
# cross_attentions
key_states = self._shape(self.k_proj(key_value_states), -1, bsz)
value_states = self._shape(self.v_proj(key_value_states), -1, bsz)
elif past_key_value is not None:
# reuse k, v, self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
key_states = torch.cat([past_key_value[0], key_states], dim=2)
value_states = torch.cat([past_key_value[1], value_states], dim=2)
else:
# self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
if self.is_decoder:
# if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_states, value_states)
proj_shape = (bsz * self.num_heads, -1, self.head_dim)
query_states = self._shape(query_states, tgt_len, bsz).view(*proj_shape)
key_states = key_states.reshape(*proj_shape)
value_states = value_states.reshape(*proj_shape)
src_len = key_states.size(1)
attn_weights = torch.bmm(query_states, key_states.transpose(1, 2))
if attn_weights.size() != (bsz * self.num_heads, tgt_len, src_len):
raise ValueError(
f"Attention weights should be of size {(bsz * self.num_heads, tgt_len, src_len)}, but is"
f" {attn_weights.size()}"
)
if attention_mask is not None:
if attention_mask.size() != (bsz, 1, tgt_len, src_len):
raise ValueError(
f"Attention mask should be of size {(bsz, 1, tgt_len, src_len)}, but is {attention_mask.size()}"
)
attn_weights = attn_weights.view(bsz, self.num_heads, tgt_len, src_len) + attention_mask
attn_weights = attn_weights.view(bsz * self.num_heads, tgt_len, src_len)
attn_weights = nn.functional.softmax(attn_weights, dim=-1)
if layer_head_mask is not None:
if layer_head_mask.size() != (self.num_heads,):
raise ValueError(
f"Head mask for a single layer should be of size {(self.num_heads,)}, but is"
f" {layer_head_mask.size()}"
)
attn_weights = layer_head_mask.view(1, -1, 1, 1) * attn_weights.view(bsz, self.num_heads, tgt_len, src_len)
attn_weights = attn_weights.view(bsz * self.num_heads, tgt_len, src_len)
if output_attentions:
# this operation is a bit awkward, but it's required to
# make sure that attn_weights keeps its gradient.
# In order to do so, attn_weights have to be reshaped
# twice and have to be reused in the following
attn_weights_reshaped = attn_weights.view(bsz, self.num_heads, tgt_len, src_len)
attn_weights = attn_weights_reshaped.view(bsz * self.num_heads, tgt_len, src_len)
else:
attn_weights_reshaped = None
attn_probs = nn.functional.dropout(attn_weights, p=self.dropout, training=self.training)
attn_output = torch.bmm(attn_probs, value_states)
if attn_output.size() != (bsz * self.num_heads, tgt_len, self.head_dim):
raise ValueError(
f"`attn_output` should be of size {(bsz * self.num_heads, tgt_len, self.head_dim)}, but is"
f" {attn_output.size()}"
)
attn_output = attn_output.view(bsz, self.num_heads, tgt_len, self.head_dim)
attn_output = attn_output.transpose(1, 2)
# Use the `embed_dim` from the config (stored in the class) rather than `hidden_state` because `attn_output` can be
# partitioned across GPUs when using tensor-parallelism.
attn_output = attn_output.reshape(bsz, tgt_len, self.embed_dim)
attn_output = self.out_proj(attn_output)
return attn_output, attn_weights_reshaped, past_key_value
BLENDERBOT_ATTENTION_CLASSES = {"eager": BlenderbotAttention}
# Copied from transformers.models.mbart.modeling_mbart.MBartEncoderLayer with MBart->Blenderbot, MBART->BLENDERBOT
class BlenderbotEncoderLayer(nn.Module):
def __init__(self, config: BlenderbotConfig):
super().__init__()
self.embed_dim = config.d_model
self.self_attn = BLENDERBOT_ATTENTION_CLASSES[config._attn_implementation](
embed_dim=self.embed_dim,
num_heads=config.encoder_attention_heads,
dropout=config.attention_dropout,
config=config,
)
self.self_attn_layer_norm = nn.LayerNorm(self.embed_dim)
self.dropout = config.dropout
self.activation_fn = ACT2FN[config.activation_function]
self.activation_dropout = config.activation_dropout
self.fc1 = nn.Linear(self.embed_dim, config.encoder_ffn_dim)
self.fc2 = nn.Linear(config.encoder_ffn_dim, self.embed_dim)
self.final_layer_norm = nn.LayerNorm(self.embed_dim)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: torch.Tensor,
layer_head_mask: torch.Tensor,
output_attentions: bool = False,
) -> torch.Tensor:
"""
Args:
hidden_states (`torch.FloatTensor`): input to the layer of shape `(batch, seq_len, embed_dim)`
attention_mask (`torch.FloatTensor`): attention mask of size
`(batch, 1, tgt_len, src_len)` where padding elements are indicated by very large negative values.
layer_head_mask (`torch.FloatTensor`): mask for attention heads in a given layer of size
`(encoder_attention_heads,)`.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
"""
residual = hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
hidden_states, attn_weights, _ = self.self_attn(
hidden_states=hidden_states,
attention_mask=attention_mask,
layer_head_mask=layer_head_mask,
output_attentions=output_attentions,
)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
residual = hidden_states
hidden_states = self.final_layer_norm(hidden_states)
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = nn.functional.dropout(hidden_states, p=self.activation_dropout, training=self.training)
hidden_states = self.fc2(hidden_states)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
if hidden_states.dtype == torch.float16 and (
torch.isinf(hidden_states).any() or torch.isnan(hidden_states).any()
):
clamp_value = torch.finfo(hidden_states.dtype).max - 1000
hidden_states = torch.clamp(hidden_states, min=-clamp_value, max=clamp_value)
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_weights,)
return outputs
# Copied from transformers.models.mbart.modeling_mbart.MBartDecoderLayer with MBart->Blenderbot, MBART->BLENDERBOT
class BlenderbotDecoderLayer(nn.Module):
def __init__(self, config: BlenderbotConfig):
super().__init__()
self.embed_dim = config.d_model
self.self_attn = BLENDERBOT_ATTENTION_CLASSES[config._attn_implementation](
embed_dim=self.embed_dim,
num_heads=config.decoder_attention_heads,
dropout=config.attention_dropout,
is_decoder=True,
is_causal=True,
config=config,
)
self.dropout = config.dropout
self.activation_fn = ACT2FN[config.activation_function]
self.activation_dropout = config.activation_dropout
self.self_attn_layer_norm = nn.LayerNorm(self.embed_dim)
self.encoder_attn = BLENDERBOT_ATTENTION_CLASSES[config._attn_implementation](
self.embed_dim,
config.decoder_attention_heads,
dropout=config.attention_dropout,
is_decoder=True,
config=config,
)
self.encoder_attn_layer_norm = nn.LayerNorm(self.embed_dim)
self.fc1 = nn.Linear(self.embed_dim, config.decoder_ffn_dim)
self.fc2 = nn.Linear(config.decoder_ffn_dim, self.embed_dim)
self.final_layer_norm = nn.LayerNorm(self.embed_dim)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
layer_head_mask: Optional[torch.Tensor] = None,
cross_attn_layer_head_mask: Optional[torch.Tensor] = None,
past_key_value: Optional[Tuple[torch.Tensor]] = None,
output_attentions: Optional[bool] = False,
use_cache: Optional[bool] = True,
) -> torch.Tensor:
"""
Args:
hidden_states (`torch.FloatTensor`): input to the layer of shape `(batch, seq_len, embed_dim)`
attention_mask (`torch.FloatTensor`): attention mask of size
`(batch, 1, tgt_len, src_len)` where padding elements are indicated by very large negative values.
encoder_hidden_states (`torch.FloatTensor`):
cross attention input to the layer of shape `(batch, seq_len, embed_dim)`
encoder_attention_mask (`torch.FloatTensor`): encoder attention mask of size
`(batch, 1, tgt_len, src_len)` where padding elements are indicated by very large negative values.
layer_head_mask (`torch.FloatTensor`): mask for attention heads in a given layer of size
`(encoder_attention_heads,)`.
cross_attn_layer_head_mask (`torch.FloatTensor`): mask for cross-attention heads in a given layer of
size `(decoder_attention_heads,)`.
past_key_value (`Tuple(torch.FloatTensor)`): cached past key and value projection states
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
"""
residual = hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
# Self Attention
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
# add present self-attn cache to positions 1,2 of present_key_value tuple
hidden_states, self_attn_weights, present_key_value = self.self_attn(
hidden_states=hidden_states,
past_key_value=self_attn_past_key_value,
attention_mask=attention_mask,
layer_head_mask=layer_head_mask,
output_attentions=output_attentions,
)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
# Cross-Attention Block
cross_attn_present_key_value = None
cross_attn_weights = None
if encoder_hidden_states is not None:
residual = hidden_states
hidden_states = self.encoder_attn_layer_norm(hidden_states)
# cross_attn cached key/values tuple is at positions 3,4 of present_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
hidden_states, cross_attn_weights, cross_attn_present_key_value = self.encoder_attn(
hidden_states=hidden_states,
key_value_states=encoder_hidden_states,
attention_mask=encoder_attention_mask,
layer_head_mask=cross_attn_layer_head_mask,
past_key_value=cross_attn_past_key_value,
output_attentions=output_attentions,
)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
# add cross-attn to positions 3,4 of present_key_value tuple
present_key_value = present_key_value + cross_attn_present_key_value
# Fully Connected
residual = hidden_states
hidden_states = self.final_layer_norm(hidden_states)
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = nn.functional.dropout(hidden_states, p=self.activation_dropout, training=self.training)
hidden_states = self.fc2(hidden_states)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
outputs = (hidden_states,)
if output_attentions:
outputs += (self_attn_weights, cross_attn_weights)
if use_cache:
outputs += (present_key_value,)
return outputs
class BlenderbotPreTrainedModel(PreTrainedModel):
config_class = BlenderbotConfig
base_model_prefix = "model"
supports_gradient_checkpointing = True
def _init_weights(self, module):
std = self.config.init_std
if isinstance(module, nn.Linear):
module.weight.data.normal_(mean=0.0, std=std)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=std)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
@property
def dummy_inputs(self):
pad_token = self.config.pad_token_id
input_ids = torch.tensor([[0, 6, 10, 4, 2], [0, 8, 12, 2, pad_token]], device=self.device)
dummy_inputs = {
"attention_mask": input_ids.ne(pad_token),
"input_ids": input_ids,
"decoder_input_ids": input_ids,
}
return dummy_inputs
BLENDERBOT_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`BlenderbotConfig`]):
Model configuration class with all the parameters of the model. Initializing with a config file does not
load the weights associated with the model, only the configuration. Check out the
[`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
BLENDERBOT_GENERATION_EXAMPLE = r"""
Conversation example:
```python
>>> from transformers import AutoTokenizer, BlenderbotForConditionalGeneration
>>> mname = "facebook/blenderbot-400M-distill"
>>> model = BlenderbotForConditionalGeneration.from_pretrained(mname)
>>> tokenizer = AutoTokenizer.from_pretrained(mname)
>>> UTTERANCE = "My friends are cool but they eat too many carbs."
>>> print("Human: ", UTTERANCE)
Human: My friends are cool but they eat too many carbs.
>>> inputs = tokenizer([UTTERANCE], return_tensors="pt")
>>> reply_ids = model.generate(**inputs)
>>> print("Bot: ", tokenizer.batch_decode(reply_ids, skip_special_tokens=True)[0])
Bot: That's unfortunate. Are they trying to lose weight or are they just trying to be healthier?
>>> REPLY = "I'm not sure"
>>> print("Human: ", REPLY)
Human: I'm not sure
>>> NEXT_UTTERANCE = (
... "My friends are cool but they eat too many carbs.</s> <s>That's unfortunate. "
... "Are they trying to lose weight or are they just trying to be healthier?</s> "
... "<s> I'm not sure."
... )
>>> inputs = tokenizer([NEXT_UTTERANCE], return_tensors="pt")
>>> next_reply_ids = model.generate(**inputs)
>>> print("Bot: ", tokenizer.batch_decode(next_reply_ids, skip_special_tokens=True)[0])
Bot: I see. Well, it's good that they're trying to change their eating habits.
```
"""
BLENDERBOT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
decoder_input_ids (`torch.LongTensor` of shape `(batch_size, target_sequence_length)`, *optional*):
Indices of decoder input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are decoder input IDs?](../glossary#decoder-input-ids)
Blenderbot uses the `bos_token_id` as the starting token for `decoder_input_ids` generation. If
`past_key_values` is used, optionally only the last `decoder_input_ids` have to be input (see
`past_key_values`).
decoder_attention_mask (`torch.LongTensor` of shape `(batch_size, target_sequence_length)`, *optional*):
Default behavior: generate a tensor that ignores pad tokens in `decoder_input_ids`. Causal mask will also
be used by default.
head_mask (`torch.Tensor` of shape `(encoder_layers, encoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules in the encoder. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
decoder_head_mask (`torch.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules in the decoder. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
cross_attn_head_mask (`torch.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the cross-attention modules in the decoder. Mask values selected in `[0,
1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
encoder_outputs (`tuple(tuple(torch.FloatTensor)`, *optional*):
Tuple consists of (`last_hidden_state`, *optional*: `hidden_states`, *optional*: `attentions`)
`last_hidden_state` of shape `(batch_size, sequence_length, hidden_size)`, *optional*) is a sequence of
hidden-states at the output of the last layer of the encoder. Used in the cross-attention of the decoder.
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of shape
`(batch_size, num_heads, sequence_length, embed_size_per_head)`) and 2 additional tensors of shape
`(batch_size, num_heads, encoder_sequence_length, embed_size_per_head)`.
Contains pre-computed hidden-states (key and values in the self-attention blocks and in the cross-attention
blocks) that can be used (see `past_key_values` input) to speed up sequential decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert `input_ids` indices into associated vectors
than the model's internal embedding lookup matrix.
decoder_inputs_embeds (`torch.FloatTensor` of shape `(batch_size, target_sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `decoder_input_ids` you can choose to directly pass an embedded
representation. If `past_key_values` is used, optionally only the last `decoder_inputs_embeds` have to be
input (see `past_key_values`). This is useful if you want more control over how to convert
`decoder_input_ids` indices into associated vectors than the model's internal embedding lookup matrix.
If `decoder_input_ids` and `decoder_inputs_embeds` are both unset, `decoder_inputs_embeds` takes the value
of `inputs_embeds`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
class BlenderbotEncoder(BlenderbotPreTrainedModel):
"""
Transformer encoder consisting of *config.encoder_layers* self attention layers. Each layer is a
[`BlenderbotEncoderLayer`].
Args:
config: BlenderbotConfig
embed_tokens (nn.Embedding): output embedding
"""
def __init__(self, config: BlenderbotConfig, embed_tokens: Optional[nn.Embedding] = None):
super().__init__(config)
self.dropout = config.dropout
self.layerdrop = config.encoder_layerdrop
embed_dim = config.d_model
self.padding_idx = config.pad_token_id
self.max_source_positions = config.max_position_embeddings
self.embed_scale = math.sqrt(embed_dim) if config.scale_embedding else 1.0
if embed_tokens is not None:
self.embed_tokens = embed_tokens
else:
self.embed_tokens = nn.Embedding(config.vocab_size, embed_dim, self.padding_idx)
self.embed_positions = BlenderbotLearnedPositionalEmbedding(
config.max_position_embeddings,
embed_dim,
)
self.layers = nn.ModuleList([BlenderbotEncoderLayer(config) for _ in range(config.encoder_layers)])
self.layer_norm = nn.LayerNorm(config.d_model)
self.gradient_checkpointing = False
# Initialize weights and apply final processing
self.post_init()
def forward(
self,
input_ids=None,
attention_mask=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you
provide it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
head_mask (`torch.Tensor` of shape `(encoder_layers, encoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert `input_ids` indices into associated vectors
than the model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# retrieve input_ids and inputs_embeds
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
self.warn_if_padding_and_no_attention_mask(input_ids, attention_mask)
input_shape = input_ids.size()
input_ids = input_ids.view(-1, input_shape[-1])
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if inputs_embeds is None:
inputs_embeds = self.embed_tokens(input_ids) * self.embed_scale
embed_pos = self.embed_positions(input_shape)
hidden_states = inputs_embeds + embed_pos
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
# expand attention_mask
if attention_mask is not None:
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
attention_mask = _prepare_4d_attention_mask(attention_mask, inputs_embeds.dtype)
encoder_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
# check if head_mask has a correct number of layers specified if desired
if head_mask is not None:
if head_mask.size()[0] != len(self.layers):
raise ValueError(
f"The head_mask should be specified for {len(self.layers)} layers, but it is for"
f" {head_mask.size()[0]}."
)
for idx, encoder_layer in enumerate(self.layers):
if output_hidden_states:
encoder_states = encoder_states + (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
to_drop = False
if self.training:
dropout_probability = torch.rand([])
if dropout_probability < self.layerdrop: # skip the layer
to_drop = True
if to_drop:
layer_outputs = (None, None)
else:
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
encoder_layer.__call__,
hidden_states,
attention_mask,
(head_mask[idx] if head_mask is not None else None),
output_attentions,
)
else:
layer_outputs = encoder_layer(
hidden_states,
attention_mask,
layer_head_mask=(head_mask[idx] if head_mask is not None else None),
output_attentions=output_attentions,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
# add final layer norm
hidden_states = self.layer_norm(hidden_states)
if output_hidden_states:
encoder_states = encoder_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, encoder_states, all_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=hidden_states, hidden_states=encoder_states, attentions=all_attentions
)
class BlenderbotDecoder(BlenderbotPreTrainedModel):
"""
Transformer decoder consisting of *config.decoder_layers* layers. Each layer is a [`BlenderbotDecoderLayer`]
Args:
config: BlenderbotConfig
embed_tokens (nn.Embedding): output embedding
"""
def __init__(self, config: BlenderbotConfig, embed_tokens: Optional[nn.Embedding] = None):
super().__init__(config)
self.dropout = config.dropout
self.layerdrop = config.decoder_layerdrop
self.padding_idx = config.pad_token_id
self.max_target_positions = config.max_position_embeddings
self.embed_scale = math.sqrt(config.d_model) if config.scale_embedding else 1.0
if embed_tokens is not None:
self.embed_tokens = embed_tokens
else:
self.embed_tokens = nn.Embedding(config.vocab_size, config.d_model, self.padding_idx)
self.embed_positions = BlenderbotLearnedPositionalEmbedding(
config.max_position_embeddings,
config.d_model,
)
self.layers = nn.ModuleList([BlenderbotDecoderLayer(config) for _ in range(config.decoder_layers)])
self.layer_norm = nn.LayerNorm(config.d_model)
self.gradient_checkpointing = False
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.embed_tokens
def set_input_embeddings(self, value):
self.embed_tokens = value
def forward(
self,
input_ids=None,
attention_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
head_mask=None,
cross_attn_head_mask=None,
past_key_values=None,
inputs_embeds=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you
provide it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, encoder_sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention
of the decoder.
encoder_attention_mask (`torch.LongTensor` of shape `(batch_size, encoder_sequence_length)`, *optional*):
Mask to avoid performing cross-attention on padding tokens indices of encoder input_ids. Mask values
selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
head_mask (`torch.Tensor` of shape `(encoder_layers, encoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules in the encoder. Mask values selected in `[0,
1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
cross_attn_head_mask (`torch.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the cross-attention modules in the decoder to avoid performing
cross-attention on hidden heads. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of
shape `(batch_size, num_heads, sequence_length, embed_size_per_head)`) and 2 additional tensors of
shape `(batch_size, num_heads, encoder_sequence_length, embed_size_per_head)`.
Contains pre-computed hidden-states (key and values in the self-attention blocks and in the
cross-attention blocks) that can be used (see `past_key_values` input) to speed up sequential decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those
that don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of
all `decoder_input_ids` of shape `(batch_size, sequence_length)`.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert `input_ids` indices into associated vectors
than the model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# retrieve input_ids and inputs_embeds
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both decoder_input_ids and decoder_inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
input_ids = input_ids.view(-1, input_shape[-1])
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either decoder_input_ids or decoder_inputs_embeds")
# past_key_values_length
past_key_values_length = past_key_values[0][0].shape[2] if past_key_values is not None else 0
if inputs_embeds is None:
inputs_embeds = self.embed_tokens(input_ids) * self.embed_scale
attention_mask = _prepare_4d_causal_attention_mask(
attention_mask, input_shape, inputs_embeds, past_key_values_length
)
# expand encoder attention mask
if encoder_hidden_states is not None and encoder_attention_mask is not None:
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
encoder_attention_mask = _prepare_4d_attention_mask(
encoder_attention_mask, inputs_embeds.dtype, tgt_len=input_shape[-1]
)
# embed positions
positions = self.embed_positions(input_shape, past_key_values_length)
hidden_states = inputs_embeds + positions
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
# decoder layers
all_hidden_states = () if output_hidden_states else None
all_self_attns = () if output_attentions else None
all_cross_attentions = () if (output_attentions and encoder_hidden_states is not None) else None
next_decoder_cache = () if use_cache else None
# check if head_mask/cross_attn_head_mask has a correct number of layers specified if desired
for attn_mask, mask_name in zip([head_mask, cross_attn_head_mask], ["head_mask", "cross_attn_head_mask"]):
if attn_mask is not None:
if attn_mask.size()[0] != len(self.layers):
raise ValueError(
f"The `{mask_name}` should be specified for {len(self.layers)} layers, but it is for"
f" {head_mask.size()[0]}."
)
for idx, decoder_layer in enumerate(self.layers):
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
if output_hidden_states:
all_hidden_states += (hidden_states,)
if self.training:
dropout_probability = torch.rand([])
if dropout_probability < self.layerdrop:
continue
past_key_value = past_key_values[idx] if past_key_values is not None else None
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
decoder_layer.__call__,
hidden_states,
attention_mask,
encoder_hidden_states,
encoder_attention_mask,
head_mask[idx] if head_mask is not None else None,
cross_attn_head_mask[idx] if cross_attn_head_mask is not None else None,
None,
output_attentions,
use_cache,
)
else:
layer_outputs = decoder_layer(
hidden_states,
attention_mask=attention_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
layer_head_mask=(head_mask[idx] if head_mask is not None else None),
cross_attn_layer_head_mask=(
cross_attn_head_mask[idx] if cross_attn_head_mask is not None else None
),
past_key_value=past_key_value,
output_attentions=output_attentions,
use_cache=use_cache,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[3 if output_attentions else 1],)
if output_attentions:
all_self_attns += (layer_outputs[1],)
if encoder_hidden_states is not None:
all_cross_attentions += (layer_outputs[2],)
# add final layer norm
hidden_states = self.layer_norm(hidden_states)
# add hidden states from the last decoder layer
if output_hidden_states:
all_hidden_states += (hidden_states,)
next_cache = next_decoder_cache if use_cache else None
if not return_dict:
return tuple(
v
for v in [hidden_states, next_cache, all_hidden_states, all_self_attns, all_cross_attentions]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_cache,
hidden_states=all_hidden_states,
attentions=all_self_attns,
cross_attentions=all_cross_attentions,
)
@add_start_docstrings(
"The bare Blenderbot Model outputting raw hidden-states without any specific head on top.",
BLENDERBOT_START_DOCSTRING,
)
class BlenderbotModel(BlenderbotPreTrainedModel):
_tied_weights_keys = ["decoder.embed_tokens.weight", "encoder.embed_tokens.weight"]
def __init__(self, config: BlenderbotConfig):
super().__init__(config)
padding_idx, vocab_size = config.pad_token_id, config.vocab_size
self.shared = nn.Embedding(vocab_size, config.d_model, padding_idx)
self.encoder = BlenderbotEncoder(config, self.shared)
self.decoder = BlenderbotDecoder(config, self.shared)
# Initialize weights and apply final processing
self.post_init()
@classmethod
def from_pretrained(cls, pretrained_model_name_or_path: Optional[Union[str, os.PathLike]], *model_args, **kwargs):
if pretrained_model_name_or_path == "facebook/blenderbot-90M":
warnings.warn(
"The checkpoint `facebook/blenderbot-90M` is deprecated. In the future, please use the identical"
" checkpoint `facebook/small_blenderbot-90M` with"
" `BlenderbotSmallModel.from_pretrained('facebook/small_blenderbot-90M')` instead.",
FutureWarning,
)
return BlenderbotSmallModel.from_pretrained(pretrained_model_name_or_path)
return super(BlenderbotModel, cls).from_pretrained(pretrained_model_name_or_path, *model_args, **kwargs)
def get_input_embeddings(self):
return self.shared
def set_input_embeddings(self, value):
self.shared = value
self.encoder.embed_tokens = self.shared
self.decoder.embed_tokens = self.shared
def get_encoder(self):
return self.encoder
def get_decoder(self):
return self.decoder
@add_start_docstrings_to_model_forward(BLENDERBOT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=Seq2SeqModelOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
decoder_head_mask: Optional[torch.Tensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[Union[Tuple, BaseModelOutput]] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.Tensor] = None,
decoder_inputs_embeds: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.FloatTensor], Seq2SeqModelOutput]:
r"""
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, BlenderbotModel
>>> model = BlenderbotModel.from_pretrained("facebook/blenderbot-400M-distill")
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/blenderbot-400M-distill")
>>> inputs = tokenizer("Studies have been shown that owning a dog is good for you", return_tensors="pt")
>>> decoder_input_ids = tokenizer("Studies show that", return_tensors="pt").input_ids # Batch size 1
>>> outputs = model(input_ids=inputs.input_ids, decoder_input_ids=decoder_input_ids)
>>> last_hidden_states = outputs.last_hidden_state
>>> list(last_hidden_states.shape)
[1, 6, 1280]
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if encoder_outputs is None:
encoder_outputs = self.encoder(
input_ids=input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
# If the user passed a tuple for encoder_outputs, we wrap it in a BaseModelOutput when return_dict=True
elif return_dict and not isinstance(encoder_outputs, BaseModelOutput):
encoder_outputs = BaseModelOutput(
last_hidden_state=encoder_outputs[0],
hidden_states=encoder_outputs[1] if len(encoder_outputs) > 1 else None,
attentions=encoder_outputs[2] if len(encoder_outputs) > 2 else None,
)
# decoder outputs consists of (dec_features, past_key_value, dec_hidden, dec_attn)
decoder_outputs = self.decoder(
input_ids=decoder_input_ids,
attention_mask=decoder_attention_mask,
encoder_hidden_states=encoder_outputs[0],
encoder_attention_mask=attention_mask,
head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
past_key_values=past_key_values,
inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
if not return_dict:
return decoder_outputs + encoder_outputs
return Seq2SeqModelOutput(
last_hidden_state=decoder_outputs.last_hidden_state,
past_key_values=decoder_outputs.past_key_values,
decoder_hidden_states=decoder_outputs.hidden_states,
decoder_attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
encoder_last_hidden_state=encoder_outputs.last_hidden_state,
encoder_hidden_states=encoder_outputs.hidden_states,
encoder_attentions=encoder_outputs.attentions,
)
@add_start_docstrings(
"The Blenderbot Model with a language modeling head. Can be used for summarization.", BLENDERBOT_START_DOCSTRING
)
class BlenderbotForConditionalGeneration(BlenderbotPreTrainedModel):
base_model_prefix = "model"
_keys_to_ignore_on_load_missing = ["final_logits_bias"]
_tied_weights_keys = ["decoder.embed_tokens.weight", "encoder.embed_tokens.weight", "lm_head.weight"]
def __init__(self, config: BlenderbotConfig):
super().__init__(config)
self.model = BlenderbotModel(config)
self.register_buffer("final_logits_bias", torch.zeros((1, self.model.shared.num_embeddings)))
self.lm_head = nn.Linear(config.d_model, self.model.shared.num_embeddings, bias=False)
# Initialize weights and apply final processing
self.post_init()
@classmethod
def from_pretrained(cls, pretrained_model_name_or_path: Optional[Union[str, os.PathLike]], *model_args, **kwargs):
if pretrained_model_name_or_path == "facebook/blenderbot-90M":
warnings.warn(
"The checkpoint `facebook/blenderbot-90M` is deprecated. In the future, please use the identical"
" checkpoint `facebook/small_blenderbot-90M` with"
" `BlenderbotSmallForConditionalGeneration.from_pretrained('facebook/small_blenderbot-90M')` instead.",
FutureWarning,
)
return BlenderbotSmallForConditionalGeneration.from_pretrained(pretrained_model_name_or_path)
return super(BlenderbotForConditionalGeneration, cls).from_pretrained(
pretrained_model_name_or_path, *model_args, **kwargs
)
def get_encoder(self):
return self.model.get_encoder()
def get_decoder(self):
return self.model.get_decoder()
def resize_token_embeddings(self, new_num_tokens: int, pad_to_multiple_of: Optional[int] = None) -> nn.Embedding:
new_embeddings = super().resize_token_embeddings(new_num_tokens, pad_to_multiple_of)
self._resize_final_logits_bias(new_embeddings.weight.shape[0])
return new_embeddings
def _resize_final_logits_bias(self, new_num_tokens: int) -> None:
old_num_tokens = self.final_logits_bias.shape[-1]
if new_num_tokens <= old_num_tokens:
new_bias = self.final_logits_bias[:, :new_num_tokens]
else:
extra_bias = torch.zeros((1, new_num_tokens - old_num_tokens), device=self.final_logits_bias.device)
new_bias = torch.cat([self.final_logits_bias, extra_bias], dim=1)
self.register_buffer("final_logits_bias", new_bias)
def get_output_embeddings(self):
return self.lm_head
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
@add_start_docstrings_to_model_forward(BLENDERBOT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=Seq2SeqLMOutput, config_class=_CONFIG_FOR_DOC)
@add_end_docstrings(BLENDERBOT_GENERATION_EXAMPLE)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
decoder_head_mask: Optional[torch.Tensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[Union[Tuple, BaseModelOutput]] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.Tensor] = None,
decoder_inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.FloatTensor], Seq2SeqLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should either be in `[0, ...,
config.vocab_size]` or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
(masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
Returns:
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if labels is not None:
if use_cache:
logger.warning("The `use_cache` argument is changed to `False` since `labels` is provided.")
use_cache = False
if decoder_input_ids is None and decoder_inputs_embeds is None:
decoder_input_ids = shift_tokens_right(
labels, self.config.pad_token_id, self.config.decoder_start_token_id
)
outputs = self.model(
input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
encoder_outputs=encoder_outputs,
decoder_attention_mask=decoder_attention_mask,
head_mask=head_mask,
decoder_head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
decoder_inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
lm_logits = self.lm_head(outputs[0]) + self.final_logits_bias
masked_lm_loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
masked_lm_loss = loss_fct(lm_logits.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (lm_logits,) + outputs[1:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return Seq2SeqLMOutput(
loss=masked_lm_loss,
logits=lm_logits,
past_key_values=outputs.past_key_values,
decoder_hidden_states=outputs.decoder_hidden_states,
decoder_attentions=outputs.decoder_attentions,
cross_attentions=outputs.cross_attentions,
encoder_last_hidden_state=outputs.encoder_last_hidden_state,
encoder_hidden_states=outputs.encoder_hidden_states,
encoder_attentions=outputs.encoder_attentions,
)
def prepare_inputs_for_generation(
self,
decoder_input_ids,
past_key_values=None,
attention_mask=None,
head_mask=None,
decoder_head_mask=None,
cross_attn_head_mask=None,
use_cache=None,
encoder_outputs=None,
**kwargs,
):
# cut decoder_input_ids if past is used
if past_key_values is not None:
past_length = past_key_values[0][0].shape[2]
# Some generation methods already pass only the last input ID
if decoder_input_ids.shape[1] > past_length:
remove_prefix_length = past_length
else:
# Default to old behavior: keep only final ID
remove_prefix_length = decoder_input_ids.shape[1] - 1
decoder_input_ids = decoder_input_ids[:, remove_prefix_length:]
return {
"input_ids": None, # encoder_outputs is defined. input_ids not needed
"encoder_outputs": encoder_outputs,
"past_key_values": past_key_values,
"decoder_input_ids": decoder_input_ids,
"attention_mask": attention_mask,
"head_mask": head_mask,
"decoder_head_mask": decoder_head_mask,
"cross_attn_head_mask": cross_attn_head_mask,
"use_cache": use_cache, # change this to avoid caching (presumably for debugging)
}
@staticmethod
def _reorder_cache(past_key_values, beam_idx):
reordered_past = ()
for layer_past in past_key_values:
# cached cross_attention states don't have to be reordered -> they are always the same
reordered_past += (
tuple(past_state.index_select(0, beam_idx.to(past_state.device)) for past_state in layer_past[:2])
+ layer_past[2:],
)
return reordered_past
# Copied from transformers.models.bart.modeling_bart.BartDecoderWrapper with Bart->Blenderbot
class BlenderbotDecoderWrapper(BlenderbotPreTrainedModel):
"""
This wrapper class is a helper class to correctly load pretrained checkpoints when the causal language model is
used in combination with the [`EncoderDecoderModel`] framework.
"""
def __init__(self, config):
super().__init__(config)
self.decoder = BlenderbotDecoder(config)
def forward(self, *args, **kwargs):
return self.decoder(*args, **kwargs)
# Copied from transformers.models.bart.modeling_bart.BartForCausalLM with Bart->Blenderbot, facebook/bart-base->facebook/blenderbot-400M-distill
class BlenderbotForCausalLM(BlenderbotPreTrainedModel):
_tied_weights_keys = ["lm_head.weight"]
def __init__(self, config):
config = copy.deepcopy(config)
config.is_decoder = True
config.is_encoder_decoder = False
super().__init__(config)
self.model = BlenderbotDecoderWrapper(config)
self.lm_head = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.model.decoder.embed_tokens
def set_input_embeddings(self, value):
self.model.decoder.embed_tokens = value
def get_output_embeddings(self):
return self.lm_head
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
def set_decoder(self, decoder):
self.model.decoder = decoder
def get_decoder(self):
return self.model.decoder
@replace_return_docstrings(output_type=CausalLMOutputWithCrossAttentions, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: torch.LongTensor = None,
attention_mask: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.Tensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, CausalLMOutputWithCrossAttentions]:
r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you
provide it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention
if the model is configured as a decoder.
encoder_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used
in the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
head_mask (`torch.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
cross_attn_head_mask (`torch.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the cross-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of
shape `(batch_size, num_heads, sequence_length, embed_size_per_head)`) and 2 additional tensors of
shape `(batch_size, num_heads, encoder_sequence_length, embed_size_per_head)`. The two additional
tensors are only required when the model is used as a decoder in a Sequence to Sequence model.
Contains pre-computed hidden-states (key and values in the self-attention blocks and in the
cross-attention blocks) that can be used (see `past_key_values` input) to speed up sequential decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those
that don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of
all `decoder_input_ids` of shape `(batch_size, sequence_length)`.
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should either be in `[0, ...,
config.vocab_size]` or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
(masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding
(see `past_key_values`).
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, BlenderbotForCausalLM
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/blenderbot-400M-distill")
>>> model = BlenderbotForCausalLM.from_pretrained("facebook/blenderbot-400M-distill", add_cross_attention=False)
>>> assert model.config.is_decoder, f"{model.__class__} has to be configured as a decoder."
>>> inputs = tokenizer("Hello, my dog is cute", return_tensors="pt")
>>> outputs = model(**inputs)
>>> logits = outputs.logits
>>> expected_shape = [1, inputs.input_ids.shape[-1], model.config.vocab_size]
>>> list(logits.shape) == expected_shape
True
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# decoder outputs consists of (dec_features, layer_state, dec_hidden, dec_attn)
outputs = self.model.decoder(
input_ids=input_ids,
attention_mask=attention_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
head_mask=head_mask,
cross_attn_head_mask=cross_attn_head_mask,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
logits = self.lm_head(outputs[0])
loss = None
if labels is not None:
labels = labels.to(logits.device)
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[1:]
return (loss,) + output if loss is not None else output
return CausalLMOutputWithCrossAttentions(
loss=loss,
logits=logits,
past_key_values=outputs.past_key_values,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
def prepare_inputs_for_generation(
self, input_ids, past_key_values=None, attention_mask=None, use_cache=None, **kwargs
):
# if model is used as a decoder in encoder-decoder model, the decoder attention mask is created on the fly
if attention_mask is None:
attention_mask = input_ids.new_ones(input_ids.shape)
if past_key_values:
past_length = past_key_values[0][0].shape[2]
# Some generation methods already pass only the last input ID
if input_ids.shape[1] > past_length:
remove_prefix_length = past_length
else:
# Default to old behavior: keep only final ID
remove_prefix_length = input_ids.shape[1] - 1
input_ids = input_ids[:, remove_prefix_length:]
# first step, decoder_cached_states are empty
return {
"input_ids": input_ids, # encoder_outputs is defined. input_ids not needed
"attention_mask": attention_mask,
"past_key_values": past_key_values,
"use_cache": use_cache,
}
@staticmethod
def _reorder_cache(past_key_values, beam_idx):
reordered_past = ()
for layer_past in past_key_values:
reordered_past += (
tuple(past_state.index_select(0, beam_idx.to(past_state.device)) for past_state in layer_past),
)
return reordered_past
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/blenderbot/modeling_tf_blenderbot.py | # coding=utf-8
# Copyright 2021 The Facebook, Inc and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" TF 2.0 Blenderbot model."""
from __future__ import annotations
import os
import random
import warnings
from typing import List, Optional, Tuple, Union
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFBaseModelOutputWithPastAndCrossAttentions,
TFSeq2SeqLMOutput,
TFSeq2SeqModelOutput,
)
# Public API
from ...modeling_tf_utils import (
TFCausalLanguageModelingLoss,
TFPreTrainedModel,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import check_embeddings_within_bounds, shape_list, stable_softmax
from ...utils import (
add_code_sample_docstrings,
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_blenderbot import BlenderbotConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "facebook/blenderbot-400M-distill"
_CONFIG_FOR_DOC = "BlenderbotConfig"
LARGE_NEGATIVE = -1e8
# Copied from transformers.models.bart.modeling_tf_bart.shift_tokens_right
def shift_tokens_right(input_ids: tf.Tensor, pad_token_id: int, decoder_start_token_id: int):
pad_token_id = tf.cast(pad_token_id, input_ids.dtype)
decoder_start_token_id = tf.cast(decoder_start_token_id, input_ids.dtype)
start_tokens = tf.fill(
(shape_list(input_ids)[0], 1), tf.convert_to_tensor(decoder_start_token_id, input_ids.dtype)
)
shifted_input_ids = tf.concat([start_tokens, input_ids[:, :-1]], -1)
# replace possible -100 values in labels by `pad_token_id`
shifted_input_ids = tf.where(
shifted_input_ids == -100,
tf.fill(shape_list(shifted_input_ids), tf.convert_to_tensor(pad_token_id, input_ids.dtype)),
shifted_input_ids,
)
# "Verify that `labels` has only positive values and -100"
assert_gte0 = tf.debugging.assert_greater_equal(shifted_input_ids, tf.constant(0, dtype=input_ids.dtype))
# Make sure the assertion op is called by wrapping the result in an identity no-op
with tf.control_dependencies([assert_gte0]):
shifted_input_ids = tf.identity(shifted_input_ids)
return shifted_input_ids
# Copied from transformers.models.bart.modeling_tf_bart._make_causal_mask
def _make_causal_mask(input_ids_shape: tf.TensorShape, past_key_values_length: int = 0):
"""
Make causal mask used for bi-directional self-attention.
"""
bsz = input_ids_shape[0]
tgt_len = input_ids_shape[1]
mask = tf.ones((tgt_len, tgt_len)) * LARGE_NEGATIVE
mask_cond = tf.range(shape_list(mask)[-1])
mask = tf.where(mask_cond < tf.reshape(mask_cond + 1, (shape_list(mask)[-1], 1)), 0.0, mask)
if past_key_values_length > 0:
mask = tf.concat([tf.zeros((tgt_len, past_key_values_length)), mask], axis=-1)
return tf.tile(mask[None, None, :, :], (bsz, 1, 1, 1))
# Copied from transformers.models.bart.modeling_tf_bart._expand_mask
def _expand_mask(mask: tf.Tensor, tgt_len: Optional[int] = None):
"""
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
"""
src_len = shape_list(mask)[1]
tgt_len = tgt_len if tgt_len is not None else src_len
one_cst = tf.constant(1.0)
mask = tf.cast(mask, dtype=one_cst.dtype)
expanded_mask = tf.tile(mask[:, None, None, :], (1, 1, tgt_len, 1))
return (one_cst - expanded_mask) * LARGE_NEGATIVE
class TFBlenderbotLearnedPositionalEmbedding(tf.keras.layers.Embedding):
"""
This module learns positional embeddings up to a fixed maximum size.
"""
def __init__(self, num_embeddings: int, embedding_dim: int, **kwargs):
super().__init__(num_embeddings, embedding_dim, **kwargs)
def call(
self, input_shape: tf.TensorShape, past_key_values_length: int = 0, position_ids: tf.Tensor | None = None
):
"""Input is expected to be of size [bsz x seqlen]."""
if position_ids is None:
seq_len = input_shape[1]
position_ids = tf.range(seq_len, delta=1, name="range")
position_ids += past_key_values_length
return super().call(tf.cast(position_ids, dtype=tf.int32))
# Copied from transformers.models.bart.modeling_tf_bart.TFBartAttention with Bart->Blenderbot
class TFBlenderbotAttention(tf.keras.layers.Layer):
"""Multi-headed attention from "Attention Is All You Need"""
def __init__(
self,
embed_dim: int,
num_heads: int,
dropout: float = 0.0,
is_decoder: bool = False,
bias: bool = True,
**kwargs,
):
super().__init__(**kwargs)
self.embed_dim = embed_dim
self.num_heads = num_heads
self.dropout = tf.keras.layers.Dropout(dropout)
self.head_dim = embed_dim // num_heads
if (self.head_dim * num_heads) != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_heads (got `embed_dim`: {self.embed_dim}"
f" and `num_heads`: {num_heads})."
)
self.scaling = self.head_dim**-0.5
self.is_decoder = is_decoder
self.k_proj = tf.keras.layers.Dense(embed_dim, use_bias=bias, name="k_proj")
self.q_proj = tf.keras.layers.Dense(embed_dim, use_bias=bias, name="q_proj")
self.v_proj = tf.keras.layers.Dense(embed_dim, use_bias=bias, name="v_proj")
self.out_proj = tf.keras.layers.Dense(embed_dim, use_bias=bias, name="out_proj")
def _shape(self, tensor: tf.Tensor, seq_len: int, bsz: int):
return tf.transpose(tf.reshape(tensor, (bsz, seq_len, self.num_heads, self.head_dim)), (0, 2, 1, 3))
def call(
self,
hidden_states: tf.Tensor,
key_value_states: tf.Tensor | None = None,
past_key_value: Tuple[Tuple[tf.Tensor]] | None = None,
attention_mask: tf.Tensor | None = None,
layer_head_mask: tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Tuple[tf.Tensor, tf.Tensor | None]:
"""Input shape: Batch x Time x Channel"""
# if key_value_states are provided this layer is used as a cross-attention layer
# for the decoder
is_cross_attention = key_value_states is not None
bsz, tgt_len, embed_dim = shape_list(hidden_states)
# get query proj
query_states = self.q_proj(hidden_states) * self.scaling
# get key, value proj
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_states = past_key_value[0]
value_states = past_key_value[1]
elif is_cross_attention:
# cross_attentions
key_states = self._shape(self.k_proj(key_value_states), -1, bsz)
value_states = self._shape(self.v_proj(key_value_states), -1, bsz)
elif past_key_value is not None:
# reuse k, v, self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
key_states = tf.concat([past_key_value[0], key_states], axis=2)
value_states = tf.concat([past_key_value[1], value_states], axis=2)
else:
# self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
if self.is_decoder:
# if cross_attention save Tuple(tf.Tensor, tf.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(tf.Tensor, tf.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_states, value_states)
proj_shape = (bsz * self.num_heads, -1, self.head_dim)
query_states = tf.reshape(self._shape(query_states, tgt_len, bsz), proj_shape)
key_states = tf.reshape(key_states, proj_shape)
value_states = tf.reshape(value_states, proj_shape)
src_len = shape_list(key_states)[1]
attn_weights = tf.matmul(query_states, key_states, transpose_b=True)
tf.debugging.assert_equal(
shape_list(attn_weights),
[bsz * self.num_heads, tgt_len, src_len],
message=(
f"Attention weights should be of size {(bsz * self.num_heads, tgt_len, src_len)}, but is"
f" {shape_list(attn_weights)}"
),
)
if attention_mask is not None:
tf.debugging.assert_equal(
shape_list(attention_mask),
[bsz, 1, tgt_len, src_len],
message=(
f"Attention mask should be of size {(bsz, 1, tgt_len, src_len)}, but is"
f" {shape_list(attention_mask)}"
),
)
attention_mask = tf.cast(attention_mask, dtype=attn_weights.dtype)
attn_weights = tf.reshape(attn_weights, (bsz, self.num_heads, tgt_len, src_len)) + attention_mask
attn_weights = tf.reshape(attn_weights, (bsz * self.num_heads, tgt_len, src_len))
attn_weights = stable_softmax(attn_weights, axis=-1)
if layer_head_mask is not None:
tf.debugging.assert_equal(
shape_list(layer_head_mask),
[self.num_heads],
message=(
f"Head mask for a single layer should be of size {(self.num_heads)}, but is"
f" {shape_list(layer_head_mask)}"
),
)
attn_weights = tf.reshape(layer_head_mask, (1, -1, 1, 1)) * tf.reshape(
attn_weights, (bsz, self.num_heads, tgt_len, src_len)
)
attn_weights = tf.reshape(attn_weights, (bsz * self.num_heads, tgt_len, src_len))
attn_probs = self.dropout(attn_weights, training=training)
attn_output = tf.matmul(attn_probs, value_states)
tf.debugging.assert_equal(
shape_list(attn_output),
[bsz * self.num_heads, tgt_len, self.head_dim],
message=(
f"`attn_output` should be of size {(bsz, self.num_heads, tgt_len, self.head_dim)}, but is"
f" {shape_list(attn_output)}"
),
)
attn_output = tf.transpose(
tf.reshape(attn_output, (bsz, self.num_heads, tgt_len, self.head_dim)), (0, 2, 1, 3)
)
attn_output = tf.reshape(attn_output, (bsz, tgt_len, embed_dim))
attn_output = self.out_proj(attn_output)
attn_weights: tf.Tensor = tf.reshape(attn_weights, (bsz, self.num_heads, tgt_len, src_len))
return attn_output, attn_weights, past_key_value
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "k_proj", None) is not None:
with tf.name_scope(self.k_proj.name):
self.k_proj.build([None, None, self.embed_dim])
if getattr(self, "q_proj", None) is not None:
with tf.name_scope(self.q_proj.name):
self.q_proj.build([None, None, self.embed_dim])
if getattr(self, "v_proj", None) is not None:
with tf.name_scope(self.v_proj.name):
self.v_proj.build([None, None, self.embed_dim])
if getattr(self, "out_proj", None) is not None:
with tf.name_scope(self.out_proj.name):
self.out_proj.build([None, None, self.embed_dim])
# Copied from transformers.models.mbart.modeling_tf_mbart.TFMBartEncoderLayer with MBart->Blenderbot
class TFBlenderbotEncoderLayer(tf.keras.layers.Layer):
def __init__(self, config: BlenderbotConfig, **kwargs):
super().__init__(**kwargs)
self.embed_dim = config.d_model
self.self_attn = TFBlenderbotAttention(
self.embed_dim, config.encoder_attention_heads, dropout=config.attention_dropout, name="self_attn"
)
self.self_attn_layer_norm = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="self_attn_layer_norm")
self.dropout = tf.keras.layers.Dropout(config.dropout)
self.activation_fn = get_tf_activation(config.activation_function)
self.activation_dropout = tf.keras.layers.Dropout(config.activation_dropout)
self.fc1 = tf.keras.layers.Dense(config.encoder_ffn_dim, name="fc1")
self.fc2 = tf.keras.layers.Dense(self.embed_dim, name="fc2")
self.final_layer_norm = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="final_layer_norm")
self.config = config
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor,
layer_head_mask: tf.Tensor,
training: Optional[bool] = False,
):
"""
Args:
hidden_states (`tf.Tensor`): input to the layer of shape *(batch, seq_len, embed_dim)*
attention_mask (`tf.Tensor`): attention mask of size
*(batch, 1, tgt_len, src_len)* where padding elements are indicated by very large negative values.
layer_head_mask (`tf.Tensor`): mask for attention heads in a given layer of size
*(encoder_attention_heads,)*
"""
residual = hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
hidden_states, self_attn_weights, _ = self.self_attn(
hidden_states=hidden_states, attention_mask=attention_mask, layer_head_mask=layer_head_mask
)
tf.debugging.assert_equal(
shape_list(hidden_states),
shape_list(residual),
message=f"Self attn modified the shape of query {shape_list(residual)} to {shape_list(hidden_states)}",
)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = residual + hidden_states
residual = hidden_states
hidden_states = self.final_layer_norm(hidden_states)
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = self.activation_dropout(hidden_states, training=training)
hidden_states = self.fc2(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = residual + hidden_states
return hidden_states, self_attn_weights
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "self_attn", None) is not None:
with tf.name_scope(self.self_attn.name):
self.self_attn.build(None)
if getattr(self, "self_attn_layer_norm", None) is not None:
with tf.name_scope(self.self_attn_layer_norm.name):
self.self_attn_layer_norm.build([None, None, self.embed_dim])
if getattr(self, "fc1", None) is not None:
with tf.name_scope(self.fc1.name):
self.fc1.build([None, None, self.embed_dim])
if getattr(self, "fc2", None) is not None:
with tf.name_scope(self.fc2.name):
self.fc2.build([None, None, self.config.encoder_ffn_dim])
if getattr(self, "final_layer_norm", None) is not None:
with tf.name_scope(self.final_layer_norm.name):
self.final_layer_norm.build([None, None, self.embed_dim])
# Copied from transformers.models.mbart.modeling_tf_mbart.TFMBartDecoderLayer with MBart->Blenderbot
class TFBlenderbotDecoderLayer(tf.keras.layers.Layer):
def __init__(self, config: BlenderbotConfig, **kwargs):
super().__init__(**kwargs)
self.embed_dim = config.d_model
self.self_attn = TFBlenderbotAttention(
embed_dim=self.embed_dim,
num_heads=config.decoder_attention_heads,
dropout=config.attention_dropout,
name="self_attn",
is_decoder=True,
)
self.dropout = tf.keras.layers.Dropout(config.dropout)
self.activation_fn = get_tf_activation(config.activation_function)
self.activation_dropout = tf.keras.layers.Dropout(config.activation_dropout)
self.self_attn_layer_norm = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="self_attn_layer_norm")
self.encoder_attn = TFBlenderbotAttention(
self.embed_dim,
config.decoder_attention_heads,
dropout=config.attention_dropout,
name="encoder_attn",
is_decoder=True,
)
self.encoder_attn_layer_norm = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="encoder_attn_layer_norm")
self.fc1 = tf.keras.layers.Dense(config.decoder_ffn_dim, name="fc1")
self.fc2 = tf.keras.layers.Dense(self.embed_dim, name="fc2")
self.final_layer_norm = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="final_layer_norm")
self.config = config
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor | None = None,
encoder_hidden_states: tf.Tensor | None = None,
encoder_attention_mask: tf.Tensor | None = None,
layer_head_mask: tf.Tensor | None = None,
cross_attn_layer_head_mask: tf.Tensor | None = None,
past_key_value: Tuple[tf.Tensor] | None = None,
training: Optional[bool] = False,
) -> Tuple[tf.Tensor, tf.Tensor, Tuple[Tuple[tf.Tensor]]]:
"""
Args:
hidden_states (`tf.Tensor`): input to the layer of shape *(batch, seq_len, embed_dim)*
attention_mask (`tf.Tensor`): attention mask of size
*(batch, 1, tgt_len, src_len)* where padding elements are indicated by very large negative values.
encoder_hidden_states (`tf.Tensor`):
cross attention input to the layer of shape *(batch, seq_len, embed_dim)*
encoder_attention_mask (`tf.Tensor`): encoder attention mask of size
*(batch, 1, tgt_len, src_len)* where padding elements are indicated by very large negative values.
layer_head_mask (`tf.Tensor`): mask for attention heads in a given layer of size
*(decoder_attention_heads,)*
cross_attn_layer_head_mask (`tf.Tensor`): mask for heads of the cross-attention module.
*(decoder_attention_heads,)*
past_key_value (`Tuple(tf.Tensor)`): cached past key and value projection states
"""
residual = hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
# Self Attention
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
# add present self-attn cache to positions 1,2 of present_key_value tuple
hidden_states, self_attn_weights, present_key_value = self.self_attn(
hidden_states=hidden_states,
past_key_value=self_attn_past_key_value,
attention_mask=attention_mask,
layer_head_mask=layer_head_mask,
)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = residual + hidden_states
# Cross-Attention Block
cross_attn_present_key_value = None
cross_attn_weights = None
if encoder_hidden_states is not None:
residual = hidden_states
hidden_states = self.encoder_attn_layer_norm(hidden_states)
# cross_attn cached key/values tuple is at positions 3,4 of present_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
hidden_states, cross_attn_weights, cross_attn_present_key_value = self.encoder_attn(
hidden_states=hidden_states,
key_value_states=encoder_hidden_states,
attention_mask=encoder_attention_mask,
layer_head_mask=cross_attn_layer_head_mask,
past_key_value=cross_attn_past_key_value,
)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = residual + hidden_states
# add cross-attn to positions 3,4 of present_key_value tuple
present_key_value = present_key_value + cross_attn_present_key_value
# Fully Connected
residual = hidden_states
hidden_states = self.final_layer_norm(hidden_states)
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = self.activation_dropout(hidden_states, training=training)
hidden_states = self.fc2(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = residual + hidden_states
return (
hidden_states,
self_attn_weights,
cross_attn_weights,
present_key_value,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "self_attn", None) is not None:
with tf.name_scope(self.self_attn.name):
self.self_attn.build(None)
if getattr(self, "self_attn_layer_norm", None) is not None:
with tf.name_scope(self.self_attn_layer_norm.name):
self.self_attn_layer_norm.build([None, None, self.embed_dim])
if getattr(self, "encoder_attn", None) is not None:
with tf.name_scope(self.encoder_attn.name):
self.encoder_attn.build(None)
if getattr(self, "encoder_attn_layer_norm", None) is not None:
with tf.name_scope(self.encoder_attn_layer_norm.name):
self.encoder_attn_layer_norm.build([None, None, self.embed_dim])
if getattr(self, "fc1", None) is not None:
with tf.name_scope(self.fc1.name):
self.fc1.build([None, None, self.embed_dim])
if getattr(self, "fc2", None) is not None:
with tf.name_scope(self.fc2.name):
self.fc2.build([None, None, self.config.decoder_ffn_dim])
if getattr(self, "final_layer_norm", None) is not None:
with tf.name_scope(self.final_layer_norm.name):
self.final_layer_norm.build([None, None, self.embed_dim])
class TFBlenderbotPreTrainedModel(TFPreTrainedModel):
config_class = BlenderbotConfig
base_model_prefix = "model"
BLENDERBOT_START_DOCSTRING = r"""
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a [tf.keras.Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model) subclass. Use it
as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to general usage and
behavior.
<Tip>
TensorFlow models and layers in `transformers` accept two formats as input:
- having all inputs as keyword arguments (like PyTorch models), or
- having all inputs as a list, tuple or dict in the first positional argument.
The reason the second format is supported is that Keras methods prefer this format when passing inputs to models
and layers. Because of this support, when using methods like `model.fit()` things should "just work" for you - just
pass your inputs and labels in any format that `model.fit()` supports! If, however, you want to use the second
format outside of Keras methods like `fit()` and `predict()`, such as when creating your own layers or models with
the Keras `Functional` API, there are three possibilities you can use to gather all the input Tensors in the first
positional argument:
- a single Tensor with `input_ids` only and nothing else: `model(input_ids)`
- a list of varying length with one or several input Tensors IN THE ORDER given in the docstring:
`model([input_ids, attention_mask])` or `model([input_ids, attention_mask, token_type_ids])`
- a dictionary with one or several input Tensors associated to the input names given in the docstring:
`model({"input_ids": input_ids, "token_type_ids": token_type_ids})`
Note that when creating models and layers with
[subclassing](https://keras.io/guides/making_new_layers_and_models_via_subclassing/) then you don't need to worry
about any of this, as you can just pass inputs like you would to any other Python function!
</Tip>
Args:
config ([`BlenderbotConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~TFPreTrainedModel.from_pretrained`] method to load the model weights.
"""
BLENDERBOT_GENERATION_EXAMPLE = r"""
Conversation example::
```py
>>> from transformers import AutoTokenizer, TFBlenderbotForConditionalGeneration
>>> mname = "facebook/blenderbot-400M-distill"
>>> model = TFBlenderbotForConditionalGeneration.from_pretrained(mname)
>>> tokenizer = AutoTokenizer.from_pretrained(mname)
>>> UTTERANCE = "My friends are cool but they eat too many carbs."
>>> print("Human: ", UTTERANCE)
>>> inputs = tokenizer([UTTERANCE], return_tensors="tf")
>>> reply_ids = model.generate(**inputs)
>>> print("Bot: ", tokenizer.batch_decode(reply_ids, skip_special_tokens=True)[0])
>>> REPLY = "I'm not sure"
>>> print("Human: ", REPLY)
>>> NEXT_UTTERANCE = (
... "My friends are cool but they eat too many carbs.</s> <s>That's unfortunate. "
... "Are they trying to lose weight or are they just trying to be healthier?</s> "
... "<s> I'm not sure."
... )
>>> inputs = tokenizer([NEXT_UTTERANCE], return_tensors="tf")
>>> next_reply_ids = model.generate(**inputs)
>>> print("Bot: ", tokenizer.batch_decode(next_reply_ids, skip_special_tokens=True)[0])
```
"""
BLENDERBOT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`tf.Tensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`tf.Tensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
decoder_input_ids (`tf.Tensor` of shape `(batch_size, target_sequence_length)`, *optional*):
Indices of decoder input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are decoder input IDs?](../glossary#decoder-input-ids)
Blenderbot uses the `bos_token_id` as the starting token for `decoder_input_ids` generation. If
`past_key_values` is used, optionally only the last `decoder_input_ids` have to be input (see
`past_key_values`).
decoder_attention_mask (`tf.Tensor` of shape `(batch_size, target_sequence_length)`, *optional*):
will be made by default and ignore pad tokens. It is not recommended to set this for most use cases.
decoder_position_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each decoder input sequence tokens in the position embeddings. Selected in the
range `[0, config.max_position_embeddings - 1]`.
head_mask (`tf.Tensor` of shape `(encoder_layers, encoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules in the encoder. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
decoder_head_mask (`tf.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules in the decoder. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
cross_attn_head_mask (`tf.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the cross-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
encoder_outputs (`tf.FloatTensor`, *optional*):
hidden states at the output of the last layer of the encoder. Used in the cross-attention of the decoder.
of shape `(batch_size, sequence_length, hidden_size)` is a sequence of
past_key_values (`Tuple[Tuple[tf.Tensor]]` of length `config.n_layers`)
contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*, defaults to `True`):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`). Set to `False` during training, `True` during generation
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail. This argument can be used only in eager mode, in graph mode the value in the
config will be used instead.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail. This argument can be used only in eager mode, in graph mode the value in the config will be
used instead.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple. This argument can be used in
eager mode, in graph mode the value will always be set to True.
training (`bool`, *optional*, defaults to `False`):
Whether or not to use the model in training mode (some modules like dropout modules have different
behaviors between training and evaluation).
"""
@keras_serializable
class TFBlenderbotEncoder(tf.keras.layers.Layer):
config_class = BlenderbotConfig
"""
Transformer encoder consisting of *config.encoder_layers* self attention layers. Each layer is a
[`TFBlenderbotEncoderLayer`].
Args:
config: BlenderbotConfig
"""
def __init__(self, config: BlenderbotConfig, embed_tokens: Optional[tf.keras.layers.Embedding] = None, **kwargs):
super().__init__(**kwargs)
self.config = config
self.dropout = tf.keras.layers.Dropout(config.dropout)
self.layerdrop = config.encoder_layerdrop
self.padding_idx = config.pad_token_id
self.max_source_positions = config.max_position_embeddings
self.embed_scale = tf.math.sqrt(float(config.d_model)) if config.scale_embedding else 1.0
self.embed_tokens = embed_tokens
self.embed_positions = TFBlenderbotLearnedPositionalEmbedding(
config.max_position_embeddings,
config.d_model,
name="embed_positions",
)
self.layers = [TFBlenderbotEncoderLayer(config, name=f"layers.{i}") for i in range(config.encoder_layers)]
self.layer_norm = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="layer_norm")
def get_embed_tokens(self):
return self.embed_tokens
def set_embed_tokens(self, embed_tokens):
self.embed_tokens = embed_tokens
@unpack_inputs
def call(
self,
input_ids=None,
inputs_embeds=None,
attention_mask=None,
head_mask=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
):
"""
Args:
input_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you
provide it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
head_mask (`tf.Tensor` of shape `(encoder_layers, encoder_attention_heads)`, `optional):
Mask to nullify selected heads of the attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert `input_ids` indices into associated vectors
than the model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail. This argument can be used only in eager mode, in graph mode the value
in the config will be used instead.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail. This argument can be used only in eager mode, in graph mode the value in the config
will be used instead.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple. This argument can be used
in eager mode, in graph mode the value will always be set to True.
training (`bool`, *optional*, defaults to `False`):
Whether or not to use the model in training mode (some modules like dropout modules have different
behaviors between training and evaluation).
"""
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = shape_list(input_ids)
elif inputs_embeds is not None:
input_shape = shape_list(inputs_embeds)[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if inputs_embeds is None:
check_embeddings_within_bounds(input_ids, self.embed_tokens.input_dim)
inputs_embeds = self.embed_tokens(input_ids) * self.embed_scale
embed_pos = self.embed_positions(input_shape)
hidden_states = inputs_embeds + embed_pos
hidden_states = self.dropout(hidden_states, training=training)
# check attention mask and invert
if attention_mask is not None:
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
attention_mask = _expand_mask(attention_mask)
else:
attention_mask = None
encoder_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
# check if head_mask has a correct number of layers specified if desired
if head_mask is not None:
tf.debugging.assert_equal(
shape_list(head_mask)[0],
len(self.layers),
message=(
f"The head_mask should be specified for {len(self.layers)} layers, but it is for"
f" {shape_list(head_mask)[0]}."
),
)
# encoder layers
for idx, encoder_layer in enumerate(self.layers):
if output_hidden_states:
encoder_states = encoder_states + (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
dropout_probability = random.uniform(0, 1)
if training and (dropout_probability < self.layerdrop): # skip the layer
continue
hidden_states, attn = encoder_layer(
hidden_states,
attention_mask,
head_mask[idx] if head_mask is not None else None,
)
if output_attentions:
all_attentions += (attn,)
hidden_states = self.layer_norm(hidden_states)
if output_hidden_states:
encoder_states = encoder_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, encoder_states, all_attentions] if v is not None)
return TFBaseModelOutput(
last_hidden_state=hidden_states, hidden_states=encoder_states, attentions=all_attentions
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "embed_positions", None) is not None:
with tf.name_scope(self.embed_positions.name):
self.embed_positions.build(None)
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.config.d_model])
if getattr(self, "layers", None) is not None:
for layer in self.layers:
with tf.name_scope(layer.name):
layer.build(None)
@keras_serializable
class TFBlenderbotDecoder(tf.keras.layers.Layer):
config_class = BlenderbotConfig
"""
Transformer decoder consisting of *config.decoder_layers* layers. Each layer is a [`TFBlenderbotDecoderLayer`]
Args:
config: BlenderbotConfig
embed_tokens: output embedding
"""
def __init__(self, config: BlenderbotConfig, embed_tokens: Optional[tf.keras.layers.Embedding] = None, **kwargs):
super().__init__(**kwargs)
self.config = config
self.padding_idx = config.pad_token_id
self.embed_tokens = embed_tokens
self.layerdrop = config.decoder_layerdrop
self.embed_positions = TFBlenderbotLearnedPositionalEmbedding(
config.max_position_embeddings,
config.d_model,
name="embed_positions",
)
self.embed_scale = tf.math.sqrt(float(config.d_model)) if config.scale_embedding else 1.0
self.layers = [TFBlenderbotDecoderLayer(config, name=f"layers.{i}") for i in range(config.decoder_layers)]
self.layer_norm = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="layer_norm")
self.dropout = tf.keras.layers.Dropout(config.dropout)
def get_embed_tokens(self):
return self.embed_tokens
def set_embed_tokens(self, embed_tokens):
self.embed_tokens = embed_tokens
@unpack_inputs
def call(
self,
input_ids=None,
inputs_embeds=None,
attention_mask=None,
position_ids=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
head_mask=None,
cross_attn_head_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
):
r"""
Args:
input_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you
provide it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each decoder input sequence tokens in the position embeddings. Selected in the
range `[0, config.max_position_embeddings - 1]`.
encoder_hidden_states (`tf.Tensor` of shape `(batch_size, encoder_sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention
of the decoder.
encoder_attention_mask (`tf.Tensor` of shape `(batch_size, encoder_sequence_length)`, *optional*):
Mask to avoid performing cross-attention on padding tokens indices of encoder input_ids. Mask values
selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
head_mask (`tf.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
cross_attn_head_mask (`tf.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the cross-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
past_key_values (`Tuple[Tuple[tf.Tensor]]` of length `config.n_layers` with each tuple having 2 tuples each of which has 2 tensors of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden-states of the attention blocks. Can be used to speed up
decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those
that don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of
all `decoder_input_ids` of shape `(batch_size, sequence_length)`.
inputs_embeds (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert `input_ids` indices into associated vectors
than the model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail. This argument can be used only in eager mode, in graph mode the value
in the config will be used instead.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail. This argument can be used only in eager mode, in graph mode the value in the config
will be used instead.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple. This argument can be used
in eager mode, in graph mode the value will always be set to True.
training (`bool`, *optional*, defaults to `False`):
Whether or not to use the model in training mode (some modules like dropout modules have different
behaviors between training and evaluation).
"""
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both decoder_input_ids and decoder_inputs_embeds at the same time")
elif input_ids is not None:
input_shape = shape_list(input_ids)
elif inputs_embeds is not None:
input_shape = shape_list(inputs_embeds)[:-1]
else:
raise ValueError("You have to specify either decoder_input_ids or decoder_inputs_embeds")
past_key_values_length = shape_list(past_key_values[0][0])[2] if past_key_values is not None else 0
# embed positions
if position_ids is None:
positions = self.embed_positions(input_shape, past_key_values_length)
else:
positions = self.embed_positions(input_shape, position_ids=position_ids)
if inputs_embeds is None:
check_embeddings_within_bounds(input_ids, self.embed_tokens.input_dim)
inputs_embeds = self.embed_tokens(input_ids) * self.embed_scale
hidden_states = inputs_embeds
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
if input_shape[-1] > 1:
combined_attention_mask = _make_causal_mask(input_shape, past_key_values_length=past_key_values_length)
else:
combined_attention_mask = _expand_mask(
tf.ones((input_shape[0], input_shape[1] + past_key_values_length)), tgt_len=input_shape[-1]
)
if attention_mask is not None:
combined_attention_mask = combined_attention_mask + _expand_mask(attention_mask, tgt_len=input_shape[-1])
if encoder_hidden_states is not None and encoder_attention_mask is not None:
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
encoder_attention_mask = _expand_mask(encoder_attention_mask, tgt_len=input_shape[-1])
hidden_states = hidden_states + positions
hidden_states = self.dropout(hidden_states, training=training)
# decoder layers
all_hidden_states = () if output_hidden_states else None
all_self_attns = () if output_attentions else None
all_cross_attns = () if (output_attentions and encoder_hidden_states is not None) else None
present_key_values = () if use_cache else None
# check if head_mask and cross_attn_head_mask have a correct number of layers specified if desired
for attn_mask_name, attn_mask in [("head_mask", head_mask), ("cross_attn_head_mask", cross_attn_head_mask)]:
if attn_mask is not None:
tf.debugging.assert_equal(
shape_list(attn_mask)[0],
len(self.layers),
message=(
f"The {attn_mask_name} should be specified for {len(self.layers)} layers, but it is for"
f" {shape_list(attn_mask)[0]}."
),
)
for idx, decoder_layer in enumerate(self.layers):
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
if output_hidden_states:
all_hidden_states += (hidden_states,)
dropout_probability = random.uniform(0, 1)
if training and (dropout_probability < self.layerdrop):
continue
past_key_value = past_key_values[idx] if past_key_values is not None else None
hidden_states, layer_self_attn, layer_cross_attn, present_key_value = decoder_layer(
hidden_states,
attention_mask=combined_attention_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
layer_head_mask=head_mask[idx] if head_mask is not None else None,
cross_attn_layer_head_mask=cross_attn_head_mask[idx] if cross_attn_head_mask is not None else None,
past_key_value=past_key_value,
)
if use_cache:
present_key_values += (present_key_value,)
if output_attentions:
all_self_attns += (layer_self_attn,)
if encoder_hidden_states is not None:
all_cross_attns += (layer_cross_attn,)
hidden_states = self.layer_norm(hidden_states)
if output_hidden_states:
all_hidden_states += (hidden_states,)
if not return_dict:
return hidden_states, present_key_values, all_hidden_states, all_self_attns, all_cross_attns
else:
return TFBaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=present_key_values,
hidden_states=all_hidden_states,
attentions=all_self_attns,
cross_attentions=all_cross_attns,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "embed_positions", None) is not None:
with tf.name_scope(self.embed_positions.name):
self.embed_positions.build(None)
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.config.d_model])
if getattr(self, "layers", None) is not None:
for layer in self.layers:
with tf.name_scope(layer.name):
layer.build(None)
@keras_serializable
class TFBlenderbotMainLayer(tf.keras.layers.Layer):
config_class = BlenderbotConfig
def __init__(self, config: BlenderbotConfig, **kwargs):
super().__init__(**kwargs)
self.config = config
self.shared = tf.keras.layers.Embedding(
input_dim=config.vocab_size,
output_dim=config.d_model,
embeddings_initializer=tf.keras.initializers.TruncatedNormal(stddev=self.config.init_std),
name="model.shared",
)
# Additional attribute to specify the expected name scope of the layer (for loading/storing weights)
self.shared.load_weight_prefix = "model.shared"
self.encoder = TFBlenderbotEncoder(config, self.shared, name="encoder")
self.decoder = TFBlenderbotDecoder(config, self.shared, name="decoder")
def get_input_embeddings(self):
return self.shared
def set_input_embeddings(self, new_embeddings):
self.shared = new_embeddings
self.encoder.embed_tokens = self.shared
self.decoder.embed_tokens = self.shared
@unpack_inputs
def call(
self,
input_ids=None,
attention_mask=None,
decoder_input_ids=None,
decoder_attention_mask=None,
decoder_position_ids=None,
head_mask=None,
decoder_head_mask=None,
cross_attn_head_mask=None,
encoder_outputs: Optional[Union[Tuple, TFBaseModelOutput]] = None,
past_key_values=None,
inputs_embeds=None,
decoder_inputs_embeds=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
**kwargs,
):
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
if encoder_outputs is None:
encoder_outputs = self.encoder(
input_ids=input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
# If the user passed a tuple for encoder_outputs, we wrap it in a TFBaseModelOutput when return_dict=True
elif return_dict and not isinstance(encoder_outputs, TFBaseModelOutput):
encoder_outputs = TFBaseModelOutput(
last_hidden_state=encoder_outputs[0],
hidden_states=encoder_outputs[1] if len(encoder_outputs) > 1 else None,
attentions=encoder_outputs[2] if len(encoder_outputs) > 2 else None,
)
# If the user passed a TFBaseModelOutput for encoder_outputs, we wrap it in a tuple when return_dict=False
elif not return_dict and not isinstance(encoder_outputs, tuple):
encoder_outputs = encoder_outputs.to_tuple()
decoder_outputs = self.decoder(
decoder_input_ids,
attention_mask=decoder_attention_mask,
position_ids=decoder_position_ids,
encoder_hidden_states=encoder_outputs[0],
encoder_attention_mask=attention_mask,
head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
past_key_values=past_key_values,
inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
if not return_dict:
return decoder_outputs + encoder_outputs
return TFSeq2SeqModelOutput(
last_hidden_state=decoder_outputs.last_hidden_state,
past_key_values=decoder_outputs.past_key_values,
decoder_hidden_states=decoder_outputs.hidden_states,
decoder_attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
encoder_last_hidden_state=encoder_outputs.last_hidden_state,
encoder_hidden_states=encoder_outputs.hidden_states,
encoder_attentions=encoder_outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
# The shared/tied weights expect to be in the model base namespace
# Adding "/" to the end (not the start!) of a tf.name_scope puts it in the root namespace rather than
# the current one.
with tf.name_scope(self.shared.load_weight_prefix + "/" + self.shared.name + "/"):
self.shared.build(None)
if getattr(self, "encoder", None) is not None:
with tf.name_scope(self.encoder.name):
self.encoder.build(None)
if getattr(self, "decoder", None) is not None:
with tf.name_scope(self.decoder.name):
self.decoder.build(None)
@add_start_docstrings(
"The bare BLENDERBOT Model outputting raw hidden-states without any specific head on top.",
BLENDERBOT_START_DOCSTRING,
)
class TFBlenderbotModel(TFBlenderbotPreTrainedModel):
def __init__(self, config: BlenderbotConfig, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.model = TFBlenderbotMainLayer(config, name="model")
def get_encoder(self):
return self.model.encoder
def get_decoder(self):
return self.model.decoder
@classmethod
def from_pretrained(cls, pretrained_model_name_or_path: Optional[Union[str, os.PathLike]], *model_args, **kwargs):
if pretrained_model_name_or_path == "facebook/blenderbot-90M":
from ..blenderbot_small import TFBlenderbotSmallModel
warnings.warn(
"The checkpoint `facebook/blenderbot-90M` is deprecated. In the future, please use the identical"
" checkpoint `facebook/small_blenderbot-90M` with"
" `TFBlenderbotSmallForConditionalGeneration.from_pretrained('facebook/small_blenderbot-90M')`"
" instead.",
FutureWarning,
)
return TFBlenderbotSmallModel.from_pretrained(pretrained_model_name_or_path)
return super().from_pretrained(pretrained_model_name_or_path, *model_args, **kwargs)
@unpack_inputs
@add_start_docstrings_to_model_forward(BLENDERBOT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFSeq2SeqModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: tf.Tensor | None = None,
attention_mask: tf.Tensor | None = None,
decoder_input_ids: tf.Tensor | None = None,
decoder_attention_mask: tf.Tensor | None = None,
decoder_position_ids: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
decoder_head_mask: tf.Tensor | None = None,
cross_attn_head_mask: tf.Tensor | None = None,
encoder_outputs: Optional[Union[Tuple, TFBaseModelOutput]] = None,
past_key_values: List[tf.Tensor] | None = None,
inputs_embeds: tf.Tensor | None = None,
decoder_inputs_embeds: tf.Tensor | None = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
**kwargs,
) -> Union[Tuple[tf.Tensor], TFSeq2SeqModelOutput]:
outputs = self.model(
input_ids=input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
decoder_position_ids=decoder_position_ids,
head_mask=head_mask,
decoder_head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
encoder_outputs=encoder_outputs,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
decoder_inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
return outputs
# Copied from transformers.models.bart.modeling_tf_bart.TFBartModel.serving_output
def serving_output(self, output):
pkv = tf.tuple(output.past_key_values)[1] if self.config.use_cache else None
dec_hs = tf.convert_to_tensor(output.decoder_hidden_states) if self.config.output_hidden_states else None
dec_attns = tf.convert_to_tensor(output.decoder_attentions) if self.config.output_attentions else None
cross_attns = tf.convert_to_tensor(output.cross_attentions) if self.config.output_attentions else None
enc_hs = tf.convert_to_tensor(output.encoder_hidden_states) if self.config.output_hidden_states else None
enc_attns = tf.convert_to_tensor(output.encoder_attentions) if self.config.output_attentions else None
return TFSeq2SeqModelOutput(
last_hidden_state=output.last_hidden_state,
past_key_values=pkv,
decoder_hidden_states=dec_hs,
decoder_attentions=dec_attns,
cross_attentions=cross_attns,
encoder_last_hidden_state=output.encoder_last_hidden_state,
encoder_hidden_states=enc_hs,
encoder_attentions=enc_attns,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "model", None) is not None:
with tf.name_scope(self.model.name):
self.model.build(None)
# Copied from transformers.models.bart.modeling_tf_bart.BiasLayer
class BiasLayer(tf.keras.layers.Layer):
"""
Bias as a layer. It is used for serialization purposes: `tf.keras.Model.save_weights` stores on a per-layer basis,
so all weights have to be registered in a layer.
"""
def __init__(self, shape, initializer, trainable, name, **kwargs):
super().__init__(name=name, **kwargs)
# Note: the name of this variable will NOT be scoped when serialized, i.e. it will not be in the format of
# "outer_layer/inner_layer/.../name:0". Instead, it will be "name:0". For further details, see:
# https://github.com/huggingface/transformers/pull/18833#issuecomment-1233090214
self.bias = self.add_weight(name=name, shape=shape, initializer=initializer, trainable=trainable)
def call(self, x):
return x + self.bias
@add_start_docstrings(
"The BLENDERBOT Model with a language modeling head. Can be used for summarization.",
BLENDERBOT_START_DOCSTRING,
)
class TFBlenderbotForConditionalGeneration(TFBlenderbotPreTrainedModel, TFCausalLanguageModelingLoss):
_keys_to_ignore_on_load_unexpected = [
r"model.encoder.embed_tokens.weight",
r"model.decoder.embed_tokens.weight",
]
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.model = TFBlenderbotMainLayer(config, name="model")
self.use_cache = config.use_cache
# final_bias_logits is registered as a buffer in pytorch, so not trainable for the sake of consistency.
self.bias_layer = BiasLayer(
name="final_logits_bias", shape=[1, config.vocab_size], initializer="zeros", trainable=False
)
def get_decoder(self):
return self.model.decoder
def get_encoder(self):
return self.model.encoder
def get_output_embeddings(self):
return self.get_input_embeddings()
def set_output_embeddings(self, value):
self.set_input_embeddings(value)
def get_bias(self):
return {"final_logits_bias": self.bias_layer.bias}
def set_bias(self, value):
# Replaces the existing layers containing bias for correct (de)serialization.
vocab_size = value["final_logits_bias"].shape[-1]
self.bias_layer = BiasLayer(
name="final_logits_bias", shape=[1, vocab_size], initializer="zeros", trainable=False
)
self.bias_layer.bias.assign(value["final_logits_bias"])
@classmethod
def from_pretrained(cls, pretrained_model_name_or_path: Optional[Union[str, os.PathLike]], *model_args, **kwargs):
if pretrained_model_name_or_path == "facebook/blenderbot-90M":
from ..blenderbot_small import TFBlenderbotSmallForConditionalGeneration
warnings.warn(
"The checkpoint `facebook/blenderbot-90M` is deprecated. In the future, please use the identical"
" checkpoint `facebook/small_blenderbot-90M` with"
" `TFBlenderbotSmallForConditionalGeneration.from_pretrained('facebook/small_blenderbot-90M')`"
" instead.",
FutureWarning,
)
return TFBlenderbotSmallForConditionalGeneration.from_pretrained(pretrained_model_name_or_path)
return super().from_pretrained(pretrained_model_name_or_path, *model_args, **kwargs)
@unpack_inputs
@add_start_docstrings_to_model_forward(BLENDERBOT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFSeq2SeqLMOutput, config_class=_CONFIG_FOR_DOC)
@add_end_docstrings(BLENDERBOT_GENERATION_EXAMPLE)
def call(
self,
input_ids: tf.Tensor | None = None,
attention_mask: tf.Tensor | None = None,
decoder_input_ids: tf.Tensor | None = None,
decoder_attention_mask: tf.Tensor | None = None,
decoder_position_ids: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
decoder_head_mask: tf.Tensor | None = None,
cross_attn_head_mask: tf.Tensor | None = None,
encoder_outputs: Optional[Union[Tuple, TFBaseModelOutput]] = None,
past_key_values: List[tf.Tensor] | None = None,
inputs_embeds: tf.Tensor | None = None,
decoder_inputs_embeds: tf.Tensor | None = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[Tuple[tf.Tensor], TFSeq2SeqLMOutput]:
r"""
labels (`tf.tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should either be in `[0, ...,
config.vocab_size]` or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
(masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
Returns:
"""
if labels is not None:
labels = tf.where(
labels == self.config.pad_token_id,
tf.cast(tf.fill(shape_list(labels), -100), labels.dtype),
labels,
)
use_cache = False
if decoder_input_ids is None and decoder_inputs_embeds is None:
decoder_input_ids = shift_tokens_right(
labels, self.config.pad_token_id, self.config.decoder_start_token_id
)
outputs = self.model(
input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
encoder_outputs=encoder_outputs,
decoder_attention_mask=decoder_attention_mask,
decoder_position_ids=decoder_position_ids,
head_mask=head_mask,
decoder_head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
decoder_inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
lm_logits = tf.matmul(outputs[0], self.model.shared.weights, transpose_b=True)
lm_logits = self.bias_layer(lm_logits)
masked_lm_loss = None if labels is None else self.hf_compute_loss(labels, lm_logits)
if not return_dict:
output = (lm_logits,) + outputs[1:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return TFSeq2SeqLMOutput(
loss=masked_lm_loss,
logits=lm_logits,
past_key_values=outputs.past_key_values, # index 1 of d outputs
decoder_hidden_states=outputs.decoder_hidden_states, # index 2 of d outputs
decoder_attentions=outputs.decoder_attentions, # index 3 of d outputs
cross_attentions=outputs.cross_attentions, # index 4 of d outputs
encoder_last_hidden_state=outputs.encoder_last_hidden_state, # index 0 of encoder outputs
encoder_hidden_states=outputs.encoder_hidden_states, # 1 of e out
encoder_attentions=outputs.encoder_attentions, # 2 of e out
)
# Copied from transformers.models.bart.modeling_tf_bart.TFBartForConditionalGeneration.serving_output
def serving_output(self, output):
pkv = tf.tuple(output.past_key_values)[1] if self.config.use_cache else None
dec_hs = tf.convert_to_tensor(output.decoder_hidden_states) if self.config.output_hidden_states else None
dec_attns = tf.convert_to_tensor(output.decoder_attentions) if self.config.output_attentions else None
cross_attns = tf.convert_to_tensor(output.cross_attentions) if self.config.output_attentions else None
enc_hs = tf.convert_to_tensor(output.encoder_hidden_states) if self.config.output_hidden_states else None
enc_attns = tf.convert_to_tensor(output.encoder_attentions) if self.config.output_attentions else None
return TFSeq2SeqLMOutput(
logits=output.logits,
past_key_values=pkv,
decoder_hidden_states=dec_hs,
decoder_attentions=dec_attns,
cross_attentions=cross_attns,
encoder_last_hidden_state=output.encoder_last_hidden_state,
encoder_hidden_states=enc_hs,
encoder_attentions=enc_attns,
)
# Copied from transformers.models.bart.modeling_tf_bart.TFBartForConditionalGeneration.prepare_inputs_for_generation
def prepare_inputs_for_generation(
self,
decoder_input_ids,
past_key_values=None,
attention_mask=None,
decoder_attention_mask=None,
head_mask=None,
decoder_head_mask=None,
cross_attn_head_mask=None,
use_cache=None,
encoder_outputs=None,
**kwargs,
):
# cut decoder_input_ids if past_key_values is used
if past_key_values is not None:
decoder_input_ids = decoder_input_ids[:, -1:]
if decoder_attention_mask is not None: # xla
decoder_position_ids = tf.math.cumsum(decoder_attention_mask, axis=-1, exclusive=True)[:, -1:]
elif past_key_values is not None: # no xla + past_key_values
decoder_position_ids = past_key_values[0][0].shape[2]
else: # no xla + no past_key_values
decoder_position_ids = tf.range(decoder_input_ids.shape[1])
return {
"input_ids": None, # encoder_outputs is defined. input_ids not needed
"encoder_outputs": encoder_outputs,
"past_key_values": past_key_values,
"decoder_input_ids": decoder_input_ids,
"attention_mask": attention_mask,
"decoder_attention_mask": decoder_attention_mask,
"decoder_position_ids": decoder_position_ids,
"head_mask": head_mask,
"decoder_head_mask": decoder_head_mask,
"cross_attn_head_mask": cross_attn_head_mask,
"use_cache": use_cache, # change this to avoid caching (presumably for debugging)
}
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "model", None) is not None:
with tf.name_scope(self.model.name):
self.model.build(None)
if getattr(self, "bias_layer", None) is not None:
with tf.name_scope(self.bias_layer.name):
self.bias_layer.build(None)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/blenderbot/__init__.py | # Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_flax_available,
is_tf_available,
is_tokenizers_available,
is_torch_available,
)
_import_structure = {
"configuration_blenderbot": [
"BLENDERBOT_PRETRAINED_CONFIG_ARCHIVE_MAP",
"BlenderbotConfig",
"BlenderbotOnnxConfig",
],
"tokenization_blenderbot": ["BlenderbotTokenizer"],
}
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["tokenization_blenderbot_fast"] = ["BlenderbotTokenizerFast"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_blenderbot"] = [
"BLENDERBOT_PRETRAINED_MODEL_ARCHIVE_LIST",
"BlenderbotForCausalLM",
"BlenderbotForConditionalGeneration",
"BlenderbotModel",
"BlenderbotPreTrainedModel",
]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_blenderbot"] = [
"TFBlenderbotForConditionalGeneration",
"TFBlenderbotModel",
"TFBlenderbotPreTrainedModel",
]
try:
if not is_flax_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_flax_blenderbot"] = [
"FlaxBlenderbotForConditionalGeneration",
"FlaxBlenderbotModel",
"FlaxBlenderbotPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_blenderbot import (
BLENDERBOT_PRETRAINED_CONFIG_ARCHIVE_MAP,
BlenderbotConfig,
BlenderbotOnnxConfig,
)
from .tokenization_blenderbot import BlenderbotTokenizer
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .tokenization_blenderbot_fast import BlenderbotTokenizerFast
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_blenderbot import (
BLENDERBOT_PRETRAINED_MODEL_ARCHIVE_LIST,
BlenderbotForCausalLM,
BlenderbotForConditionalGeneration,
BlenderbotModel,
BlenderbotPreTrainedModel,
)
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_blenderbot import (
TFBlenderbotForConditionalGeneration,
TFBlenderbotModel,
TFBlenderbotPreTrainedModel,
)
try:
if not is_flax_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_flax_blenderbot import (
FlaxBlenderbotForConditionalGeneration,
FlaxBlenderbotModel,
FlaxBlenderbotPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/blenderbot/modeling_flax_blenderbot.py | # coding=utf-8
# Copyright 2021 The Fairseq Authors and The Google Flax Team Authors And The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Flax Blenderbot model."""
import math
import random
from functools import partial
from typing import Callable, Optional, Tuple
import flax.linen as nn
import jax
import jax.numpy as jnp
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.linen import combine_masks, make_causal_mask
from flax.linen.attention import dot_product_attention_weights
from flax.traverse_util import flatten_dict, unflatten_dict
from jax import lax
from jax.random import PRNGKey
from ...modeling_flax_outputs import (
FlaxBaseModelOutput,
FlaxBaseModelOutputWithPastAndCrossAttentions,
FlaxCausalLMOutputWithCrossAttentions,
FlaxSeq2SeqLMOutput,
FlaxSeq2SeqModelOutput,
)
from ...modeling_flax_utils import (
ACT2FN,
FlaxPreTrainedModel,
append_call_sample_docstring,
append_replace_return_docstrings,
overwrite_call_docstring,
)
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_blenderbot import BlenderbotConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "BlenderbotConfig"
_CHECKPOINT_FOR_DOC = "facebook/blenderbot-400M-distill"
BLENDERBOT_START_DOCSTRING = r"""
This model inherits from [`FlaxPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a Flax Linen
[flax.nn.Module](https://flax.readthedocs.io/en/latest/_autosummary/flax.nn.module.html) subclass. Use it as a
regular Flax Module and refer to the Flax documentation for all matter related to general usage and behavior.
Finally, this model supports inherent JAX features such as:
- [Just-In-Time (JIT) compilation](https://jax.readthedocs.io/en/latest/jax.html#just-in-time-compilation-jit)
- [Automatic Differentiation](https://jax.readthedocs.io/en/latest/jax.html#automatic-differentiation)
- [Vectorization](https://jax.readthedocs.io/en/latest/jax.html#vectorization-vmap)
- [Parallelization](https://jax.readthedocs.io/en/latest/jax.html#parallelization-pmap)
Parameters:
config ([`BlenderbotConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~FlaxPreTrainedModel.from_pretrained`] method to load the model weights.
"""
BLENDERBOT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`jnp.ndarray` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`jnp.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
decoder_input_ids (`jnp.ndarray` of shape `(batch_size, target_sequence_length)`, *optional*):
Indices of decoder input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are decoder input IDs?](../glossary#decoder-input-ids)
For translation and summarization training, `decoder_input_ids` should be provided. If no
`decoder_input_ids` is provided, the model will create this tensor by shifting the `input_ids` to the right
for denoising pre-training following the paper.
decoder_attention_mask (`jnp.ndarray` of shape `(batch_size, target_sequence_length)`, *optional*):
Default behavior: generate a tensor that ignores pad tokens in `decoder_input_ids`. Causal mask will also
be used by default.
If you want to change padding behavior, you should modify to your needs. See diagram 1 in [the
paper](https://arxiv.org/abs/1910.13461) for more information on the default strategy.
position_ids (`numpy.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
decoder_position_ids (`numpy.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each decoder input sequence tokens in the position embeddings. Selected in the
range `[0, config.max_position_embeddings - 1]`.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
BLENDERBOT_ENCODE_INPUTS_DOCSTRING = r"""
Args:
input_ids (`jnp.ndarray` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`jnp.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`numpy.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
BLENDERBOT_DECODE_INPUTS_DOCSTRING = r"""
Args:
decoder_input_ids (`jnp.ndarray` of shape `(batch_size, target_sequence_length)`):
Indices of decoder input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are decoder input IDs?](../glossary#decoder-input-ids)
For translation and summarization training, `decoder_input_ids` should be provided. If no
`decoder_input_ids` is provided, the model will create this tensor by shifting the `input_ids` to the right
for denoising pre-training following the paper.
encoder_outputs (`tuple(tuple(jnp.ndarray)`):
Tuple consists of (`last_hidden_state`, *optional*: `hidden_states`, *optional*: `attentions`)
`last_hidden_state` of shape `(batch_size, sequence_length, hidden_size)`, *optional*) is a sequence of
hidden-states at the output of the last layer of the encoder. Used in the cross-attention of the decoder.
encoder_attention_mask (`jnp.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
decoder_attention_mask (`jnp.ndarray` of shape `(batch_size, target_sequence_length)`, *optional*):
Default behavior: generate a tensor that ignores pad tokens in `decoder_input_ids`. Causal mask will also
be used by default.
If you want to change padding behavior, you should modify to your needs. See diagram 1 in [the
paper](https://arxiv.org/abs/1910.13461) for more information on the default strategy.
decoder_position_ids (`numpy.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each decoder input sequence tokens in the position embeddings. Selected in the
range `[0, config.max_position_embeddings - 1]`.
past_key_values (`Dict[str, np.ndarray]`, *optional*, returned by `init_cache` or when passing previous `past_key_values`):
Dictionary of pre-computed hidden-states (key and values in the attention blocks) that can be used for fast
auto-regressive decoding. Pre-computed key and value hidden-states are of shape *[batch_size, max_length]*.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
# Copied from transformers.models.bart.modeling_flax_bart.shift_tokens_right
def shift_tokens_right(input_ids: jnp.ndarray, pad_token_id: int, decoder_start_token_id: int) -> jnp.ndarray:
"""
Shift input ids one token to the right.
"""
shifted_input_ids = jnp.zeros_like(input_ids)
shifted_input_ids = shifted_input_ids.at[:, 1:].set(input_ids[:, :-1])
shifted_input_ids = shifted_input_ids.at[:, 0].set(decoder_start_token_id)
shifted_input_ids = jnp.where(shifted_input_ids == -100, pad_token_id, shifted_input_ids)
return shifted_input_ids
# Copied from transformers.models.bart.modeling_flax_bart.FlaxBartAttention with Bart->Blenderbot
class FlaxBlenderbotAttention(nn.Module):
config: BlenderbotConfig
embed_dim: int
num_heads: int
dropout: float = 0.0
causal: bool = False
bias: bool = True
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self) -> None:
self.head_dim = self.embed_dim // self.num_heads
if self.head_dim * self.num_heads != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_heads (got `embed_dim`: {self.embed_dim}"
f" and `num_heads`: {self.num_heads})."
)
dense = partial(
nn.Dense,
self.embed_dim,
use_bias=self.bias,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(self.config.init_std),
)
self.q_proj, self.k_proj, self.v_proj = dense(), dense(), dense()
self.out_proj = dense()
self.dropout_layer = nn.Dropout(rate=self.dropout)
if self.causal:
self.causal_mask = make_causal_mask(
jnp.ones((1, self.config.max_position_embeddings), dtype="bool"), dtype="bool"
)
def _split_heads(self, hidden_states):
return hidden_states.reshape(hidden_states.shape[:2] + (self.num_heads, self.head_dim))
def _merge_heads(self, hidden_states):
return hidden_states.reshape(hidden_states.shape[:2] + (self.embed_dim,))
@nn.compact
def _concatenate_to_cache(self, key, value, query, attention_mask):
"""
This function takes projected key, value states from a single input token and concatenates the states to cached
states from previous steps. This function is slighly adapted from the official Flax repository:
https://github.com/google/flax/blob/491ce18759622506588784b4fca0e4bf05f8c8cd/flax/linen/attention.py#L252
"""
# detect if we're initializing by absence of existing cache data.
is_initialized = self.has_variable("cache", "cached_key")
cached_key = self.variable("cache", "cached_key", jnp.zeros, key.shape, key.dtype)
cached_value = self.variable("cache", "cached_value", jnp.zeros, value.shape, value.dtype)
cache_index = self.variable("cache", "cache_index", lambda: jnp.array(0, dtype=jnp.int32))
if is_initialized:
*batch_dims, max_length, num_heads, depth_per_head = cached_key.value.shape
# update key, value caches with our new 1d spatial slices
cur_index = cache_index.value
indices = (0,) * len(batch_dims) + (cur_index, 0, 0)
key = lax.dynamic_update_slice(cached_key.value, key, indices)
value = lax.dynamic_update_slice(cached_value.value, value, indices)
cached_key.value = key
cached_value.value = value
num_updated_cache_vectors = query.shape[1]
cache_index.value = cache_index.value + num_updated_cache_vectors
# causal mask for cached decoder self-attention: our single query position should only attend to those key positions that have already been generated and cached, not the remaining zero elements.
pad_mask = jnp.broadcast_to(
jnp.arange(max_length) < cur_index + num_updated_cache_vectors,
tuple(batch_dims) + (1, num_updated_cache_vectors, max_length),
)
attention_mask = combine_masks(pad_mask, attention_mask)
return key, value, attention_mask
def __call__(
self,
hidden_states: jnp.ndarray,
key_value_states: Optional[jnp.ndarray] = None,
attention_mask: Optional[jnp.ndarray] = None,
init_cache: bool = False,
deterministic: bool = True,
) -> Tuple[jnp.ndarray]:
"""Input shape: Batch x Time x Channel"""
# if key_value_states are provided this layer is used as a cross-attention layer
# for the decoder
is_cross_attention = key_value_states is not None
batch_size = hidden_states.shape[0]
# get query proj
query_states = self.q_proj(hidden_states)
# get key, value proj
if is_cross_attention:
# cross_attentions
key_states = self.k_proj(key_value_states)
value_states = self.v_proj(key_value_states)
else:
# self_attention
key_states = self.k_proj(hidden_states)
value_states = self.v_proj(hidden_states)
query_states = self._split_heads(query_states)
key_states = self._split_heads(key_states)
value_states = self._split_heads(value_states)
# handle cache prepare causal attention mask
if self.causal:
query_length, key_length = query_states.shape[1], key_states.shape[1]
if self.has_variable("cache", "cached_key"):
mask_shift = self.variables["cache"]["cache_index"]
max_decoder_length = self.variables["cache"]["cached_key"].shape[1]
causal_mask = lax.dynamic_slice(
self.causal_mask, (0, 0, mask_shift, 0), (1, 1, query_length, max_decoder_length)
)
else:
causal_mask = self.causal_mask[:, :, :query_length, :key_length]
causal_mask = jnp.broadcast_to(causal_mask, (batch_size,) + causal_mask.shape[1:])
# combine masks if needed
if attention_mask is not None and self.causal:
attention_mask = jnp.broadcast_to(jnp.expand_dims(attention_mask, axis=(-3, -2)), causal_mask.shape)
attention_mask = combine_masks(attention_mask, causal_mask)
elif self.causal:
attention_mask = causal_mask
elif attention_mask is not None:
attention_mask = jnp.expand_dims(attention_mask, axis=(-3, -2))
# During fast autoregressive decoding, we feed one position at a time,
# and cache the keys and values step by step.
if self.causal and (self.has_variable("cache", "cached_key") or init_cache):
key_states, value_states, attention_mask = self._concatenate_to_cache(
key_states, value_states, query_states, attention_mask
)
# Convert the boolean attention mask to an attention bias.
if attention_mask is not None:
# attention mask in the form of attention bias
attention_bias = lax.select(
attention_mask > 0,
jnp.full(attention_mask.shape, 0.0).astype(self.dtype),
jnp.full(attention_mask.shape, jnp.finfo(self.dtype).min).astype(self.dtype),
)
else:
attention_bias = None
dropout_rng = None
if not deterministic and self.dropout > 0.0:
dropout_rng = self.make_rng("dropout")
attn_weights = dot_product_attention_weights(
query_states,
key_states,
bias=attention_bias,
dropout_rng=dropout_rng,
dropout_rate=self.dropout,
broadcast_dropout=True,
deterministic=deterministic,
dtype=self.dtype,
precision=None,
)
attn_output = jnp.einsum("...hqk,...khd->...qhd", attn_weights, value_states)
attn_output = self._merge_heads(attn_output)
attn_output = self.out_proj(attn_output)
return attn_output, attn_weights
# Copied from transformers.models.mbart.modeling_flax_mbart.FlaxMBartEncoderLayer with MBart->Blenderbot
class FlaxBlenderbotEncoderLayer(nn.Module):
config: BlenderbotConfig
dtype: jnp.dtype = jnp.float32
def setup(self) -> None:
self.embed_dim = self.config.d_model
self.self_attn = FlaxBlenderbotAttention(
config=self.config,
embed_dim=self.embed_dim,
num_heads=self.config.encoder_attention_heads,
dropout=self.config.attention_dropout,
dtype=self.dtype,
)
self.self_attn_layer_norm = nn.LayerNorm(dtype=self.dtype, epsilon=1e-05)
self.dropout_layer = nn.Dropout(rate=self.config.dropout)
self.activation_fn = ACT2FN[self.config.activation_function]
self.activation_dropout_layer = nn.Dropout(rate=self.config.activation_dropout)
self.fc1 = nn.Dense(
self.config.encoder_ffn_dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(self.config.init_std),
)
self.fc2 = nn.Dense(
self.embed_dim, dtype=self.dtype, kernel_init=jax.nn.initializers.normal(self.config.init_std)
)
self.final_layer_norm = nn.LayerNorm(dtype=self.dtype, epsilon=1e-05)
def __call__(
self,
hidden_states: jnp.ndarray,
attention_mask: jnp.ndarray,
output_attentions: bool = True,
deterministic: bool = True,
) -> Tuple[jnp.ndarray]:
residual = hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
hidden_states, attn_weights = self.self_attn(hidden_states=hidden_states, attention_mask=attention_mask)
hidden_states = self.dropout_layer(hidden_states, deterministic=deterministic)
hidden_states = residual + hidden_states
residual = hidden_states
hidden_states = self.final_layer_norm(hidden_states)
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = self.activation_dropout_layer(hidden_states, deterministic=deterministic)
hidden_states = self.fc2(hidden_states)
hidden_states = self.dropout_layer(hidden_states, deterministic=deterministic)
hidden_states = residual + hidden_states
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_weights,)
return outputs
# Copied from transformers.models.bart.modeling_flax_bart.FlaxBartEncoderLayerCollection with Bart->Blenderbot
class FlaxBlenderbotEncoderLayerCollection(nn.Module):
config: BlenderbotConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.layers = [
FlaxBlenderbotEncoderLayer(self.config, name=str(i), dtype=self.dtype)
for i in range(self.config.encoder_layers)
]
self.layerdrop = self.config.encoder_layerdrop
def __call__(
self,
hidden_states,
attention_mask,
deterministic: bool = True,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
all_attentions = () if output_attentions else None
all_hidden_states = () if output_hidden_states else None
for encoder_layer in self.layers:
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
dropout_probability = random.uniform(0, 1)
if not deterministic and (dropout_probability < self.layerdrop): # skip the layer
layer_outputs = (None, None)
else:
layer_outputs = encoder_layer(
hidden_states,
attention_mask,
output_attentions,
deterministic,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states += (hidden_states,)
outputs = (hidden_states, all_hidden_states, all_attentions)
if not return_dict:
return tuple(v for v in outputs if v is not None)
return FlaxBaseModelOutput(
last_hidden_state=hidden_states, hidden_states=all_hidden_states, attentions=all_attentions
)
# Copied from transformers.models.mbart.modeling_flax_mbart.FlaxMBartDecoderLayer with MBart->Blenderbot
class FlaxBlenderbotDecoderLayer(nn.Module):
config: BlenderbotConfig
dtype: jnp.dtype = jnp.float32
def setup(self) -> None:
self.embed_dim = self.config.d_model
self.self_attn = FlaxBlenderbotAttention(
config=self.config,
embed_dim=self.embed_dim,
num_heads=self.config.decoder_attention_heads,
dropout=self.config.attention_dropout,
causal=True,
dtype=self.dtype,
)
self.dropout_layer = nn.Dropout(rate=self.config.dropout)
self.activation_fn = ACT2FN[self.config.activation_function]
self.activation_dropout_layer = nn.Dropout(rate=self.config.activation_dropout)
self.self_attn_layer_norm = nn.LayerNorm(dtype=self.dtype, epsilon=1e-05)
self.encoder_attn = FlaxBlenderbotAttention(
config=self.config,
embed_dim=self.embed_dim,
num_heads=self.config.decoder_attention_heads,
dropout=self.config.attention_dropout,
dtype=self.dtype,
)
self.encoder_attn_layer_norm = nn.LayerNorm(dtype=self.dtype, epsilon=1e-05)
self.fc1 = nn.Dense(
self.config.decoder_ffn_dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(self.config.init_std),
)
self.fc2 = nn.Dense(
self.embed_dim, dtype=self.dtype, kernel_init=jax.nn.initializers.normal(self.config.init_std)
)
self.final_layer_norm = nn.LayerNorm(dtype=self.dtype, epsilon=1e-05)
def __call__(
self,
hidden_states: jnp.ndarray,
attention_mask: jnp.ndarray,
encoder_hidden_states: Optional[jnp.ndarray] = None,
encoder_attention_mask: Optional[jnp.ndarray] = None,
init_cache: bool = False,
output_attentions: bool = True,
deterministic: bool = True,
) -> Tuple[jnp.ndarray]:
residual = hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
# Self Attention
hidden_states, self_attn_weights = self.self_attn(
hidden_states=hidden_states, attention_mask=attention_mask, init_cache=init_cache
)
hidden_states = self.dropout_layer(hidden_states, deterministic=deterministic)
hidden_states = residual + hidden_states
# Cross-Attention Block
cross_attn_weights = None
if encoder_hidden_states is not None:
residual = hidden_states
hidden_states = self.encoder_attn_layer_norm(hidden_states)
hidden_states, cross_attn_weights = self.encoder_attn(
hidden_states=hidden_states,
key_value_states=encoder_hidden_states,
attention_mask=encoder_attention_mask,
)
hidden_states = self.dropout_layer(hidden_states, deterministic=deterministic)
hidden_states = residual + hidden_states
# Fully Connected
residual = hidden_states
hidden_states = self.final_layer_norm(hidden_states)
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = self.activation_dropout_layer(hidden_states, deterministic=deterministic)
hidden_states = self.fc2(hidden_states)
hidden_states = self.dropout_layer(hidden_states, deterministic=deterministic)
hidden_states = residual + hidden_states
outputs = (hidden_states,)
if output_attentions:
outputs += (self_attn_weights, cross_attn_weights)
return outputs
# Copied from transformers.models.bart.modeling_flax_bart.FlaxBartDecoderLayerCollection with Bart->Blenderbot
class FlaxBlenderbotDecoderLayerCollection(nn.Module):
config: BlenderbotConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.layers = [
FlaxBlenderbotDecoderLayer(self.config, name=str(i), dtype=self.dtype)
for i in range(self.config.decoder_layers)
]
self.layerdrop = self.config.decoder_layerdrop
def __call__(
self,
hidden_states,
attention_mask,
encoder_hidden_states: Optional[jnp.ndarray] = None,
encoder_attention_mask: Optional[jnp.ndarray] = None,
deterministic: bool = True,
init_cache: bool = False,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
# decoder layers
all_hidden_states = () if output_hidden_states else None
all_self_attns = () if output_attentions else None
all_cross_attentions = () if (output_attentions and encoder_hidden_states is not None) else None
for decoder_layer in self.layers:
if output_hidden_states:
all_hidden_states += (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
dropout_probability = random.uniform(0, 1)
if not deterministic and (dropout_probability < self.layerdrop):
layer_outputs = (None, None, None)
else:
layer_outputs = decoder_layer(
hidden_states,
attention_mask=attention_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
init_cache=init_cache,
output_attentions=output_attentions,
deterministic=deterministic,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attns += (layer_outputs[1],)
if encoder_hidden_states is not None:
all_cross_attentions += (layer_outputs[2],)
# add hidden states from the last decoder layer
if output_hidden_states:
all_hidden_states += (hidden_states,)
outputs = [hidden_states, all_hidden_states, all_self_attns, all_cross_attentions]
if not return_dict:
return tuple(v for v in outputs if v is not None)
return FlaxBaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attns,
cross_attentions=all_cross_attentions,
)
class FlaxBlenderbotEncoder(nn.Module):
config: BlenderbotConfig
embed_tokens: nn.Embed
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.dropout_layer = nn.Dropout(rate=self.config.dropout)
embed_dim = self.config.d_model
self.padding_idx = self.config.pad_token_id
self.max_source_positions = self.config.max_position_embeddings
self.embed_scale = math.sqrt(embed_dim) if self.config.scale_embedding else 1.0
self.embed_positions = nn.Embed(
self.config.max_position_embeddings,
embed_dim,
embedding_init=jax.nn.initializers.normal(self.config.init_std),
)
self.layers = FlaxBlenderbotEncoderLayerCollection(self.config, self.dtype)
self.layer_norm = nn.LayerNorm(dtype=self.dtype, epsilon=1e-05)
def __call__(
self,
input_ids,
attention_mask,
position_ids,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
deterministic: bool = True,
):
input_shape = input_ids.shape
input_ids = input_ids.reshape(-1, input_shape[-1])
inputs_embeds = self.embed_tokens(input_ids) * self.embed_scale
embed_pos = self.embed_positions(position_ids)
hidden_states = inputs_embeds + embed_pos
hidden_states = self.dropout_layer(hidden_states, deterministic=deterministic)
outputs = self.layers(
hidden_states,
attention_mask,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
last_hidden_states = outputs[0]
last_hidden_states = self.layer_norm(last_hidden_states)
# update the last element in `hidden_states` after applying `layernorm` above
hidden_states = None
if output_hidden_states:
hidden_states = outputs[1]
hidden_states = hidden_states[:-1] + (last_hidden_states,)
if not return_dict:
outputs = (last_hidden_states, hidden_states) + (outputs[2:] if output_hidden_states else outputs[1:])
return tuple(v for v in outputs if v is not None)
return FlaxBaseModelOutput(
last_hidden_state=last_hidden_states,
hidden_states=hidden_states,
attentions=outputs.attentions,
)
class FlaxBlenderbotDecoder(nn.Module):
config: BlenderbotConfig
embed_tokens: nn.Embed
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.dropout_layer = nn.Dropout(rate=self.config.dropout)
embed_dim = self.config.d_model
self.padding_idx = self.config.pad_token_id
self.max_target_positions = self.config.max_position_embeddings
self.embed_scale = math.sqrt(self.config.d_model) if self.config.scale_embedding else 1.0
self.embed_positions = nn.Embed(
self.config.max_position_embeddings,
embed_dim,
embedding_init=jax.nn.initializers.normal(self.config.init_std),
)
self.layers = FlaxBlenderbotDecoderLayerCollection(self.config, self.dtype)
self.layer_norm = nn.LayerNorm(dtype=self.dtype, epsilon=1e-05)
def __call__(
self,
input_ids,
attention_mask,
position_ids,
encoder_hidden_states: Optional[jnp.ndarray] = None,
encoder_attention_mask: Optional[jnp.ndarray] = None,
init_cache: bool = False,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
deterministic: bool = True,
):
input_shape = input_ids.shape
input_ids = input_ids.reshape(-1, input_shape[-1])
inputs_embeds = self.embed_tokens(input_ids) * self.embed_scale
# embed positions
positions = self.embed_positions(position_ids)
hidden_states = inputs_embeds + positions
hidden_states = self.dropout_layer(hidden_states, deterministic=deterministic)
outputs = self.layers(
hidden_states,
attention_mask,
encoder_hidden_states,
encoder_attention_mask,
deterministic=deterministic,
init_cache=init_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
last_hidden_states = outputs[0]
last_hidden_states = self.layer_norm(last_hidden_states)
# update the last element in `hidden_states` after applying `layernorm` above
hidden_states = None
if output_hidden_states:
hidden_states = outputs[1]
hidden_states = hidden_states[:-1] + (last_hidden_states,)
if not return_dict:
outputs = (last_hidden_states, hidden_states) + (outputs[2:] if output_hidden_states else outputs[1:])
return tuple(v for v in outputs if v is not None)
return FlaxBaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=last_hidden_states,
hidden_states=hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
# Copied from transformers.models.bart.modeling_flax_bart.FlaxBartModule with Bart->Blenderbot
class FlaxBlenderbotModule(nn.Module):
config: BlenderbotConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.shared = nn.Embed(
self.config.vocab_size,
self.config.d_model,
embedding_init=jax.nn.initializers.normal(self.config.init_std),
dtype=self.dtype,
)
self.encoder = FlaxBlenderbotEncoder(self.config, dtype=self.dtype, embed_tokens=self.shared)
self.decoder = FlaxBlenderbotDecoder(self.config, dtype=self.dtype, embed_tokens=self.shared)
def _get_encoder_module(self):
return self.encoder
def _get_decoder_module(self):
return self.decoder
def __call__(
self,
input_ids,
attention_mask,
decoder_input_ids,
decoder_attention_mask,
position_ids,
decoder_position_ids,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
deterministic: bool = True,
):
encoder_outputs = self.encoder(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=deterministic,
)
decoder_outputs = self.decoder(
input_ids=decoder_input_ids,
attention_mask=decoder_attention_mask,
position_ids=decoder_position_ids,
encoder_hidden_states=encoder_outputs[0],
encoder_attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=deterministic,
)
if not return_dict:
return decoder_outputs + encoder_outputs
return FlaxSeq2SeqModelOutput(
last_hidden_state=decoder_outputs.last_hidden_state,
decoder_hidden_states=decoder_outputs.hidden_states,
decoder_attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
encoder_last_hidden_state=encoder_outputs.last_hidden_state,
encoder_hidden_states=encoder_outputs.hidden_states,
encoder_attentions=encoder_outputs.attentions,
)
class FlaxBlenderbotPreTrainedModel(FlaxPreTrainedModel):
config_class = BlenderbotConfig
base_model_prefix: str = "model"
module_class: nn.Module = None
def __init__(
self,
config: BlenderbotConfig,
input_shape: Tuple[int] = (1, 1),
seed: int = 0,
dtype: jnp.dtype = jnp.float32,
_do_init: bool = True,
**kwargs,
):
module = self.module_class(config=config, dtype=dtype, **kwargs)
super().__init__(config, module, input_shape=input_shape, seed=seed, dtype=dtype, _do_init=_do_init)
def init_weights(self, rng: jax.random.PRNGKey, input_shape: Tuple, params: FrozenDict = None) -> FrozenDict:
# init input tensors
input_ids = jnp.zeros(input_shape, dtype="i4")
# make sure initialization pass will work for FlaxBlenderbotForSequenceClassificationModule
input_ids = input_ids.at[(..., -1)].set(self.config.eos_token_id)
attention_mask = jnp.ones_like(input_ids)
decoder_input_ids = input_ids
decoder_attention_mask = jnp.ones_like(input_ids)
batch_size, sequence_length = input_ids.shape
position_ids = jnp.broadcast_to(jnp.arange(sequence_length)[None, :], (batch_size, sequence_length))
decoder_position_ids = jnp.broadcast_to(jnp.arange(sequence_length)[None, :], (batch_size, sequence_length))
params_rng, dropout_rng = jax.random.split(rng)
rngs = {"params": params_rng, "dropout": dropout_rng}
random_params = self.module.init(
rngs,
input_ids,
attention_mask,
decoder_input_ids,
decoder_attention_mask,
position_ids,
decoder_position_ids,
)["params"]
if params is not None:
random_params = flatten_dict(unfreeze(random_params))
params = flatten_dict(unfreeze(params))
for missing_key in self._missing_keys:
params[missing_key] = random_params[missing_key]
self._missing_keys = set()
return freeze(unflatten_dict(params))
else:
return random_params
def init_cache(self, batch_size, max_length, encoder_outputs):
r"""
Args:
batch_size (`int`):
batch_size used for fast auto-regressive decoding. Defines the batch size of the initialized cache.
max_length (`int`):
maximum possible length for auto-regressive decoding. Defines the sequence length of the initialized
cache.
encoder_outputs (`Union[FlaxBaseModelOutput, tuple(tuple(jnp.ndarray)]`):
`encoder_outputs` consists of (`last_hidden_state`, *optional*: `hidden_states`, *optional*:
`attentions`). `last_hidden_state` of shape `(batch_size, sequence_length, hidden_size)`, *optional*)
is a sequence of hidden-states at the output of the last layer of the encoder. Used in the
cross-attention of the decoder.
"""
# init input variables to retrieve cache
decoder_input_ids = jnp.ones((batch_size, max_length), dtype="i4")
decoder_attention_mask = jnp.ones_like(decoder_input_ids)
decoder_position_ids = jnp.broadcast_to(
jnp.arange(jnp.atleast_2d(decoder_input_ids).shape[-1]), decoder_input_ids.shape
)
def _decoder_forward(module, decoder_input_ids, decoder_attention_mask, decoder_position_ids, **kwargs):
decoder_module = module._get_decoder_module()
return decoder_module(
decoder_input_ids,
decoder_attention_mask,
decoder_position_ids,
**kwargs,
)
init_variables = self.module.init(
jax.random.PRNGKey(0),
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
decoder_position_ids=decoder_position_ids,
encoder_hidden_states=encoder_outputs[0],
init_cache=True,
method=_decoder_forward, # we only need to call the decoder to init the cache
)
return unfreeze(init_variables["cache"])
@add_start_docstrings(BLENDERBOT_ENCODE_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=FlaxBaseModelOutput, config_class=BlenderbotConfig)
def encode(
self,
input_ids: jnp.ndarray,
attention_mask: Optional[jnp.ndarray] = None,
position_ids: Optional[jnp.ndarray] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
train: bool = False,
params: dict = None,
dropout_rng: PRNGKey = None,
):
r"""
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, FlaxBlenderbotForConditionalGeneration
>>> model = FlaxBlenderbotForConditionalGeneration.from_pretrained("facebook/blenderbot-400M-distill")
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/blenderbot-400M-distill")
>>> text = "My friends are cool but they eat too many carbs."
>>> inputs = tokenizer(text, max_length=1024, return_tensors="jax")
>>> encoder_outputs = model.encode(**inputs)
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
if attention_mask is None:
attention_mask = jnp.ones_like(input_ids)
if position_ids is None:
batch_size, sequence_length = input_ids.shape
position_ids = jnp.broadcast_to(jnp.arange(sequence_length)[None, :], (batch_size, sequence_length))
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
def _encoder_forward(module, input_ids, attention_mask, position_ids, **kwargs):
encode_module = module._get_encoder_module()
return encode_module(input_ids, attention_mask, position_ids, **kwargs)
return self.module.apply(
{"params": params or self.params},
input_ids=jnp.array(input_ids, dtype="i4"),
attention_mask=jnp.array(attention_mask, dtype="i4"),
position_ids=jnp.array(position_ids, dtype="i4"),
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=not train,
rngs=rngs,
method=_encoder_forward,
)
@add_start_docstrings(BLENDERBOT_DECODE_INPUTS_DOCSTRING)
@replace_return_docstrings(
output_type=FlaxBaseModelOutputWithPastAndCrossAttentions, config_class=BlenderbotConfig
)
def decode(
self,
decoder_input_ids,
encoder_outputs,
encoder_attention_mask: Optional[jnp.ndarray] = None,
decoder_attention_mask: Optional[jnp.ndarray] = None,
decoder_position_ids: Optional[jnp.ndarray] = None,
past_key_values: dict = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
train: bool = False,
params: dict = None,
dropout_rng: PRNGKey = None,
):
r"""
Returns:
Example:
```python
>>> import jax.numpy as jnp
>>> from transformers import AutoTokenizer, FlaxBlenderbotForConditionalGeneration
>>> model = FlaxBlenderbotForConditionalGeneration.from_pretrained("facebook/blenderbot-400M-distill")
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/blenderbot-400M-distill")
>>> text = "My friends are cool but they eat too many carbs."
>>> inputs = tokenizer(text, max_length=1024, return_tensors="jax")
>>> encoder_outputs = model.encode(**inputs)
>>> decoder_start_token_id = model.config.decoder_start_token_id
>>> decoder_input_ids = jnp.ones((inputs.input_ids.shape[0], 1), dtype="i4") * decoder_start_token_id
>>> outputs = model.decode(decoder_input_ids, encoder_outputs)
>>> last_decoder_hidden_states = outputs.last_hidden_state
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
encoder_hidden_states = encoder_outputs[0]
if encoder_attention_mask is None:
batch_size, sequence_length = encoder_hidden_states.shape[:2]
encoder_attention_mask = jnp.ones((batch_size, sequence_length))
batch_size, sequence_length = decoder_input_ids.shape
if decoder_attention_mask is None:
decoder_attention_mask = jnp.ones((batch_size, sequence_length))
if decoder_position_ids is None:
if past_key_values is not None:
raise ValueError("Make sure to provide `decoder_position_ids` when passing `past_key_values`.")
decoder_position_ids = jnp.broadcast_to(
jnp.arange(sequence_length)[None, :], (batch_size, sequence_length)
)
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
inputs = {"params": params or self.params}
# if past_key_values are passed then cache is already initialized a private flag init_cache has to be
# passed down to ensure cache is used. It has to be made sure that cache is marked as mutable so that
# it can be changed by FlaxBlenderbotAttention module
if past_key_values:
inputs["cache"] = past_key_values
mutable = ["cache"]
else:
mutable = False
def _decoder_forward(module, decoder_input_ids, decoder_attention_mask, decoder_position_ids, **kwargs):
decoder_module = module._get_decoder_module()
return decoder_module(
decoder_input_ids,
decoder_attention_mask,
decoder_position_ids,
**kwargs,
)
outputs = self.module.apply(
inputs,
decoder_input_ids=jnp.array(decoder_input_ids, dtype="i4"),
decoder_attention_mask=jnp.array(decoder_attention_mask, dtype="i4"),
decoder_position_ids=jnp.array(decoder_position_ids, dtype="i4"),
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=jnp.array(encoder_attention_mask, dtype="i4"),
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=not train,
rngs=rngs,
mutable=mutable,
method=_decoder_forward,
)
# add updated cache to model output
if past_key_values is not None and return_dict:
outputs, past = outputs
outputs["past_key_values"] = unfreeze(past["cache"])
return outputs
elif past_key_values is not None and not return_dict:
outputs, past = outputs
outputs = outputs[:1] + (unfreeze(past["cache"]),) + outputs[1:]
return outputs
@add_start_docstrings_to_model_forward(BLENDERBOT_INPUTS_DOCSTRING)
def __call__(
self,
input_ids: jnp.ndarray,
attention_mask: Optional[jnp.ndarray] = None,
decoder_input_ids: Optional[jnp.ndarray] = None,
decoder_attention_mask: Optional[jnp.ndarray] = None,
position_ids: Optional[jnp.ndarray] = None,
decoder_position_ids: Optional[jnp.ndarray] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
train: bool = False,
params: dict = None,
dropout_rng: PRNGKey = None,
):
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
# prepare encoder inputs
if attention_mask is None:
attention_mask = jnp.ones_like(input_ids)
if position_ids is None:
batch_size, sequence_length = input_ids.shape
position_ids = jnp.broadcast_to(jnp.arange(sequence_length)[None, :], (batch_size, sequence_length))
# prepare decoder inputs
if decoder_input_ids is None:
decoder_input_ids = shift_tokens_right(
input_ids, self.config.pad_token_id, decoder_start_token_id=self.config.decoder_start_token_id
)
if decoder_attention_mask is None:
decoder_attention_mask = jnp.ones_like(decoder_input_ids)
if decoder_position_ids is None:
batch_size, sequence_length = decoder_input_ids.shape
decoder_position_ids = jnp.broadcast_to(
jnp.arange(sequence_length)[None, :], (batch_size, sequence_length)
)
# Handle any PRNG if needed
rngs = {"dropout": dropout_rng} if dropout_rng is not None else {}
return self.module.apply(
{"params": params or self.params},
input_ids=jnp.array(input_ids, dtype="i4"),
attention_mask=jnp.array(attention_mask, dtype="i4"),
position_ids=jnp.array(position_ids, dtype="i4"),
decoder_input_ids=jnp.array(decoder_input_ids, dtype="i4"),
decoder_attention_mask=jnp.array(decoder_attention_mask, dtype="i4"),
decoder_position_ids=jnp.array(decoder_position_ids, dtype="i4"),
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=not train,
rngs=rngs,
)
@add_start_docstrings(
"The bare MBart Model transformer outputting raw hidden-states without any specific head on top.",
BLENDERBOT_START_DOCSTRING,
)
class FlaxBlenderbotModel(FlaxBlenderbotPreTrainedModel):
config: BlenderbotConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
module_class = FlaxBlenderbotModule
append_call_sample_docstring(FlaxBlenderbotModel, _CHECKPOINT_FOR_DOC, FlaxSeq2SeqModelOutput, _CONFIG_FOR_DOC)
# Copied from transformers.models.bart.modeling_flax_bart.FlaxBartForConditionalGenerationModule with Bart->Blenderbot
class FlaxBlenderbotForConditionalGenerationModule(nn.Module):
config: BlenderbotConfig
dtype: jnp.dtype = jnp.float32
bias_init: Callable[..., jnp.ndarray] = jax.nn.initializers.zeros
def setup(self):
self.model = FlaxBlenderbotModule(config=self.config, dtype=self.dtype)
self.lm_head = nn.Dense(
self.model.shared.num_embeddings,
use_bias=False,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(self.config.init_std),
)
self.final_logits_bias = self.param("final_logits_bias", self.bias_init, (1, self.model.shared.num_embeddings))
def _get_encoder_module(self):
return self.model.encoder
def _get_decoder_module(self):
return self.model.decoder
def __call__(
self,
input_ids,
attention_mask,
decoder_input_ids,
decoder_attention_mask,
position_ids,
decoder_position_ids,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
deterministic: bool = True,
):
outputs = self.model(
input_ids=input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
position_ids=position_ids,
decoder_position_ids=decoder_position_ids,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=deterministic,
)
hidden_states = outputs[0]
if self.config.tie_word_embeddings:
shared_embedding = self.model.variables["params"]["shared"]["embedding"]
lm_logits = self.lm_head.apply({"params": {"kernel": shared_embedding.T}}, hidden_states)
else:
lm_logits = self.lm_head(hidden_states)
lm_logits += jax.lax.stop_gradient(self.final_logits_bias.astype(self.dtype))
if not return_dict:
output = (lm_logits,) + outputs[1:]
return output
return FlaxSeq2SeqLMOutput(
logits=lm_logits,
decoder_hidden_states=outputs.decoder_hidden_states,
decoder_attentions=outputs.decoder_attentions,
cross_attentions=outputs.cross_attentions,
encoder_last_hidden_state=outputs.encoder_last_hidden_state,
encoder_hidden_states=outputs.encoder_hidden_states,
encoder_attentions=outputs.encoder_attentions,
)
@add_start_docstrings(
"The Blenderbot Model with a language modeling head. Can be used for summarization.", BLENDERBOT_START_DOCSTRING
)
class FlaxBlenderbotForConditionalGeneration(FlaxBlenderbotPreTrainedModel):
module_class = FlaxBlenderbotForConditionalGenerationModule
dtype: jnp.dtype = jnp.float32
@add_start_docstrings(BLENDERBOT_DECODE_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=FlaxCausalLMOutputWithCrossAttentions, config_class=BlenderbotConfig)
def decode(
self,
decoder_input_ids,
encoder_outputs,
encoder_attention_mask: Optional[jnp.ndarray] = None,
decoder_attention_mask: Optional[jnp.ndarray] = None,
decoder_position_ids: Optional[jnp.ndarray] = None,
past_key_values: dict = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
train: bool = False,
params: dict = None,
dropout_rng: PRNGKey = None,
):
r"""
Returns:
Example:
```python
>>> import jax.numpy as jnp
>>> from transformers import AutoTokenizer, FlaxBlenderbotForConditionalGeneration
>>> model = FlaxBlenderbotForConditionalGeneration.from_pretrained("facebook/blenderbot-400M-distill")
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/blenderbot-400M-distill")
>>> text = "My friends are cool but they eat too many carbs."
>>> inputs = tokenizer(text, max_length=1024, return_tensors="jax")
>>> encoder_outputs = model.encode(**inputs)
>>> decoder_start_token_id = model.config.decoder_start_token_id
>>> decoder_input_ids = jnp.ones((inputs.input_ids.shape[0], 1), dtype="i4") * decoder_start_token_id
>>> outputs = model.decode(decoder_input_ids, encoder_outputs)
>>> logits = outputs.logits
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
encoder_hidden_states = encoder_outputs[0]
if encoder_attention_mask is None:
batch_size, sequence_length = encoder_hidden_states.shape[:2]
encoder_attention_mask = jnp.ones((batch_size, sequence_length))
batch_size, sequence_length = decoder_input_ids.shape
if decoder_attention_mask is None:
decoder_attention_mask = jnp.ones((batch_size, sequence_length))
if decoder_position_ids is None:
if past_key_values is not None:
raise ValueError("Make sure to provide `decoder_position_ids` when passing `past_key_values`.")
decoder_position_ids = jnp.broadcast_to(
jnp.arange(sequence_length)[None, :], (batch_size, sequence_length)
)
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
inputs = {"params": params or self.params}
# if past_key_values are passed then cache is already initialized a private flag init_cache has to be
# passed down to ensure cache is used. It has to be made sure that cache is marked as mutable so that
# it can be changed by FlaxBlenderbotAttention module
if past_key_values:
inputs["cache"] = past_key_values
mutable = ["cache"]
else:
mutable = False
def _decoder_forward(module, decoder_input_ids, decoder_attention_mask, decoder_position_ids, **kwargs):
decoder_module = module._get_decoder_module()
outputs = decoder_module(
decoder_input_ids,
decoder_attention_mask,
decoder_position_ids,
**kwargs,
)
hidden_states = outputs[0]
if self.config.tie_word_embeddings:
shared_embedding = module.model.variables["params"]["shared"]["embedding"]
lm_logits = module.lm_head.apply({"params": {"kernel": shared_embedding.T}}, hidden_states)
else:
lm_logits = module.lm_head(hidden_states)
lm_logits += module.final_logits_bias
return lm_logits, outputs
outputs = self.module.apply(
inputs,
decoder_input_ids=jnp.array(decoder_input_ids, dtype="i4"),
decoder_attention_mask=jnp.array(decoder_attention_mask, dtype="i4"),
decoder_position_ids=jnp.array(decoder_position_ids, dtype="i4"),
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=jnp.array(encoder_attention_mask, dtype="i4"),
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=not train,
rngs=rngs,
mutable=mutable,
method=_decoder_forward,
)
if past_key_values is None:
lm_logits, decoder_outputs = outputs
else:
(lm_logits, decoder_outputs), past = outputs
if return_dict:
outputs = FlaxCausalLMOutputWithCrossAttentions(
logits=lm_logits,
hidden_states=decoder_outputs.hidden_states,
attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
)
else:
outputs = (lm_logits,) + decoder_outputs[1:]
# add updated cache to model output
if past_key_values is not None and return_dict:
outputs["past_key_values"] = unfreeze(past["cache"])
return outputs
elif past_key_values is not None and not return_dict:
outputs = outputs[:1] + (unfreeze(past["cache"]),) + outputs[1:]
return outputs
def prepare_inputs_for_generation(
self,
decoder_input_ids,
max_length,
attention_mask: Optional[jax.Array] = None,
decoder_attention_mask: Optional[jax.Array] = None,
encoder_outputs=None,
**kwargs,
):
# initializing the cache
batch_size, seq_length = decoder_input_ids.shape
past_key_values = self.init_cache(batch_size, max_length, encoder_outputs)
# Note that usually one would have to put 0's in the attention_mask for x > input_ids.shape[-1] and x < cache_length.
# But since the decoder uses a causal mask, those positions are masked anyways.
# Thus we can create a single static attention_mask here, which is more efficient for compilation
extended_attention_mask = jnp.ones((batch_size, max_length), dtype="i4")
if decoder_attention_mask is not None:
position_ids = decoder_attention_mask.cumsum(axis=-1) - 1
extended_attention_mask = lax.dynamic_update_slice(extended_attention_mask, decoder_attention_mask, (0, 0))
else:
position_ids = jnp.broadcast_to(jnp.arange(seq_length, dtype="i4")[None, :], (batch_size, seq_length))
return {
"past_key_values": past_key_values,
"encoder_outputs": encoder_outputs,
"encoder_attention_mask": attention_mask,
"decoder_attention_mask": extended_attention_mask,
"decoder_position_ids": position_ids,
}
def update_inputs_for_generation(self, model_outputs, model_kwargs):
model_kwargs["past_key_values"] = model_outputs.past_key_values
model_kwargs["decoder_position_ids"] = model_kwargs["decoder_position_ids"][:, -1:] + 1
return model_kwargs
FLAX_BLENDERBOT_CONDITIONAL_GENERATION_DOCSTRING = r"""
Returns:
Conversation example::
```py
>>> from transformers import AutoTokenizer, FlaxBlenderbotForConditionalGeneration
>>> model = FlaxBlenderbotForConditionalGeneration.from_pretrained("facebook/blenderbot-400M-distill")
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/blenderbot-400M-distill")
>>> UTTERANCE = "My friends are cool but they eat too many carbs."
>>> inputs = tokenizer([UTTERANCE], max_length=1024, return_tensors="np")
>>> # Generate Reply
>>> reply_ids = model.generate(inputs["input_ids"], num_beams=4, max_length=5, early_stopping=True).sequences
>>> print([tokenizer.decode(g, skip_special_tokens=True, clean_up_tokenization_spaces=False) for g in reply_ids])
```
"""
overwrite_call_docstring(
FlaxBlenderbotForConditionalGeneration,
BLENDERBOT_INPUTS_DOCSTRING + FLAX_BLENDERBOT_CONDITIONAL_GENERATION_DOCSTRING,
)
append_replace_return_docstrings(
FlaxBlenderbotForConditionalGeneration, output_type=FlaxSeq2SeqLMOutput, config_class=_CONFIG_FOR_DOC
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/blenderbot/tokenization_blenderbot_fast.py | # coding=utf-8
# Copyright 2021 The Facebook Inc. and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Fast Tokenization class for Blenderbot."""
import json
from typing import List, Optional, Tuple
from tokenizers import pre_tokenizers, processors
from ...tokenization_utils_base import AddedToken, BatchEncoding
from ...tokenization_utils_fast import PreTrainedTokenizerFast
from ...utils import logging
from .tokenization_blenderbot import BlenderbotTokenizer
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {
"vocab_file": "vocab.json",
"merges_file": "merges.txt",
"tokenizer_config_file": "tokenizer_config.json",
}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {"facebook/blenderbot-3B": "https://huggingface.co/facebook/blenderbot-3B/resolve/main/vocab.json"},
"merges_file": {"facebook/blenderbot-3B": "https://huggingface.co/facebook/blenderbot-3B/resolve/main/merges.txt"},
"tokenizer_config_file": {
"facebook/blenderbot-3B": "https://huggingface.co/facebook/blenderbot-3B/resolve/main/tokenizer_config.json"
},
}
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {"facebook/blenderbot-3B": 128}
class BlenderbotTokenizerFast(PreTrainedTokenizerFast):
"""
Construct a "fast" Blenderbot tokenizer (backed by HuggingFace's *tokenizers* library), derived from the GPT-2
tokenizer, using byte-level Byte-Pair-Encoding.
This tokenizer has been trained to treat spaces like parts of the tokens (a bit like sentencepiece) so a word will
be encoded differently whether it is at the beginning of the sentence (without space) or not:
```python
>>> from transformers import BlenderbotTokenizerFast
>>> tokenizer = BlenderbotTokenizerFast.from_pretrained("facebook/blenderbot-3B")
>>> tokenizer("Hello world")["input_ids"]
[6950, 1085, 2]
>>> tokenizer(" Hello world")["input_ids"]
[6950, 1085, 2]
```
You can get around that behavior by passing `add_prefix_space=True` when instantiating this tokenizer or when you
call it on some text, but since the model was not pretrained this way, it might yield a decrease in performance.
<Tip>
When used with `is_split_into_words=True`, this tokenizer needs to be instantiated with `add_prefix_space=True`.
</Tip>
This tokenizer inherits from [`PreTrainedTokenizerFast`] which contains most of the main methods. Users should
refer to this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
Path to the vocabulary file.
merges_file (`str`):
Path to the merges file.
errors (`str`, *optional*, defaults to `"replace"`):
Paradigm to follow when decoding bytes to UTF-8. See
[bytes.decode](https://docs.python.org/3/library/stdtypes.html#bytes.decode) for more information.
bos_token (`str`, *optional*, defaults to `"<s>"`):
The beginning of sequence token that was used during pretraining. Can be used a sequence classifier token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the beginning of
sequence. The token used is the `cls_token`.
</Tip>
eos_token (`str`, *optional*, defaults to `"</s>"`):
The end of sequence token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the end of sequence.
The token used is the `sep_token`.
</Tip>
sep_token (`str`, *optional*, defaults to `"</s>"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
cls_token (`str`, *optional*, defaults to `"<s>"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
mask_token (`str`, *optional*, defaults to `"<mask>"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
add_prefix_space (`bool`, *optional*, defaults to `False`):
Whether or not to add an initial space to the input. This allows to treat the leading word just as any
other word. (Blenderbot tokenizer detect beginning of words by the preceding space).
trim_offsets (`bool`, *optional*, defaults to `True`):
Whether the post processing step should trim offsets to avoid including whitespaces.
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
model_input_names = ["input_ids", "attention_mask"]
slow_tokenizer_class = BlenderbotTokenizer
# Copied from transformers.models.roberta.tokenization_roberta_fast.RobertaTokenizerFast.__init__ with Roberta->Blenderbot, RoBERTa->Blenderbot
def __init__(
self,
vocab_file=None,
merges_file=None,
tokenizer_file=None,
errors="replace",
bos_token="<s>",
eos_token="</s>",
sep_token="</s>",
cls_token="<s>",
unk_token="<unk>",
pad_token="<pad>",
mask_token="<mask>",
add_prefix_space=False,
trim_offsets=True,
**kwargs,
):
mask_token = (
AddedToken(mask_token, lstrip=True, rstrip=False, normalized=False)
if isinstance(mask_token, str)
else mask_token
)
super().__init__(
vocab_file,
merges_file,
tokenizer_file=tokenizer_file,
errors=errors,
bos_token=bos_token,
eos_token=eos_token,
sep_token=sep_token,
cls_token=cls_token,
unk_token=unk_token,
pad_token=pad_token,
mask_token=mask_token,
add_prefix_space=add_prefix_space,
trim_offsets=trim_offsets,
**kwargs,
)
pre_tok_state = json.loads(self.backend_tokenizer.pre_tokenizer.__getstate__())
if pre_tok_state.get("add_prefix_space", add_prefix_space) != add_prefix_space:
pre_tok_class = getattr(pre_tokenizers, pre_tok_state.pop("type"))
pre_tok_state["add_prefix_space"] = add_prefix_space
self.backend_tokenizer.pre_tokenizer = pre_tok_class(**pre_tok_state)
self.add_prefix_space = add_prefix_space
tokenizer_component = "post_processor"
tokenizer_component_instance = getattr(self.backend_tokenizer, tokenizer_component, None)
if tokenizer_component_instance:
state = json.loads(tokenizer_component_instance.__getstate__())
# The lists 'sep' and 'cls' must be cased in tuples for the object `post_processor_class`
if "sep" in state:
state["sep"] = tuple(state["sep"])
if "cls" in state:
state["cls"] = tuple(state["cls"])
changes_to_apply = False
if state.get("add_prefix_space", add_prefix_space) != add_prefix_space:
state["add_prefix_space"] = add_prefix_space
changes_to_apply = True
if state.get("trim_offsets", trim_offsets) != trim_offsets:
state["trim_offsets"] = trim_offsets
changes_to_apply = True
if changes_to_apply:
component_class = getattr(processors, state.pop("type"))
new_value = component_class(**state)
setattr(self.backend_tokenizer, tokenizer_component, new_value)
@property
# Copied from transformers.models.roberta.tokenization_roberta_fast.RobertaTokenizerFast.mask_token with Roberta->Blenderbot, RoBERTa->Blenderbot
def mask_token(self) -> str:
"""
`str`: Mask token, to use when training a model with masked-language modeling. Log an error if used while not
having been set.
Blenderbot tokenizer has a special mask token to be usable in the fill-mask pipeline. The mask token will greedily
comprise the space before the *<mask>*.
"""
if self._mask_token is None:
if self.verbose:
logger.error("Using mask_token, but it is not set yet.")
return None
return str(self._mask_token)
@mask_token.setter
def mask_token(self, value):
"""
Overriding the default behavior of the mask token to have it eat the space before it.
This is needed to preserve backward compatibility with all the previously used models based on Roberta.
"""
# Mask token behave like a normal word, i.e. include the space before it
# So we set lstrip to True
value = AddedToken(value, lstrip=True, rstrip=False) if isinstance(value, str) else value
self._mask_token = value
# Copied from transformers.models.roberta.tokenization_roberta_fast.RobertaTokenizerFast._batch_encode_plus with Roberta->Blenderbot, RoBERTa->Blenderbot
def _batch_encode_plus(self, *args, **kwargs) -> BatchEncoding:
is_split_into_words = kwargs.get("is_split_into_words", False)
assert self.add_prefix_space or not is_split_into_words, (
f"You need to instantiate {self.__class__.__name__} with add_prefix_space=True "
"to use it with pretokenized inputs."
)
return super()._batch_encode_plus(*args, **kwargs)
# Copied from transformers.models.roberta.tokenization_roberta_fast.RobertaTokenizerFast._encode_plus with Roberta->Blenderbot, RoBERTa->Blenderbot
def _encode_plus(self, *args, **kwargs) -> BatchEncoding:
is_split_into_words = kwargs.get("is_split_into_words", False)
assert self.add_prefix_space or not is_split_into_words, (
f"You need to instantiate {self.__class__.__name__} with add_prefix_space=True "
"to use it with pretokenized inputs."
)
return super()._encode_plus(*args, **kwargs)
# Copied from transformers.models.roberta.tokenization_roberta_fast.RobertaTokenizerFast.save_vocabulary with Roberta->Blenderbot, RoBERTa->Blenderbot
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
files = self._tokenizer.model.save(save_directory, name=filename_prefix)
return tuple(files)
# Copied from transformers.models.roberta.tokenization_roberta_fast.RobertaTokenizerFast.create_token_type_ids_from_sequences with Roberta->Blenderbot, RoBERTa->Blenderbot
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. Blenderbot does not
make use of token type ids, therefore a list of zeros is returned.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of zeros.
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return len(cls + token_ids_0 + sep) * [0]
return len(cls + token_ids_0 + sep + sep + token_ids_1 + sep) * [0]
def build_inputs_with_special_tokens(self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None):
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. A Blenderbot sequence has the following format:
- single sequence: ` X </s>`
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added
token_ids_1 (`List[int]`, *optional*):
Will be ignored
Returns:
`List[int]`: list of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
return token_ids_0 + [self.eos_token_id]
@property
# Copied from transformers.models.blenderbot.tokenization_blenderbot.BlenderbotTokenizer.default_chat_template
def default_chat_template(self):
"""
A very simple chat template that just adds whitespace between messages.
"""
logger.warning_once(
"\nNo chat template is defined for this tokenizer - using the default template "
f"for the {self.__class__.__name__} class. If the default is not appropriate for "
"your model, please set `tokenizer.chat_template` to an appropriate template. "
"See https://huggingface.co/docs/transformers/main/chat_templating for more information.\n"
)
return (
"{% for message in messages %}"
"{% if message['role'] == 'user' %}{{ ' ' }}{% endif %}"
"{{ message['content'] }}"
"{% if not loop.last %}{{ ' ' }}{% endif %}"
"{% endfor %}"
"{{ eos_token }}"
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/cpmant/configuration_cpmant.py | # coding=utf-8
# Copyright 2022 The OpenBMB Team and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" CPMAnt model configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
CPMANT_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"openbmb/cpm-ant-10b": "https://huggingface.co/openbmb/cpm-ant-10b/blob/main/config.json"
# See all CPMAnt models at https://huggingface.co/models?filter=cpmant
}
class CpmAntConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`CpmAntModel`]. It is used to instantiate an
CPMAnt model according to the specified arguments, defining the model architecture. Instantiating a configuration
with the defaults will yield a similar configuration to that of the CPMAnt
[openbmb/cpm-ant-10b](https://huggingface.co/openbmb/cpm-ant-10b) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 30720):
Vocabulary size of the CPMAnt model. Defines the number of different tokens that can be represented by the
`input` passed when calling [`CpmAntModel`].
hidden_size (`int`, *optional*, defaults to 4096):
Dimension of the encoder layers.
num_attention_heads (`int`, *optional*, defaults to 32):
Number of attention heads in the Transformer encoder.
dim_head (`int`, *optional*, defaults to 128):
Dimension of attention heads for each attention layer in the Transformer encoder.
dim_ff (`int`, *optional*, defaults to 10240):
Dimension of the "intermediate" (i.e., feed-forward) layer in the Transformer encoder.
num_hidden_layers (`int`, *optional*, defaults to 48):
Number of layers of the Transformer encoder.
dropout_p (`float`, *optional*, defaults to 0.0):
The dropout probabilitiy for all fully connected layers in the embeddings, encoder.
position_bias_num_buckets (`int`, *optional*, defaults to 512):
The number of position_bias buckets.
position_bias_max_distance (`int`, *optional*, defaults to 2048):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
eps (`float`, *optional*, defaults to 1e-06):
The epsilon used by the layer normalization layers.
init_std (`float`, *optional*, defaults to 1.0):
Initialize parameters with std = init_std.
prompt_types (`int`, *optional*, defaults to 32):
The type of prompt.
prompt_length (`int`, *optional*, defaults to 32):
The length of prompt.
segment_types (`int`, *optional*, defaults to 32):
The type of segment.
use_cache (`bool`, *optional*, defaults to `True`):
Whether to use cache.
Example:
```python
>>> from transformers import CpmAntModel, CpmAntConfig
>>> # Initializing a CPMAnt cpm-ant-10b style configuration
>>> configuration = CpmAntConfig()
>>> # Initializing a model from the cpm-ant-10b style configuration
>>> model = CpmAntModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "cpmant"
def __init__(
self,
vocab_size: int = 30720,
hidden_size: int = 4096,
num_attention_heads: int = 32,
dim_head: int = 128,
dim_ff: int = 10240,
num_hidden_layers: int = 48,
dropout_p: int = 0.0,
position_bias_num_buckets: int = 512,
position_bias_max_distance: int = 2048,
eps: int = 1e-6,
init_std: float = 1.0,
prompt_types: int = 32,
prompt_length: int = 32,
segment_types: int = 32,
use_cache: bool = True,
**kwargs,
):
super().__init__(**kwargs)
self.prompt_types = prompt_types
self.prompt_length = prompt_length
self.segment_types = segment_types
self.hidden_size = hidden_size
self.num_attention_heads = num_attention_heads
self.dim_head = dim_head
self.dim_ff = dim_ff
self.num_hidden_layers = num_hidden_layers
self.position_bias_num_buckets = position_bias_num_buckets
self.position_bias_max_distance = position_bias_max_distance
self.dropout_p = dropout_p
self.eps = eps
self.use_cache = use_cache
self.vocab_size = vocab_size
self.init_std = init_std
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/cpmant/tokenization_cpmant.py | # coding=utf-8
# Copyright 2022 The OpenBMB Team and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes for CPMAnt."""
import collections
import os
from typing import List, Optional, Tuple
from transformers.utils import is_jieba_available, requires_backends
if is_jieba_available():
import jieba
from ...tokenization_utils import PreTrainedTokenizer
from ...utils import logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "vocab.txt"}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {
"openbmb/cpm-ant-10b": "https://huggingface.co/openbmb/cpm-ant-10b/blob/main/vocab.txt",
},
}
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {
"openbmb/cpm-ant-10b": 1024,
}
def load_vocab(vocab_file):
"""Loads a vocabulary file into a dictionary."""
vocab = collections.OrderedDict()
with open(vocab_file, "r", encoding="utf-8") as reader:
tokens = reader.readlines()
for index, token in enumerate(tokens):
token = token.rstrip("\n")
vocab[token] = index
return vocab
class WordpieceTokenizer(object):
def __init__(self, vocab, unk_token="<unk>", max_input_chars_per_word=200):
self.vocab = vocab
self.unk_token = unk_token
self.max_input_chars_per_word = max_input_chars_per_word
def tokenize(self, token):
chars = list(token)
if len(chars) > self.max_input_chars_per_word:
return [self.unk_token]
start = 0
sub_tokens = []
while start < len(chars):
end = len(chars)
cur_substr = None
while start < end:
substr = "".join(chars[start:end])
if substr in self.vocab:
cur_substr = substr
break
end -= 1
if cur_substr is None:
sub_tokens.append(self.unk_token)
start += 1
else:
sub_tokens.append(cur_substr)
start = end
return sub_tokens
class CpmAntTokenizer(PreTrainedTokenizer):
"""
Construct a CPMAnt tokenizer. Based on byte-level Byte-Pair-Encoding.
Args:
vocab_file (`str`):
Path to the vocabulary file.
bod_token (`str`, *optional*, defaults to `"<d>"`):
The beginning of document token.
eod_token (`str`, *optional*, defaults to `"</d>"`):
The end of document token.
bos_token (`str`, *optional*, defaults to `"<s>"`):
The beginning of sequence token.
eos_token (`str`, *optional*, defaults to `"</s>"`):
The end of sequence token.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token.
line_token (`str`, *optional*, defaults to `"</n>"`):
The line token.
space_token (`str`, *optional*, defaults to `"</_>"`):
The space token.
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
model_input_names = ["input_ids", "attention_mask"]
add_prefix_space = False
def __init__(
self,
vocab_file,
bod_token="<d>",
eod_token="</d>",
bos_token="<s>",
eos_token="</s>",
pad_token="<pad>",
unk_token="<unk>",
line_token="</n>",
space_token="</_>",
padding_side="left",
**kwargs,
):
requires_backends(self, ["jieba"])
self.bod_token = bod_token
self.eod_token = eod_token
self.encoder = load_vocab(vocab_file)
self.encoder[" "] = self.encoder[space_token]
self.encoder["\n"] = self.encoder[line_token]
del self.encoder[space_token]
del self.encoder[line_token]
self.encoder = collections.OrderedDict(sorted(self.encoder.items(), key=lambda x: x[1]))
self.decoder = {v: k for k, v in self.encoder.items()}
self.wordpiece_tokenizer = WordpieceTokenizer(vocab=self.encoder, unk_token=unk_token)
super().__init__(
bod_token=bod_token,
eod_token=eod_token,
bos_token=bos_token,
eos_token=eos_token,
pad_token=pad_token,
unk_token=unk_token,
line_token=line_token,
space_token=space_token,
padding_side=padding_side,
**kwargs,
)
@property
def bod_token_id(self):
return self.encoder[self.bod_token]
@property
def eod_token_id(self):
return self.encoder[self.eod_token]
@property
def newline_id(self):
return self.encoder["\n"]
@property
def vocab_size(self) -> int:
return len(self.encoder)
def get_vocab(self):
return dict(self.encoder, **self.added_tokens_encoder)
def _tokenize(self, text):
"""Tokenize a string."""
output_tokens = []
for x in jieba.cut(text, cut_all=False):
output_tokens.extend(self.wordpiece_tokenizer.tokenize(x))
return output_tokens
def _decode(self, token_ids, **kwargs):
"""Decode ids into a string."""
token_ids = [i for i in token_ids if i >= 0]
token_ids = [
x for x in token_ids if x != self.pad_token_id and x != self.eos_token_id and x != self.bos_token_id
]
return super()._decode(token_ids, **kwargs)
def check(self, token):
return token in self.encoder
def convert_tokens_to_string(self, tokens: List[str]) -> str:
return "".join(tokens)
def _convert_token_to_id(self, token):
"""Converts a token (str) in an id using the vocab."""
return self.encoder.get(token, self.encoder.get(self.unk_token))
def _convert_id_to_token(self, index):
"""Converts an index (integer) in a token (str) using the vocab."""
return self.decoder.get(index, self.unk_token)
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if os.path.isdir(save_directory):
vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
else:
vocab_file = (filename_prefix + "-" if filename_prefix else "") + save_directory
index = 0
if " " in self.encoder:
self.encoder["</_>"] = self.encoder[" "]
del self.encoder[" "]
if "\n" in self.encoder:
self.encoder["</n>"] = self.encoder["\n"]
del self.encoder["\n"]
self.encoder = collections.OrderedDict(sorted(self.encoder.items(), key=lambda x: x[1]))
with open(vocab_file, "w", encoding="utf-8") as writer:
for token, token_index in self.encoder.items():
if index != token_index:
logger.warning(
f"Saving vocabulary to {vocab_file}: vocabulary indices are not consecutive."
" Please check that the vocabulary is not corrupted!"
)
index = token_index
writer.write(token + "\n")
index += 1
return (vocab_file,)
def build_inputs_with_special_tokens(self, token_ids_0: List[int], token_ids_1: List[int] = None) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. A CPMAnt sequence has the following format:
- single sequence: `[BOS] Sequence`.
Args:
token_ids_0 (`List[int]`): The first tokenized sequence that special tokens will be added.
token_ids_1 (`List[int]`): The optional second tokenized sequence that special tokens will be added.
Returns:
`List[int]`: The model input with special tokens.
"""
if token_ids_1 is None:
return [self.bos_token_id] + token_ids_0
return [self.bos_token_id] + token_ids_0 + [self.bos_token_id] + token_ids_1
def get_special_tokens_mask(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieve sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer `prepare_for_model` method.
Args:
token_ids_0 (`List[int]`): List of IDs.
token_ids_1 (`List[int]`, *optional*): Optional second list of IDs for sequence pairs.
already_has_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
`List[int]`: A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
return super().get_special_tokens_mask(
token_ids_0=token_ids_0, token_ids_1=token_ids_1, already_has_special_tokens=True
)
if token_ids_1 is not None:
return [1] + ([0] * len(token_ids_0)) + [1] + ([0] * len(token_ids_1))
return [1] + ([0] * len(token_ids_0))
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/cpmant/modeling_cpmant.py | # coding=utf-8
# Copyright 2022 The OpenBMB Team and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch CPMAnt"""
import math
from typing import List, Optional, Tuple, Union
import torch
import torch.nn.functional as F
import torch.utils.checkpoint
from torch import nn
from torch.nn import CrossEntropyLoss
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutputWithPast, CausalLMOutputWithPast
from ...modeling_utils import PreTrainedModel
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_cpmant import CpmAntConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "openbmb/cpm-ant-10b"
_CONFIG_FOR_DOC = "CpmAntConfig"
CPMANT_PRETRAINED_MODEL_ARCHIVE_LIST = [
"openbmb/cpm-ant-10b",
# See all CPMAnt models at https://huggingface.co/models?filter=cpmant
]
class CpmAntLayerNorm(nn.Module):
"""
We use Root Mean Square (RMS) Layer Normalization, please see https://arxiv.org/abs/1910.07467 for details."
"""
def __init__(self, config: CpmAntConfig):
super().__init__()
self.eps = config.eps
self.dim_norm = config.hidden_size
self.weight = nn.Parameter(torch.empty(config.hidden_size))
def forward(self, hidden_states: torch.Tensor):
"""
Args:
hidden_states (`torch.Tensor` of shape `(batch, seq_len, dim_in)`)
"""
if hidden_states.size(-1) != self.dim_norm:
raise AssertionError("hidden_states.size(-1) != self.dim_norm")
old_dtype = hidden_states.dtype
variance = hidden_states.to(torch.float32).pow(2).mean(dim=-1, keepdim=True)
hidden_states = (hidden_states * torch.rsqrt(variance + self.eps)).to(old_dtype) * self.weight
return hidden_states
class CpmAntAttention(nn.Module):
def __init__(self, config: CpmAntConfig):
super().__init__()
self.dim_model = config.hidden_size
self.num_heads = config.num_attention_heads
self.dim_head = config.dim_head
self.project_q = nn.Linear(self.dim_model, self.num_heads * self.dim_head, bias=False)
self.project_k = nn.Linear(self.dim_model, self.num_heads * self.dim_head, bias=False)
self.project_v = nn.Linear(self.dim_model, self.num_heads * self.dim_head, bias=False)
self.attention_out = nn.Linear(self.num_heads * self.dim_head, self.dim_model, bias=False)
self.softmax = torch.nn.Softmax(dim=-1)
if config.dropout_p is not None:
self.dropout = torch.nn.Dropout(p=config.dropout_p)
else:
self.dropout = None
def forward(
self,
hidden_q: torch.Tensor,
hidden_kv: torch.Tensor,
attention_mask: torch.BoolTensor,
position_bias: torch.Tensor,
output_attentions: Optional[bool] = False,
past_key_values: Optional[Tuple[torch.Tensor, torch.Tensor]] = None,
use_cache: Optional[bool] = None,
):
"""
Args:
hidden_q (`torch.Tensor`):
Input of transformer block(self-attention block). It can be the raw embedding of a batch of sequences.
hidden_kv (`torch.Tensor` of shape `(batch, len_k, dim_model)`)):
Tensor *key_value* and *query* of shape `(batch, len_k, dim_model)`
attention_mask (`torch.Tensor` of shape `(batch, len_seq, len_seq)`):
Avoid invalid areas to participate in the calculation of self-attention.
position_bias (`torch.Tensor` of shape `(batch, len_seq, len_seq)`):
Provide positional information to self-attention block.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers.
past_key_values (`Tuple[torch.Tensor, torch.Tensor]`, *optional*):
Cached past key and value projection states.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding
(see `past_key_values`).
"""
batch_size = hidden_q.size(0)
len_q = hidden_q.size(1)
len_k = hidden_kv.size(1)
query = self.project_q(hidden_q)
key = self.project_k(hidden_kv)
value = self.project_v(hidden_kv)
query = query.view(batch_size, len_q, self.num_heads, self.dim_head).permute(0, 2, 1, 3)
key = key.view(batch_size, len_k, self.num_heads, self.dim_head).permute(0, 2, 1, 3)
value = value.view(batch_size, len_k, self.num_heads, self.dim_head).permute(0, 2, 1, 3)
if past_key_values is not None:
key = torch.cat([past_key_values[0], key], dim=-2)
value = torch.cat([past_key_values[1], value], dim=-2)
len_k = key.size(-2)
# (batch_size, num_heads, len_q, dim_head) @ (batch_size, num_heads, dim_head, len_k) -> (batch_size, num_heads, len_q, len_k)
score = torch.matmul(query, key.transpose(-1, -2)) / math.sqrt(self.dim_head)
score = score + position_bias
score = torch.masked_fill(
score,
attention_mask.view(batch_size, 1, len_q, len_k) == torch.tensor(False),
torch.scalar_tensor(float("-inf"), device=score.device, dtype=score.dtype),
)
score = self.softmax(score)
score = torch.masked_fill(
score,
attention_mask.view(batch_size, 1, len_q, len_k) == torch.tensor(False),
torch.scalar_tensor(0, device=score.device, dtype=score.dtype),
)
if output_attentions:
attn_weights = score
else:
attn_weights = None
if self.dropout is not None:
score = self.dropout(score)
# (batch_size, num_heads, len_q, len_k) @ (batch_size, num_heads, len_k, dim_head) -> (batch_size, num_heads, len_q, dim_head)
score = torch.matmul(score, value)
score = score.view(batch_size, self.num_heads, len_q, self.dim_head).permute(0, 2, 1, 3)
score = score.contiguous().view(batch_size, len_q, self.num_heads * self.dim_head)
score = self.attention_out(score)
past_key_values = None
if use_cache:
past_key_values = (key, value)
return score, attn_weights, past_key_values
class CpmAntSelfAttentionBlock(nn.Module):
def __init__(self, config: CpmAntConfig):
super().__init__()
self.layernorm_before_attention = CpmAntLayerNorm(config)
self.self_attention = CpmAntAttention(config)
if config.dropout_p:
self.dropout = torch.nn.Dropout(config.dropout_p)
else:
self.dropout = None
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: torch.Tensor,
position_bias: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = False,
past_key_values: Optional[Tuple[torch.Tensor, torch.Tensor]] = None,
use_cache: Optional[bool] = None,
):
"""
Args:
hidden_states (`torch.Tensor` of shape `(batch, len_seq, dim_model)`):
Input of transformer block(self-attention block). It can be the raw embedding of a batch of sequences.
attention_mask (`torch.Tensor` of shape `(batch, len_seq, len_seq)`):
Avoid invalid areas to participate in the calculation of self-attention.
position_bias (`torch.Tensor` of shape `(batch, len_seq, len_seq)`):
Provide positional information to self-attention block.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers.
past_key_values (`Tuple(torch.FloatTensor)`, *optional*):
Cached past key and value projection states.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding
(see `past_key_values`).
"""
outputs = self.layernorm_before_attention(hidden_states)
outputs = self.self_attention(
outputs, outputs, attention_mask, position_bias, output_attentions, past_key_values, use_cache
)
outputs, attn_weights, current_key_value = outputs
if self.dropout is not None:
outputs = self.dropout(outputs)
hidden_states = hidden_states + outputs
return hidden_states, attn_weights, current_key_value
class CpmAntDenseGatedACT(nn.Module):
def __init__(self, config: CpmAntConfig):
super().__init__()
self.w_0 = nn.Linear(config.hidden_size, config.dim_ff, bias=False)
self.w_1 = nn.Linear(config.hidden_size, config.dim_ff, bias=False)
self.act = torch.nn.GELU()
def forward(self, hidden_states: torch.Tensor):
"""Transform an input tensor from one feature space to another via a nonlinear operation
Args:
hidden_states (`torch.Tensor` of shape `(batch, seq_len, dim_in)`)
"""
gate_score = self.act(self.w_0(hidden_states))
hidden_states = self.w_1(hidden_states)
hidden_states = gate_score * hidden_states
return hidden_states
class CpmAntFeedForward(nn.Module):
def __init__(self, config: CpmAntConfig):
super().__init__()
self.w_in = CpmAntDenseGatedACT(config)
if config.dropout_p is not None:
self.dropout = torch.nn.Dropout(config.dropout_p)
else:
self.dropout = None
self.w_out = nn.Linear(config.dim_ff, config.hidden_size, bias=False)
def forward(self, hidden_states: torch.Tensor):
"""
Args:
hidden_states (`torch.Tensor` of shape `(batch, seq_len, dim_in)`)
"""
hidden_states = self.w_in(hidden_states)
if self.dropout is not None:
hidden_states = self.dropout(hidden_states)
hidden_states = self.w_out(hidden_states)
return hidden_states
class CpmAntFFNBlock(nn.Module):
def __init__(self, config: CpmAntConfig):
super().__init__()
self.layernorm_before_ffn = CpmAntLayerNorm(config)
self.ffn = CpmAntFeedForward(config)
if config.dropout_p:
self.dropout = torch.nn.Dropout(config.dropout_p)
else:
self.dropout = None
def forward(
self,
hidden_states: torch.Tensor,
):
"""
Args:
hidden_states (`torch.Tensor` of shape `(batch, len_seq, dim_model)`):
Hidden states before feed forward layer.
"""
ln_outputs = self.layernorm_before_ffn(hidden_states)
outputs = self.ffn(ln_outputs)
if self.dropout is not None:
outputs = self.dropout(outputs)
hidden_states = hidden_states + outputs
return hidden_states
class CpmAntTransformerBlock(nn.Module):
def __init__(self, config: CpmAntConfig):
super().__init__()
self.self_att = CpmAntSelfAttentionBlock(config)
self.ffn = CpmAntFFNBlock(config)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: torch.Tensor,
position_bias: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = False,
past_key_values: Optional[Tuple[torch.Tensor, torch.Tensor]] = None,
use_cache: Optional[bool] = None,
):
"""
Args:
hidden_states (`torch.Tensor`):
Input to the layer of shape `(batch, seq_len, dim_model)`
attention_mask (`torch.Tensor`):
Avoid invalid areas to participate in the calculation of shape `(batch, seq_len, seq_len)`
position_bias (`torch.Tensor`):
Provides position information to attention mechanism of shape `(num_heads, seq_len, seq_len)`
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers.
past_key_values (`Tuple[torch.Tensor, torch.Tensor])`, *optional*):
Cached past key and value projection states
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding
(see `past_key_values`).
"""
hidden_states = self.self_att(
hidden_states,
attention_mask=attention_mask,
position_bias=position_bias,
output_attentions=output_attentions,
past_key_values=past_key_values,
use_cache=use_cache,
)
hidden_states, attn_weights, current_key_value = hidden_states
hidden_states = self.ffn(hidden_states)
return hidden_states, attn_weights, current_key_value
class CpmAntEncoder(nn.Module):
def __init__(self, config: CpmAntConfig):
super().__init__()
self.num_layers = config.num_hidden_layers
self.layers = nn.ModuleList([CpmAntTransformerBlock(config) for ith in range(self.num_layers)])
self.output_layernorm = CpmAntLayerNorm(config)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: torch.Tensor,
position_bias: torch.Tensor,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
past_key_values: Optional[Tuple[torch.Tensor, torch.Tensor]] = None,
use_cache: Optional[bool] = None,
):
"""
Args:
hidden_states (`torch.Tensor`):
Input to the layer of shape `(batch, seq_len, dim_model)`
attention_mask (`torch.Tensor`):
Avoid invalid areas to participate in the calculation of shape `(batch, seq_len, seq_len)`
position_bias (`torch.Tensor`):
Provides position information to attention mechanism of shape `(num_heads, seq_len, seq_len)`
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers.
past_key_values (`Tuple[torch.Tensor, torch.Tensor])`, *optional*):
Cached past key and value projection states
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding
(see `past_key_values`).
"""
all_hidden_states = () if output_hidden_states else None
all_self_attns = () if output_attentions else None
current_key_values = () if use_cache else None
for i, layer in enumerate(self.layers):
if output_hidden_states:
all_hidden_states += (hidden_states,)
layer_outputs = layer(
hidden_states,
attention_mask,
position_bias,
output_attentions=output_attentions,
past_key_values=past_key_values[i] if past_key_values else None,
use_cache=use_cache,
)
hidden_states, attn_weights, current_key_value = layer_outputs
if output_attentions:
all_self_attns += (attn_weights,)
if current_key_value is not None:
current_key_values = current_key_values + (current_key_value,)
hidden_states = self.output_layernorm(hidden_states)
if output_hidden_states:
all_hidden_states += (hidden_states,)
return hidden_states, current_key_values, all_hidden_states, all_self_attns
# Copied from transformers.models.bert.modeling_bert.BertIntermediate with Bert->CPMAnt
class CpmAntIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
class CpmAntSegmentPositionEmbedding(nn.Module):
def __init__(self, config: CpmAntConfig):
super().__init__()
self.num_heads = config.num_attention_heads
self.num_buckets = config.position_bias_num_buckets
self.max_distance = config.position_bias_max_distance
self.num_segments = config.segment_types
self.relative_attention_bias = nn.Parameter(
torch.empty(
config.segment_types * config.segment_types + config.position_bias_num_buckets,
config.num_attention_heads,
)
)
def forward(
self,
key_pos: torch.Tensor,
query_pos: torch.Tensor,
key_segment: torch.Tensor,
query_segment: torch.Tensor,
):
with torch.no_grad():
batch = key_pos.size(0)
keylen = key_pos.size(1)
querylen = query_pos.size(1)
if key_pos.size(0) != query_pos.size(0):
raise AssertionError(
f"key_pos.size(0) should be equal to query_pos.size(0), but got {key_pos.size(0)} and {query_pos.size(0)}!"
)
if keylen != key_segment.size(1) or querylen != query_segment.size(1):
raise AssertionError(
f"keylen should be equal to key_segment.size(1), but got {keylen} and {key_segment.size(1)}!"
)
if querylen != query_segment.size(1):
raise AssertionError(
f"querylen should be equal to query_segment.size(1), but got {querylen} and {query_segment.szie(1)}!"
)
key_pos = key_pos.view(batch, -1, keylen)
query_pos = query_pos.view(batch, querylen, -1)
key_segment = key_segment.view(batch, -1, keylen)
query_segment = query_segment.view(batch, querylen, -1)
relative_position_bucket = self._segment_relative_position_bucket(query_segment, key_segment)
relative_position_bucket = relative_position_bucket + self.num_buckets
# (batch, len_q, len_k)
absolute_position_bucket = self._position_bucket(
torch.arange(keylen, dtype=torch.int32, device=relative_position_bucket.device)[None, :]
- torch.arange(querylen, dtype=torch.int32, device=relative_position_bucket.device)[:, None],
num_buckets=self.num_buckets,
max_distance=self.max_distance,
)
relative_position_bucket = torch.where(
(key_segment == query_segment),
absolute_position_bucket[None, :, :],
relative_position_bucket,
)
# (batch, len_q, len_k, num_heads)
embeds = F.embedding(relative_position_bucket, self.relative_attention_bias)
# (batch, num_heads, len_q, len_k)
embeds = embeds.permute(0, 3, 1, 2).contiguous()
return embeds
def _segment_relative_position_bucket(self, query_segment, key_segment):
return query_segment * self.num_segments + key_segment
def _position_bucket(self, relative_position, num_buckets=32, max_distance=128):
relative_buckets = 0
# always bidirectional in CPMAnt
num_buckets //= 2
relative_buckets = (relative_position > 0).to(torch.int32) * num_buckets
relative_position = torch.abs(relative_position)
max_exact = num_buckets // 2
is_small = relative_position < max_exact
relative_postion_if_large = max_exact + (
torch.log(relative_position.float() / max_exact)
/ math.log(max_distance / max_exact)
* (num_buckets - max_exact)
).to(torch.int32)
relative_postion_if_large = torch.min(
relative_postion_if_large,
torch.full_like(relative_postion_if_large, num_buckets - 1),
)
relative_buckets += torch.where(is_small, relative_position.to(torch.int32), relative_postion_if_large)
return relative_buckets
# Copied from transformers.models.bert.modeling_bert.BertOutput with Bert->CPMAnt
class CpmAntOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
class CpmAntPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = CpmAntConfig
base_model_prefix = "cpmant"
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, nn.Linear):
module.weight.data.normal_(mean=0.0, std=self.config.init_std)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.init_std)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
elif isinstance(module, CpmAntLayerNorm):
module.weight.data.fill_(1.0)
elif isinstance(module, CpmAntSegmentPositionEmbedding):
module.relative_attention_bias.data.normal_(mean=0.0, std=self.config.init_std)
CPMANT_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) sub-class. Use
it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters
config ([`~CpmAntConfig`]): Model configuration class with all the parameters of the
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
CPMANT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.Tensor` of shape `(batch_size, seq_len)`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`CPMAntTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
Contains pre-computed hidden-states (key and values in the self-attention blocks and in the cross-attention
blocks) that can be used (see `past_key_values` input) to speed up sequential decoding.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare CPMAnt Model outputting raw hidden-states without any specific head on top.",
CPMANT_START_DOCSTRING,
)
class CpmAntModel(CpmAntPreTrainedModel):
def __init__(self, config: CpmAntConfig):
super().__init__(config)
self.encoder = CpmAntEncoder(config)
self.segment_embedding = nn.Embedding(config.segment_types, config.hidden_size)
self.input_embedding = nn.Embedding(
config.vocab_size + config.prompt_types * config.prompt_length, config.hidden_size
)
self.position_bias = CpmAntSegmentPositionEmbedding(config)
self.prompt_length = config.prompt_length
self.vocab_size = config.vocab_size
self.post_init()
def get_input_embeddings(self):
return self.input_embedding
def set_input_embeddings(self, embeddings, **kwargs):
self.input_embedding = embeddings
def _prepare_attention_mask(self, input_ids, span, context, length):
batch = input_ids.size(0)
seqlen = input_ids.size(1)
device = input_ids.device
directional_mask_2d = torch.arange(seqlen, device=device) <= torch.arange(seqlen, device=device).view(-1, 1)
attention_mask = context[:, None, :] | (
context[:, :, None].logical_not() & directional_mask_2d.view(1, seqlen, seqlen)
)
attention_mask = attention_mask & (span[:, None, :] == span[:, :, None])
# mask for left padding
mask_1d = (
torch.tensor(list(range(seqlen - self.prompt_length))[::-1], device=device)[None, :].repeat(batch, 1)
< length[:, None]
)
mask_1d = torch.cat((torch.ones(batch, self.prompt_length, device=device).bool(), mask_1d), dim=1)
attention_mask = mask_1d.view(batch, seqlen, 1) & mask_1d.view(batch, 1, seqlen) & attention_mask
return attention_mask
@add_start_docstrings_to_model_forward(CPMANT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithPast,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
past_key_values: Optional[Tuple[Tuple[torch.Tensor]]] = None,
use_cache: Optional[bool] = None,
return_dict: Optional[bool] = None,
**kwargs,
) -> Union[Tuple[torch.Tensor], BaseModelOutputWithPast]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
use_cache = use_cache if use_cache is not None else self.config.use_cache
# add prompts ahead
if input_ids.dtype != torch.int32:
input_ids = input_ids.to(torch.int32)
dtype, device = input_ids.dtype, input_ids.device
segment = torch.where(input_ids != 0, 2, 0).to(dtype=dtype, device=device)
length = (segment != 0).sum(-1).to(dtype=dtype, device=device)
input_ids = torch.cat(
(
torch.arange(
self.prompt_length * 2 + self.vocab_size,
self.prompt_length * 3 + self.vocab_size,
dtype=dtype,
device=device,
).repeat(input_ids.size(0), 1),
input_ids,
),
dim=1,
)
batch, seq_length = input_ids.size()
segment = torch.cat((torch.zeros(batch, self.prompt_length, dtype=dtype, device=device), segment), dim=1)
context = torch.full((batch, seq_length), 1, dtype=dtype, device=device)
position = torch.arange(seq_length, dtype=dtype, device=device).repeat(batch, 1)
span = torch.full((batch, seq_length), 0, dtype=dtype, device=device)
if past_key_values is None:
past_length = 0
past_key_values = tuple([None] * self.encoder.num_layers)
input_ids = input_ids.contiguous()
hidden_states = self.input_embedding(input_ids)
segment_states = self.segment_embedding(segment)
hidden_states = hidden_states + segment_states
else:
past_length = past_key_values[0][0].size(-2)
segment_states = self.segment_embedding(segment)
hidden_states = self.input_embedding(input_ids) + segment_states[:, -1:, :]
attention_mask = self._prepare_attention_mask(input_ids, span, context, length)
position_bias = self.position_bias(position, position, segment, segment)
attention_mask = attention_mask[:, past_length:, :]
position_bias = position_bias[:, :, past_length:, :]
hidden_states = hidden_states[:, past_length:, :]
hidden_states, present_key_values, all_hidden_states, all_attentions = self.encoder(
hidden_states,
attention_mask,
position_bias,
output_attentions,
output_hidden_states,
past_key_values,
use_cache,
)
if past_length == 0:
hidden_states = hidden_states[:, self.prompt_length :, :]
# drop the prompt
if all_attentions is not None:
new_attentions = ()
for attention in all_attentions:
new_attentions += (attention[:, :, self.prompt_length :, self.prompt_length :],)
all_attentions = new_attentions
if all_hidden_states is not None:
new_hidden_states = ()
for hidden_state in all_hidden_states:
new_hidden_states += (hidden_state[:, self.prompt_length :, :],)
all_hidden_states = new_hidden_states
if not return_dict:
return tuple(
v for v in [hidden_states, present_key_values, all_hidden_states, all_attentions] if v is not None
)
return BaseModelOutputWithPast(
last_hidden_state=hidden_states,
past_key_values=present_key_values,
hidden_states=all_hidden_states,
attentions=all_attentions,
)
@add_start_docstrings(
"""
The CPMAnt Model with a language modeling head on top (linear layer with weights tied to the input embeddings).
""",
CPMANT_START_DOCSTRING,
)
class CpmAntForCausalLM(CpmAntPreTrainedModel):
_tied_weights_keys = ["lm_head.weight"]
def __init__(self, config: CpmAntConfig):
super().__init__(config)
self.cpmant = CpmAntModel(config)
# lm_head.weight is tied to cpmant.input_embedding.weight
self.lm_head = nn.Linear(
config.hidden_size, config.vocab_size + config.prompt_types * config.prompt_length, bias=False
)
self.post_init()
@add_start_docstrings_to_model_forward(CPMANT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=CausalLMOutputWithPast,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
past_key_values: Optional[List[Tuple[torch.Tensor, torch.Tensor]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
labels: Optional[torch.Tensor] = None,
return_dict: Optional[bool] = None,
attention_mask: Optional[torch.Tensor] = None, # dummy parameter for text-generation pipeline
**kwargs,
) -> Union[Tuple, CausalLMOutputWithPast]:
r"""
Args:
input_ids (`torch.Tensor` of shape `(batch_size, seq_len)`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`CPMAntTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
Contains pre-computed hidden-states (key and values in the self-attention blocks and in the
cross-attention blocks) that can be used (see `past_key_values` input) to speed up sequential decoding.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding
(see `past_key_values`).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers.
labels (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
CPMAnt will process attention mask automatically, this parameter is a dummy parameter for
text-generation pipeline.
Example:
Text Generation with CpmAntForCausalLM.
```python
>>> from transformers import CPMAntTokenizer, CpmAntForCausalLM
>>> texts = "今天天气不错，"
>>> model = CpmAntForCausalLM.from_pretrained("openbmb/cpm-ant-10b")
>>> tokenizer = CPMAntTokenizer.from_pretrained("openbmb/cpm-ant-10b")
>>> input_ids = tokenizer(texts, return_tensors="pt")
>>> outputs = model.generate(**input_ids)
>>> output_texts = tokenizer.batch_decode(outputs)
>>> print(output_texts)
['今天天气不错，阳光明媚，我和妈妈一起去超市买东西。\n在超市里，我看到了一个很好玩的玩具，它的名字叫“机器人”。它有一个圆圆的脑袋，两只圆圆的眼睛，还有一个圆圆的']
```
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
model_output = self.cpmant(
input_ids, output_attentions, output_hidden_states, past_key_values, use_cache, return_dict
)
hidden_states = model_output.last_hidden_state if return_dict else model_output[0]
logits = self.lm_head(hidden_states)
loss = None
if labels is not None:
loss_func = CrossEntropyLoss()
loss = loss_func(logits.view(-1, logits.size(-1)), labels.view(-1))
if not return_dict:
output = (logits,) + model_output[1:]
return ((loss,) + output) if loss is not None else output
return CausalLMOutputWithPast(
loss=loss,
logits=logits,
past_key_values=model_output.past_key_values,
hidden_states=model_output.hidden_states,
attentions=model_output.attentions,
)
def get_input_embeddings(self):
return self.cpmant.input_embedding
def set_input_embeddings(self, embeddings):
self.cpmant.input_embedding = embeddings
def get_output_embeddings(self):
return self.lm_head
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
def prepare_inputs_for_generation(self, input_ids, **kwargs):
input_ids = input_ids.int()
# save the memory usage of dummy attention mask
if "attention_mask" in kwargs:
kwargs["attention_mask"] = torch.zeros(1, 1)
return {
"input_ids": input_ids,
"use_cache": kwargs["use_cache"],
"past_key_values": kwargs.get("past_key_values", None),
}
def _reorder_cache(self, past_key_values, beam_idx):
past_key_values = [list(each) if each is not None else each for each in past_key_values]
for key_value_layer in past_key_values:
key_value_layer[0] = key_value_layer[0][beam_idx]
key_value_layer[1] = key_value_layer[1][beam_idx]
return past_key_values
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/cpmant/__init__.py | # flake8: noqa
# There's no way to ignore "F401 '...' imported but unused" warnings in this
# module, but to preserve other warnings. So, don't check this module at all.
# Copyright 2022 The HuggingFace Team and The OpenBMB Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
# rely on isort to merge the imports
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_tokenizers_available, is_torch_available
_import_structure = {
"configuration_cpmant": ["CPMANT_PRETRAINED_CONFIG_ARCHIVE_MAP", "CpmAntConfig"],
"tokenization_cpmant": ["CpmAntTokenizer"],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_cpmant"] = [
"CPMANT_PRETRAINED_MODEL_ARCHIVE_LIST",
"CpmAntForCausalLM",
"CpmAntModel",
"CpmAntPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_cpmant import CPMANT_PRETRAINED_CONFIG_ARCHIVE_MAP, CpmAntConfig
from .tokenization_cpmant import CpmAntTokenizer
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_cpmant import (
CPMANT_PRETRAINED_MODEL_ARCHIVE_LIST,
CpmAntForCausalLM,
CpmAntModel,
CpmAntPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/vitdet/__init__.py | # Copyright 2023 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_torch_available,
)
_import_structure = {"configuration_vitdet": ["VITDET_PRETRAINED_CONFIG_ARCHIVE_MAP", "VitDetConfig"]}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_vitdet"] = [
"VITDET_PRETRAINED_MODEL_ARCHIVE_LIST",
"VitDetModel",
"VitDetPreTrainedModel",
"VitDetBackbone",
]
if TYPE_CHECKING:
from .configuration_vitdet import VITDET_PRETRAINED_CONFIG_ARCHIVE_MAP, VitDetConfig
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_vitdet import (
VITDET_PRETRAINED_MODEL_ARCHIVE_LIST,
VitDetBackbone,
VitDetModel,
VitDetPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/vitdet/modeling_vitdet.py | # coding=utf-8
# Copyright 2023 Meta AI and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch ViTDet backbone."""
import collections.abc
import math
from typing import Dict, List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from ...activations import ACT2FN
from ...modeling_outputs import BackboneOutput, BaseModelOutput
from ...modeling_utils import PreTrainedModel
from ...utils import (
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from ...utils.backbone_utils import BackboneMixin
from .configuration_vitdet import VitDetConfig
logger = logging.get_logger(__name__)
# General docstring
_CONFIG_FOR_DOC = "VitDetConfig"
VITDET_PRETRAINED_MODEL_ARCHIVE_LIST = [
"facebook/vit-det-base",
# See all ViTDet models at https://huggingface.co/models?filter=vitdet
]
class VitDetEmbeddings(nn.Module):
"""
This class turns `pixel_values` of shape `(batch_size, num_channels, height, width)` into the initial
`hidden_states` (patch embeddings) to be consumed by a Transformer.
"""
def __init__(self, config):
super().__init__()
image_size, patch_size = config.pretrain_image_size, config.patch_size
num_channels, hidden_size = config.num_channels, config.hidden_size
image_size = image_size if isinstance(image_size, collections.abc.Iterable) else (image_size, image_size)
patch_size = patch_size if isinstance(patch_size, collections.abc.Iterable) else (patch_size, patch_size)
num_patches = (image_size[1] // patch_size[1]) * (image_size[0] // patch_size[0])
self.image_size = image_size
self.patch_size = patch_size
self.num_channels = num_channels
self.num_patches = num_patches
if config.use_absolute_position_embeddings:
# Initialize absolute positional embedding with pretrain image size.
num_positions = num_patches + 1
self.position_embeddings = nn.Parameter(torch.zeros(1, num_positions, config.hidden_size))
else:
self.position_embeddings = None
self.projection = nn.Conv2d(num_channels, hidden_size, kernel_size=patch_size, stride=patch_size)
def get_absolute_positions(self, abs_pos_embeddings, has_cls_token, height, width):
"""
Calculate absolute positional embeddings. If needed, resize embeddings and remove cls_token dimension for the
original embeddings.
Args:
abs_pos_embeddings (`torch.Tensor`):
Absolute positional embeddings with (1, num_position, num_channels).
has_cls_token (`bool`):
If true, has 1 embedding in abs_pos_embeddings for cls token.
height (`int`):
Height of input image tokens.
width (`int`):
Width of input image tokens.
Returns:
Absolute positional embeddings after processing with shape (1, height, width, num_channels)
"""
if has_cls_token:
abs_pos_embeddings = abs_pos_embeddings[:, 1:]
num_position = abs_pos_embeddings.shape[1]
size = int(math.sqrt(num_position))
if size * size != num_position:
raise ValueError("Absolute position embeddings must be a square number.")
if size != height or size != width:
new_abs_pos_embeddings = nn.functional.interpolate(
abs_pos_embeddings.reshape(1, size, size, -1).permute(0, 3, 1, 2),
size=(height, width),
mode="bicubic",
align_corners=False,
)
return new_abs_pos_embeddings.permute(0, 2, 3, 1)
else:
return abs_pos_embeddings.reshape(1, height, width, -1)
def forward(self, pixel_values: torch.Tensor) -> torch.Tensor:
num_channels = pixel_values.shape[1]
if num_channels != self.num_channels:
raise ValueError(
"Make sure that the channel dimension of the pixel values match with the one set in the configuration."
f" Expected {self.num_channels} but got {num_channels}."
)
embeddings = self.projection(pixel_values)
if self.position_embeddings is not None:
# (batch_size, num_channels, height, width) -> (batch_size, height, width, num_channels)
embeddings = embeddings.permute(0, 2, 3, 1)
# add position embeddings
embeddings = embeddings + self.get_absolute_positions(
self.position_embeddings, True, embeddings.shape[1], embeddings.shape[2]
)
# (batch_size, height, width, num_channels) -> (batch_size, num_channels, height, width)
embeddings = embeddings.permute(0, 3, 1, 2)
return embeddings
def get_rel_pos(q_size, k_size, rel_pos):
"""
Get relative positional embeddings according to the relative positions of query and key sizes.
Args:
q_size (`int`):
Size of query q.
k_size (`int`):
Size of key k.
rel_pos (`torch.Tensor`):
Relative position embeddings (num_embeddings, num_channels).
Returns:
Extracted positional embeddings according to relative positions.
"""
max_rel_dist = int(2 * max(q_size, k_size) - 1)
# Interpolate rel pos if needed.
if rel_pos.shape[0] != max_rel_dist:
# Interpolate rel position embeddings.
rel_pos_resized = nn.functional.interpolate(
rel_pos.reshape(1, rel_pos.shape[0], -1).permute(0, 2, 1),
size=max_rel_dist,
mode="linear",
)
rel_pos_resized = rel_pos_resized.reshape(-1, max_rel_dist).permute(1, 0)
else:
rel_pos_resized = rel_pos
# Scale the coords with short length if shapes for q and k are different.
q_coords = torch.arange(q_size)[:, None] * max(k_size / q_size, 1.0)
k_coords = torch.arange(k_size)[None, :] * max(q_size / k_size, 1.0)
relative_coords = (q_coords - k_coords) + (k_size - 1) * max(q_size / k_size, 1.0)
return rel_pos_resized[relative_coords.long()]
def add_decomposed_relative_positions(attn, queries, rel_pos_h, rel_pos_w, q_size, k_size):
"""
Calculate decomposed Relative Positional Embeddings as introduced in
[MViT2](https://github.com/facebookresearch/mvit/blob/19786631e330df9f3622e5402b4a419a263a2c80/mvit/models/attention.py).
Args:
attn (`torch.Tensor`):
Attention map.
queries (`torch.Tensor`):
Query q in the attention layer with shape (batch_size, queries_height * queries_width, num_channels).
rel_pos_h (`torch.Tensor`):
Relative position embeddings (Lh, num_channels) for height axis.
rel_pos_w (`torch.Tensor`):
Relative position embeddings (Lw, num_channels) for width axis.
q_size (`Tuple[int]`):
Spatial sequence size of query q with (queries_height, queries_width).
k_size (`Tuple[int]`]):
Spatial sequence size of key k with (keys_height, keys_width).
Returns:
attn (Tensor): attention map with added relative positional embeddings.
"""
queries_height, queries_width = q_size
keys_height, keys_width = k_size
relative_height = get_rel_pos(queries_height, keys_height, rel_pos_h)
relative_width = get_rel_pos(queries_width, keys_width, rel_pos_w)
batch_size, _, dim = queries.shape
r_q = queries.reshape(batch_size, queries_height, queries_width, dim)
relative_height = torch.einsum("bhwc,hkc->bhwk", r_q, relative_height)
relative_weight = torch.einsum("bhwc,wkc->bhwk", r_q, relative_width)
attn = (
attn.view(batch_size, queries_height, queries_width, keys_height, keys_width)
+ relative_height[:, :, :, :, None]
+ relative_weight[:, :, :, None, :]
).view(batch_size, queries_height * queries_width, keys_height * keys_width)
return attn
class VitDetAttention(nn.Module):
"""Multi-head Attention block with relative position embeddings."""
def __init__(self, config, input_size=None):
"""
Args:
config (`VitDetConfig`):
Model configuration.
input_size (`Tuple[int]`, *optional*):
Input resolution, only required in case relative position embeddings are added.
"""
super().__init__()
dim = config.hidden_size
num_heads = config.num_attention_heads
self.num_heads = num_heads
head_dim = dim // num_heads
self.scale = head_dim**-0.5
self.qkv = nn.Linear(dim, dim * 3, bias=config.qkv_bias)
self.proj = nn.Linear(dim, dim)
self.use_relative_position_embeddings = config.use_relative_position_embeddings
if self.use_relative_position_embeddings:
# initialize relative positional embeddings
self.rel_pos_h = nn.Parameter(torch.zeros(2 * input_size[0] - 1, head_dim))
self.rel_pos_w = nn.Parameter(torch.zeros(2 * input_size[1] - 1, head_dim))
def forward(self, hidden_state, output_attentions=False):
batch_size, height, width, _ = hidden_state.shape
# qkv with shape (3, batch_size, num_heads, height * width, num_channels)
qkv = self.qkv(hidden_state).reshape(batch_size, height * width, 3, self.num_heads, -1).permute(2, 0, 3, 1, 4)
# queries, keys and values have shape (batch_size * num_heads, height * width, num_channels)
queries, keys, values = qkv.reshape(3, batch_size * self.num_heads, height * width, -1).unbind(0)
attention_scores = (queries * self.scale) @ keys.transpose(-2, -1)
if self.use_relative_position_embeddings:
attention_scores = add_decomposed_relative_positions(
attention_scores, queries, self.rel_pos_h, self.rel_pos_w, (height, width), (height, width)
)
attention_probs = attention_scores.softmax(dim=-1)
hidden_state = attention_probs @ values
hidden_state = hidden_state.view(batch_size, self.num_heads, height, width, -1)
hidden_state = hidden_state.permute(0, 2, 3, 1, 4)
hidden_state = hidden_state.reshape(batch_size, height, width, -1)
hidden_state = self.proj(hidden_state)
if output_attentions:
attention_probs = attention_probs.reshape(
batch_size, self.num_heads, attention_probs.shape[-2], attention_probs.shape[-1]
)
outputs = (hidden_state, attention_probs)
else:
outputs = (hidden_state,)
return outputs
# Copied from transformers.models.beit.modeling_beit.drop_path
def drop_path(input: torch.Tensor, drop_prob: float = 0.0, training: bool = False) -> torch.Tensor:
"""
Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks).
Comment by Ross Wightman: This is the same as the DropConnect impl I created for EfficientNet, etc networks,
however, the original name is misleading as 'Drop Connect' is a different form of dropout in a separate paper...
See discussion: https://github.com/tensorflow/tpu/issues/494#issuecomment-532968956 ... I've opted for changing the
layer and argument names to 'drop path' rather than mix DropConnect as a layer name and use 'survival rate' as the
argument.
"""
if drop_prob == 0.0 or not training:
return input
keep_prob = 1 - drop_prob
shape = (input.shape[0],) + (1,) * (input.ndim - 1) # work with diff dim tensors, not just 2D ConvNets
random_tensor = keep_prob + torch.rand(shape, dtype=input.dtype, device=input.device)
random_tensor.floor_() # binarize
output = input.div(keep_prob) * random_tensor
return output
# Copied from transformers.models.beit.modeling_beit.BeitDropPath
class VitDetDropPath(nn.Module):
"""Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks)."""
def __init__(self, drop_prob: Optional[float] = None) -> None:
super().__init__()
self.drop_prob = drop_prob
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
return drop_path(hidden_states, self.drop_prob, self.training)
def extra_repr(self) -> str:
return "p={}".format(self.drop_prob)
class VitDetLayerNorm(nn.Module):
"""
A LayerNorm variant, popularized by Transformers, that performs point-wise mean and variance normalization over the
channel dimension for inputs that have shape (batch_size, channels, height, width).
https://github.com/facebookresearch/ConvNeXt/blob/d1fa8f6fef0a165b27399986cc2bdacc92777e40/models/convnext.py#L119
"""
def __init__(self, normalized_shape, eps=1e-6):
super().__init__()
self.weight = nn.Parameter(torch.ones(normalized_shape))
self.bias = nn.Parameter(torch.zeros(normalized_shape))
self.eps = eps
self.normalized_shape = (normalized_shape,)
def forward(self, x):
u = x.mean(1, keepdim=True)
s = (x - u).pow(2).mean(1, keepdim=True)
x = (x - u) / torch.sqrt(s + self.eps)
x = self.weight[:, None, None] * x + self.bias[:, None, None]
return x
class VitDetResBottleneckBlock(nn.Module):
"""
The standard bottleneck residual block without the last activation layer. It contains 3 conv layers with kernels
1x1, 3x3, 1x1.
"""
def __init__(self, config, in_channels, out_channels, bottleneck_channels):
"""
Args:
config (`VitDetConfig`):
Model configuration.
in_channels (`int`):
Number of input channels.
out_channels (`int`):
Number of output channels.
bottleneck_channels (`int`):
Number of output channels for the 3x3 "bottleneck" conv layers.
"""
super().__init__()
self.conv1 = nn.Conv2d(in_channels, bottleneck_channels, 1, bias=False)
self.norm1 = VitDetLayerNorm(bottleneck_channels)
self.act1 = ACT2FN[config.hidden_act]
self.conv2 = nn.Conv2d(bottleneck_channels, bottleneck_channels, 3, padding=1, bias=False)
self.norm2 = VitDetLayerNorm(bottleneck_channels)
self.act2 = ACT2FN[config.hidden_act]
self.conv3 = nn.Conv2d(bottleneck_channels, out_channels, 1, bias=False)
self.norm3 = VitDetLayerNorm(out_channels)
def forward(self, x):
out = x
for layer in self.children():
out = layer(out)
out = x + out
return out
class VitDetMlp(nn.Module):
def __init__(self, config, in_features: int, hidden_features: int) -> None:
super().__init__()
self.fc1 = nn.Linear(in_features, hidden_features)
self.act = ACT2FN[config.hidden_act]
self.fc2 = nn.Linear(hidden_features, in_features)
self.drop = nn.Dropout(config.dropout_prob)
def forward(self, x: torch.Tensor) -> torch.Tensor:
x = self.fc1(x)
x = self.act(x)
x = self.drop(x)
x = self.fc2(x)
x = self.drop(x)
return x
def window_partition(hidden_state, window_size):
"""
Partition into non-overlapping windows with padding if needed.
Args:
hidden_state (`torch.Tensor`):
Input tokens with [batch_size, height, width, num_channels].
window_size (`int`):
Window size.
Returns:
`tuple(torch.FloatTensor)` comprising various elements:
- windows: windows after partition with [batch_size * num_windows, window_size, window_size, num_channels].
- (patch_height, patch_width): padded height and width before partition
"""
batch_size, height, width, num_channels = hidden_state.shape
pad_height = (window_size - height % window_size) % window_size
pad_width = (window_size - width % window_size) % window_size
if pad_height > 0 or pad_width > 0:
hidden_state = nn.functional.pad(hidden_state, (0, 0, 0, pad_width, 0, pad_height))
patch_height, patch_width = height + pad_height, width + pad_width
hidden_state = hidden_state.view(
batch_size, patch_height // window_size, window_size, patch_width // window_size, window_size, num_channels
)
windows = hidden_state.permute(0, 1, 3, 2, 4, 5).contiguous().view(-1, window_size, window_size, num_channels)
return windows, (patch_height, patch_width)
def window_unpartition(windows, window_size, pad_height_width, height_width):
"""
Window unpartition into original sequences and removing padding.
Args:
windows (`torch.Tensor`):
Input tokens with [batch_size * num_windows, window_size, window_size, num_channels].
window_size (`int`):
Window size.
pad_height_width (`Tuple[int]`):
Padded height and width (patch_height, patch_width).
height_width (`Tuple[int]`):
Original height and width before padding.
Returns:
hidden_state: unpartitioned sequences with [batch_size, height, width, num_channels].
"""
patch_height, patch_width = pad_height_width
height, width = height_width
batch_size = windows.shape[0] // (patch_height * patch_width // window_size // window_size)
hidden_state = windows.view(
batch_size, patch_height // window_size, patch_width // window_size, window_size, window_size, -1
)
hidden_state = hidden_state.permute(0, 1, 3, 2, 4, 5).contiguous().view(batch_size, patch_height, patch_width, -1)
if patch_height > height or patch_width > width:
hidden_state = hidden_state[:, :height, :width, :].contiguous()
return hidden_state
class VitDetLayer(nn.Module):
"""This corresponds to the Block class in the original implementation."""
def __init__(
self, config: VitDetConfig, drop_path_rate: float = 0, window_size: int = 0, use_residual_block: bool = False
) -> None:
super().__init__()
dim = config.hidden_size
input_size = (config.image_size // config.patch_size, config.image_size // config.patch_size)
self.norm1 = nn.LayerNorm(dim, eps=config.layer_norm_eps)
self.attention = VitDetAttention(
config, input_size=input_size if window_size == 0 else (window_size, window_size)
)
self.drop_path = VitDetDropPath(drop_path_rate) if drop_path_rate > 0.0 else nn.Identity()
self.norm2 = nn.LayerNorm(dim, eps=config.layer_norm_eps)
self.mlp = VitDetMlp(config=config, in_features=dim, hidden_features=int(dim * config.mlp_ratio))
self.window_size = window_size
self.use_residual_block = use_residual_block
if self.use_residual_block:
# Use a residual block with bottleneck channel as dim // 2
self.residual = VitDetResBottleneckBlock(
config=config,
in_channels=dim,
out_channels=dim,
bottleneck_channels=dim // 2,
)
def forward(
self,
hidden_states: torch.Tensor,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Union[Tuple[torch.Tensor, torch.Tensor], Tuple[torch.Tensor]]:
hidden_states = hidden_states.permute(0, 2, 3, 1)
shortcut = hidden_states
hidden_states = self.norm1(hidden_states)
# Window partition
if self.window_size > 0:
height, width = hidden_states.shape[1], hidden_states.shape[2]
hidden_states, pad_height_width = window_partition(hidden_states, self.window_size)
self_attention_outputs = self.attention(
hidden_states,
output_attentions=output_attentions,
)
hidden_states = self_attention_outputs[0]
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
# Reverse window partition
if self.window_size > 0:
hidden_states = window_unpartition(hidden_states, self.window_size, pad_height_width, (height, width))
# first residual connection
hidden_states = shortcut + self.drop_path(hidden_states)
hidden_states = hidden_states + self.drop_path(self.mlp(self.norm2(hidden_states)))
hidden_states = hidden_states.permute(0, 3, 1, 2)
if self.use_residual_block:
hidden_states = self.residual(hidden_states)
outputs = (hidden_states,) + outputs
return outputs
class VitDetEncoder(nn.Module):
def __init__(self, config: VitDetConfig) -> None:
super().__init__()
self.config = config
depth = config.num_hidden_layers
# stochastic depth decay rule
drop_path_rate = [x.item() for x in torch.linspace(0, config.drop_path_rate, depth)]
layers = []
for i in range(depth):
layers.append(
VitDetLayer(
config,
drop_path_rate=drop_path_rate[i],
window_size=config.window_size if i in config.window_block_indices else 0,
use_residual_block=i in config.residual_block_indices,
)
)
self.layer = nn.ModuleList(layers)
self.gradient_checkpointing = False
def forward(
self,
hidden_states: torch.Tensor,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
) -> Union[tuple, BaseModelOutput]:
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer_module.__call__,
hidden_states,
layer_head_mask,
output_attentions,
)
else:
layer_outputs = layer_module(hidden_states, layer_head_mask, output_attentions)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_self_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
def caffe2_msra_fill(module: nn.Module) -> None:
"""
Initialize `module.weight` using the "MSRAFill" implemented in Caffe2. Also initializes `module.bias` to 0.
Source: https://detectron2.readthedocs.io/en/latest/_modules/fvcore/nn/weight_init.html.
Args:
module (torch.nn.Module): module to initialize.
"""
nn.init.kaiming_normal_(module.weight, mode="fan_out", nonlinearity="relu")
if module.bias is not None:
nn.init.constant_(module.bias, 0)
class VitDetPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = VitDetConfig
base_model_prefix = "vitdet"
main_input_name = "pixel_values"
supports_gradient_checkpointing = True
_no_split_modules = []
def _init_weights(self, module: Union[nn.Linear, nn.Conv2d, nn.LayerNorm]) -> None:
"""Initialize the weights"""
if isinstance(module, (nn.Linear, nn.Conv2d)):
# Upcast the input in `fp32` and cast it back to desired `dtype` to avoid
# `trunc_normal_cpu` not implemented in `half` issues
module.weight.data = nn.init.trunc_normal_(
module.weight.data.to(torch.float32), mean=0.0, std=self.config.initializer_range
).to(module.weight.dtype)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
elif isinstance(module, VitDetEmbeddings):
module.position_embeddings.data = nn.init.trunc_normal_(
module.position_embeddings.data.to(torch.float32),
mean=0.0,
std=self.config.initializer_range,
).to(module.position_embeddings.dtype)
elif isinstance(module, VitDetAttention) and self.config.use_relative_position_embeddings:
module.rel_pos_h.data = nn.init.trunc_normal_(
module.rel_pos_h.data.to(torch.float32),
mean=0.0,
std=self.config.initializer_range,
)
module.rel_pos_w.data = nn.init.trunc_normal_(
module.rel_pos_w.data.to(torch.float32),
mean=0.0,
std=self.config.initializer_range,
)
elif isinstance(module, VitDetResBottleneckBlock):
for layer in [module.conv1, module.conv2, module.conv3]:
caffe2_msra_fill(layer)
for layer in [module.norm1, module.norm2]:
layer.weight.data.fill_(1.0)
layer.bias.data.zero_()
# zero init last norm layer.
module.norm3.weight.data.zero_()
module.norm3.bias.data.zero_()
VITDET_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass. Use it
as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`VitDetConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
VITDET_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`AutoImageProcessor`]. See [`ViTImageProcessor.__call__`]
for details.
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare VitDet Transformer model outputting raw hidden-states without any specific head on top.",
VITDET_START_DOCSTRING,
)
class VitDetModel(VitDetPreTrainedModel):
def __init__(self, config: VitDetConfig):
super().__init__(config)
self.config = config
self.embeddings = VitDetEmbeddings(config)
self.encoder = VitDetEncoder(config)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self) -> VitDetEmbeddings:
return self.embeddings.projection
def _prune_heads(self, heads_to_prune: Dict[int, List[int]]) -> None:
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(VITDET_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=BaseModelOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
pixel_values: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutput]:
"""
Returns:
Examples:
```python
>>> from transformers import VitDetConfig, VitDetModel
>>> import torch
>>> config = VitDetConfig()
>>> model = VitDetModel(config)
>>> pixel_values = torch.randn(1, 3, 224, 224)
>>> with torch.no_grad():
... outputs = model(pixel_values)
>>> last_hidden_states = outputs.last_hidden_state
>>> list(last_hidden_states.shape)
[1, 768, 14, 14]
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if pixel_values is None:
raise ValueError("You have to specify pixel_values")
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(pixel_values)
encoder_outputs = self.encoder(
embedding_output,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
if not return_dict:
return (sequence_output,) + encoder_outputs[1:]
return BaseModelOutput(
last_hidden_state=sequence_output,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
@add_start_docstrings(
"""
ViTDet backbone, to be used with frameworks like Mask R-CNN.
""",
VITDET_START_DOCSTRING,
)
class VitDetBackbone(VitDetPreTrainedModel, BackboneMixin):
def __init__(self, config):
super().__init__(config)
super()._init_backbone(config)
self.embeddings = VitDetEmbeddings(config)
self.encoder = VitDetEncoder(config)
self.num_features = [config.hidden_size for _ in range(config.num_hidden_layers + 1)]
# initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self) -> VitDetEmbeddings:
return self.embeddings.projection
@add_start_docstrings_to_model_forward(VITDET_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=BackboneOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
pixel_values: torch.Tensor,
output_hidden_states: Optional[bool] = None,
output_attentions: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> BackboneOutput:
"""
Returns:
Examples:
```python
>>> from transformers import VitDetConfig, VitDetBackbone
>>> import torch
>>> config = VitDetConfig()
>>> model = VitDetBackbone(config)
>>> pixel_values = torch.randn(1, 3, 224, 224)
>>> with torch.no_grad():
... outputs = model(pixel_values)
>>> feature_maps = outputs.feature_maps
>>> list(feature_maps[-1].shape)
[1, 768, 14, 14]
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
embedding_output = self.embeddings(pixel_values)
outputs = self.encoder(
embedding_output,
output_hidden_states=True,
output_attentions=output_attentions,
return_dict=return_dict,
)
hidden_states = outputs.hidden_states if return_dict else outputs[1]
feature_maps = ()
for stage, hidden_state in zip(self.stage_names, hidden_states):
if stage in self.out_features:
feature_maps += (hidden_state,)
if not return_dict:
if output_hidden_states:
output = (feature_maps,) + outputs[1:]
else:
output = (feature_maps,) + outputs[2:]
return output
return BackboneOutput(
feature_maps=feature_maps,
hidden_states=outputs.hidden_states if output_hidden_states else None,
attentions=outputs.attentions,
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/vitdet/configuration_vitdet.py | # coding=utf-8
# Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" VitDet model configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
from ...utils.backbone_utils import BackboneConfigMixin, get_aligned_output_features_output_indices
logger = logging.get_logger(__name__)
VITDET_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"facebook/vit-det-base": "https://huggingface.co/facebook/vit-det-base/resolve/main/config.json",
}
class VitDetConfig(BackboneConfigMixin, PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`VitDetModel`]. It is used to instantiate an
VitDet model according to the specified arguments, defining the model architecture. Instantiating a configuration
with the defaults will yield a similar configuration to that of the VitDet
[google/vitdet-base-patch16-224](https://huggingface.co/google/vitdet-base-patch16-224) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
mlp_ratio (`int`, *optional*, defaults to 4):
Ratio of mlp hidden dim to embedding dim.
hidden_act (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"selu"` and `"gelu_new"` are supported.
dropout_prob (`float`, *optional*, defaults to 0.0):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-06):
The epsilon used by the layer normalization layers.
image_size (`int`, *optional*, defaults to 224):
The size (resolution) of each image.
pretrain_image_size (`int`, *optional*, defaults to 224):
The size (resolution) of each image during pretraining.
patch_size (`int`, *optional*, defaults to 16):
The size (resolution) of each patch.
num_channels (`int`, *optional*, defaults to 3):
The number of input channels.
qkv_bias (`bool`, *optional*, defaults to `True`):
Whether to add a bias to the queries, keys and values.
drop_path_rate (`float`, *optional*, defaults to 0.0):
Stochastic depth rate.
window_block_indices (`List[int]`, *optional*, defaults to `[]`):
List of indices of blocks that should have window attention instead of regular global self-attention.
residual_block_indices (`List[int]`, *optional*, defaults to `[]`):
List of indices of blocks that should have an extra residual block after the MLP.
use_absolute_position_embeddings (`bool`, *optional*, defaults to `True`):
Whether to add absolute position embeddings to the patch embeddings.
use_relative_position_embeddings (`bool`, *optional*, defaults to `False`):
Whether to add relative position embeddings to the attention maps.
window_size (`int`, *optional*, defaults to 0):
The size of the attention window.
out_features (`List[str]`, *optional*):
If used as backbone, list of features to output. Can be any of `"stem"`, `"stage1"`, `"stage2"`, etc.
(depending on how many stages the model has). If unset and `out_indices` is set, will default to the
corresponding stages. If unset and `out_indices` is unset, will default to the last stage. Must be in the
same order as defined in the `stage_names` attribute.
out_indices (`List[int]`, *optional*):
If used as backbone, list of indices of features to output. Can be any of 0, 1, 2, etc. (depending on how
many stages the model has). If unset and `out_features` is set, will default to the corresponding stages.
If unset and `out_features` is unset, will default to the last stage. Must be in the
same order as defined in the `stage_names` attribute.
Example:
```python
>>> from transformers import VitDetConfig, VitDetModel
>>> # Initializing a VitDet configuration
>>> configuration = VitDetConfig()
>>> # Initializing a model (with random weights) from the configuration
>>> model = VitDetModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "vitdet"
def __init__(
self,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
mlp_ratio=4,
hidden_act="gelu",
dropout_prob=0.0,
initializer_range=0.02,
layer_norm_eps=1e-6,
image_size=224,
pretrain_image_size=224,
patch_size=16,
num_channels=3,
qkv_bias=True,
drop_path_rate=0.0,
window_block_indices=[],
residual_block_indices=[],
use_absolute_position_embeddings=True,
use_relative_position_embeddings=False,
window_size=0,
out_features=None,
out_indices=None,
**kwargs,
):
super().__init__(**kwargs)
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.mlp_ratio = mlp_ratio
self.hidden_act = hidden_act
self.dropout_prob = dropout_prob
self.initializer_range = initializer_range
self.layer_norm_eps = layer_norm_eps
self.image_size = image_size
self.pretrain_image_size = pretrain_image_size
self.patch_size = patch_size
self.num_channels = num_channels
self.qkv_bias = qkv_bias
self.drop_path_rate = drop_path_rate
self.window_block_indices = window_block_indices
self.residual_block_indices = residual_block_indices
self.use_absolute_position_embeddings = use_absolute_position_embeddings
self.use_relative_position_embeddings = use_relative_position_embeddings
self.window_size = window_size
self.stage_names = ["stem"] + [f"stage{idx}" for idx in range(1, self.num_hidden_layers + 1)]
self._out_features, self._out_indices = get_aligned_output_features_output_indices(
out_features=out_features, out_indices=out_indices, stage_names=self.stage_names
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/bloom/convert_bloom_original_checkpoint_to_pytorch.py | # coding=utf-8
# Copyright 2022 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert BigScience BLOOM checkpoint."""
import argparse
import json
import os
import re
import torch
from transformers import BloomConfig, BloomModel
from transformers.file_utils import CONFIG_NAME, WEIGHTS_NAME
from transformers.utils import logging
logging.set_verbosity_info()
WEIGHTS_TO_AVERAGE_ENDSWITH = [
"word_embeddings_layernorm.weight",
"word_embeddings_layernorm.bias",
"input_layernorm.weight",
"input_layernorm.bias",
"post_attention_layernorm.weight",
"post_attention_layernorm.bias",
"self_attention.dense.bias",
"mlp.dense_4h_to_h.bias",
"ln_f.weight",
"ln_f.bias",
]
WEIGHTS_WITH_ROW_PARALLELISM_CONTAIN = [
"mlp.dense_4h_to_h.weight",
"self_attention.dense.weight",
]
def layer_name_mapping(key, file):
"""Convert Megatron-DeepSpeed TP/PP weights mapping in transformers PP only"""
# Handle first and last layers
layer_rename_map = {
"word_embeddings.weight": "word_embeddings.weight",
"word_embeddings.norm.weight": "word_embeddings_layernorm.weight",
"word_embeddings.norm.bias": "word_embeddings_layernorm.bias",
"weight": "ln_f.weight",
"bias": "ln_f.bias",
}
if key in layer_rename_map:
return layer_rename_map[key]
# Handle transformer blocks
layer_number = int(re.match(r".*layer_(\d*).*", file)[1])
layer_number -= 3
return f"h.{layer_number}." + key
def get_dtype_size(dtype):
if dtype == torch.bool:
return 1 / 8
bit_search = re.search(r"[^\d](\d+)$", str(dtype))
if bit_search is None:
raise ValueError(f"`dtype` is not a valid dtype: {dtype}.")
bit_size = int(bit_search.groups()[0])
return bit_size // 8
def convert_bloom_checkpoint_to_pytorch(
bloom_checkpoint_path, bloom_config_file, pytorch_dump_folder_path, shard_model, pretraining_tp
):
# Construct model
if bloom_config_file == "":
config = BloomConfig()
else:
config = BloomConfig.from_json_file(bloom_config_file)
if shard_model:
file_names = os.listdir(bloom_checkpoint_path)
file_names = sorted(filter(lambda s: s.startswith("layer") and "model_00" in s, file_names))
index_dict = {"weight_map": {}, "metadata": {}}
total_size = 0
missing_keys = None
config = BloomConfig()
for j, file in enumerate(file_names):
print("Processing file: {}".format(file))
tensors = None
for i in range(pretraining_tp):
# load all TP files
f_name = file.replace("model_00", f"model_0{i}")
temp = torch.load(os.path.join(bloom_checkpoint_path, f_name), map_location="cpu")
# Rename keys in the transformers names
keys = list(temp.keys())
for key in keys:
temp[layer_name_mapping(key, file)] = temp.pop(key)
if tensors is None:
tensors = temp
else:
for key in tensors.keys():
if any(key.endswith(end) for end in WEIGHTS_TO_AVERAGE_ENDSWITH):
# We average (sum and then divide) some weights accross TP ranks (see https://github.com/bigscience-workshop/Megatron-DeepSpeed/blob/olruwase/sync_layer_norms/megatron/training.py#L425)
tensors[key] += temp[key]
else:
# Some weights are RowParallelLinear in Megatron-Deepspeed, others are ColumnParallel
cat_dim = 1 if any(text in key for text in WEIGHTS_WITH_ROW_PARALLELISM_CONTAIN) else 0
# We concatenate these weights accross TP ranks
tensors[key] = torch.cat([tensors[key], temp[key]], dim=cat_dim)
# Divide by the number of TP the weights we want to average
for key in tensors.keys():
if any(key.endswith(end) for end in WEIGHTS_TO_AVERAGE_ENDSWITH):
tensors[key] = tensors[key] / pretraining_tp
torch.save(
tensors,
os.path.join(
pytorch_dump_folder_path,
"pytorch_model_{}-of-{}.bin".format(str(j + 1).zfill(5), str(len(file_names)).zfill(5)),
),
)
for key in tensors.keys():
value = tensors[key]
total_size += value.numel() * get_dtype_size(value.dtype)
if key not in index_dict["weight_map"]:
index_dict["weight_map"][key] = "pytorch_model_{}-of-{}.bin".format(
str(j + 1).zfill(5), str(len(file_names)).zfill(5)
)
config = BloomConfig()
pytorch_config_dump_path = pytorch_dump_folder_path + "/" + CONFIG_NAME
index_dict["metadata"]["total_size"] = total_size
with open(pytorch_config_dump_path, "w", encoding="utf-8") as f:
f.write(config.to_json_string())
with open(os.path.join(pytorch_dump_folder_path, WEIGHTS_NAME + ".index.json"), "w", encoding="utf-8") as f:
json_config = json.dumps(index_dict, indent=2, sort_keys=True) + "\n"
f.write(json_config)
else:
model = BloomModel(config)
file_names = os.listdir(bloom_checkpoint_path)
file_names = sorted(filter(lambda s: s.startswith("layer") and "model_00" in s, file_names))
missing_keys = None
for i, file in enumerate(file_names):
tensors = None
for i in range(pretraining_tp):
# load all TP files
f_name = file.replace("model_00", f"model_0{i}")
temp = torch.load(os.path.join(bloom_checkpoint_path, f_name), map_location="cpu")
# Rename keys in the transformers names
keys = list(temp.keys())
for key in keys:
temp[layer_name_mapping(key, file)] = temp.pop(key)
if tensors is None:
tensors = temp
else:
for key in tensors.keys():
# We average (sum and then divide) some weights accross TP ranks (see https://github.com/bigscience-workshop/Megatron-DeepSpeed/blob/olruwase/sync_layer_norms/megatron/training.py#L425)
if any(key.endswith(end) for end in WEIGHTS_TO_AVERAGE_ENDSWITH):
tensors[key] += temp[key]
else:
# Some weights are RowParallelLinear in Megatron-Deepspeed, others are ColumnParallel
cat_dim = 1 if any(text in key for text in WEIGHTS_WITH_ROW_PARALLELISM_CONTAIN) else 0
# We concatenate these weights accross TP ranks
tensors[key] = torch.cat([tensors[key], temp[key]], dim=cat_dim)
# Divide by the number of TP the weights we want to average
for key in tensors.keys():
if any(key.endswith(end) for end in WEIGHTS_TO_AVERAGE_ENDSWITH):
tensors[key] = tensors[key] / pretraining_tp
other_keys = model.load_state_dict(tensors, strict=False)
assert not other_keys.unexpected_keys, f"The keys {other_keys.unexpected_keys} are unexpected"
if missing_keys is None:
missing_keys = set(other_keys.missing_keys)
else:
missing_keys = missing_keys.intersection(set(other_keys.missing_keys))
assert not missing_keys, f"The keys {missing_keys} are missing"
# Save pytorch-model
os.makedirs(pytorch_dump_folder_path, exist_ok=True)
pytorch_weights_dump_path = pytorch_dump_folder_path + "/" + WEIGHTS_NAME
pytorch_config_dump_path = pytorch_dump_folder_path + "/" + CONFIG_NAME
print(f"Save PyTorch model to {pytorch_weights_dump_path} with dtype {config.torch_dtype}")
if config.torch_dtype is not None:
model = model.to(config.torch_dtype)
torch.save(model.state_dict(), pytorch_weights_dump_path)
print(f"Save configuration file to {pytorch_config_dump_path}")
with open(pytorch_config_dump_path, "w", encoding="utf-8") as f:
f.write(config.to_json_string())
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--bloom_checkpoint_path",
default=None,
type=str,
required=True,
help="Path to the Megatron-LM checkpoint path.",
)
parser.add_argument(
"--pytorch_dump_folder_path", default=None, type=str, required=True, help="Path to the output PyTorch model."
)
parser.add_argument(
"--bloom_config_file",
default="",
type=str,
help=(
"An optional config json file corresponding to the pre-trained model. \n"
"This specifies the model architecture."
),
)
parser.add_argument(
"--shard_model",
action="store_true",
help="An optional setting to shard the output model \nThis enables sharding the converted checkpoint",
)
parser.add_argument(
"--pretraining_tp",
default=4,
type=int,
help="Pretraining TP rank that has been used when training the model in Megatron-LM \n",
)
args = parser.parse_args()
convert_bloom_checkpoint_to_pytorch(
args.bloom_checkpoint_path,
args.bloom_config_file,
args.pytorch_dump_folder_path,
args.shard_model,
args.pretraining_tp,
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/bloom/modeling_bloom.py | # coding=utf-8
# Copyright 2022 HuggingFace Inc. team and BigScience workshop.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch BLOOM model."""
import math
import warnings
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, LayerNorm, MSELoss
from torch.nn import functional as F
from ...file_utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward
from ...modeling_attn_mask_utils import _prepare_4d_causal_attention_mask
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
CausalLMOutputWithCrossAttentions,
QuestionAnsweringModelOutput,
SequenceClassifierOutputWithPast,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...utils import logging
from .configuration_bloom import BloomConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "bigscience/bloom-560m"
_CONFIG_FOR_DOC = "BloomConfig"
BLOOM_PRETRAINED_MODEL_ARCHIVE_LIST = [
"bigscience/bigscience-small-testing",
"bigscience/bloom-560m",
"bigscience/bloom-1b1",
"bigscience/bloom-1b7",
"bigscience/bloom-3b",
"bigscience/bloom-7b1",
"bigscience/bloom",
]
def build_alibi_tensor(attention_mask: torch.Tensor, num_heads: int, dtype: torch.dtype) -> torch.Tensor:
"""
Link to paper: https://arxiv.org/abs/2108.12409 Alibi tensor is not causal as the original paper mentions, it
relies on a translation invariance of softmax for quick implementation: with l being a tensor, and a fixed value
`softmax(l+a) = softmax(l)`. Based on
https://github.com/ofirpress/attention_with_linear_biases/blob/a35aaca144e0eb6b789dfcb46784c4b8e31b7983/fairseq/models/transformer.py#L742
TODO @thomasw21 this doesn't work as nicely due to the masking strategy, and so masking varies slightly.
Args:
Returns tensor shaped (batch_size * num_heads, 1, max_seq_len)
attention_mask (`torch.Tensor`):
Token-wise attention mask, this should be of shape (batch_size, max_seq_len).
num_heads (`int`, *required*):
number of heads
dtype (`torch.dtype`, *optional*, default=`torch.bfloat16`):
dtype of the output tensor
"""
batch_size, seq_length = attention_mask.shape
closest_power_of_2 = 2 ** math.floor(math.log2(num_heads))
base = torch.tensor(
2 ** (-(2 ** -(math.log2(closest_power_of_2) - 3))), device=attention_mask.device, dtype=torch.float32
)
powers = torch.arange(1, 1 + closest_power_of_2, device=attention_mask.device, dtype=torch.int32)
slopes = torch.pow(base, powers)
if closest_power_of_2 != num_heads:
extra_base = torch.tensor(
2 ** (-(2 ** -(math.log2(2 * closest_power_of_2) - 3))), device=attention_mask.device, dtype=torch.float32
)
num_remaining_heads = min(closest_power_of_2, num_heads - closest_power_of_2)
extra_powers = torch.arange(1, 1 + 2 * num_remaining_heads, 2, device=attention_mask.device, dtype=torch.int32)
slopes = torch.cat([slopes, torch.pow(extra_base, extra_powers)], dim=0)
# Note: alibi will added to the attention bias that will be applied to the query, key product of attention
# => therefore alibi will have to be of shape (batch_size, num_heads, query_length, key_length)
# => here we set (batch_size=1, num_heads=num_heads, query_length=1, key_length=max_length)
# => the query_length dimension will then be broadcasted correctly
# This is more or less identical to T5's relative position bias:
# https://github.com/huggingface/transformers/blob/f681437203baa7671de3174b0fa583c349d9d5e1/src/transformers/models/t5/modeling_t5.py#L527
arange_tensor = ((attention_mask.cumsum(dim=-1) - 1) * attention_mask)[:, None, :]
alibi = slopes[..., None] * arange_tensor
return alibi.reshape(batch_size * num_heads, 1, seq_length).to(dtype)
def dropout_add(x: torch.Tensor, residual: torch.Tensor, prob: float, training: bool) -> torch.Tensor:
"""
Dropout add function
Args:
x (`torch.tensor`, *required*):
input tensor
residual (`torch.tensor`, *required*):
residual tensor
prob (`float`, *required*):
dropout probability
training (`bool`, *required*):
training mode
"""
out = F.dropout(x, p=prob, training=training)
out = residual + out
return out
def bloom_gelu_forward(x: torch.Tensor) -> torch.Tensor:
"""
Custom bias GELU function. Adapted from Megatron-DeepSpeed code. Here we use a simple implementation (inference) to
make the model jitable.
Args:
x (`torch.tensor`, *required*):
input hidden states
"""
return x * 0.5 * (1.0 + torch.tanh(0.79788456 * x * (1 + 0.044715 * x * x)))
def bloom_gelu_back(g: torch.Tensor, x: torch.Tensor) -> torch.Tensor:
"""
gradient of tanh approximation of gelu gradient of actual gelu is: 0.5 * (1. + torch.erf(x * 0.70710678)) +
0.3989423 * x * torch.exp(-0.5 * x * x)
Args:
g (`torch.tensor`, *required*):
gradient output tensor
x (`torch.tensor`, *required*):
input tensor
"""
x = x[0] # x is a tuple of 1 element, needs to unpack it first
tanh_out = torch.tanh(0.79788456 * x * (1 + 0.044715 * x * x))
# sqrt(2/pi) * 3 * 0.044715 -> 0.1070322243
ff = 0.5 * x * ((1 - tanh_out * tanh_out) * (0.79788456 + 0.1070322243 * x * x)) + 0.5 * (1 + tanh_out)
return ff * g
class GeLUFunction(torch.autograd.Function):
@staticmethod
def forward(ctx, input: torch.Tensor) -> torch.Tensor:
ctx.save_for_backward(input)
return bloom_gelu_forward(input)
@staticmethod
def backward(ctx, grad_output: torch.Tensor) -> torch.Tensor:
input = ctx.saved_tensors
tmp = bloom_gelu_back(grad_output, input)
return tmp
class BloomGelu(nn.Module):
"""
BloomBiasGelu wrapper function that make use of the simple function on inference mode to make the model
torchscriptable and use the autograd function in training mode to get the accurate results of the gradients Partly
copied from Megatron-DeepSpeed code and adapted for our needs
See here why autograd functions are not torchscriptable: https://github.com/pytorch/pytorch/issues/22329
"""
def __init__(self):
super().__init__()
def forward(self, x: torch.Tensor) -> torch.Tensor:
if self.training:
return GeLUFunction.apply(x)
else:
return bloom_gelu_forward(x)
class BloomAttention(nn.Module):
def __init__(self, config: BloomConfig):
super().__init__()
self.pretraining_tp = config.pretraining_tp
self.slow_but_exact = config.slow_but_exact
self.hidden_size = config.hidden_size
self.num_heads = config.n_head
self.head_dim = self.hidden_size // self.num_heads
self.split_size = self.hidden_size
self.hidden_dropout = config.hidden_dropout
if self.head_dim * self.num_heads != self.hidden_size:
raise ValueError(
f"`hidden_size` must be divisible by num_heads (got `hidden_size`: {self.hidden_size} and `num_heads`:"
f" {self.num_heads})."
)
# Layer-wise attention scaling
self.inv_norm_factor = 1.0 / math.sqrt(self.head_dim)
self.beta = 1.0
self.query_key_value = nn.Linear(self.hidden_size, 3 * self.hidden_size, bias=True)
self.dense = nn.Linear(self.hidden_size, self.hidden_size)
self.attention_dropout = nn.Dropout(config.attention_dropout)
def _split_heads(self, fused_qkv: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor, torch.Tensor]:
"""
Split the last dimension into (num_heads, head_dim) without making any copies, results share same memory
storage as `fused_qkv`
Args:
fused_qkv (`torch.tensor`, *required*): [batch_size, seq_length, num_heads * 3 * head_dim]
Returns:
query: [batch_size, seq_length, num_heads, head_dim] key: [batch_size, seq_length, num_heads, head_dim]
value: [batch_size, seq_length, num_heads, head_dim]
"""
batch_size, seq_length, three_times_hidden_size = fused_qkv.shape
fused_qkv = fused_qkv.view(batch_size, seq_length, self.num_heads, 3, self.head_dim)
return fused_qkv[..., 0, :], fused_qkv[..., 1, :], fused_qkv[..., 2, :]
def _merge_heads(self, x: torch.Tensor) -> torch.Tensor:
"""
Merge heads together over the last dimension
Args:
x (`torch.tensor`, *required*): [batch_size * num_heads, seq_length, head_dim]
Returns:
torch.tensor: [batch_size, seq_length, num_heads * head_dim]
"""
# What we want to achieve is:
# batch_size * num_heads, seq_length, head_dim -> batch_size, seq_length, num_heads * head_dim
batch_size_and_num_heads, seq_length, _ = x.shape
batch_size = batch_size_and_num_heads // self.num_heads
# First view to decompose the batch size
# batch_size * num_heads, seq_length, head_dim -> batch_size, num_heads, seq_length, head_dim
x = x.view(batch_size, self.num_heads, seq_length, self.head_dim)
# batch_size, num_heads, seq_length, head_dim -> batch_size, seq_length, num_heads, head_dim
x = x.permute(0, 2, 1, 3)
# batch_size, seq_length, num_heads, head_dim -> batch_size, seq_length, num_heads * head_dim
return x.reshape(batch_size, seq_length, self.num_heads * self.head_dim)
def forward(
self,
hidden_states: torch.Tensor,
residual: torch.Tensor,
alibi: torch.Tensor,
attention_mask: torch.Tensor,
layer_past: Optional[Tuple[torch.Tensor, torch.Tensor]] = None,
head_mask: Optional[torch.Tensor] = None,
use_cache: bool = False,
output_attentions: bool = False,
):
fused_qkv = self.query_key_value(hidden_states) # [batch_size, seq_length, 3 x hidden_size]
# 3 x [batch_size, seq_length, num_heads, head_dim]
(query_layer, key_layer, value_layer) = self._split_heads(fused_qkv)
batch_size, q_length, _, _ = query_layer.shape
query_layer = query_layer.transpose(1, 2).reshape(batch_size * self.num_heads, q_length, self.head_dim)
key_layer = key_layer.permute(0, 2, 3, 1).reshape(batch_size * self.num_heads, self.head_dim, q_length)
value_layer = value_layer.transpose(1, 2).reshape(batch_size * self.num_heads, q_length, self.head_dim)
if layer_past is not None:
past_key, past_value = layer_past
# concatenate along seq_length dimension:
# - key: [batch_size * self.num_heads, head_dim, kv_length]
# - value: [batch_size * self.num_heads, kv_length, head_dim]
key_layer = torch.cat((past_key, key_layer), dim=2)
value_layer = torch.cat((past_value, value_layer), dim=1)
_, _, kv_length = key_layer.shape
if use_cache is True:
present = (key_layer, value_layer)
else:
present = None
# [batch_size * num_heads, q_length, kv_length]
# we use `torch.Tensor.baddbmm` instead of `torch.baddbmm` as the latter isn't supported by TorchScript v1.11
matmul_result = alibi.baddbmm(
batch1=query_layer,
batch2=key_layer,
beta=self.beta,
alpha=self.inv_norm_factor,
)
# change view to [batch_size, num_heads, q_length, kv_length]
attention_scores = matmul_result.view(batch_size, self.num_heads, q_length, kv_length)
# cast attention scores to fp32, compute scaled softmax and cast back to initial dtype - [batch_size, num_heads, q_length, kv_length]
input_dtype = attention_scores.dtype
# `float16` has a minimum value of -65504.0, whereas `bfloat16` and `float32` have a minimum value of `-3.4e+38`
if input_dtype == torch.float16:
attention_scores = attention_scores.to(torch.float)
attn_weights = torch.masked_fill(attention_scores, attention_mask, torch.finfo(attention_scores.dtype).min)
attention_probs = F.softmax(attn_weights, dim=-1, dtype=torch.float32).to(input_dtype)
# [batch_size, num_heads, q_length, kv_length]
attention_probs = self.attention_dropout(attention_probs)
if head_mask is not None:
attention_probs = attention_probs * head_mask
# change view [batch_size x num_heads, q_length, kv_length]
attention_probs_reshaped = attention_probs.view(batch_size * self.num_heads, q_length, kv_length)
# matmul: [batch_size * num_heads, q_length, head_dim]
context_layer = torch.bmm(attention_probs_reshaped, value_layer)
# change view [batch_size, q_length, num_heads * head_dim]
context_layer = self._merge_heads(context_layer)
# aggregate results across tp ranks. See here: https://github.com/pytorch/pytorch/issues/76232
if self.pretraining_tp > 1 and self.slow_but_exact:
slices = self.hidden_size / self.pretraining_tp
output_tensor = torch.zeros_like(context_layer)
for i in range(self.pretraining_tp):
output_tensor = output_tensor + F.linear(
context_layer[:, :, int(i * slices) : int((i + 1) * slices)],
self.dense.weight[:, int(i * slices) : int((i + 1) * slices)],
)
else:
output_tensor = self.dense(context_layer)
output_tensor = dropout_add(output_tensor, residual, self.hidden_dropout, self.training)
outputs = (output_tensor, present)
if output_attentions:
outputs += (attention_probs,)
return outputs
class BloomMLP(nn.Module):
def __init__(self, config: BloomConfig):
super().__init__()
hidden_size = config.hidden_size
self.pretraining_tp = config.pretraining_tp
self.slow_but_exact = config.slow_but_exact
self.dense_h_to_4h = nn.Linear(hidden_size, 4 * hidden_size)
self.gelu_impl = BloomGelu()
self.dense_4h_to_h = nn.Linear(4 * hidden_size, hidden_size)
self.hidden_dropout = config.hidden_dropout
def forward(self, hidden_states: torch.Tensor, residual: torch.Tensor) -> torch.Tensor:
hidden_states = self.gelu_impl(self.dense_h_to_4h(hidden_states))
if self.pretraining_tp > 1 and self.slow_but_exact:
intermediate_output = torch.zeros_like(residual)
slices = self.dense_4h_to_h.weight.shape[-1] / self.pretraining_tp
for i in range(self.pretraining_tp):
intermediate_output = intermediate_output + F.linear(
hidden_states[:, :, int(i * slices) : int((i + 1) * slices)],
self.dense_4h_to_h.weight[:, int(i * slices) : int((i + 1) * slices)],
)
else:
intermediate_output = self.dense_4h_to_h(hidden_states)
output = dropout_add(intermediate_output, residual, self.hidden_dropout, self.training)
return output
class BloomBlock(nn.Module):
def __init__(self, config: BloomConfig):
super().__init__()
hidden_size = config.hidden_size
self.input_layernorm = LayerNorm(hidden_size, eps=config.layer_norm_epsilon)
self.num_heads = config.n_head
self.self_attention = BloomAttention(config)
self.post_attention_layernorm = LayerNorm(hidden_size, eps=config.layer_norm_epsilon)
self.mlp = BloomMLP(config)
self.apply_residual_connection_post_layernorm = config.apply_residual_connection_post_layernorm
self.hidden_dropout = config.hidden_dropout
def forward(
self,
hidden_states: torch.Tensor,
alibi: torch.Tensor,
attention_mask: torch.Tensor,
layer_past: Optional[Tuple[torch.Tensor, torch.Tensor]] = None,
head_mask: Optional[torch.Tensor] = None,
use_cache: bool = False,
output_attentions: bool = False,
):
# hidden_states: [batch_size, seq_length, hidden_size]
# Layer norm at the beginning of the transformer layer.
layernorm_output = self.input_layernorm(hidden_states)
# Layer norm post the self attention.
if self.apply_residual_connection_post_layernorm:
residual = layernorm_output
else:
residual = hidden_states
# Self attention.
attn_outputs = self.self_attention(
layernorm_output,
residual,
layer_past=layer_past,
attention_mask=attention_mask,
alibi=alibi,
head_mask=head_mask,
use_cache=use_cache,
output_attentions=output_attentions,
)
attention_output = attn_outputs[0]
outputs = attn_outputs[1:]
layernorm_output = self.post_attention_layernorm(attention_output)
# Get residual
if self.apply_residual_connection_post_layernorm:
residual = layernorm_output
else:
residual = attention_output
# MLP.
output = self.mlp(layernorm_output, residual)
if use_cache:
outputs = (output,) + outputs
else:
outputs = (output,) + outputs[1:]
return outputs # hidden_states, present, attentions
class BloomPreTrainedModel(PreTrainedModel):
config_class = BloomConfig
base_model_prefix = "transformer"
supports_gradient_checkpointing = True
_no_split_modules = ["BloomBlock"]
_skip_keys_device_placement = "past_key_values"
def __init__(self, *inputs, **kwargs):
super().__init__(*inputs, **kwargs)
def _init_weights(self, module: nn.Module):
"""Initialize the weights."""
if isinstance(module, nn.Linear):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
@staticmethod
def _convert_to_standard_cache(
past_key_value: Tuple[Tuple[torch.Tensor, torch.Tensor]], batch_size: int
) -> Tuple[Tuple[torch.Tensor, torch.Tensor]]:
"""
Standardizes the format of the cache so as to match most implementations, i.e. to tuple(tuple([batch_size,
num_heads, ...]))
"""
batch_size_times_num_heads, head_dim, seq_length = past_key_value[0][0].shape
num_heads = batch_size_times_num_heads // batch_size
# key: [batch_size * num_heads, head_dim, seq_length] -> [batch_size, num_heads, head_dim, seq_length]
# value: [batch_size * num_heads, seq_length, head_dim] -> [batch_size, num_heads, seq_length, head_dim]
return tuple(
(
layer_past[0].view(batch_size, num_heads, head_dim, seq_length),
layer_past[1].view(batch_size, num_heads, seq_length, head_dim),
)
for layer_past in past_key_value
)
@staticmethod
def _convert_to_bloom_cache(
past_key_value: Tuple[Tuple[torch.Tensor, torch.Tensor]],
) -> Tuple[Tuple[torch.Tensor, torch.Tensor]]:
"""
Converts the cache to the format expected by Bloom, i.e. to tuple(tuple([batch_size * num_heads, ...]))
"""
batch_size, num_heads, head_dim, seq_length = past_key_value[0][0].shape
batch_size_times_num_heads = batch_size * num_heads
# key: [batch_size, num_heads, head_dim, seq_length] -> [batch_size * num_heads, head_dim, seq_length]
# value: [batch_size, num_heads, seq_length, head_dim] -> [batch_size * num_heads, seq_length, head_dim]
return tuple(
(
layer_past[0].view(batch_size_times_num_heads, head_dim, seq_length),
layer_past[1].view(batch_size_times_num_heads, seq_length, head_dim),
)
for layer_past in past_key_value
)
BLOOM_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`BloomConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
BLOOM_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, input_ids_length)`):
`input_ids_length` = `sequence_length` if `past_key_values` is `None` else `past_key_values[0][0].shape[2]`
(`sequence_length` of input past key value states). Indices of input sequence tokens in the vocabulary.
If `past_key_values` is used, only `input_ids` that do not have their past calculated should be passed as
`input_ids`.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
past_key_values (`Tuple[Tuple[torch.Tensor]]` of length `config.n_layers`):
Contains precomputed hidden-states (key and values in the attention blocks) as computed by the model (see
`past_key_values` output below). Can be used to speed up sequential decoding. The `input_ids` which have
their past given to this model should not be passed as `input_ids` as they have already been computed.
Each element of `past_key_values` is a tuple (past_key, past_value):
- past_key: [batch_size * num_heads, head_dim, kv_length]
- past_value: [batch_size * num_heads, kv_length, head_dim]
attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
If `past_key_values` is used, optionally only the last `inputs_embeds` have to be input (see
`past_key_values`).
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~file_utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare Bloom Model transformer outputting raw hidden-states without any specific head on top.",
BLOOM_START_DOCSTRING,
)
class BloomModel(BloomPreTrainedModel):
def __init__(self, config: BloomConfig):
super().__init__(config)
self.embed_dim = config.hidden_size
self.num_heads = config.n_head
# Embedding + LN Embedding
self.word_embeddings = nn.Embedding(config.vocab_size, self.embed_dim)
self.word_embeddings_layernorm = LayerNorm(self.embed_dim, eps=config.layer_norm_epsilon)
# Transformer blocks
self.h = nn.ModuleList([BloomBlock(config) for _ in range(config.num_hidden_layers)])
# Final Layer Norm
self.ln_f = LayerNorm(self.embed_dim, eps=config.layer_norm_epsilon)
self.gradient_checkpointing = False
# Initialize weights and apply final processing
self.post_init()
def build_alibi_tensor(self, attention_mask: torch.Tensor, num_heads: int, dtype: torch.dtype) -> torch.Tensor:
return build_alibi_tensor(attention_mask, num_heads, dtype)
def get_input_embeddings(self):
return self.word_embeddings
def set_input_embeddings(self, new_embeddings: torch.Tensor):
self.word_embeddings = new_embeddings
@add_start_docstrings_to_model_forward(BLOOM_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithPastAndCrossAttentions,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.Tensor, torch.Tensor], ...]] = None,
attention_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.LongTensor] = None,
inputs_embeds: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
**deprecated_arguments,
) -> Union[Tuple[torch.Tensor, ...], BaseModelOutputWithPastAndCrossAttentions]:
if deprecated_arguments.pop("position_ids", False) is not False:
# `position_ids` could have been `torch.Tensor` or `None` so defaulting pop to `False` allows to detect if users were passing explicitly `None`
warnings.warn(
"`position_ids` have no functionality in BLOOM and will be removed in v5.0.0. You can safely ignore"
" passing `position_ids`.",
FutureWarning,
)
if len(deprecated_arguments) > 0:
raise ValueError(f"Got unexpected arguments: {deprecated_arguments}")
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
batch_size, seq_length = input_ids.shape
elif inputs_embeds is not None:
batch_size, seq_length, _ = inputs_embeds.shape
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if past_key_values is None:
past_key_values = tuple([None] * len(self.h))
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape batch_size x num_heads x N x N
# head_mask has shape n_layer x batch x num_heads x N x N
head_mask = self.get_head_mask(head_mask, self.config.n_layer)
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
hidden_states = self.word_embeddings_layernorm(inputs_embeds)
presents = () if use_cache else None
all_self_attentions = () if output_attentions else None
all_hidden_states = () if output_hidden_states else None
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning_once(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
# Compute alibi tensor: check build_alibi_tensor documentation
seq_length_with_past = seq_length
past_key_values_length = 0
if past_key_values[0] is not None:
past_key_values_length = past_key_values[0][0].shape[2]
seq_length_with_past = seq_length_with_past + past_key_values_length
if attention_mask is None:
attention_mask = torch.ones((batch_size, seq_length_with_past), device=hidden_states.device)
else:
attention_mask = attention_mask.to(hidden_states.device)
alibi = self.build_alibi_tensor(attention_mask, self.num_heads, dtype=hidden_states.dtype)
causal_mask = _prepare_4d_causal_attention_mask(
attention_mask,
input_shape=(batch_size, seq_length),
inputs_embeds=inputs_embeds,
past_key_values_length=past_key_values_length,
)
causal_mask = causal_mask.bool()
for i, (block, layer_past) in enumerate(zip(self.h, past_key_values)):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if self.gradient_checkpointing and self.training:
outputs = self._gradient_checkpointing_func(
block.__call__,
hidden_states,
alibi,
causal_mask,
layer_past,
head_mask[i],
use_cache,
output_attentions,
)
else:
outputs = block(
hidden_states,
layer_past=layer_past,
attention_mask=causal_mask,
head_mask=head_mask[i],
use_cache=use_cache,
output_attentions=output_attentions,
alibi=alibi,
)
hidden_states = outputs[0]
if use_cache is True:
presents = presents + (outputs[1],)
if output_attentions:
all_self_attentions = all_self_attentions + (outputs[2 if use_cache else 1],)
# Add last hidden state
hidden_states = self.ln_f(hidden_states)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, presents, all_hidden_states, all_self_attentions] if v is not None)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=presents,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
@add_start_docstrings(
"""
The Bloom Model transformer with a language modeling head on top (linear layer with weights tied to the input
embeddings).
""",
BLOOM_START_DOCSTRING,
)
class BloomForCausalLM(BloomPreTrainedModel):
_tied_weights_keys = ["lm_head.weight"]
def __init__(self, config: BloomConfig):
super().__init__(config)
self.transformer = BloomModel(config)
self.lm_head = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
# Initialize weights and apply final processing
self.post_init()
def get_output_embeddings(self):
return self.lm_head
def set_output_embeddings(self, new_embeddings: torch.Tensor):
self.lm_head = new_embeddings
def prepare_inputs_for_generation(
self,
input_ids: torch.LongTensor,
past_key_values: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
**kwargs,
) -> dict:
# only last tokens for input_ids if past is not None
if past_key_values is not None:
past_length = past_key_values[0][0].shape[2]
# Some generation methods already pass only the last input ID
if input_ids.shape[1] > past_length:
remove_prefix_length = past_length
else:
# Default to old behavior: keep only final ID
remove_prefix_length = input_ids.shape[1] - 1
input_ids = input_ids[:, remove_prefix_length:]
# the cache may be in the stardard format (e.g. in contrastive search), convert to bloom's format if needed
if past_key_values[0][0].shape[0] == input_ids.shape[0]:
past_key_values = self._convert_to_bloom_cache(past_key_values)
# if `inputs_embeds` are passed, we only want to use them in the 1st generation step
if inputs_embeds is not None and past_key_values is None:
model_inputs = {"inputs_embeds": inputs_embeds}
else:
model_inputs = {"input_ids": input_ids}
model_inputs.update(
{
"past_key_values": past_key_values,
"use_cache": kwargs.get("use_cache"),
"attention_mask": attention_mask,
}
)
return model_inputs
@add_start_docstrings_to_model_forward(BLOOM_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=CausalLMOutputWithCrossAttentions,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.Tensor, torch.Tensor], ...]] = None,
attention_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
**deprecated_arguments,
) -> Union[Tuple[torch.Tensor], CausalLMOutputWithCrossAttentions]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for language modeling. Note that the labels **are shifted** inside the model, i.e. you can set
`labels = input_ids` Indices are selected in `[-100, 0, ..., config.vocab_size]` All labels set to `-100`
are ignored (masked), the loss is only computed for labels in `[0, ..., config.vocab_size]`
"""
if deprecated_arguments.pop("position_ids", False) is not False:
# `position_ids` could have been `torch.Tensor` or `None` so defaulting pop to `False` allows to detect if users were passing explicitly `None`
warnings.warn(
"`position_ids` have no functionality in BLOOM and will be removed in v5.0.0. You can safely ignore"
" passing `position_ids`.",
FutureWarning,
)
if len(deprecated_arguments) > 0:
raise ValueError(f"Got unexpected arguments: {deprecated_arguments}")
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.transformer(
input_ids,
past_key_values=past_key_values,
attention_mask=attention_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = transformer_outputs[0]
lm_logits = self.lm_head(hidden_states)
loss = None
if labels is not None:
# move labels to correct device to enable model parallelism
labels = labels.to(lm_logits.device)
# Shift so that tokens < n predict n
shift_logits = lm_logits[..., :-1, :].contiguous()
shift_labels = labels[..., 1:].contiguous()
batch_size, seq_length, vocab_size = shift_logits.shape
# Flatten the tokens
loss_fct = CrossEntropyLoss()
loss = loss_fct(
shift_logits.view(batch_size * seq_length, vocab_size), shift_labels.view(batch_size * seq_length)
)
if not return_dict:
output = (lm_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return CausalLMOutputWithCrossAttentions(
loss=loss,
logits=lm_logits,
past_key_values=transformer_outputs.past_key_values,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
def _reorder_cache(
self, past: Tuple[Tuple[torch.Tensor, torch.Tensor], ...], beam_idx: torch.LongTensor
) -> Tuple[Tuple[torch.Tensor, torch.Tensor], ...]:
"""
This function is used to re-order the `past_key_values` cache if [`~PreTrainedModel.beam_search`] or
[`~PreTrainedModel.beam_sample`] is called. This is required to match `past_key_values` with the correct
beam_idx at every generation step.
Output shares the same memory storage as `past`.
"""
standardized_past = self._convert_to_standard_cache(past, batch_size=len(beam_idx))
# Get a copy of `beam_idx` on all the devices where we need those indices.
device_to_beam_idx = {
past_state.device: beam_idx.to(past_state.device) for layer_past in past for past_state in layer_past
}
reordered_past = tuple(
(
layer_past[0].index_select(0, device_to_beam_idx[layer_past[0].device]),
layer_past[1].index_select(0, device_to_beam_idx[layer_past[0].device]),
)
for layer_past in standardized_past
)
return self._convert_to_bloom_cache(reordered_past)
@add_start_docstrings(
"""
The Bloom Model transformer with a sequence classification head on top (linear layer).
[`BloomForSequenceClassification`] uses the last token in order to do the classification, as other causal models
(e.g. GPT-1) do.
Since it does classification on the last token, it requires to know the position of the last token. If a
`pad_token_id` is defined in the configuration, it finds the last token that is not a padding token in each row. If
no `pad_token_id` is defined, it simply takes the last value in each row of the batch. Since it cannot guess the
padding tokens when `inputs_embeds` are passed instead of `input_ids`, it does the same (take the last value in
each row of the batch).
""",
BLOOM_START_DOCSTRING,
)
class BloomForSequenceClassification(BloomPreTrainedModel):
def __init__(self, config: BloomConfig):
super().__init__(config)
self.num_labels = config.num_labels
self.transformer = BloomModel(config)
self.score = nn.Linear(config.hidden_size, config.num_labels, bias=False)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(BLOOM_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=SequenceClassifierOutputWithPast,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.Tensor, torch.Tensor], ...]] = None,
attention_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
**deprecated_arguments,
) -> Union[Tuple[torch.Tensor], SequenceClassifierOutputWithPast]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
if deprecated_arguments.pop("position_ids", False) is not False:
# `position_ids` could have been `torch.Tensor` or `None` so defaulting pop to `False` allows to detect if users were passing explicitly `None`
warnings.warn(
"`position_ids` have no functionality in BLOOM and will be removed in v5.0.0. You can safely ignore"
" passing `position_ids`.",
FutureWarning,
)
if len(deprecated_arguments) > 0:
raise ValueError(f"Got unexpected arguments: {deprecated_arguments}")
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.transformer(
input_ids,
past_key_values=past_key_values,
attention_mask=attention_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = transformer_outputs[0]
logits = self.score(hidden_states)
if input_ids is not None:
batch_size = input_ids.shape[0]
else:
batch_size = inputs_embeds.shape[0]
if self.config.pad_token_id is None and batch_size != 1:
raise ValueError("Cannot handle batch sizes > 1 if no padding token is defined.")
if self.config.pad_token_id is None:
sequence_lengths = -1
else:
if input_ids is not None:
# if no pad token found, use modulo instead of reverse indexing for ONNX compatibility
sequence_lengths = torch.eq(input_ids, self.config.pad_token_id).int().argmax(-1) - 1
sequence_lengths = sequence_lengths % input_ids.shape[-1]
sequence_lengths = sequence_lengths.to(logits.device)
else:
sequence_lengths = -1
logger.warning(
f"{self.__class__.__name__} will not detect padding tokens in `inputs_embeds`. Results may be "
"unexpected if using padding tokens in conjunction with `inputs_embeds.`"
)
pooled_logits = logits[torch.arange(batch_size, device=logits.device), sequence_lengths]
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(pooled_logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(pooled_logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(pooled_logits, labels)
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(pooled_logits, labels)
if not return_dict:
output = (pooled_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutputWithPast(
loss=loss,
logits=pooled_logits,
past_key_values=transformer_outputs.past_key_values,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
@add_start_docstrings(
"""
Bloom Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
BLOOM_START_DOCSTRING,
)
class BloomForTokenClassification(BloomPreTrainedModel):
def __init__(self, config: BloomConfig):
super().__init__(config)
self.num_labels = config.num_labels
self.transformer = BloomModel(config)
if hasattr(config, "classifier_dropout") and config.classifier_dropout is not None:
classifier_dropout = config.classifier_dropout
elif hasattr(config, "hidden_dropout") and config.hidden_dropout is not None:
classifier_dropout = config.hidden_dropout
else:
classifier_dropout = 0.1
self.dropout = nn.Dropout(classifier_dropout)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(BLOOM_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.Tensor, torch.Tensor], ...]] = None,
attention_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
**deprecated_arguments,
) -> Union[Tuple[torch.Tensor], TokenClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
if deprecated_arguments.pop("position_ids", False) is not False:
# `position_ids` could have been `torch.Tensor` or `None` so defaulting pop to `False` allows to detect if users were passing explicitly `None`
warnings.warn(
"`position_ids` have no functionality in BLOOM and will be removed in v5.0.0. You can safely ignore"
" passing `position_ids`.",
FutureWarning,
)
if len(deprecated_arguments) > 0:
raise ValueError(f"Got unexpected arguments: {deprecated_arguments}")
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.transformer(
input_ids,
past_key_values=past_key_values,
attention_mask=attention_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = transformer_outputs[0]
hidden_states = self.dropout(hidden_states)
logits = self.classifier(hidden_states)
loss = None
if labels is not None:
# move labels to correct device to enable model parallelism
labels = labels.to(logits.device)
batch_size, seq_length = labels.shape
loss_fct = CrossEntropyLoss()
loss = loss_fct(
logits.view(batch_size * seq_length, self.num_labels), labels.view(batch_size * seq_length)
)
if not return_dict:
output = (logits,) + transformer_outputs[2:]
return ((loss,) + output) if loss is not None else output
return TokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
@add_start_docstrings(
"""
The BLOOM Model transformer with a span classification head on top for extractive question-answering tasks like
SQuAD (a linear layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
BLOOM_START_DOCSTRING,
)
class BloomForQuestionAnswering(BloomPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.transformer = BloomModel(config)
self.qa_outputs = nn.Linear(config.hidden_size, 2)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(BLOOM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
start_positions: Optional[torch.LongTensor] = None,
end_positions: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, QuestionAnsweringModelOutput]:
r"""
start_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.transformer(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = logits.split(1, dim=-1)
start_logits = start_logits.squeeze(-1).contiguous()
end_logits = end_logits.squeeze(-1).contiguous()
total_loss = None
if start_positions is not None and end_positions is not None:
# If we are on multi-GPU, split add a dimension
if len(start_positions.size()) > 1:
start_positions = start_positions.squeeze(-1)
if len(end_positions.size()) > 1:
end_positions = end_positions.squeeze(-1)
# sometimes the start/end positions are outside our model inputs, we ignore these terms
ignored_index = start_logits.size(1)
start_positions = start_positions.clamp(0, ignored_index)
end_positions = end_positions.clamp(0, ignored_index)
loss_fct = CrossEntropyLoss(ignore_index=ignored_index)
start_loss = loss_fct(start_logits, start_positions)
end_loss = loss_fct(end_logits, end_positions)
total_loss = (start_loss + end_loss) / 2
if not return_dict:
output = (start_logits, end_logits) + outputs[2:]
return ((total_loss,) + output) if total_loss is not None else output
return QuestionAnsweringModelOutput(
loss=total_loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/bloom/__init__.py | # Copyright 2022 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_flax_available,
is_tokenizers_available,
is_torch_available,
)
_import_structure = {
"configuration_bloom": ["BLOOM_PRETRAINED_CONFIG_ARCHIVE_MAP", "BloomConfig", "BloomOnnxConfig"],
}
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["tokenization_bloom_fast"] = ["BloomTokenizerFast"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_bloom"] = [
"BLOOM_PRETRAINED_MODEL_ARCHIVE_LIST",
"BloomForCausalLM",
"BloomModel",
"BloomPreTrainedModel",
"BloomForSequenceClassification",
"BloomForTokenClassification",
"BloomForQuestionAnswering",
]
try:
if not is_flax_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_flax_bloom"] = [
"FlaxBloomForCausalLM",
"FlaxBloomModel",
"FlaxBloomPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_bloom import BLOOM_PRETRAINED_CONFIG_ARCHIVE_MAP, BloomConfig, BloomOnnxConfig
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .tokenization_bloom_fast import BloomTokenizerFast
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_bloom import (
BLOOM_PRETRAINED_MODEL_ARCHIVE_LIST,
BloomForCausalLM,
BloomForQuestionAnswering,
BloomForSequenceClassification,
BloomForTokenClassification,
BloomModel,
BloomPreTrainedModel,
)
try:
if not is_flax_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_flax_bloom import FlaxBloomForCausalLM, FlaxBloomModel, FlaxBloomPreTrainedModel
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/bloom/modeling_flax_bloom.py | # coding=utf-8
# Copyright 2023 HuggingFace Inc. Team and Bigscience Workshop. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Flax BLOOM model."""
import math
from functools import partial
from typing import Optional, Tuple
import flax.linen as nn
import jax
import jax.numpy as jnp
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.linen import combine_masks, dot_product_attention_weights, make_causal_mask
from flax.linen.activation import tanh
from flax.traverse_util import flatten_dict, unflatten_dict
from jax import lax
from ...modeling_flax_outputs import (
FlaxBaseModelOutput,
FlaxBaseModelOutputWithPastAndCrossAttentions,
FlaxCausalLMOutput,
)
from ...modeling_flax_utils import FlaxPreTrainedModel, append_call_sample_docstring
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_bloom import BloomConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "bigscience/bloom"
_CONFIG_FOR_DOC = "BloomConfig"
BLOOM_START_DOCSTRING = r"""
This model inherits from [`FlaxPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a Flax Linen
[flax.nn.Module](https://flax.readthedocs.io/en/latest/_autosummary/flax.nn.module.html) subclass. Use it as a
regular Flax Module and refer to the Flax documentation for all matter related to general usage and behavior.
Finally, this model supports inherent JAX features such as:
- [Just-In-Time (JIT) compilation](https://jax.readthedocs.io/en/latest/jax.html#just-in-time-compilation-jit)
- [Automatic Differentiation](https://jax.readthedocs.io/en/latest/jax.html#automatic-differentiation)
- [Vectorization](https://jax.readthedocs.io/en/latest/jax.html#vectorization-vmap)
- [Parallelization](https://jax.readthedocs.io/en/latest/jax.html#parallelization-pmap)
Parameters:
config ([`BloomConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~FlaxPreTrainedModel.from_pretrained`] method to load the model weights.
dtype (`jax.numpy.dtype`, *optional*, defaults to `jax.numpy.float32`):
The data type of the computation. Can be one of `jax.numpy.float32`, `jax.numpy.float16` (on GPUs) and
`jax.numpy.bfloat16` (on TPUs).
This can be used to enable mixed-precision training or half-precision inference on GPUs or TPUs. If
specified all the computation will be performed with the given `dtype`.
**Note that this only specifies the dtype of the computation and does not influence the dtype of model
parameters.**
If you wish to change the dtype of the model parameters, see [`~FlaxPreTrainedModel.to_fp16`] and
[`~FlaxPreTrainedModel.to_bf16`].
"""
BLOOM_INPUTS_DOCSTRING = r"""
Args:
input_ids (`numpy.ndarray` of shape `(batch_size, input_ids_length)`):
`input_ids_length` = `sequence_length`. Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`BloomTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`numpy.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
past_key_values (`Dict[str, np.ndarray]`, *optional*, returned by `init_cache` or when passing previous `past_key_values`):
Dictionary of pre-computed hidden-states (key and values in the attention blocks) that can be used for fast
auto-regressive decoding. Pre-computed key and value hidden-states are of shape *[batch_size, max_length]*.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
def build_alibi_tensor(attention_mask: jnp.ndarray, num_heads: int, dtype: Optional[jnp.dtype] = jnp.float32):
"""
Flax implementation of the BLOOM Alibi tensor. BLOOM Alibi tensor is not causal as the original paper mentions, it
relies on a translation invariance of softmax for quick implementation: with l being a tensor, and a fixed value
`softmax(l+a) = softmax(l)`. Based on
https://github.com/ofirpress/attention_with_linear_biases/blob/a35aaca144e0eb6b789dfcb46784c4b8e31b7983/fairseq/models/transformer.py#L742
Link to paper: https://arxiv.org/abs/2108.12409
Args:
attention_mask (`jnp.ndarray`):
Token-wise attention mask, this should be of shape `(batch_size, max_seq_len)`.
num_heads (`int`):
Number of attention heads.
dtype (`jnp.dtype`, *optional*, defaults to `jnp.float32`):
The data type (dtype) of the output tensor.
Returns: Alibi tensor of shape `(batch_size * num_heads, 1, max_seq_len)`.
"""
batch_size, seq_length = attention_mask.shape
closest_power_of_2 = 2 ** math.floor(math.log2(num_heads))
base = jnp.array(2 ** (-(2 ** -(math.log2(closest_power_of_2) - 3))), dtype=jnp.float32)
powers = jnp.arange(1, 1 + closest_power_of_2, dtype=jnp.float32)
slopes = jax.lax.pow(base, powers)
if closest_power_of_2 != num_heads:
extra_base = jnp.array(2 ** (-(2 ** -(math.log2(2 * closest_power_of_2) - 3))), dtype=jnp.float32)
num_remaining_heads = min(closest_power_of_2, num_heads - closest_power_of_2)
extra_powers = jnp.arange(1, 1 + 2 * num_remaining_heads, 2, dtype=jnp.float32)
slopes = jnp.cat([slopes, jax.lax.pow(extra_base, extra_powers)], axis=0)
# Note: the Alibi tensor will added to the attention bias that will be applied to the query, key product of attention
# therefore, Alibi will have to be of shape (batch_size, num_heads, query_length, key_length)
# => here we set (batch_size=1, num_heads=num_heads, query_length=1, key_length=max_length)
# so that the query_length dimension will then be broadcast correctly.
# This is more or less identical to T5's relative position bias:
# https://github.com/huggingface/transformers/blob/f681437203baa7671de3174b0fa583c349d9d5e1/src/transformers/models/t5/modeling_t5.py#L527
arange_tensor = ((attention_mask.cumsum(axis=-1) - 1) * attention_mask)[:, None, :]
alibi = slopes[..., None] * arange_tensor
alibi = jnp.expand_dims(alibi, axis=2)
return jnp.asarray(alibi, dtype)
class FlaxBloomAttention(nn.Module):
config: BloomConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.hidden_size = self.config.hidden_size
self.num_heads = self.config.n_head
self.head_dim = self.hidden_size // self.num_heads
self.attention_softmax_in_fp32 = self.dtype is not jnp.float32
if self.head_dim * self.num_heads != self.hidden_size:
raise ValueError(
f"`hidden_size` must be divisible by `num_heads` (got `hidden_size`: {self.hidden_size} and "
f"`num_heads`: {self.num_heads})."
)
dense = partial(
nn.Dense,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(self.config.initializer_range),
)
self.query_key_value = dense(self.hidden_size * 3)
self.dense = dense(self.hidden_size)
self.resid_dropout = nn.Dropout(rate=self.config.hidden_dropout)
def _split_heads(self, hidden_states):
return hidden_states.reshape(hidden_states.shape[:-1] + (self.num_heads, self.head_dim * 3))
def _merge_heads(self, hidden_states):
return hidden_states.reshape(hidden_states.shape[:2] + (self.hidden_size,))
@nn.compact
# Copied from transformers.models.gptj.modeling_flax_gptj.FlaxGPTJAttention._concatenate_to_cache
def _concatenate_to_cache(self, key, value, query, attention_mask):
"""
This function takes projected key, value states from a single input token and concatenates the states to cached
states from previous steps. This function is slighly adapted from the official Flax repository:
https://github.com/google/flax/blob/491ce18759622506588784b4fca0e4bf05f8c8cd/flax/linen/attention.py#L252
"""
# detect if we're initializing by absence of existing cache data.
is_initialized = self.has_variable("cache", "cached_key")
cached_key = self.variable("cache", "cached_key", jnp.zeros, key.shape, key.dtype)
cached_value = self.variable("cache", "cached_value", jnp.zeros, value.shape, value.dtype)
cache_index = self.variable("cache", "cache_index", lambda: jnp.array(0, dtype=jnp.int32))
if is_initialized:
*batch_dims, max_length, num_heads, depth_per_head = cached_key.value.shape
# update key, value caches with our new 1d spatial slices
cur_index = cache_index.value
indices = (0,) * len(batch_dims) + (cur_index, 0, 0)
key = lax.dynamic_update_slice(cached_key.value, key, indices)
value = lax.dynamic_update_slice(cached_value.value, value, indices)
cached_key.value = key
cached_value.value = value
num_updated_cache_vectors = query.shape[1]
cache_index.value = cache_index.value + num_updated_cache_vectors
# causal mask for cached decoder self-attention: our single query position should only attend to those key
# positions that have already been generated and cached, not the remaining zero elements.
pad_mask = jnp.broadcast_to(
jnp.arange(max_length) < cur_index + num_updated_cache_vectors,
tuple(batch_dims) + (1, num_updated_cache_vectors, max_length),
)
attention_mask = combine_masks(pad_mask, attention_mask)
return key, value, attention_mask
def __call__(
self,
hidden_states,
residual,
alibi,
attention_mask=None,
deterministic: bool = True,
init_cache: bool = False,
output_attentions: bool = False,
):
batch_size, seq_length = hidden_states.shape[:2]
# proj q, k, v
fused_qkv = self.query_key_value(hidden_states)
fused_qkv = self._split_heads(fused_qkv)
query, key, value = jnp.split(fused_qkv, 3, axis=-1)
causal_attention_mask = make_causal_mask(attention_mask, dtype="bool")
# for fast decoding causal attention mask should be shifted
causal_attention_mask_shift = (
self.variables["cache"]["cache_index"] if self.has_variable("cache", "cached_key") else 0
)
# fast decoding for generate requires special attention_mask
if self.has_variable("cache", "cached_key"):
max_decoder_length = self.variables["cache"]["cached_key"].shape[1]
causal_attention_mask = jax.lax.dynamic_slice(
causal_attention_mask,
(0, 0, causal_attention_mask_shift, 0),
(1, 1, seq_length, max_decoder_length),
)
# broadcast causal attention mask & attention mask to fit for merge
causal_attention_mask = jnp.broadcast_to(
causal_attention_mask, (batch_size,) + causal_attention_mask.shape[1:]
)
attention_mask = jnp.broadcast_to(jnp.expand_dims(attention_mask, axis=(-3, -2)), causal_attention_mask.shape)
attention_mask = combine_masks(attention_mask, causal_attention_mask)
dropout_rng = None
if not deterministic and self.config.attention_dropout > 0.0:
dropout_rng = self.make_rng("dropout")
# During fast autoregressive decoding, we feed one position at a time,
# and cache the keys and values step by step.
if self.has_variable("cache", "cached_key") or init_cache:
key, value, attention_mask = self._concatenate_to_cache(key, value, query, attention_mask)
# transform boolean mask into float mask
mask_value = jnp.finfo(self.dtype).min
attention_bias = lax.select(
attention_mask > 0,
jnp.full(attention_mask.shape, 0.0).astype(self.dtype),
jnp.full(attention_mask.shape, mask_value).astype(self.dtype),
)
attention_bias = attention_bias + alibi
# Cast in fp32 if the original dtype is different from fp32
attention_dtype = jnp.float32 if self.attention_softmax_in_fp32 else self.dtype
attn_weights = dot_product_attention_weights(
query,
key,
bias=attention_bias,
dropout_rng=dropout_rng,
dropout_rate=self.config.attention_dropout,
deterministic=deterministic,
dtype=attention_dtype,
)
# Cast back in the original dtype if the native dtype is not fp32
if self.attention_softmax_in_fp32:
attn_weights = attn_weights.astype(self.dtype)
attn_output = jnp.einsum("...hqk,...khd->...qhd", attn_weights, value)
attn_output = self._merge_heads(attn_output)
attn_output = self.dense(attn_output)
attn_output = self.resid_dropout(attn_output, deterministic=deterministic)
attn_output = attn_output + residual
outputs = (attn_output, attn_weights) if output_attentions else (attn_output,)
return outputs
class BloomGELU(nn.Module):
def setup(self):
self.dtype = jnp.float32
def __call__(self, x):
return x * 0.5 * (1.0 + tanh(0.79788456 * x * (1 + 0.044715 * x * x)))
class FlaxBloomMLP(nn.Module):
config: BloomConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
hidden_size = self.config.hidden_size
kernel_init = jax.nn.initializers.normal(self.config.initializer_range)
self.dense_h_to_4h = nn.Dense(4 * hidden_size, dtype=self.dtype, kernel_init=kernel_init)
self.dense_4h_to_h = nn.Dense(hidden_size, dtype=self.dtype, kernel_init=kernel_init)
self.hidden_dropout = nn.Dropout(self.config.hidden_dropout)
self.act = BloomGELU()
def __call__(self, hidden_states, residual, deterministic: bool = True):
hidden_states = self.dense_h_to_4h(hidden_states)
hidden_states = self.act(hidden_states)
intermediate_output = self.dense_4h_to_h(hidden_states)
intermediate_output = intermediate_output + residual
hidden_states = self.hidden_dropout(intermediate_output, deterministic=deterministic)
return hidden_states
class FlaxBloomBlock(nn.Module):
config: BloomConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.input_layernorm = nn.LayerNorm(epsilon=self.config.layer_norm_epsilon, dtype=self.dtype)
self.self_attention = FlaxBloomAttention(self.config, dtype=self.dtype)
self.post_attention_layernorm = nn.LayerNorm(epsilon=self.config.layer_norm_epsilon, dtype=self.dtype)
self.mlp = FlaxBloomMLP(self.config, dtype=self.dtype)
self.apply_residual_connection_post_layernorm = self.config.apply_residual_connection_post_layernorm
self.hidden_dropout = self.config.hidden_dropout
def __call__(
self,
hidden_states,
alibi,
attention_mask=None,
deterministic: bool = True,
init_cache: bool = False,
output_attentions: bool = False,
):
layernorm_output = self.input_layernorm(hidden_states)
# layer norm before saving residual if config calls for it
if self.apply_residual_connection_post_layernorm:
residual = layernorm_output
else:
residual = hidden_states
# self-attention
attn_outputs = self.self_attention(
layernorm_output,
residual=residual,
alibi=alibi,
attention_mask=attention_mask,
deterministic=deterministic,
init_cache=init_cache,
output_attentions=output_attentions,
)
attention_output = attn_outputs[0]
outputs = attn_outputs[1:]
post_layernorm = self.post_attention_layernorm(attention_output)
# set residual based on config
if self.apply_residual_connection_post_layernorm:
residual = post_layernorm
else:
residual = attention_output
output = self.mlp(post_layernorm, residual, deterministic=deterministic)
outputs = (output,) + outputs
return outputs
class FlaxBloomPreTrainedModel(FlaxPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = BloomConfig
base_model_prefix = "transformer"
module_class: nn.Module = None
def __init__(
self,
config: BloomConfig,
input_shape: Tuple = (1, 1),
seed: int = 0,
dtype: jnp.dtype = jnp.float32,
_do_init: bool = True,
**kwargs,
):
module = self.module_class(config=config, dtype=dtype, **kwargs)
super().__init__(config, module, input_shape=input_shape, seed=seed, dtype=dtype, _do_init=_do_init)
def init_weights(self, rng: jax.random.PRNGKey, input_shape: Tuple, params: FrozenDict = None) -> FrozenDict:
# init input tensors
input_ids = jnp.zeros(input_shape, dtype="i4")
attention_mask = jnp.ones_like(input_ids)
params_rng, dropout_rng = jax.random.split(rng)
rngs = {"params": params_rng, "dropout": dropout_rng}
random_params = self.module.init(rngs, input_ids, attention_mask, return_dict=False)["params"]
if params is not None:
random_params = flatten_dict(unfreeze(random_params))
params = flatten_dict(unfreeze(params))
for missing_key in self._missing_keys:
params[missing_key] = random_params[missing_key]
self._missing_keys = set()
return freeze(unflatten_dict(params))
else:
return random_params
def init_cache(self, batch_size, max_length):
r"""
Args:
batch_size (`int`):
batch_size used for fast auto-regressive decoding. Defines the batch size of the initialized cache.
max_length (`int`):
maximum possible length for auto-regressive decoding. Defines the sequence length of the initialized
cache.
"""
# init input variables to retrieve cache
input_ids = jnp.ones((batch_size, max_length), dtype="i4")
attention_mask = jnp.ones_like(input_ids)
init_variables = self.module.init(
jax.random.PRNGKey(0), input_ids, attention_mask, return_dict=False, init_cache=True
)
return unfreeze(init_variables["cache"])
@add_start_docstrings_to_model_forward(BLOOM_INPUTS_DOCSTRING)
def __call__(
self,
input_ids,
attention_mask=None,
past_key_values: dict = None,
params: dict = None,
dropout_rng: jax.random.PRNGKey = None,
train: bool = False,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
):
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
batch_size, sequence_length = input_ids.shape
if attention_mask is None:
attention_mask = jnp.ones((batch_size, sequence_length))
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
inputs = {"params": params or self.params}
# If past_key_values are passed then cache is already initialized a private flag init_cache has to be passed
# down to ensure cache is used. It has to be made sure that cache is marked as mutable so that it can be
# changed by FlaxBloomAttention module
if past_key_values:
inputs["cache"] = past_key_values
mutable = ["cache"]
else:
mutable = False
outputs = self.module.apply(
inputs,
jnp.array(input_ids, dtype="i4"),
jnp.array(attention_mask, dtype="i4"),
not train,
False,
output_attentions,
output_hidden_states,
return_dict,
rngs=rngs,
mutable=mutable,
)
# add updated cache to model output
if past_key_values is not None and return_dict:
outputs, past_key_values = outputs
outputs["past_key_values"] = unfreeze(past_key_values["cache"])
return outputs
elif past_key_values is not None and not return_dict:
outputs, past_key_values = outputs
outputs = outputs[:1] + (unfreeze(past_key_values["cache"]),) + outputs[1:]
return outputs
class FlaxBloomBlockCollection(nn.Module):
config: BloomConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.layers = [
FlaxBloomBlock(self.config, name=str(layer_number), dtype=self.dtype)
for layer_number in range(self.config.num_hidden_layers)
]
def __call__(
self,
hidden_states,
alibi,
attention_mask=None,
deterministic: bool = True,
init_cache: bool = False,
output_attentions: bool = False,
output_hidden_states: bool = False,
):
all_attentions = () if output_attentions else None
all_hidden_states = () if output_hidden_states else None
for layer_number in range(self.config.num_hidden_layers):
if output_hidden_states:
all_hidden_states += (hidden_states,)
layer_outputs = self.layers[layer_number](
hidden_states,
alibi=alibi,
attention_mask=attention_mask,
deterministic=deterministic,
init_cache=init_cache,
output_attentions=output_attentions,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_attentions += (layer_outputs[1],)
# this contains possible `None` values - `FlaxBloomModule` will filter them out
outputs = (hidden_states, all_hidden_states, all_attentions)
return outputs
class FlaxBloomModule(nn.Module):
config: BloomConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.embed_dim = self.config.hidden_size
# word embeddings (no positional embedding layer)
self.word_embeddings = nn.Embed(
self.config.vocab_size,
self.embed_dim,
embedding_init=jax.nn.initializers.normal(stddev=self.config.initializer_range),
dtype=self.dtype,
)
# post-embedding layernorm
self.word_embeddings_layernorm = nn.LayerNorm(epsilon=self.config.layer_norm_epsilon, dtype=self.dtype)
# transformer layers
self.h = FlaxBloomBlockCollection(self.config, dtype=self.dtype)
# final layernorm
self.ln_f = nn.LayerNorm(epsilon=self.config.layer_norm_epsilon, dtype=self.dtype)
def __call__(
self,
input_ids=None,
attention_mask=None,
deterministic=True,
init_cache: bool = False,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
inputs_embeds = self.word_embeddings(input_ids)
# do post-embedding layernorm
hidden_states = self.word_embeddings_layernorm(inputs_embeds)
# build alibi depending on `attention_mask`
alibi = build_alibi_tensor(attention_mask, self.config.n_head, dtype=hidden_states.dtype)
outputs = self.h(
hidden_states,
alibi=alibi,
attention_mask=attention_mask,
deterministic=deterministic,
init_cache=init_cache,
output_hidden_states=output_hidden_states,
output_attentions=output_attentions,
)
hidden_states = outputs[0]
hidden_states = self.ln_f(hidden_states)
if output_hidden_states:
all_hidden_states = outputs[1] + (hidden_states,)
outputs = (hidden_states, all_hidden_states) + outputs[2:]
else:
outputs = (hidden_states,) + outputs[1:]
if not return_dict:
return tuple(v for v in [outputs[0], outputs[-1]] if v is not None)
return FlaxBaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
hidden_states=outputs[1],
attentions=outputs[-1],
)
@add_start_docstrings(
"The bare Bloom Model transformer outputting raw hidden-states without any specific head on top.",
BLOOM_START_DOCSTRING,
)
# Copied from transformers.models.gpt_neo.modeling_flax_gpt_neo.FlaxGPTNeoModel with GPTNeo->Bloom
class FlaxBloomModel(FlaxBloomPreTrainedModel):
module_class = FlaxBloomModule
append_call_sample_docstring(FlaxBloomModel, _CHECKPOINT_FOR_DOC, FlaxBaseModelOutput, _CONFIG_FOR_DOC)
class FlaxBloomForCausalLMModule(nn.Module):
config: BloomConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.transformer = FlaxBloomModule(self.config, dtype=self.dtype)
self.lm_head = nn.Dense(
self.config.vocab_size,
use_bias=False,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(stddev=self.config.initializer_range),
)
def __call__(
self,
input_ids,
attention_mask,
deterministic: bool = True,
init_cache: bool = False,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
outputs = self.transformer(
input_ids,
attention_mask=attention_mask,
deterministic=deterministic,
init_cache=init_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0]
if self.config.tie_word_embeddings:
shared_kernel = self.transformer.variables["params"]["word_embeddings"]["embedding"].T
lm_logits = self.lm_head.apply({"params": {"kernel": shared_kernel}}, hidden_states)
else:
lm_logits = self.lm_head(hidden_states)
if not return_dict:
return (lm_logits,) + outputs[1:]
return FlaxCausalLMOutput(logits=lm_logits, hidden_states=outputs.hidden_states, attentions=outputs.attentions)
@add_start_docstrings(
"""
The Bloom Model transformer with a language modeling head on top (linear layer with weights tied to the input
embeddings).
""",
BLOOM_START_DOCSTRING,
)
class FlaxBloomForCausalLM(FlaxBloomPreTrainedModel):
module_class = FlaxBloomForCausalLMModule
def prepare_inputs_for_generation(self, input_ids, max_length, attention_mask: Optional[jax.Array] = None):
# initializing the cache
batch_size, seq_length = input_ids.shape
past_key_values = self.init_cache(batch_size, max_length)
# Note that usually one would have to put 0's in the attention_mask for
# x > input_ids.shape[-1] and x < cache_length. But since Bloom uses a causal mask,
# those positions are masked anyway. Thus, we can create a single static attention_mask here,
# which is more efficient for compilation
extended_attention_mask = jnp.ones((batch_size, max_length), dtype="i4")
if attention_mask is not None:
extended_attention_mask = lax.dynamic_update_slice(extended_attention_mask, attention_mask, (0, 0))
return {
"past_key_values": past_key_values,
"attention_mask": extended_attention_mask,
}
def update_inputs_for_generation(self, model_outputs, model_kwargs):
model_kwargs["past_key_values"] = model_outputs.past_key_values
return model_kwargs
append_call_sample_docstring(FlaxBloomForCausalLM, _CHECKPOINT_FOR_DOC, FlaxCausalLMOutput, _CONFIG_FOR_DOC)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/bloom/configuration_bloom.py | # coding=utf-8
# Copyright 2022 the Big Science Workshop and HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Bloom configuration"""
from collections import OrderedDict
from typing import TYPE_CHECKING, Any, List, Mapping, Optional
from packaging import version
if TYPE_CHECKING:
from ... import PreTrainedTokenizer, TensorType
from ...configuration_utils import PretrainedConfig
from ...onnx import OnnxConfigWithPast, PatchingSpec
from ...utils import is_torch_available, logging
logger = logging.get_logger(__name__)
BLOOM_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"bigscience/bloom": "https://huggingface.co/bigscience/bloom/resolve/main/config.json",
"bigscience/bloom-560m": "https://huggingface.co/bigscience/bloom-560m/blob/main/config.json",
"bigscience/bloom-1b1": "https://huggingface.co/bigscience/bloom-1b1/blob/main/config.json",
"bigscience/bloom-1b7": "https://huggingface.co/bigscience/bloom-1b7/blob/main/config.json",
"bigscience/bloom-3b": "https://huggingface.co/bigscience/bloom-3b/blob/main/config.json",
"bigscience/bloom-7b1": "https://huggingface.co/bigscience/bloom-7b1/blob/main/config.json",
}
class BloomConfig(PretrainedConfig):
"""
This is the configuration class to store the configuration of a [`BloomModel`]. It is used to instantiate a Bloom
model according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to the Bloom architecture
[bigscience/bloom](https://huggingface.co/bigscience/bloom).
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 250880):
Vocabulary size of the Bloom model. Defines the maximum number of different tokens that can be represented
by the `inputs_ids` passed when calling [`BloomModel`]. Check [this
discussion](https://huggingface.co/bigscience/bloom/discussions/120#633d28389addb8530b406c2a) on how the
`vocab_size` has been defined.
hidden_size (`int`, *optional*, defaults to 64):
Dimensionality of the embeddings and hidden states.
n_layer (`int`, *optional*, defaults to 2):
Number of hidden layers in the Transformer encoder.
n_head (`int`, *optional*, defaults to 8):
Number of attention heads for each attention layer in the Transformer encoder.
layer_norm_epsilon (`float`, *optional*, defaults to 1e-5):
The epsilon to use in the layer normalization layers.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
apply_residual_connection_post_layernorm (`bool`, *optional*, defaults to `False`):
If enabled, use the layer norm of the hidden states as the residual in the transformer blocks
hidden_dropout (`float`, *optional*, defaults to 0.1):
Dropout rate of the dropout function on the bias dropout.
attention_dropout (`float`, *optional*, defaults to 0.1):
Dropout rate applied to the attention probs
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models).
pretraining_tp (`int`, *optional*, defaults to `1`):
Experimental feature. Tensor parallelism rank used during pretraining with Megatron. Please refer to [this
document](https://huggingface.co/docs/transformers/parallelism) to understand more about it. This value is
necessary to ensure exact reproducibility of the pretraining results. Please refer to [this
issue](https://github.com/pytorch/pytorch/issues/76232). Note also that this is enabled only when
`slow_but_exact=True`.
slow_but_exact (`bool`, *optional*, defaults to `False`):
Experimental feature. Whether to use slow but exact implementation of the attention mechanism. While
merging the TP rank tensors, due to slicing operations the results may be slightly different between the
model trained on Megatron and our model. Please refer to [this
issue](https://github.com/pytorch/pytorch/issues/76232). A solution to obtain more accurate results is to
enable this feature. Enabling this will hurt the computational time of the inference. Will be probably
resolved in the future once the main model has been fine-tuned with TP_rank=1.
Example:
```python
>>> from transformers import BloomConfig, BloomModel
>>> # Initializing a Bloom configuration
>>> configuration = BloomConfig()
>>> # Initializing a model (with random weights) from the configuration
>>> model = BloomModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "bloom"
keys_to_ignore_at_inference = ["past_key_values"]
attribute_map = {
"num_hidden_layers": "n_layer",
"num_attention_heads": "n_head",
}
def __init__(
self,
vocab_size=250880,
hidden_size=64,
n_layer=2,
n_head=8,
layer_norm_epsilon=1e-5,
initializer_range=0.02,
use_cache=True,
bos_token_id=1,
eos_token_id=2,
apply_residual_connection_post_layernorm=False,
hidden_dropout=0.0,
attention_dropout=0.0,
pretraining_tp=1, # TP rank used when training with megatron
slow_but_exact=False,
**kwargs,
):
self.vocab_size = vocab_size
# Backward compatibility with n_embed kwarg
n_embed = kwargs.pop("n_embed", None)
self.hidden_size = hidden_size if n_embed is None else n_embed
self.n_layer = n_layer
self.n_head = n_head
self.layer_norm_epsilon = layer_norm_epsilon
self.initializer_range = initializer_range
self.use_cache = use_cache
self.pretraining_tp = pretraining_tp
self.apply_residual_connection_post_layernorm = apply_residual_connection_post_layernorm
self.hidden_dropout = hidden_dropout
self.attention_dropout = attention_dropout
self.bos_token_id = bos_token_id
self.eos_token_id = eos_token_id
self.slow_but_exact = slow_but_exact
super().__init__(bos_token_id=bos_token_id, eos_token_id=eos_token_id, **kwargs)
class BloomOnnxConfig(OnnxConfigWithPast):
torch_onnx_minimum_version = version.parse("1.12")
def __init__(
self,
config: PretrainedConfig,
task: str = "default",
patching_specs: List[PatchingSpec] = None,
use_past: bool = False,
):
super().__init__(config, task=task, patching_specs=patching_specs, use_past=use_past)
if not getattr(self._config, "pad_token_id", None):
# TODO: how to do that better?
self._config.pad_token_id = 0
@property
def inputs(self) -> Mapping[str, Mapping[int, str]]:
common_inputs = OrderedDict({"input_ids": {0: "batch", 1: "sequence"}})
if self.use_past:
# BLOOM stores values on dynamic axis 2. For more details see: https://github.com/huggingface/transformers/pull/18344
self.fill_with_past_key_values_(common_inputs, direction="inputs", inverted_values_shape=True)
common_inputs["attention_mask"] = {0: "batch", 1: "past_sequence + sequence"}
else:
common_inputs["attention_mask"] = {0: "batch", 1: "sequence"}
return common_inputs
@property
def num_layers(self) -> int:
return self._config.n_layer
@property
def num_attention_heads(self) -> int:
return self._config.n_head
@property
def atol_for_validation(self) -> float:
return 1e-3
def generate_dummy_inputs(
self,
tokenizer: "PreTrainedTokenizer",
batch_size: int = -1,
seq_length: int = -1,
is_pair: bool = False,
framework: Optional["TensorType"] = None,
) -> Mapping[str, Any]:
common_inputs = super(OnnxConfigWithPast, self).generate_dummy_inputs(
tokenizer, batch_size=batch_size, seq_length=seq_length, is_pair=is_pair, framework=framework
)
# We need to order the input in the way they appears in the forward()
ordered_inputs = OrderedDict({"input_ids": common_inputs["input_ids"]})
# Need to add the past_keys
if self.use_past:
if not is_torch_available():
raise ValueError("Cannot generate dummy past_keys inputs without PyTorch installed.")
else:
import torch
batch, seqlen = common_inputs["input_ids"].shape
# Not using the same length for past_key_values
past_key_values_length = seqlen + 2
head_dim = self._config.hidden_size // self.num_attention_heads
past_key_shape = (
batch * self.num_attention_heads,
head_dim,
past_key_values_length,
)
past_value_shape = (
batch * self.num_attention_heads,
past_key_values_length,
head_dim,
)
ordered_inputs["past_key_values"] = [
(torch.zeros(past_key_shape), torch.zeros(past_value_shape)) for _ in range(self.num_layers)
]
ordered_inputs["attention_mask"] = common_inputs["attention_mask"]
if self.use_past:
mask_dtype = ordered_inputs["attention_mask"].dtype
ordered_inputs["attention_mask"] = torch.cat(
[ordered_inputs["attention_mask"], torch.ones(batch, past_key_values_length, dtype=mask_dtype)], dim=1
)
return ordered_inputs
@property
def default_onnx_opset(self) -> int:
return 13
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/bloom/tokenization_bloom_fast.py | # coding=utf-8
# Copyright 2022 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes for Bloom."""
import pickle
from typing import Optional, Tuple
from ...tokenization_utils_base import BatchEncoding
from ...tokenization_utils_fast import PreTrainedTokenizerFast
from ...utils import logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"tokenizer_file": "tokenizer.json"}
PRETRAINED_VOCAB_FILES_MAP = {
"tokenizer_file": {
"bigscience/tokenizer": "https://huggingface.co/bigscience/tokenizer/blob/main/tokenizer.json",
"bigscience/bloom-560m": "https://huggingface.co/bigscience/bloom-560m/blob/main/tokenizer.json",
"bigscience/bloom-1b1": "https://huggingface.co/bigscience/bloom-1b1/blob/main/tokenizer.json",
"bigscience/bloom-1b7": "https://huggingface.co/bigscience/bloom-1b7/blob/main/tokenizer.json",
"bigscience/bloom-3b": "https://huggingface.co/bigscience/bloom-3b/blob/main/tokenizer.json",
"bigscience/bloom-7b1": "https://huggingface.co/bigscience/bloom-7b1/blob/main/tokenizer.json",
"bigscience/bloom": "https://huggingface.co/bigscience/bloom/blob/main/tokenizer.json",
},
}
class BloomTokenizerFast(PreTrainedTokenizerFast):
"""
Construct a "fast" Bloom tokenizer (backed by HuggingFace's *tokenizers* library). Based on byte-level
Byte-Pair-Encoding.
This tokenizer has been trained to treat spaces like parts of the tokens (a bit like sentencepiece) so a word will
be encoded differently whether it is at the beginning of the sentence (without space) or not:
```python
>>> from transformers import BloomTokenizerFast
>>> tokenizer = BloomTokenizerFast.from_pretrained("bigscience/bloom")
>>> tokenizer("Hello world")["input_ids"]
[59414, 8876]
>>> tokenizer(" Hello world")["input_ids"]
[86153, 8876]
```
You can get around that behavior by passing `add_prefix_space=True` when instantiating this tokenizer, but since
the model was not pretrained this way, it might yield a decrease in performance.
<Tip>
When used with `is_split_into_words=True`, this tokenizer needs to be instantiated with `add_prefix_space=True`.
</Tip>
This tokenizer inherits from [`PreTrainedTokenizerFast`] which contains most of the main methods. Users should
refer to this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
Path to the vocabulary file.
merges_file (`str`):
Path to the merges file.
errors (`str`, *optional*, defaults to `"replace"`):
Paradigm to follow when decoding bytes to UTF-8. See
[bytes.decode](https://docs.python.org/3/library/stdtypes.html#bytes.decode) for more information.
unk_token (`str`, *optional*, defaults to `<|endoftext|>`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
bos_token (`str`, *optional*, defaults to `<|endoftext|>`):
The beginning of sequence token.
eos_token (`str`, *optional*, defaults to `<|endoftext|>`):
The end of sequence token.
add_prefix_space (`bool`, *optional*, defaults to `False`):
Whether or not to add an initial space to the input. This allows to treat the leading word just as any
other word. (Bloom tokenizer detect beginning of words by the preceding space).
trim_offsets (`bool`, *optional*, defaults to `True`):
Whether or not the post-processing step should trim offsets to avoid including whitespaces.
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
model_input_names = ["input_ids", "attention_mask"]
slow_tokenizer_class = None
# No `max_model_input_sizes` as BLOOM uses ALiBi positional embeddings
def __init__(
self,
vocab_file=None,
merges_file=None,
tokenizer_file=None,
unk_token="<unk>",
bos_token="<s>",
eos_token="</s>",
pad_token="<pad>",
add_prefix_space=False,
clean_up_tokenization_spaces=False,
**kwargs,
):
super().__init__(
vocab_file,
merges_file,
tokenizer_file=tokenizer_file,
unk_token=unk_token,
bos_token=bos_token,
eos_token=eos_token,
pad_token=pad_token,
add_prefix_space=add_prefix_space,
clean_up_tokenization_spaces=clean_up_tokenization_spaces,
**kwargs,
)
# TODO @ArthurZucker this can only work one way for now, to update later-on. Tests should also properly
# check this as they were green before.
pre_tok_state = pickle.dumps(self.backend_tokenizer.pre_tokenizer)
decoder_state = pickle.dumps(self.backend_tokenizer.decoder)
if add_prefix_space:
pre_tok_state = pre_tok_state.replace(b'"add_prefix_space":false', b'"add_prefix_space": true')
decoder_state = decoder_state.replace(b'"add_prefix_space":false', b'"add_prefix_space": true')
self.backend_tokenizer.pre_tokenizer = pickle.loads(pre_tok_state)
self.backend_tokenizer.decoder = pickle.loads(decoder_state)
self.add_prefix_space = add_prefix_space
def _batch_encode_plus(self, *args, **kwargs) -> BatchEncoding:
is_split_into_words = kwargs.get("is_split_into_words", False)
if not (self.add_prefix_space or not is_split_into_words):
raise Exception(
f"You need to instantiate {self.__class__.__name__} with add_prefix_space=True to use it with"
" pretokenized inputs."
)
return super()._batch_encode_plus(*args, **kwargs)
def _encode_plus(self, *args, **kwargs) -> BatchEncoding:
is_split_into_words = kwargs.get("is_split_into_words", False)
if not (self.add_prefix_space or not is_split_into_words):
raise Exception(
f"You need to instantiate {self.__class__.__name__} with add_prefix_space=True to use it with"
" pretokenized inputs."
)
return super()._encode_plus(*args, **kwargs)
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
files = self._tokenizer.model.save(save_directory, name=filename_prefix)
return tuple(files)
@property
# Copied from transformers.models.gpt2.tokenization_gpt2.GPT2Tokenizer.default_chat_template
def default_chat_template(self):
"""
A simple chat template that ignores role information and just concatenates messages with EOS tokens.
"""
logger.warning_once(
"\nNo chat template is defined for this tokenizer - using the default template "
f"for the {self.__class__.__name__} class. If the default is not appropriate for "
"your model, please set `tokenizer.chat_template` to an appropriate template. "
"See https://huggingface.co/docs/transformers/main/chat_templating for more information.\n"
)
return "{% for message in messages %}" "{{ message.content }}{{ eos_token }}" "{% endfor %}"
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/pop2piano/convert_pop2piano_weights_to_hf.py | # Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" File for loading the Pop2Piano model weights from the official repository and to show how tokenizer vocab was
constructed"""
import json
import torch
from transformers import Pop2PianoConfig, Pop2PianoForConditionalGeneration
########################## MODEL WEIGHTS ##########################
# This weights were downloaded from the official pop2piano repository
# https://huggingface.co/sweetcocoa/pop2piano/blob/main/model-1999-val_0.67311615.ckpt
official_weights = torch.load("./model-1999-val_0.67311615.ckpt")
state_dict = {}
# load the config and init the model
cfg = Pop2PianoConfig.from_pretrained("sweetcocoa/pop2piano")
model = Pop2PianoForConditionalGeneration(cfg)
# load relative attention bias
state_dict["encoder.block.0.layer.0.SelfAttention.relative_attention_bias.weight"] = official_weights["state_dict"][
"transformer.encoder.block.0.layer.0.SelfAttention.relative_attention_bias.weight"
]
state_dict["decoder.block.0.layer.0.SelfAttention.relative_attention_bias.weight"] = official_weights["state_dict"][
"transformer.decoder.block.0.layer.0.SelfAttention.relative_attention_bias.weight"
]
# load embed tokens and final layer norm for both encoder and decoder
state_dict["encoder.embed_tokens.weight"] = official_weights["state_dict"]["transformer.encoder.embed_tokens.weight"]
state_dict["decoder.embed_tokens.weight"] = official_weights["state_dict"]["transformer.decoder.embed_tokens.weight"]
state_dict["encoder.final_layer_norm.weight"] = official_weights["state_dict"][
"transformer.encoder.final_layer_norm.weight"
]
state_dict["decoder.final_layer_norm.weight"] = official_weights["state_dict"][
"transformer.decoder.final_layer_norm.weight"
]
# load lm_head, mel_conditioner.emb and shared
state_dict["lm_head.weight"] = official_weights["state_dict"]["transformer.lm_head.weight"]
state_dict["mel_conditioner.embedding.weight"] = official_weights["state_dict"]["mel_conditioner.embedding.weight"]
state_dict["shared.weight"] = official_weights["state_dict"]["transformer.shared.weight"]
# load each encoder blocks
for i in range(cfg.num_layers):
# layer 0
state_dict[f"encoder.block.{i}.layer.0.SelfAttention.q.weight"] = official_weights["state_dict"][
f"transformer.encoder.block.{i}.layer.0.SelfAttention.q.weight"
]
state_dict[f"encoder.block.{i}.layer.0.SelfAttention.k.weight"] = official_weights["state_dict"][
f"transformer.encoder.block.{i}.layer.0.SelfAttention.k.weight"
]
state_dict[f"encoder.block.{i}.layer.0.SelfAttention.v.weight"] = official_weights["state_dict"][
f"transformer.encoder.block.{i}.layer.0.SelfAttention.v.weight"
]
state_dict[f"encoder.block.{i}.layer.0.SelfAttention.o.weight"] = official_weights["state_dict"][
f"transformer.encoder.block.{i}.layer.0.SelfAttention.o.weight"
]
state_dict[f"encoder.block.{i}.layer.0.layer_norm.weight"] = official_weights["state_dict"][
f"transformer.encoder.block.{i}.layer.0.layer_norm.weight"
]
# layer 1
state_dict[f"encoder.block.{i}.layer.1.DenseReluDense.wi_0.weight"] = official_weights["state_dict"][
f"transformer.encoder.block.{i}.layer.1.DenseReluDense.wi_0.weight"
]
state_dict[f"encoder.block.{i}.layer.1.DenseReluDense.wi_1.weight"] = official_weights["state_dict"][
f"transformer.encoder.block.{i}.layer.1.DenseReluDense.wi_1.weight"
]
state_dict[f"encoder.block.{i}.layer.1.DenseReluDense.wo.weight"] = official_weights["state_dict"][
f"transformer.encoder.block.{i}.layer.1.DenseReluDense.wo.weight"
]
state_dict[f"encoder.block.{i}.layer.1.layer_norm.weight"] = official_weights["state_dict"][
f"transformer.encoder.block.{i}.layer.1.layer_norm.weight"
]
# load each decoder blocks
for i in range(6):
# layer 0
state_dict[f"decoder.block.{i}.layer.0.SelfAttention.q.weight"] = official_weights["state_dict"][
f"transformer.decoder.block.{i}.layer.0.SelfAttention.q.weight"
]
state_dict[f"decoder.block.{i}.layer.0.SelfAttention.k.weight"] = official_weights["state_dict"][
f"transformer.decoder.block.{i}.layer.0.SelfAttention.k.weight"
]
state_dict[f"decoder.block.{i}.layer.0.SelfAttention.v.weight"] = official_weights["state_dict"][
f"transformer.decoder.block.{i}.layer.0.SelfAttention.v.weight"
]
state_dict[f"decoder.block.{i}.layer.0.SelfAttention.o.weight"] = official_weights["state_dict"][
f"transformer.decoder.block.{i}.layer.0.SelfAttention.o.weight"
]
state_dict[f"decoder.block.{i}.layer.0.layer_norm.weight"] = official_weights["state_dict"][
f"transformer.decoder.block.{i}.layer.0.layer_norm.weight"
]
# layer 1
state_dict[f"decoder.block.{i}.layer.1.EncDecAttention.q.weight"] = official_weights["state_dict"][
f"transformer.decoder.block.{i}.layer.1.EncDecAttention.q.weight"
]
state_dict[f"decoder.block.{i}.layer.1.EncDecAttention.k.weight"] = official_weights["state_dict"][
f"transformer.decoder.block.{i}.layer.1.EncDecAttention.k.weight"
]
state_dict[f"decoder.block.{i}.layer.1.EncDecAttention.v.weight"] = official_weights["state_dict"][
f"transformer.decoder.block.{i}.layer.1.EncDecAttention.v.weight"
]
state_dict[f"decoder.block.{i}.layer.1.EncDecAttention.o.weight"] = official_weights["state_dict"][
f"transformer.decoder.block.{i}.layer.1.EncDecAttention.o.weight"
]
state_dict[f"decoder.block.{i}.layer.1.layer_norm.weight"] = official_weights["state_dict"][
f"transformer.decoder.block.{i}.layer.1.layer_norm.weight"
]
# layer 2
state_dict[f"decoder.block.{i}.layer.2.DenseReluDense.wi_0.weight"] = official_weights["state_dict"][
f"transformer.decoder.block.{i}.layer.2.DenseReluDense.wi_0.weight"
]
state_dict[f"decoder.block.{i}.layer.2.DenseReluDense.wi_1.weight"] = official_weights["state_dict"][
f"transformer.decoder.block.{i}.layer.2.DenseReluDense.wi_1.weight"
]
state_dict[f"decoder.block.{i}.layer.2.DenseReluDense.wo.weight"] = official_weights["state_dict"][
f"transformer.decoder.block.{i}.layer.2.DenseReluDense.wo.weight"
]
state_dict[f"decoder.block.{i}.layer.2.layer_norm.weight"] = official_weights["state_dict"][
f"transformer.decoder.block.{i}.layer.2.layer_norm.weight"
]
model.load_state_dict(state_dict, strict=True)
# save the weights
torch.save(state_dict, "./pytorch_model.bin")
########################## TOKENIZER ##########################
# the tokenize and detokenize methods are taken from the official implementation
# link : https://github.com/sweetcocoa/pop2piano/blob/fac11e8dcfc73487513f4588e8d0c22a22f2fdc5/midi_tokenizer.py#L34
def tokenize(idx, token_type, n_special=4, n_note=128, n_velocity=2):
if token_type == "TOKEN_TIME":
return n_special + n_note + n_velocity + idx
elif token_type == "TOKEN_VELOCITY":
return n_special + n_note + idx
elif token_type == "TOKEN_NOTE":
return n_special + idx
elif token_type == "TOKEN_SPECIAL":
return idx
else:
return -1
# link : https://github.com/sweetcocoa/pop2piano/blob/fac11e8dcfc73487513f4588e8d0c22a22f2fdc5/midi_tokenizer.py#L48
def detokenize(idx, n_special=4, n_note=128, n_velocity=2, time_idx_offset=0):
if idx >= n_special + n_note + n_velocity:
return "TOKEN_TIME", (idx - (n_special + n_note + n_velocity)) + time_idx_offset
elif idx >= n_special + n_note:
return "TOKEN_VELOCITY", idx - (n_special + n_note)
elif idx >= n_special:
return "TOKEN_NOTE", idx - n_special
else:
return "TOKEN_SPECIAL", idx
# crate the decoder and then the encoder of the tokenizer
decoder = {}
for i in range(cfg.vocab_size):
decoder.update({i: f"{detokenize(i)[1]}_{detokenize(i)[0]}"})
encoder = {v: k for k, v in decoder.items()}
# save the vocab
with open("./vocab.json", "w") as file:
file.write(json.dumps(encoder))
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/pop2piano/feature_extraction_pop2piano.py | # coding=utf-8
# Copyright 2023 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Feature extractor class for Pop2Piano"""
import warnings
from typing import List, Optional, Union
import numpy
import numpy as np
from ...audio_utils import mel_filter_bank, spectrogram
from ...feature_extraction_sequence_utils import SequenceFeatureExtractor
from ...feature_extraction_utils import BatchFeature
from ...utils import (
TensorType,
is_essentia_available,
is_librosa_available,
is_scipy_available,
logging,
requires_backends,
)
if is_essentia_available():
import essentia
import essentia.standard
if is_librosa_available():
import librosa
if is_scipy_available():
import scipy
logger = logging.get_logger(__name__)
class Pop2PianoFeatureExtractor(SequenceFeatureExtractor):
r"""
Constructs a Pop2Piano feature extractor.
This feature extractor inherits from [`~feature_extraction_sequence_utils.SequenceFeatureExtractor`] which contains
most of the main methods. Users should refer to this superclass for more information regarding those methods.
This class extracts rhythm and preprocesses the audio before it is passed to the model. First the audio is passed
to `RhythmExtractor2013` algorithm which extracts the beat_times, beat positions and estimates their confidence as
well as tempo in bpm, then beat_times is interpolated and to get beatsteps. Later we calculate
extrapolated_beatsteps from it to be used in tokenizer. On the other hand audio is resampled to self.sampling_rate
and preprocessed and then log mel spectogram is computed from that to be used in our transformer model.
Args:
sampling_rate (`int`, *optional*, defaults to 22050):
Target Sampling rate of audio signal. It's the sampling rate that we forward to the model.
padding_value (`int`, *optional*, defaults to 0):
Padding value used to pad the audio. Should correspond to silences.
window_size (`int`, *optional*, defaults to 4096):
Length of the window in samples to which the Fourier transform is applied.
hop_length (`int`, *optional*, defaults to 1024):
Step size between each window of the waveform, in samples.
min_frequency (`float`, *optional*, defaults to 10.0):
Lowest frequency that will be used in the log-mel spectrogram.
feature_size (`int`, *optional*, defaults to 512):
The feature dimension of the extracted features.
num_bars (`int`, *optional*, defaults to 2):
Determines interval between each sequence.
"""
model_input_names = ["input_features", "beatsteps", "extrapolated_beatstep"]
def __init__(
self,
sampling_rate: int = 22050,
padding_value: int = 0,
window_size: int = 4096,
hop_length: int = 1024,
min_frequency: float = 10.0,
feature_size: int = 512,
num_bars: int = 2,
**kwargs,
):
super().__init__(
feature_size=feature_size,
sampling_rate=sampling_rate,
padding_value=padding_value,
**kwargs,
)
self.sampling_rate = sampling_rate
self.padding_value = padding_value
self.window_size = window_size
self.hop_length = hop_length
self.min_frequency = min_frequency
self.feature_size = feature_size
self.num_bars = num_bars
self.mel_filters = mel_filter_bank(
num_frequency_bins=(self.window_size // 2) + 1,
num_mel_filters=self.feature_size,
min_frequency=self.min_frequency,
max_frequency=float(self.sampling_rate // 2),
sampling_rate=self.sampling_rate,
norm=None,
mel_scale="htk",
)
def mel_spectrogram(self, sequence: np.ndarray):
"""
Generates MelSpectrogram.
Args:
sequence (`numpy.ndarray`):
The sequence of which the mel-spectrogram will be computed.
"""
mel_specs = []
for seq in sequence:
window = np.hanning(self.window_size + 1)[:-1]
mel_specs.append(
spectrogram(
waveform=seq,
window=window,
frame_length=self.window_size,
hop_length=self.hop_length,
power=2.0,
mel_filters=self.mel_filters,
)
)
mel_specs = np.array(mel_specs)
return mel_specs
def extract_rhythm(self, audio: np.ndarray):
"""
This algorithm(`RhythmExtractor2013`) extracts the beat positions and estimates their confidence as well as
tempo in bpm for an audio signal. For more information please visit
https://essentia.upf.edu/reference/std_RhythmExtractor2013.html .
Args:
audio(`numpy.ndarray`):
raw audio waveform which is passed to the Rhythm Extractor.
"""
requires_backends(self, ["essentia"])
essentia_tracker = essentia.standard.RhythmExtractor2013(method="multifeature")
bpm, beat_times, confidence, estimates, essentia_beat_intervals = essentia_tracker(audio)
return bpm, beat_times, confidence, estimates, essentia_beat_intervals
def interpolate_beat_times(
self, beat_times: numpy.ndarray, steps_per_beat: numpy.ndarray, n_extend: numpy.ndarray
):
"""
This method takes beat_times and then interpolates that using `scipy.interpolate.interp1d` and the output is
then used to convert raw audio to log-mel-spectrogram.
Args:
beat_times (`numpy.ndarray`):
beat_times is passed into `scipy.interpolate.interp1d` for processing.
steps_per_beat (`int`):
used as an parameter to control the interpolation.
n_extend (`int`):
used as an parameter to control the interpolation.
"""
requires_backends(self, ["scipy"])
beat_times_function = scipy.interpolate.interp1d(
np.arange(beat_times.size),
beat_times,
bounds_error=False,
fill_value="extrapolate",
)
ext_beats = beat_times_function(
np.linspace(0, beat_times.size + n_extend - 1, beat_times.size * steps_per_beat + n_extend)
)
return ext_beats
def preprocess_mel(self, audio: np.ndarray, beatstep: np.ndarray):
"""
Preprocessing for log-mel-spectrogram
Args:
audio (`numpy.ndarray` of shape `(audio_length, )` ):
Raw audio waveform to be processed.
beatstep (`numpy.ndarray`):
Interpolated values of the raw audio. If beatstep[0] is greater than 0.0, then it will be shifted by
the value at beatstep[0].
"""
if audio is not None and len(audio.shape) != 1:
raise ValueError(
f"Expected `audio` to be a single channel audio input of shape `(n, )` but found shape {audio.shape}."
)
if beatstep[0] > 0.0:
beatstep = beatstep - beatstep[0]
num_steps = self.num_bars * 4
num_target_steps = len(beatstep)
extrapolated_beatstep = self.interpolate_beat_times(
beat_times=beatstep, steps_per_beat=1, n_extend=(self.num_bars + 1) * 4 + 1
)
sample_indices = []
max_feature_length = 0
for i in range(0, num_target_steps, num_steps):
start_idx = i
end_idx = min(i + num_steps, num_target_steps)
start_sample = int(extrapolated_beatstep[start_idx] * self.sampling_rate)
end_sample = int(extrapolated_beatstep[end_idx] * self.sampling_rate)
sample_indices.append((start_sample, end_sample))
max_feature_length = max(max_feature_length, end_sample - start_sample)
padded_batch = []
for start_sample, end_sample in sample_indices:
feature = audio[start_sample:end_sample]
padded_feature = np.pad(
feature,
((0, max_feature_length - feature.shape[0]),),
"constant",
constant_values=0,
)
padded_batch.append(padded_feature)
padded_batch = np.asarray(padded_batch)
return padded_batch, extrapolated_beatstep
def _pad(self, features: np.ndarray, add_zero_line=True):
features_shapes = [each_feature.shape for each_feature in features]
attention_masks, padded_features = [], []
for i, each_feature in enumerate(features):
# To pad "input_features".
if len(each_feature.shape) == 3:
features_pad_value = max([*zip(*features_shapes)][1]) - features_shapes[i][1]
attention_mask = np.ones(features_shapes[i][:2], dtype=np.int64)
feature_padding = ((0, 0), (0, features_pad_value), (0, 0))
attention_mask_padding = (feature_padding[0], feature_padding[1])
# To pad "beatsteps" and "extrapolated_beatstep".
else:
each_feature = each_feature.reshape(1, -1)
features_pad_value = max([*zip(*features_shapes)][0]) - features_shapes[i][0]
attention_mask = np.ones(features_shapes[i], dtype=np.int64).reshape(1, -1)
feature_padding = attention_mask_padding = ((0, 0), (0, features_pad_value))
each_padded_feature = np.pad(each_feature, feature_padding, "constant", constant_values=self.padding_value)
attention_mask = np.pad(
attention_mask, attention_mask_padding, "constant", constant_values=self.padding_value
)
if add_zero_line:
# if it is batched then we seperate each examples using zero array
zero_array_len = max([*zip(*features_shapes)][1])
# we concatenate the zero array line here
each_padded_feature = np.concatenate(
[each_padded_feature, np.zeros([1, zero_array_len, self.feature_size])], axis=0
)
attention_mask = np.concatenate(
[attention_mask, np.zeros([1, zero_array_len], dtype=attention_mask.dtype)], axis=0
)
padded_features.append(each_padded_feature)
attention_masks.append(attention_mask)
padded_features = np.concatenate(padded_features, axis=0).astype(np.float32)
attention_masks = np.concatenate(attention_masks, axis=0).astype(np.int64)
return padded_features, attention_masks
def pad(
self,
inputs: BatchFeature,
is_batched: bool,
return_attention_mask: bool,
return_tensors: Optional[Union[str, TensorType]] = None,
):
"""
Pads the inputs to same length and returns attention_mask.
Args:
inputs (`BatchFeature`):
Processed audio features.
is_batched (`bool`):
Whether inputs are batched or not.
return_attention_mask (`bool`):
Whether to return attention mask or not.
return_tensors (`str` or [`~utils.TensorType`], *optional*):
If set, will return tensors instead of list of python integers. Acceptable values are:
- `'pt'`: Return PyTorch `torch.Tensor` objects.
- `'np'`: Return Numpy `np.ndarray` objects.
If nothing is specified, it will return list of `np.ndarray` arrays.
Return:
`BatchFeature` with attention_mask, attention_mask_beatsteps and attention_mask_extrapolated_beatstep added
to it:
- **attention_mask** numpy.ndarray of shape `(batch_size, max_input_features_seq_length)` --
Example :
1, 1, 1, 0, 0 (audio 1, also here it is padded to max length of 5 thats why there are 2 zeros at
the end indicating they are padded)
0, 0, 0, 0, 0 (zero pad to seperate audio 1 and 2)
1, 1, 1, 1, 1 (audio 2)
0, 0, 0, 0, 0 (zero pad to seperate audio 2 and 3)
1, 1, 1, 1, 1 (audio 3)
- **attention_mask_beatsteps** numpy.ndarray of shape `(batch_size, max_beatsteps_seq_length)`
- **attention_mask_extrapolated_beatstep** numpy.ndarray of shape `(batch_size,
max_extrapolated_beatstep_seq_length)`
"""
processed_features_dict = {}
for feature_name, feature_value in inputs.items():
if feature_name == "input_features":
padded_feature_values, attention_mask = self._pad(feature_value, add_zero_line=True)
processed_features_dict[feature_name] = padded_feature_values
if return_attention_mask:
processed_features_dict["attention_mask"] = attention_mask
else:
padded_feature_values, attention_mask = self._pad(feature_value, add_zero_line=False)
processed_features_dict[feature_name] = padded_feature_values
if return_attention_mask:
processed_features_dict[f"attention_mask_{feature_name}"] = attention_mask
# If we are processing only one example, we should remove the zero array line since we don't need it to
# seperate examples from each other.
if not is_batched and not return_attention_mask:
processed_features_dict["input_features"] = processed_features_dict["input_features"][:-1, ...]
outputs = BatchFeature(processed_features_dict, tensor_type=return_tensors)
return outputs
def __call__(
self,
audio: Union[np.ndarray, List[float], List[np.ndarray], List[List[float]]],
sampling_rate: Union[int, List[int]],
steps_per_beat: int = 2,
resample: Optional[bool] = True,
return_attention_mask: Optional[bool] = False,
return_tensors: Optional[Union[str, TensorType]] = None,
**kwargs,
) -> BatchFeature:
"""
Main method to featurize and prepare for the model.
Args:
audio (`np.ndarray`, `List`):
The audio or batch of audio to be processed. Each audio can be a numpy array, a list of float values, a
list of numpy arrays or a list of list of float values.
sampling_rate (`int`):
The sampling rate at which the `audio` input was sampled. It is strongly recommended to pass
`sampling_rate` at the forward call to prevent silent errors.
steps_per_beat (`int`, *optional*, defaults to 2):
This is used in interpolating `beat_times`.
resample (`bool`, *optional*, defaults to `True`):
Determines whether to resample the audio to `sampling_rate` or not before processing. Must be True
during inference.
return_attention_mask (`bool` *optional*, defaults to `False`):
Denotes if attention_mask for input_features, beatsteps and extrapolated_beatstep will be given as
output or not. Automatically set to True for batched inputs.
return_tensors (`str` or [`~utils.TensorType`], *optional*):
If set, will return tensors instead of list of python integers. Acceptable values are:
- `'pt'`: Return PyTorch `torch.Tensor` objects.
- `'np'`: Return Numpy `np.ndarray` objects.
If nothing is specified, it will return list of `np.ndarray` arrays.
"""
requires_backends(self, ["librosa"])
is_batched = bool(isinstance(audio, (list, tuple)) and isinstance(audio[0], (np.ndarray, tuple, list)))
if is_batched:
# This enables the user to process files of different sampling_rate at same time
if not isinstance(sampling_rate, list):
raise ValueError(
"Please give sampling_rate of each audio separately when you are passing multiple raw_audios at the same time. "
f"Received {sampling_rate}, expected [audio_1_sr, ..., audio_n_sr]."
)
return_attention_mask = True if return_attention_mask is None else return_attention_mask
else:
audio = [audio]
sampling_rate = [sampling_rate]
return_attention_mask = False if return_attention_mask is None else return_attention_mask
batch_input_features, batch_beatsteps, batch_ext_beatstep = [], [], []
for single_raw_audio, single_sampling_rate in zip(audio, sampling_rate):
bpm, beat_times, confidence, estimates, essentia_beat_intervals = self.extract_rhythm(
audio=single_raw_audio
)
beatsteps = self.interpolate_beat_times(beat_times=beat_times, steps_per_beat=steps_per_beat, n_extend=1)
if self.sampling_rate != single_sampling_rate and self.sampling_rate is not None:
if resample:
# Change sampling_rate to self.sampling_rate
single_raw_audio = librosa.core.resample(
single_raw_audio,
orig_sr=single_sampling_rate,
target_sr=self.sampling_rate,
res_type="kaiser_best",
)
else:
warnings.warn(
f"The sampling_rate of the provided audio is different from the target sampling_rate "
f"of the Feature Extractor, {self.sampling_rate} vs {single_sampling_rate}. "
f"In these cases it is recommended to use `resample=True` in the `__call__` method to "
f"get the optimal behaviour."
)
single_sampling_rate = self.sampling_rate
start_sample = int(beatsteps[0] * single_sampling_rate)
end_sample = int(beatsteps[-1] * single_sampling_rate)
input_features, extrapolated_beatstep = self.preprocess_mel(
single_raw_audio[start_sample:end_sample], beatsteps - beatsteps[0]
)
mel_specs = self.mel_spectrogram(input_features.astype(np.float32))
# apply np.log to get log mel-spectrograms
log_mel_specs = np.log(np.clip(mel_specs, a_min=1e-6, a_max=None))
input_features = np.transpose(log_mel_specs, (0, -1, -2))
batch_input_features.append(input_features)
batch_beatsteps.append(beatsteps)
batch_ext_beatstep.append(extrapolated_beatstep)
output = BatchFeature(
{
"input_features": batch_input_features,
"beatsteps": batch_beatsteps,
"extrapolated_beatstep": batch_ext_beatstep,
}
)
output = self.pad(
output,
is_batched=is_batched,
return_attention_mask=return_attention_mask,
return_tensors=return_tensors,
)
return output
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/pop2piano/processing_pop2piano.py | # coding=utf-8
# Copyright 2023 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Processor class for Pop2Piano."""
import os
from typing import List, Optional, Union
import numpy as np
from ...feature_extraction_utils import BatchFeature
from ...processing_utils import ProcessorMixin
from ...tokenization_utils import BatchEncoding, PaddingStrategy, TruncationStrategy
from ...utils import TensorType
class Pop2PianoProcessor(ProcessorMixin):
r"""
Constructs an Pop2Piano processor which wraps a Pop2Piano Feature Extractor and Pop2Piano Tokenizer into a single
processor.
[`Pop2PianoProcessor`] offers all the functionalities of [`Pop2PianoFeatureExtractor`] and [`Pop2PianoTokenizer`].
See the docstring of [`~Pop2PianoProcessor.__call__`] and [`~Pop2PianoProcessor.decode`] for more information.
Args:
feature_extractor (`Pop2PianoFeatureExtractor`):
An instance of [`Pop2PianoFeatureExtractor`]. The feature extractor is a required input.
tokenizer (`Pop2PianoTokenizer`):
An instance of ['Pop2PianoTokenizer`]. The tokenizer is a required input.
"""
attributes = ["feature_extractor", "tokenizer"]
feature_extractor_class = "Pop2PianoFeatureExtractor"
tokenizer_class = "Pop2PianoTokenizer"
def __init__(self, feature_extractor, tokenizer):
super().__init__(feature_extractor, tokenizer)
def __call__(
self,
audio: Union[np.ndarray, List[float], List[np.ndarray]] = None,
sampling_rate: Union[int, List[int]] = None,
steps_per_beat: int = 2,
resample: Optional[bool] = True,
notes: Union[List, TensorType] = None,
padding: Union[bool, str, PaddingStrategy] = False,
truncation: Union[bool, str, TruncationStrategy] = None,
max_length: Optional[int] = None,
pad_to_multiple_of: Optional[int] = None,
verbose: bool = True,
**kwargs,
) -> Union[BatchFeature, BatchEncoding]:
"""
This method uses [`Pop2PianoFeatureExtractor.__call__`] method to prepare log-mel-spectrograms for the model,
and [`Pop2PianoTokenizer.__call__`] to prepare token_ids from notes.
Please refer to the docstring of the above two methods for more information.
"""
# Since Feature Extractor needs both audio and sampling_rate and tokenizer needs both token_ids and
# feature_extractor_output, we must check for both.
if (audio is None and sampling_rate is None) and (notes is None):
raise ValueError(
"You have to specify at least audios and sampling_rate in order to use feature extractor or "
"notes to use the tokenizer part."
)
if audio is not None and sampling_rate is not None:
inputs = self.feature_extractor(
audio=audio,
sampling_rate=sampling_rate,
steps_per_beat=steps_per_beat,
resample=resample,
**kwargs,
)
if notes is not None:
encoded_token_ids = self.tokenizer(
notes=notes,
padding=padding,
truncation=truncation,
max_length=max_length,
pad_to_multiple_of=pad_to_multiple_of,
verbose=verbose,
**kwargs,
)
if notes is None:
return inputs
elif audio is None or sampling_rate is None:
return encoded_token_ids
else:
inputs["token_ids"] = encoded_token_ids["token_ids"]
return inputs
def batch_decode(
self,
token_ids,
feature_extractor_output: BatchFeature,
return_midi: bool = True,
) -> BatchEncoding:
"""
This method uses [`Pop2PianoTokenizer.batch_decode`] method to convert model generated token_ids to midi_notes.
Please refer to the docstring of the above two methods for more information.
"""
return self.tokenizer.batch_decode(
token_ids=token_ids, feature_extractor_output=feature_extractor_output, return_midi=return_midi
)
@property
def model_input_names(self):
tokenizer_input_names = self.tokenizer.model_input_names
feature_extractor_input_names = self.feature_extractor.model_input_names
return list(dict.fromkeys(tokenizer_input_names + feature_extractor_input_names))
def save_pretrained(self, save_directory, **kwargs):
if os.path.isfile(save_directory):
raise ValueError(f"Provided path ({save_directory}) should be a directory, not a file")
os.makedirs(save_directory, exist_ok=True)
return super().save_pretrained(save_directory, **kwargs)
@classmethod
def from_pretrained(cls, pretrained_model_name_or_path, **kwargs):
args = cls._get_arguments_from_pretrained(pretrained_model_name_or_path, **kwargs)
return cls(*args)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/pop2piano/modeling_pop2piano.py | # coding=utf-8
# Copyright 2023 The Pop2Piano Authors and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch Pop2Piano model."""
import copy
import math
from typing import Optional, Tuple, Union
import torch
from torch import nn
from torch.nn import CrossEntropyLoss
from transformers.generation import GenerationConfig
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPastAndCrossAttentions,
Seq2SeqLMOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import ALL_LAYERNORM_LAYERS, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_torch_fx_proxy,
logging,
replace_return_docstrings,
)
from .configuration_pop2piano import Pop2PianoConfig
logger = logging.get_logger(__name__)
_load_pop2piano_layer_norm = True
try:
from apex.normalization import FusedRMSNorm
_load_pop2piano_layer_norm = False
logger.info("Discovered apex.normalization.FusedRMSNorm - will use it instead of Pop2PianoLayerNorm")
except ImportError:
# using the normal Pop2PianoLayerNorm
pass
except Exception:
logger.warning("Discovered apex but it failed to load, falling back to Pop2PianoLayerNorm")
pass
_CONFIG_FOR_DOC = "Pop2PianoConfig"
_CHECKPOINT_FOR_DOC = "sweetcocoa/pop2piano"
POP2PIANO_PRETRAINED_MODEL_ARCHIVE_LIST = [
"sweetcocoa/pop2piano",
# See all Pop2Piano models at https://huggingface.co/models?filter=pop2piano
]
POP2PIANO_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Pop2Piano is a model with relative position embeddings
so you should be able to pad the inputs on both the right and the left. Indices can be obtained using
[`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and [`PreTrainedTokenizer.__call__`] for detail.
[What are input IDs?](../glossary#input-ids) To know more on how to prepare `input_ids` for pretraining
take a look a [Pop2Pianp Training](./Pop2Piano#training).
attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
decoder_input_ids (`torch.LongTensor` of shape `(batch_size, target_sequence_length)`, *optional*):
Indices of decoder input sequence tokens in the vocabulary. Indices can be obtained using
[`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and [`PreTrainedTokenizer.__call__`] for details.
[What are decoder input IDs?](../glossary#decoder-input-ids) Pop2Piano uses the `pad_token_id` as the
starting token for `decoder_input_ids` generation. If `past_key_values` is used, optionally only the last
`decoder_input_ids` have to be input (see `past_key_values`). To know more on how to prepare
decoder_attention_mask (`torch.BoolTensor` of shape `(batch_size, target_sequence_length)`, *optional*):
Default behavior: generate a tensor that ignores pad tokens in `decoder_input_ids`. Causal mask will also
be used by default.
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules in the encoder. Mask values selected in `[0,
1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
decoder_head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules in the decoder. Mask values selected in `[0,
1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
cross_attn_head_mask (`torch.Tensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the cross-attention modules in the decoder. Mask values selected in
`[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
encoder_outputs (`tuple(tuple(torch.FloatTensor)`, *optional*):
Tuple consists of (`last_hidden_state`, `optional`: *hidden_states*, `optional`: *attentions*)
`last_hidden_state` of shape `(batch_size, sequence_length, hidden_size)` is a sequence of hidden states at
the output of the last layer of the encoder. Used in the cross-attention of the decoder.
past_key_values (`tuple(tuple(torch.FloatTensor))` of length `config.n_layers` with each tuple having 4 tensors of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
input_features (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Does the same task as `inputs_embeds`. If `inputs_embeds` is not present but `input_features` is present
then `input_features` will be considered as `inputs_embeds`.
decoder_inputs_embeds (`torch.FloatTensor` of shape `(batch_size, target_sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `decoder_input_ids` you can choose to directly pass an embedded
representation. If `past_key_values` is used, optionally only the last `decoder_inputs_embeds` have to be
input (see `past_key_values`). This is useful if you want more control over how to convert
`decoder_input_ids` indices into associated vectors than the model's internal embedding lookup matrix. If
`decoder_input_ids` and `decoder_inputs_embeds` are both unset, `decoder_inputs_embeds` takes the value of
`inputs_embeds`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
# Copied from transformers.models.t5.modeling_t5.T5LayerNorm with T5->Pop2Piano
class Pop2PianoLayerNorm(nn.Module):
def __init__(self, hidden_size, eps=1e-6):
"""
Construct a layernorm module in the Pop2Piano style. No bias and no subtraction of mean.
"""
super().__init__()
self.weight = nn.Parameter(torch.ones(hidden_size))
self.variance_epsilon = eps
def forward(self, hidden_states):
# Pop2Piano uses a layer_norm which only scales and doesn't shift, which is also known as Root Mean
# Square Layer Normalization https://arxiv.org/abs/1910.07467 thus varience is calculated
# w/o mean and there is no bias. Additionally we want to make sure that the accumulation for
# half-precision inputs is done in fp32
variance = hidden_states.to(torch.float32).pow(2).mean(-1, keepdim=True)
hidden_states = hidden_states * torch.rsqrt(variance + self.variance_epsilon)
# convert into half-precision if necessary
if self.weight.dtype in [torch.float16, torch.bfloat16]:
hidden_states = hidden_states.to(self.weight.dtype)
return self.weight * hidden_states
if not _load_pop2piano_layer_norm:
Pop2PianoLayerNorm = FusedRMSNorm # noqa
ALL_LAYERNORM_LAYERS.append(Pop2PianoLayerNorm)
# Copied from transformers.models.t5.modeling_t5.T5DenseActDense with T5->Pop2Piano,t5->pop2piano
class Pop2PianoDenseActDense(nn.Module):
def __init__(self, config: Pop2PianoConfig):
super().__init__()
self.wi = nn.Linear(config.d_model, config.d_ff, bias=False)
self.wo = nn.Linear(config.d_ff, config.d_model, bias=False)
self.dropout = nn.Dropout(config.dropout_rate)
self.act = ACT2FN[config.dense_act_fn]
def forward(self, hidden_states):
hidden_states = self.wi(hidden_states)
hidden_states = self.act(hidden_states)
hidden_states = self.dropout(hidden_states)
if (
isinstance(self.wo.weight, torch.Tensor)
and hidden_states.dtype != self.wo.weight.dtype
and self.wo.weight.dtype != torch.int8
):
hidden_states = hidden_states.to(self.wo.weight.dtype)
hidden_states = self.wo(hidden_states)
return hidden_states
# Copied from transformers.models.t5.modeling_t5.T5DenseGatedActDense with T5->Pop2Piano
class Pop2PianoDenseGatedActDense(nn.Module):
def __init__(self, config: Pop2PianoConfig):
super().__init__()
self.wi_0 = nn.Linear(config.d_model, config.d_ff, bias=False)
self.wi_1 = nn.Linear(config.d_model, config.d_ff, bias=False)
self.wo = nn.Linear(config.d_ff, config.d_model, bias=False)
self.dropout = nn.Dropout(config.dropout_rate)
self.act = ACT2FN[config.dense_act_fn]
def forward(self, hidden_states):
hidden_gelu = self.act(self.wi_0(hidden_states))
hidden_linear = self.wi_1(hidden_states)
hidden_states = hidden_gelu * hidden_linear
hidden_states = self.dropout(hidden_states)
# To make 8bit quantization work for google/flan-t5-xxl, self.wo is kept in float32.
# See https://github.com/huggingface/transformers/issues/20287
# we also make sure the weights are not in `int8` in case users will force `_keep_in_fp32_modules` to be `None``
if (
isinstance(self.wo.weight, torch.Tensor)
and hidden_states.dtype != self.wo.weight.dtype
and self.wo.weight.dtype != torch.int8
):
hidden_states = hidden_states.to(self.wo.weight.dtype)
hidden_states = self.wo(hidden_states)
return hidden_states
# Copied from transformers.models.t5.modeling_t5.T5LayerFF with T5->Pop2Piano
class Pop2PianoLayerFF(nn.Module):
def __init__(self, config: Pop2PianoConfig):
super().__init__()
if config.is_gated_act:
self.DenseReluDense = Pop2PianoDenseGatedActDense(config)
else:
self.DenseReluDense = Pop2PianoDenseActDense(config)
self.layer_norm = Pop2PianoLayerNorm(config.d_model, eps=config.layer_norm_epsilon)
self.dropout = nn.Dropout(config.dropout_rate)
def forward(self, hidden_states):
forwarded_states = self.layer_norm(hidden_states)
forwarded_states = self.DenseReluDense(forwarded_states)
hidden_states = hidden_states + self.dropout(forwarded_states)
return hidden_states
# Copied from transformers.models.t5.modeling_t5.T5Attention with T5->Pop2Piano,t5->pop2piano
class Pop2PianoAttention(nn.Module):
def __init__(self, config: Pop2PianoConfig, has_relative_attention_bias=False):
super().__init__()
self.is_decoder = config.is_decoder
self.has_relative_attention_bias = has_relative_attention_bias
self.relative_attention_num_buckets = config.relative_attention_num_buckets
self.relative_attention_max_distance = config.relative_attention_max_distance
self.d_model = config.d_model
self.key_value_proj_dim = config.d_kv
self.n_heads = config.num_heads
self.dropout = config.dropout_rate
self.inner_dim = self.n_heads * self.key_value_proj_dim
# Mesh TensorFlow initialization to avoid scaling before softmax
self.q = nn.Linear(self.d_model, self.inner_dim, bias=False)
self.k = nn.Linear(self.d_model, self.inner_dim, bias=False)
self.v = nn.Linear(self.d_model, self.inner_dim, bias=False)
self.o = nn.Linear(self.inner_dim, self.d_model, bias=False)
if self.has_relative_attention_bias:
self.relative_attention_bias = nn.Embedding(self.relative_attention_num_buckets, self.n_heads)
self.pruned_heads = set()
self.gradient_checkpointing = False
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.n_heads, self.key_value_proj_dim, self.pruned_heads
)
# Prune linear layers
self.q = prune_linear_layer(self.q, index)
self.k = prune_linear_layer(self.k, index)
self.v = prune_linear_layer(self.v, index)
self.o = prune_linear_layer(self.o, index, dim=1)
# Update hyper params
self.n_heads = self.n_heads - len(heads)
self.inner_dim = self.key_value_proj_dim * self.n_heads
self.pruned_heads = self.pruned_heads.union(heads)
@staticmethod
def _relative_position_bucket(relative_position, bidirectional=True, num_buckets=32, max_distance=128):
"""
Adapted from Mesh Tensorflow:
https://github.com/tensorflow/mesh/blob/0cb87fe07da627bf0b7e60475d59f95ed6b5be3d/mesh_tensorflow/transformer/transformer_layers.py#L593
Translate relative position to a bucket number for relative attention. The relative position is defined as
memory_position - query_position, i.e. the distance in tokens from the attending position to the attended-to
position. If bidirectional=False, then positive relative positions are invalid. We use smaller buckets for
small absolute relative_position and larger buckets for larger absolute relative_positions. All relative
positions >=max_distance map to the same bucket. All relative positions <=-max_distance map to the same bucket.
This should allow for more graceful generalization to longer sequences than the model has been trained on
Args:
relative_position: an int32 Tensor
bidirectional: a boolean - whether the attention is bidirectional
num_buckets: an integer
max_distance: an integer
Returns:
a Tensor with the same shape as relative_position, containing int32 values in the range [0, num_buckets)
"""
relative_buckets = 0
if bidirectional:
num_buckets //= 2
relative_buckets += (relative_position > 0).to(torch.long) * num_buckets
relative_position = torch.abs(relative_position)
else:
relative_position = -torch.min(relative_position, torch.zeros_like(relative_position))
# now relative_position is in the range [0, inf)
# half of the buckets are for exact increments in positions
max_exact = num_buckets // 2
is_small = relative_position < max_exact
# The other half of the buckets are for logarithmically bigger bins in positions up to max_distance
relative_position_if_large = max_exact + (
torch.log(relative_position.float() / max_exact)
/ math.log(max_distance / max_exact)
* (num_buckets - max_exact)
).to(torch.long)
relative_position_if_large = torch.min(
relative_position_if_large, torch.full_like(relative_position_if_large, num_buckets - 1)
)
relative_buckets += torch.where(is_small, relative_position, relative_position_if_large)
return relative_buckets
def compute_bias(self, query_length, key_length, device=None):
"""Compute binned relative position bias"""
if device is None:
device = self.relative_attention_bias.weight.device
context_position = torch.arange(query_length, dtype=torch.long, device=device)[:, None]
memory_position = torch.arange(key_length, dtype=torch.long, device=device)[None, :]
relative_position = memory_position - context_position # shape (query_length, key_length)
relative_position_bucket = self._relative_position_bucket(
relative_position, # shape (query_length, key_length)
bidirectional=(not self.is_decoder),
num_buckets=self.relative_attention_num_buckets,
max_distance=self.relative_attention_max_distance,
)
values = self.relative_attention_bias(relative_position_bucket) # shape (query_length, key_length, num_heads)
values = values.permute([2, 0, 1]).unsqueeze(0) # shape (1, num_heads, query_length, key_length)
return values
def forward(
self,
hidden_states,
mask=None,
key_value_states=None,
position_bias=None,
past_key_value=None,
layer_head_mask=None,
query_length=None,
use_cache=False,
output_attentions=False,
):
"""
Self-attention (if key_value_states is None) or attention over source sentence (provided by key_value_states).
"""
# Input is (batch_size, seq_length, dim)
# Mask is (batch_size, key_length) (non-causal) or (batch_size, key_length, key_length)
# past_key_value[0] is (batch_size, n_heads, q_len - 1, dim_per_head)
batch_size, seq_length = hidden_states.shape[:2]
real_seq_length = seq_length
if past_key_value is not None:
if len(past_key_value) != 2:
raise ValueError(
f"past_key_value should have 2 past states: keys and values. Got { len(past_key_value)} past states"
)
real_seq_length += past_key_value[0].shape[2] if query_length is None else query_length
key_length = real_seq_length if key_value_states is None else key_value_states.shape[1]
def shape(states):
"""projection"""
return states.view(batch_size, -1, self.n_heads, self.key_value_proj_dim).transpose(1, 2)
def unshape(states):
"""reshape"""
return states.transpose(1, 2).contiguous().view(batch_size, -1, self.inner_dim)
def project(hidden_states, proj_layer, key_value_states, past_key_value):
"""projects hidden states correctly to key/query states"""
if key_value_states is None:
# self-attn
# (batch_size, n_heads, seq_length, dim_per_head)
hidden_states = shape(proj_layer(hidden_states))
elif past_key_value is None:
# cross-attn
# (batch_size, n_heads, seq_length, dim_per_head)
hidden_states = shape(proj_layer(key_value_states))
if past_key_value is not None:
if key_value_states is None:
# self-attn
# (batch_size, n_heads, key_length, dim_per_head)
hidden_states = torch.cat([past_key_value, hidden_states], dim=2)
elif past_key_value.shape[2] != key_value_states.shape[1]:
# checking that the `sequence_length` of the `past_key_value` is the same as
# the provided `key_value_states` to support prefix tuning
# cross-attn
# (batch_size, n_heads, seq_length, dim_per_head)
hidden_states = shape(proj_layer(key_value_states))
else:
# cross-attn
hidden_states = past_key_value
return hidden_states
# get query states
query_states = shape(self.q(hidden_states)) # (batch_size, n_heads, seq_length, dim_per_head)
# get key/value states
key_states = project(
hidden_states, self.k, key_value_states, past_key_value[0] if past_key_value is not None else None
)
value_states = project(
hidden_states, self.v, key_value_states, past_key_value[1] if past_key_value is not None else None
)
# compute scores
scores = torch.matmul(
query_states, key_states.transpose(3, 2)
) # equivalent of torch.einsum("bnqd,bnkd->bnqk", query_states, key_states), compatible with onnx op>9
if position_bias is None:
if not self.has_relative_attention_bias:
position_bias = torch.zeros(
(1, self.n_heads, real_seq_length, key_length), device=scores.device, dtype=scores.dtype
)
if self.gradient_checkpointing and self.training:
position_bias.requires_grad = True
else:
position_bias = self.compute_bias(real_seq_length, key_length, device=scores.device)
# if key and values are already calculated
# we want only the last query position bias
if past_key_value is not None:
position_bias = position_bias[:, :, -hidden_states.size(1) :, :]
if mask is not None:
position_bias = position_bias + mask # (batch_size, n_heads, seq_length, key_length)
if self.pruned_heads:
mask = torch.ones(position_bias.shape[1])
mask[list(self.pruned_heads)] = 0
position_bias_masked = position_bias[:, mask.bool()]
else:
position_bias_masked = position_bias
scores += position_bias_masked
attn_weights = nn.functional.softmax(scores.float(), dim=-1).type_as(
scores
) # (batch_size, n_heads, seq_length, key_length)
attn_weights = nn.functional.dropout(
attn_weights, p=self.dropout, training=self.training
) # (batch_size, n_heads, seq_length, key_length)
# Mask heads if we want to
if layer_head_mask is not None:
attn_weights = attn_weights * layer_head_mask
attn_output = unshape(torch.matmul(attn_weights, value_states)) # (batch_size, seq_length, dim)
attn_output = self.o(attn_output)
present_key_value_state = (key_states, value_states) if (self.is_decoder and use_cache) else None
outputs = (attn_output,) + (present_key_value_state,) + (position_bias,)
if output_attentions:
outputs = outputs + (attn_weights,)
return outputs
# Copied from transformers.models.t5.modeling_t5.T5LayerSelfAttention with T5->Pop2Piano,t5->pop2piano
class Pop2PianoLayerSelfAttention(nn.Module):
def __init__(self, config, has_relative_attention_bias=False):
super().__init__()
self.SelfAttention = Pop2PianoAttention(config, has_relative_attention_bias=has_relative_attention_bias)
self.layer_norm = Pop2PianoLayerNorm(config.d_model, eps=config.layer_norm_epsilon)
self.dropout = nn.Dropout(config.dropout_rate)
def forward(
self,
hidden_states,
attention_mask=None,
position_bias=None,
layer_head_mask=None,
past_key_value=None,
use_cache=False,
output_attentions=False,
):
normed_hidden_states = self.layer_norm(hidden_states)
attention_output = self.SelfAttention(
normed_hidden_states,
mask=attention_mask,
position_bias=position_bias,
layer_head_mask=layer_head_mask,
past_key_value=past_key_value,
use_cache=use_cache,
output_attentions=output_attentions,
)
hidden_states = hidden_states + self.dropout(attention_output[0])
outputs = (hidden_states,) + attention_output[1:] # add attentions if we output them
return outputs
# Copied from transformers.models.t5.modeling_t5.T5LayerCrossAttention with T5->Pop2Piano,t5->pop2piano
class Pop2PianoLayerCrossAttention(nn.Module):
def __init__(self, config):
super().__init__()
self.EncDecAttention = Pop2PianoAttention(config, has_relative_attention_bias=False)
self.layer_norm = Pop2PianoLayerNorm(config.d_model, eps=config.layer_norm_epsilon)
self.dropout = nn.Dropout(config.dropout_rate)
def forward(
self,
hidden_states,
key_value_states,
attention_mask=None,
position_bias=None,
layer_head_mask=None,
past_key_value=None,
use_cache=False,
query_length=None,
output_attentions=False,
):
normed_hidden_states = self.layer_norm(hidden_states)
attention_output = self.EncDecAttention(
normed_hidden_states,
mask=attention_mask,
key_value_states=key_value_states,
position_bias=position_bias,
layer_head_mask=layer_head_mask,
past_key_value=past_key_value,
use_cache=use_cache,
query_length=query_length,
output_attentions=output_attentions,
)
layer_output = hidden_states + self.dropout(attention_output[0])
outputs = (layer_output,) + attention_output[1:] # add attentions if we output them
return outputs
# Copied from transformers.models.t5.modeling_t5.T5Block with T5->Pop2Piano,t5->pop2piano
class Pop2PianoBlock(nn.Module):
def __init__(self, config, has_relative_attention_bias=False):
super().__init__()
self.is_decoder = config.is_decoder
self.layer = nn.ModuleList()
self.layer.append(Pop2PianoLayerSelfAttention(config, has_relative_attention_bias=has_relative_attention_bias))
if self.is_decoder:
self.layer.append(Pop2PianoLayerCrossAttention(config))
self.layer.append(Pop2PianoLayerFF(config))
def forward(
self,
hidden_states,
attention_mask=None,
position_bias=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
encoder_decoder_position_bias=None,
layer_head_mask=None,
cross_attn_layer_head_mask=None,
past_key_value=None,
use_cache=False,
output_attentions=False,
return_dict=True,
):
if past_key_value is not None:
if not self.is_decoder:
logger.warning("`past_key_values` is passed to the encoder. Please make sure this is intended.")
expected_num_past_key_values = 2 if encoder_hidden_states is None else 4
if len(past_key_value) != expected_num_past_key_values:
raise ValueError(
f"There should be {expected_num_past_key_values} past states. "
f"{'2 (past / key) for cross attention. ' if expected_num_past_key_values == 4 else ''}"
f"Got {len(past_key_value)} past key / value states"
)
self_attn_past_key_value = past_key_value[:2]
cross_attn_past_key_value = past_key_value[2:]
else:
self_attn_past_key_value, cross_attn_past_key_value = None, None
self_attention_outputs = self.layer[0](
hidden_states,
attention_mask=attention_mask,
position_bias=position_bias,
layer_head_mask=layer_head_mask,
past_key_value=self_attn_past_key_value,
use_cache=use_cache,
output_attentions=output_attentions,
)
hidden_states, present_key_value_state = self_attention_outputs[:2]
attention_outputs = self_attention_outputs[2:] # Keep self-attention outputs and relative position weights
# clamp inf values to enable fp16 training
if hidden_states.dtype == torch.float16:
clamp_value = torch.where(
torch.isinf(hidden_states).any(),
torch.finfo(hidden_states.dtype).max - 1000,
torch.finfo(hidden_states.dtype).max,
)
hidden_states = torch.clamp(hidden_states, min=-clamp_value, max=clamp_value)
do_cross_attention = self.is_decoder and encoder_hidden_states is not None
if do_cross_attention:
# the actual query length is unknown for cross attention
# if using past key value states. Need to inject it here
if present_key_value_state is not None:
query_length = present_key_value_state[0].shape[2]
else:
query_length = None
cross_attention_outputs = self.layer[1](
hidden_states,
key_value_states=encoder_hidden_states,
attention_mask=encoder_attention_mask,
position_bias=encoder_decoder_position_bias,
layer_head_mask=cross_attn_layer_head_mask,
past_key_value=cross_attn_past_key_value,
query_length=query_length,
use_cache=use_cache,
output_attentions=output_attentions,
)
hidden_states = cross_attention_outputs[0]
# clamp inf values to enable fp16 training
if hidden_states.dtype == torch.float16:
clamp_value = torch.where(
torch.isinf(hidden_states).any(),
torch.finfo(hidden_states.dtype).max - 1000,
torch.finfo(hidden_states.dtype).max,
)
hidden_states = torch.clamp(hidden_states, min=-clamp_value, max=clamp_value)
# Combine self attn and cross attn key value states
if present_key_value_state is not None:
present_key_value_state = present_key_value_state + cross_attention_outputs[1]
# Keep cross-attention outputs and relative position weights
attention_outputs = attention_outputs + cross_attention_outputs[2:]
# Apply Feed Forward layer
hidden_states = self.layer[-1](hidden_states)
# clamp inf values to enable fp16 training
if hidden_states.dtype == torch.float16:
clamp_value = torch.where(
torch.isinf(hidden_states).any(),
torch.finfo(hidden_states.dtype).max - 1000,
torch.finfo(hidden_states.dtype).max,
)
hidden_states = torch.clamp(hidden_states, min=-clamp_value, max=clamp_value)
outputs = (hidden_states,)
if use_cache:
outputs = outputs + (present_key_value_state,) + attention_outputs
else:
outputs = outputs + attention_outputs
return outputs # hidden-states, present_key_value_states, (self-attention position bias), (self-attention weights), (cross-attention position bias), (cross-attention weights)
class Pop2PianoPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = Pop2PianoConfig
base_model_prefix = "transformer"
is_parallelizable = False
supports_gradient_checkpointing = True
_no_split_modules = ["Pop2PianoBlock"]
_keep_in_fp32_modules = ["wo"]
def _init_weights(self, module):
"""Initialize the weights"""
factor = self.config.initializer_factor # Used for testing weights initialization
if isinstance(module, Pop2PianoLayerNorm):
module.weight.data.fill_(factor * 1.0)
elif isinstance(module, Pop2PianoConcatEmbeddingToMel):
module.embedding.weight.data.normal_(mean=0.0, std=factor * 1.0)
elif isinstance(module, Pop2PianoForConditionalGeneration):
# Mesh TensorFlow embeddings initialization
# See https://github.com/tensorflow/mesh/blob/fa19d69eafc9a482aff0b59ddd96b025c0cb207d/mesh_tensorflow/layers.py#L1624
module.shared.weight.data.normal_(mean=0.0, std=factor * 1.0)
if hasattr(module, "lm_head") and not self.config.tie_word_embeddings:
module.lm_head.weight.data.normal_(mean=0.0, std=factor * 1.0)
elif isinstance(module, Pop2PianoDenseActDense):
# Mesh TensorFlow FF initialization
# See https://github.com/tensorflow/mesh/blob/master/mesh_tensorflow/transformer/transformer_layers.py#L56
# and https://github.com/tensorflow/mesh/blob/fa19d69eafc9a482aff0b59ddd96b025c0cb207d/mesh_tensorflow/layers.py#L89
module.wi.weight.data.normal_(mean=0.0, std=factor * ((self.config.d_model) ** -0.5))
if hasattr(module.wi, "bias") and module.wi.bias is not None:
module.wi.bias.data.zero_()
module.wo.weight.data.normal_(mean=0.0, std=factor * ((self.config.d_ff) ** -0.5))
if hasattr(module.wo, "bias") and module.wo.bias is not None:
module.wo.bias.data.zero_()
elif isinstance(module, Pop2PianoDenseGatedActDense):
module.wi_0.weight.data.normal_(mean=0.0, std=factor * ((self.config.d_model) ** -0.5))
if hasattr(module.wi_0, "bias") and module.wi_0.bias is not None:
module.wi_0.bias.data.zero_()
module.wi_1.weight.data.normal_(mean=0.0, std=factor * ((self.config.d_model) ** -0.5))
if hasattr(module.wi_1, "bias") and module.wi_1.bias is not None:
module.wi_1.bias.data.zero_()
module.wo.weight.data.normal_(mean=0.0, std=factor * ((self.config.d_ff) ** -0.5))
if hasattr(module.wo, "bias") and module.wo.bias is not None:
module.wo.bias.data.zero_()
elif isinstance(module, Pop2PianoAttention):
# Mesh TensorFlow attention initialization to avoid scaling before softmax
# See https://github.com/tensorflow/mesh/blob/fa19d69eafc9a482aff0b59ddd96b025c0cb207d/mesh_tensorflow/transformer/attention.py#L136
d_model = self.config.d_model
key_value_proj_dim = self.config.d_kv
n_heads = self.config.num_heads
module.q.weight.data.normal_(mean=0.0, std=factor * ((d_model * key_value_proj_dim) ** -0.5))
module.k.weight.data.normal_(mean=0.0, std=factor * (d_model**-0.5))
module.v.weight.data.normal_(mean=0.0, std=factor * (d_model**-0.5))
module.o.weight.data.normal_(mean=0.0, std=factor * ((n_heads * key_value_proj_dim) ** -0.5))
if module.has_relative_attention_bias:
module.relative_attention_bias.weight.data.normal_(mean=0.0, std=factor * ((d_model) ** -0.5))
def _shift_right(self, input_ids):
decoder_start_token_id = self.config.decoder_start_token_id
pad_token_id = self.config.pad_token_id
if decoder_start_token_id is None:
raise ValueError(
"self.model.config.decoder_start_token_id has to be defined. In Pop2Piano it is usually set to the pad_token_id."
)
# shift inputs to the right
if is_torch_fx_proxy(input_ids):
# Item assignment is not supported natively for proxies.
shifted_input_ids = torch.full(input_ids.shape[:-1] + (1,), decoder_start_token_id)
shifted_input_ids = torch.cat([shifted_input_ids, input_ids[..., :-1]], dim=-1)
else:
shifted_input_ids = input_ids.new_zeros(input_ids.shape)
shifted_input_ids[..., 1:] = input_ids[..., :-1].clone()
shifted_input_ids[..., 0] = decoder_start_token_id
if pad_token_id is None:
raise ValueError("self.model.config.pad_token_id has to be defined.")
# replace possible -100 values in labels by `pad_token_id`
shifted_input_ids.masked_fill_(shifted_input_ids == -100, pad_token_id)
return shifted_input_ids
class Pop2PianoStack(Pop2PianoPreTrainedModel):
# Copied from transformers.models.t5.modeling_t5.T5Stack.__init__ with T5->Pop2Piano,t5->pop2piano
def __init__(self, config, embed_tokens=None):
super().__init__(config)
self.embed_tokens = embed_tokens
self.is_decoder = config.is_decoder
self.block = nn.ModuleList(
[Pop2PianoBlock(config, has_relative_attention_bias=bool(i == 0)) for i in range(config.num_layers)]
)
self.final_layer_norm = Pop2PianoLayerNorm(config.d_model, eps=config.layer_norm_epsilon)
self.dropout = nn.Dropout(config.dropout_rate)
# Initialize weights and apply final processing
self.post_init()
# Model parallel
self.model_parallel = False
self.device_map = None
self.gradient_checkpointing = False
# Copied from transformers.models.t5.modeling_t5.T5Stack.get_input_embeddings
def get_input_embeddings(self):
return self.embed_tokens
# Copied from transformers.models.t5.modeling_t5.T5Stack.set_input_embeddings
def set_input_embeddings(self, new_embeddings):
self.embed_tokens = new_embeddings
def forward(
self,
input_ids=None,
attention_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
inputs_embeds=None,
head_mask=None,
cross_attn_head_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
use_cache = use_cache if use_cache is not None else self.config.use_cache
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if input_ids is not None and inputs_embeds is not None:
err_msg_prefix = "decoder_" if self.is_decoder else ""
raise ValueError(
f"You cannot specify both {err_msg_prefix}input_ids and {err_msg_prefix}inputs_embeds at the same time"
)
elif input_ids is not None:
input_shape = input_ids.size()
input_ids = input_ids.view(-1, input_shape[-1])
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
err_msg_prefix = "decoder_" if self.is_decoder else ""
raise ValueError(f"You have to specify either {err_msg_prefix}input_ids or {err_msg_prefix}inputs_embeds")
if inputs_embeds is None:
if self.embed_tokens is None:
raise ValueError("You have to initialize the model with valid token embeddings")
inputs_embeds = self.embed_tokens(input_ids)
batch_size, seq_length = input_shape
# required mask seq length can be calculated via length of past
mask_seq_length = past_key_values[0][0].shape[2] + seq_length if past_key_values is not None else seq_length
if use_cache is True:
if not self.is_decoder:
raise ValueError(f"`use_cache` can only be set to `True` if {self} is used as a decoder")
if attention_mask is None:
attention_mask = torch.ones(batch_size, mask_seq_length, device=inputs_embeds.device)
if self.is_decoder and encoder_attention_mask is None and encoder_hidden_states is not None:
encoder_seq_length = encoder_hidden_states.shape[1]
encoder_attention_mask = torch.ones(
batch_size, encoder_seq_length, device=inputs_embeds.device, dtype=torch.long
)
# initialize past_key_values with `None` if past does not exist
if past_key_values is None:
past_key_values = [None] * len(self.block)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask = self.get_extended_attention_mask(attention_mask, input_shape)
# If a 2D or 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.is_decoder and encoder_hidden_states is not None:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(encoder_hidden_shape, device=inputs_embeds.device)
encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = None
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning_once(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
# Prepare head mask if needed
head_mask = self.get_head_mask(head_mask, self.config.num_layers)
cross_attn_head_mask = self.get_head_mask(cross_attn_head_mask, self.config.num_layers)
present_key_value_states = () if use_cache else None
all_hidden_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
all_cross_attentions = () if (output_attentions and self.is_decoder) else None
position_bias = None
encoder_decoder_position_bias = None
hidden_states = self.dropout(inputs_embeds)
for i, (layer_module, past_key_value) in enumerate(zip(self.block, past_key_values)):
layer_head_mask = head_mask[i]
cross_attn_layer_head_mask = cross_attn_head_mask[i]
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer_module.forward,
hidden_states,
extended_attention_mask,
position_bias,
encoder_hidden_states,
encoder_extended_attention_mask,
encoder_decoder_position_bias,
layer_head_mask,
cross_attn_layer_head_mask,
None, # past_key_value is always None with gradient checkpointing
use_cache,
output_attentions,
)
else:
layer_outputs = layer_module(
hidden_states,
attention_mask=extended_attention_mask,
position_bias=position_bias,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
encoder_decoder_position_bias=encoder_decoder_position_bias,
layer_head_mask=layer_head_mask,
cross_attn_layer_head_mask=cross_attn_layer_head_mask,
past_key_value=past_key_value,
use_cache=use_cache,
output_attentions=output_attentions,
)
# layer_outputs is a tuple with:
# hidden-states, key-value-states, (self-attention position bias), (self-attention weights), (cross-attention position bias), (cross-attention weights)
if use_cache is False:
layer_outputs = layer_outputs[:1] + (None,) + layer_outputs[1:]
hidden_states, present_key_value_state = layer_outputs[:2]
# We share the position biases between the layers - the first layer store them
# layer_outputs = hidden-states, key-value-states (self-attention position bias), (self-attention weights),
# (cross-attention position bias), (cross-attention weights)
position_bias = layer_outputs[2]
if self.is_decoder and encoder_hidden_states is not None:
encoder_decoder_position_bias = layer_outputs[4 if output_attentions else 3]
# append next layer key value states
if use_cache:
present_key_value_states = present_key_value_states + (present_key_value_state,)
if output_attentions:
all_attentions = all_attentions + (layer_outputs[3],)
if self.is_decoder:
all_cross_attentions = all_cross_attentions + (layer_outputs[5],)
hidden_states = self.final_layer_norm(hidden_states)
hidden_states = self.dropout(hidden_states)
# Add last layer
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
present_key_value_states,
all_hidden_states,
all_attentions,
all_cross_attentions,
]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=present_key_value_states,
hidden_states=all_hidden_states,
attentions=all_attentions,
cross_attentions=all_cross_attentions,
)
class Pop2PianoConcatEmbeddingToMel(nn.Module):
"""Embedding Matrix for `composer` tokens."""
def __init__(self, config):
super().__init__()
self.embedding = nn.Embedding(num_embeddings=config.composer_vocab_size, embedding_dim=config.d_model)
def forward(self, feature, index_value, embedding_offset):
index_shifted = index_value - embedding_offset
composer_embedding = self.embedding(index_shifted).unsqueeze(1)
inputs_embeds = torch.cat([composer_embedding, feature], dim=1)
return inputs_embeds
Pop2Piano_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`Pop2PianoConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
@add_start_docstrings("""Pop2Piano Model with a `language modeling` head on top.""", Pop2Piano_START_DOCSTRING)
class Pop2PianoForConditionalGeneration(Pop2PianoPreTrainedModel):
_tied_weights_keys = ["encoder.embed_tokens.weight", "decoder.embed_tokens.weight", "lm_head.weight"]
def __init__(self, config: Pop2PianoConfig):
super().__init__(config)
self.config = config
self.model_dim = config.d_model
self.shared = nn.Embedding(config.vocab_size, config.d_model)
self.mel_conditioner = Pop2PianoConcatEmbeddingToMel(config)
encoder_config = copy.deepcopy(config)
encoder_config.is_decoder = False
encoder_config.use_cache = False
encoder_config.is_encoder_decoder = False
self.encoder = Pop2PianoStack(encoder_config, self.shared)
decoder_config = copy.deepcopy(config)
decoder_config.is_decoder = True
decoder_config.is_encoder_decoder = False
decoder_config.num_layers = config.num_decoder_layers
self.decoder = Pop2PianoStack(decoder_config, self.shared)
self.lm_head = nn.Linear(config.d_model, config.vocab_size, bias=False)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.shared
def set_input_embeddings(self, new_embeddings):
self.shared = new_embeddings
self.encoder.set_input_embeddings(new_embeddings)
self.decoder.set_input_embeddings(new_embeddings)
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
def get_output_embeddings(self):
return self.lm_head
def get_encoder(self):
return self.encoder
def get_decoder(self):
return self.decoder
def get_mel_conditioner_outputs(
self,
input_features: torch.FloatTensor,
composer: str,
generation_config: GenerationConfig,
attention_mask: torch.FloatTensor = None,
):
"""
This method is used to concatenate mel conditioner tokens at the front of the input_features in order to
control the type of MIDI token generated by the model.
Args:
input_features (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
input features extracted from the feature extractor.
composer (`str`):
composer token which determines the type of MIDI tokens to be generated.
generation_config (`~generation.GenerationConfig`):
The generation is used to get the composer-feature_token pair.
attention_mask (``, *optional*):
For batched generation `input_features` are padded to have the same shape across all examples.
`attention_mask` helps to determine which areas were padded and which were not.
- 1 for tokens that are **not padded**,
- 0 for tokens that are **padded**.
"""
composer_to_feature_token = generation_config.composer_to_feature_token
if composer not in composer_to_feature_token.keys():
raise ValueError(
f"Please choose a composer from {list(composer_to_feature_token.keys())}. Composer received - {composer}"
)
composer_value = composer_to_feature_token[composer]
composer_value = torch.tensor(composer_value, device=self.device)
composer_value = composer_value.repeat(input_features.shape[0])
embedding_offset = min(composer_to_feature_token.values())
input_features = self.mel_conditioner(
feature=input_features,
index_value=composer_value,
embedding_offset=embedding_offset,
)
if attention_mask is not None:
input_features[~attention_mask[:, 0].bool()] = 0.0
# since self.mel_conditioner adds a new array at the front of inputs_embeds we need to do the same for attention_mask to keep the shapes same
attention_mask = torch.concatenate([attention_mask[:, 0].view(-1, 1), attention_mask], axis=1)
return input_features, attention_mask
return input_features, None
@add_start_docstrings_to_model_forward(POP2PIANO_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=Seq2SeqLMOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.BoolTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
decoder_head_mask: Optional[torch.FloatTensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[Tuple[Tuple[torch.Tensor]]] = None,
past_key_values: Optional[Tuple[Tuple[torch.Tensor]]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
input_features: Optional[torch.FloatTensor] = None,
decoder_inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.FloatTensor], Seq2SeqLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[-100, 0, ...,
config.vocab_size - 1]`. All labels set to `-100` are ignored (masked), the loss is only computed for
labels in `[0, ..., config.vocab_size]`
Returns:
"""
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if inputs_embeds is not None and input_features is not None:
raise ValueError("Both `inputs_embeds` and `input_features` received! Please provide only one of them")
elif input_features is not None and inputs_embeds is None:
inputs_embeds = input_features
# Encode if needed (training, first prediction pass)
if encoder_outputs is None:
# Convert encoder inputs in embeddings if needed
encoder_outputs = self.encoder(
input_ids=input_ids,
attention_mask=attention_mask,
inputs_embeds=inputs_embeds,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
elif return_dict and not isinstance(encoder_outputs, BaseModelOutput):
encoder_outputs = BaseModelOutput(
last_hidden_state=encoder_outputs[0],
hidden_states=encoder_outputs[1] if len(encoder_outputs) > 1 else None,
attentions=encoder_outputs[2] if len(encoder_outputs) > 2 else None,
)
hidden_states = encoder_outputs[0]
if labels is not None and decoder_input_ids is None and decoder_inputs_embeds is None:
# get decoder inputs from shifting lm labels to the right
decoder_input_ids = self._shift_right(labels)
# Decode
decoder_outputs = self.decoder(
input_ids=decoder_input_ids,
attention_mask=decoder_attention_mask,
inputs_embeds=decoder_inputs_embeds,
past_key_values=past_key_values,
encoder_hidden_states=hidden_states,
encoder_attention_mask=attention_mask,
head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = decoder_outputs[0]
if self.config.tie_word_embeddings:
# Rescale output before projecting on vocab
# See https://github.com/tensorflow/mesh/blob/fa19d69eafc9a482aff0b59ddd96b025c0cb207d/mesh_tensorflow/transformer/transformer.py#L586
sequence_output = sequence_output * (self.model_dim**-0.5)
lm_logits = self.lm_head(sequence_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss(ignore_index=-100)
loss = loss_fct(lm_logits.view(-1, lm_logits.size(-1)), labels.view(-1))
if not return_dict:
output = (lm_logits,) + decoder_outputs[1:] + encoder_outputs
return ((loss,) + output) if loss is not None else output
return Seq2SeqLMOutput(
loss=loss,
logits=lm_logits,
past_key_values=decoder_outputs.past_key_values,
decoder_hidden_states=decoder_outputs.hidden_states,
decoder_attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
encoder_last_hidden_state=encoder_outputs.last_hidden_state,
encoder_hidden_states=encoder_outputs.hidden_states,
encoder_attentions=encoder_outputs.attentions,
)
@torch.no_grad()
def generate(
self,
input_features,
attention_mask=None,
composer="composer1",
generation_config=None,
**kwargs,
):
"""
Generates token ids for midi outputs.
<Tip warning={true}>
Most generation-controlling parameters are set in `generation_config` which, if not passed, will be set to the
model's default generation configuration. You can override any `generation_config` by passing the corresponding
parameters to generate(), e.g. `.generate(inputs, num_beams=4, do_sample=True)`. For an overview of generation
strategies and code examples, check out the [following guide](./generation_strategies).
</Tip>
Parameters:
input_features (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
This is the featurized version of audio generated by `Pop2PianoFeatureExtractor`.
attention_mask:
For batched generation `input_features` are padded to have the same shape across all examples.
`attention_mask` helps to determine which areas were padded and which were not.
- 1 for tokens that are **not padded**,
- 0 for tokens that are **padded**.
composer (`str`, *optional*, defaults to `"composer1"`):
This value is passed to `Pop2PianoConcatEmbeddingToMel` to generate different embeddings for each
`"composer"`. Please make sure that the composet value is present in `composer_to_feature_token` in
`generation_config`. For an example please see
https://huggingface.co/sweetcocoa/pop2piano/blob/main/generation_config.json .
generation_config (`~generation.GenerationConfig`, *optional*):
The generation configuration to be used as base parametrization for the generation call. `**kwargs`
passed to generate matching the attributes of `generation_config` will override them. If
`generation_config` is not provided, the default will be used, which had the following loading
priority: 1) from the `generation_config.json` model file, if it exists; 2) from the model
configuration. Please note that unspecified parameters will inherit [`~generation.GenerationConfig`]'s
default values, whose documentation should be checked to parameterize generation.
kwargs:
Ad hoc parametrization of `generate_config` and/or additional model-specific kwargs that will be
forwarded to the `forward` function of the model. If the model is an encoder-decoder model, encoder
specific kwargs should not be prefixed and decoder specific kwargs should be prefixed with *decoder_*.
Return:
[`~utils.ModelOutput`] or `torch.LongTensor`: A [`~utils.ModelOutput`] (if `return_dict_in_generate=True`
or when `config.return_dict_in_generate=True`) or a `torch.FloatTensor`.
Since Pop2Piano is an encoder-decoder model (`model.config.is_encoder_decoder=True`), the possible
[`~utils.ModelOutput`] types are:
- [`~generation.GenerateEncoderDecoderOutput`],
- [`~generation.GenerateBeamEncoderDecoderOutput`]
"""
if generation_config is None:
generation_config = self.generation_config
generation_config.update(**kwargs)
# check for composer_to_feature_token
if not hasattr(generation_config, "composer_to_feature_token"):
raise ValueError(
"`composer_to_feature_token` was not found! Please refer to "
"https://huggingface.co/sweetcocoa/pop2piano/blob/main/generation_config.json"
"and parse a dict like that."
)
if len(generation_config.composer_to_feature_token) != self.config.composer_vocab_size:
raise ValueError(
"config.composer_vocab_size must be same as the number of keys in "
f"generation_config.composer_to_feature_token! "
f"Found {self.config.composer_vocab_size} vs {len(generation_config.composer_to_feature_token)}."
)
# to control the variation of generated MIDI tokens we concatenate mel-conditioner tokens(which depends on composer_token)
# at the front of input_features.
input_features, attention_mask = self.get_mel_conditioner_outputs(
input_features=input_features,
attention_mask=attention_mask,
composer=composer,
generation_config=generation_config,
)
return super().generate(
inputs=None,
inputs_embeds=input_features,
attention_mask=attention_mask,
generation_config=generation_config,
**kwargs,
)
def prepare_inputs_for_generation(
self,
input_ids,
past_key_values=None,
attention_mask=None,
head_mask=None,
decoder_head_mask=None,
cross_attn_head_mask=None,
use_cache=None,
encoder_outputs=None,
**kwargs,
):
# cut decoder_input_ids if past is used
if past_key_values is not None:
input_ids = input_ids[:, -1:]
return {
"decoder_input_ids": input_ids,
"past_key_values": past_key_values,
"encoder_outputs": encoder_outputs,
"attention_mask": attention_mask,
"head_mask": head_mask,
"decoder_head_mask": decoder_head_mask,
"cross_attn_head_mask": cross_attn_head_mask,
"use_cache": use_cache,
}
def prepare_decoder_input_ids_from_labels(self, labels: torch.Tensor):
return self._shift_right(labels)
def _reorder_cache(self, past_key_values, beam_idx):
# if decoder past is not included in output
# speedy decoding is disabled and no need to reorder
if past_key_values is None:
logger.warning("You might want to consider setting `use_cache=True` to speed up decoding")
return past_key_values
reordered_decoder_past = ()
for layer_past_states in past_key_values:
# get the correct batch idx from layer past batch dim
# batch dim of `past` is at 2nd position
reordered_layer_past_states = ()
for layer_past_state in layer_past_states:
# need to set correct `past` for each of the four key / value states
reordered_layer_past_states = reordered_layer_past_states + (
layer_past_state.index_select(0, beam_idx.to(layer_past_state.device)),
)
if reordered_layer_past_states[0].shape != layer_past_states[0].shape:
raise ValueError(
f"reordered_layer_past_states[0] shape {reordered_layer_past_states[0].shape} and layer_past_states[0] shape {layer_past_states[0].shape} mismatched"
)
if len(reordered_layer_past_states) != len(layer_past_states):
raise ValueError(
f"length of reordered_layer_past_states {len(reordered_layer_past_states)} and length of layer_past_states {len(layer_past_states)} mismatched"
)
reordered_decoder_past = reordered_decoder_past + (reordered_layer_past_states,)
return reordered_decoder_past
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/pop2piano/__init__.py | # Copyright 2023 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_essentia_available,
is_librosa_available,
is_pretty_midi_available,
is_scipy_available,
is_torch_available,
)
_import_structure = {
"configuration_pop2piano": ["POP2PIANO_PRETRAINED_CONFIG_ARCHIVE_MAP", "Pop2PianoConfig"],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_pop2piano"] = [
"POP2PIANO_PRETRAINED_MODEL_ARCHIVE_LIST",
"Pop2PianoForConditionalGeneration",
"Pop2PianoPreTrainedModel",
]
try:
if not (is_librosa_available() and is_essentia_available() and is_scipy_available() and is_torch_available()):
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["feature_extraction_pop2piano"] = ["Pop2PianoFeatureExtractor"]
try:
if not (is_pretty_midi_available() and is_torch_available()):
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["tokenization_pop2piano"] = ["Pop2PianoTokenizer"]
try:
if not (
is_pretty_midi_available()
and is_torch_available()
and is_librosa_available()
and is_essentia_available()
and is_scipy_available()
):
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["processing_pop2piano"] = ["Pop2PianoProcessor"]
if TYPE_CHECKING:
from .configuration_pop2piano import POP2PIANO_PRETRAINED_CONFIG_ARCHIVE_MAP, Pop2PianoConfig
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_pop2piano import (
POP2PIANO_PRETRAINED_MODEL_ARCHIVE_LIST,
Pop2PianoForConditionalGeneration,
Pop2PianoPreTrainedModel,
)
try:
if not (is_librosa_available() and is_essentia_available() and is_scipy_available() and is_torch_available()):
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .feature_extraction_pop2piano import Pop2PianoFeatureExtractor
try:
if not (is_pretty_midi_available() and is_torch_available()):
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .tokenization_pop2piano import Pop2PianoTokenizer
try:
if not (
is_pretty_midi_available()
and is_torch_available()
and is_librosa_available()
and is_essentia_available()
and is_scipy_available()
):
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .processing_pop2piano import Pop2PianoProcessor
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/pop2piano/configuration_pop2piano.py | # coding=utf-8
# Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Pop2Piano model configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
POP2PIANO_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"sweetcocoa/pop2piano": "https://huggingface.co/sweetcocoa/pop2piano/blob/main/config.json"
}
class Pop2PianoConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`Pop2PianoForConditionalGeneration`]. It is used
to instantiate a Pop2PianoForConditionalGeneration model according to the specified arguments, defining the model
architecture. Instantiating a configuration with the defaults will yield a similar configuration to that of the
Pop2Piano [sweetcocoa/pop2piano](https://huggingface.co/sweetcocoa/pop2piano) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Arguments:
vocab_size (`int`, *optional*, defaults to 2400):
Vocabulary size of the `Pop2PianoForConditionalGeneration` model. Defines the number of different tokens
that can be represented by the `inputs_ids` passed when calling [`Pop2PianoForConditionalGeneration`].
composer_vocab_size (`int`, *optional*, defaults to 21):
Denotes the number of composers.
d_model (`int`, *optional*, defaults to 512):
Size of the encoder layers and the pooler layer.
d_kv (`int`, *optional*, defaults to 64):
Size of the key, query, value projections per attention head. The `inner_dim` of the projection layer will
be defined as `num_heads * d_kv`.
d_ff (`int`, *optional*, defaults to 2048):
Size of the intermediate feed forward layer in each `Pop2PianoBlock`.
num_layers (`int`, *optional*, defaults to 6):
Number of hidden layers in the Transformer encoder.
num_decoder_layers (`int`, *optional*):
Number of hidden layers in the Transformer decoder. Will use the same value as `num_layers` if not set.
num_heads (`int`, *optional*, defaults to 8):
Number of attention heads for each attention layer in the Transformer encoder.
relative_attention_num_buckets (`int`, *optional*, defaults to 32):
The number of buckets to use for each attention layer.
relative_attention_max_distance (`int`, *optional*, defaults to 128):
The maximum distance of the longer sequences for the bucket separation.
dropout_rate (`float`, *optional*, defaults to 0.1):
The ratio for all dropout layers.
layer_norm_epsilon (`float`, *optional*, defaults to 1e-6):
The epsilon used by the layer normalization layers.
initializer_factor (`float`, *optional*, defaults to 1.0):
A factor for initializing all weight matrices (should be kept to 1.0, used internally for initialization
testing).
feed_forward_proj (`string`, *optional*, defaults to `"gated-gelu"`):
Type of feed forward layer to be used. Should be one of `"relu"` or `"gated-gelu"`.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models).
dense_act_fn (`string`, *optional*, defaults to `"relu"`):
Type of Activation Function to be used in `Pop2PianoDenseActDense` and in `Pop2PianoDenseGatedActDense`.
"""
model_type = "pop2piano"
keys_to_ignore_at_inference = ["past_key_values"]
def __init__(
self,
vocab_size=2400,
composer_vocab_size=21,
d_model=512,
d_kv=64,
d_ff=2048,
num_layers=6,
num_decoder_layers=None,
num_heads=8,
relative_attention_num_buckets=32,
relative_attention_max_distance=128,
dropout_rate=0.1,
layer_norm_epsilon=1e-6,
initializer_factor=1.0,
feed_forward_proj="gated-gelu", # noqa
is_encoder_decoder=True,
use_cache=True,
pad_token_id=0,
eos_token_id=1,
dense_act_fn="relu",
**kwargs,
):
self.vocab_size = vocab_size
self.composer_vocab_size = composer_vocab_size
self.d_model = d_model
self.d_kv = d_kv
self.d_ff = d_ff
self.num_layers = num_layers
self.num_decoder_layers = num_decoder_layers if num_decoder_layers is not None else self.num_layers
self.num_heads = num_heads
self.relative_attention_num_buckets = relative_attention_num_buckets
self.relative_attention_max_distance = relative_attention_max_distance
self.dropout_rate = dropout_rate
self.layer_norm_epsilon = layer_norm_epsilon
self.initializer_factor = initializer_factor
self.feed_forward_proj = feed_forward_proj
self.use_cache = use_cache
self.dense_act_fn = dense_act_fn
self.is_gated_act = self.feed_forward_proj.split("-")[0] == "gated"
self.hidden_size = self.d_model
self.num_attention_heads = num_heads
self.num_hidden_layers = num_layers
super().__init__(
pad_token_id=pad_token_id,
eos_token_id=eos_token_id,
is_encoder_decoder=is_encoder_decoder,
**kwargs,
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/pop2piano/tokenization_pop2piano.py | # coding=utf-8
# Copyright 2023 The Pop2Piano Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization class for Pop2Piano."""
import json
import os
from typing import List, Optional, Tuple, Union
import numpy as np
from ...feature_extraction_utils import BatchFeature
from ...tokenization_utils import AddedToken, BatchEncoding, PaddingStrategy, PreTrainedTokenizer, TruncationStrategy
from ...utils import TensorType, is_pretty_midi_available, logging, requires_backends, to_numpy
if is_pretty_midi_available():
import pretty_midi
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {
"vocab": "vocab.json",
}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab": {
"sweetcocoa/pop2piano": "https://huggingface.co/sweetcocoa/pop2piano/blob/main/vocab.json",
},
}
def token_time_to_note(number, cutoff_time_idx, current_idx):
current_idx += number
if cutoff_time_idx is not None:
current_idx = min(current_idx, cutoff_time_idx)
return current_idx
def token_note_to_note(number, current_velocity, default_velocity, note_onsets_ready, current_idx, notes):
if note_onsets_ready[number] is not None:
# offset with onset
onset_idx = note_onsets_ready[number]
if onset_idx < current_idx:
# Time shift after previous note_on
offset_idx = current_idx
notes.append([onset_idx, offset_idx, number, default_velocity])
onsets_ready = None if current_velocity == 0 else current_idx
note_onsets_ready[number] = onsets_ready
else:
note_onsets_ready[number] = current_idx
return notes
class Pop2PianoTokenizer(PreTrainedTokenizer):
"""
Constructs a Pop2Piano tokenizer. This tokenizer does not require training.
This tokenizer inherits from [`PreTrainedTokenizer`] which contains most of the main methods. Users should refer to
this superclass for more information regarding those methods.
Args:
vocab (`str`):
Path to the vocab file which contains the vocabulary.
default_velocity (`int`, *optional*, defaults to 77):
Determines the default velocity to be used while creating midi Notes.
num_bars (`int`, *optional*, defaults to 2):
Determines cutoff_time_idx in for each token.
"""
model_input_names = ["token_ids", "attention_mask"]
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
def __init__(
self,
vocab,
default_velocity=77,
num_bars=2,
unk_token="-1",
eos_token="1",
pad_token="0",
bos_token="2",
**kwargs,
):
unk_token = AddedToken(unk_token, lstrip=False, rstrip=False) if isinstance(unk_token, str) else unk_token
eos_token = AddedToken(eos_token, lstrip=False, rstrip=False) if isinstance(eos_token, str) else eos_token
pad_token = AddedToken(pad_token, lstrip=False, rstrip=False) if isinstance(pad_token, str) else pad_token
bos_token = AddedToken(bos_token, lstrip=False, rstrip=False) if isinstance(bos_token, str) else bos_token
self.default_velocity = default_velocity
self.num_bars = num_bars
# Load the vocab
with open(vocab, "rb") as file:
self.encoder = json.load(file)
# create mappings for encoder
self.decoder = {v: k for k, v in self.encoder.items()}
super().__init__(
unk_token=unk_token,
eos_token=eos_token,
pad_token=pad_token,
bos_token=bos_token,
**kwargs,
)
@property
def vocab_size(self):
"""Returns the vocabulary size of the tokenizer."""
return len(self.encoder)
def get_vocab(self):
"""Returns the vocabulary of the tokenizer."""
return dict(self.encoder, **self.added_tokens_encoder)
def _convert_id_to_token(self, token_id: int) -> list:
"""
Decodes the token ids generated by the transformer into notes.
Args:
token_id (`int`):
This denotes the ids generated by the transformers to be converted to Midi tokens.
Returns:
`List`: A list consists of token_type (`str`) and value (`int`).
"""
token_type_value = self.decoder.get(token_id, f"{self.unk_token}_TOKEN_TIME")
token_type_value = token_type_value.split("_")
token_type, value = "_".join(token_type_value[1:]), int(token_type_value[0])
return [token_type, value]
def _convert_token_to_id(self, token, token_type="TOKEN_TIME") -> int:
"""
Encodes the Midi tokens to transformer generated token ids.
Args:
token (`int`):
This denotes the token value.
token_type (`str`):
This denotes the type of the token. There are four types of midi tokens such as "TOKEN_TIME",
"TOKEN_VELOCITY", "TOKEN_NOTE" and "TOKEN_SPECIAL".
Returns:
`int`: returns the id of the token.
"""
return self.encoder.get(f"{token}_{token_type}", int(self.unk_token))
def relative_batch_tokens_ids_to_notes(
self,
tokens: np.ndarray,
beat_offset_idx: int,
bars_per_batch: int,
cutoff_time_idx: int,
):
"""
Converts relative tokens to notes which are then used to generate pretty midi object.
Args:
tokens (`numpy.ndarray`):
Tokens to be converted to notes.
beat_offset_idx (`int`):
Denotes beat offset index for each note in generated Midi.
bars_per_batch (`int`):
A parameter to control the Midi output generation.
cutoff_time_idx (`int`):
Denotes the cutoff time index for each note in generated Midi.
"""
notes = None
for index in range(len(tokens)):
_tokens = tokens[index]
_start_idx = beat_offset_idx + index * bars_per_batch * 4
_cutoff_time_idx = cutoff_time_idx + _start_idx
_notes = self.relative_tokens_ids_to_notes(
_tokens,
start_idx=_start_idx,
cutoff_time_idx=_cutoff_time_idx,
)
if len(_notes) == 0:
pass
elif notes is None:
notes = _notes
else:
notes = np.concatenate((notes, _notes), axis=0)
if notes is None:
return []
return notes
def relative_batch_tokens_ids_to_midi(
self,
tokens: np.ndarray,
beatstep: np.ndarray,
beat_offset_idx: int = 0,
bars_per_batch: int = 2,
cutoff_time_idx: int = 12,
):
"""
Converts tokens to Midi. This method calls `relative_batch_tokens_ids_to_notes` method to convert batch tokens
to notes then uses `notes_to_midi` method to convert them to Midi.
Args:
tokens (`numpy.ndarray`):
Denotes tokens which alongside beatstep will be converted to Midi.
beatstep (`np.ndarray`):
We get beatstep from feature extractor which is also used to get Midi.
beat_offset_idx (`int`, *optional*, defaults to 0):
Denotes beat offset index for each note in generated Midi.
bars_per_batch (`int`, *optional*, defaults to 2):
A parameter to control the Midi output generation.
cutoff_time_idx (`int`, *optional*, defaults to 12):
Denotes the cutoff time index for each note in generated Midi.
"""
beat_offset_idx = 0 if beat_offset_idx is None else beat_offset_idx
notes = self.relative_batch_tokens_ids_to_notes(
tokens=tokens,
beat_offset_idx=beat_offset_idx,
bars_per_batch=bars_per_batch,
cutoff_time_idx=cutoff_time_idx,
)
midi = self.notes_to_midi(notes, beatstep, offset_sec=beatstep[beat_offset_idx])
return midi
# Taken from the original code
# Please see https://github.com/sweetcocoa/pop2piano/blob/fac11e8dcfc73487513f4588e8d0c22a22f2fdc5/midi_tokenizer.py#L257
def relative_tokens_ids_to_notes(self, tokens: np.ndarray, start_idx: float, cutoff_time_idx: float = None):
"""
Converts relative tokens to notes which will then be used to create Pretty Midi objects.
Args:
tokens (`numpy.ndarray`):
Relative Tokens which will be converted to notes.
start_idx (`float`):
A parameter which denotes the starting index.
cutoff_time_idx (`float`, *optional*):
A parameter used while converting tokens to notes.
"""
words = [self._convert_id_to_token(token) for token in tokens]
current_idx = start_idx
current_velocity = 0
note_onsets_ready = [None for i in range(sum([k.endswith("NOTE") for k in self.encoder.keys()]) + 1)]
notes = []
for token_type, number in words:
if token_type == "TOKEN_SPECIAL":
if number == 1:
break
elif token_type == "TOKEN_TIME":
current_idx = token_time_to_note(
number=number, cutoff_time_idx=cutoff_time_idx, current_idx=current_idx
)
elif token_type == "TOKEN_VELOCITY":
current_velocity = number
elif token_type == "TOKEN_NOTE":
notes = token_note_to_note(
number=number,
current_velocity=current_velocity,
default_velocity=self.default_velocity,
note_onsets_ready=note_onsets_ready,
current_idx=current_idx,
notes=notes,
)
else:
raise ValueError("Token type not understood!")
for pitch, note_onset in enumerate(note_onsets_ready):
# force offset if no offset for each pitch
if note_onset is not None:
if cutoff_time_idx is None:
cutoff = note_onset + 1
else:
cutoff = max(cutoff_time_idx, note_onset + 1)
offset_idx = max(current_idx, cutoff)
notes.append([note_onset, offset_idx, pitch, self.default_velocity])
if len(notes) == 0:
return []
else:
notes = np.array(notes)
note_order = notes[:, 0] * 128 + notes[:, 1]
notes = notes[note_order.argsort()]
return notes
def notes_to_midi(self, notes: np.ndarray, beatstep: np.ndarray, offset_sec: int = 0.0):
"""
Converts notes to Midi.
Args:
notes (`numpy.ndarray`):
This is used to create Pretty Midi objects.
beatstep (`numpy.ndarray`):
This is the extrapolated beatstep that we get from feature extractor.
offset_sec (`int`, *optional*, defaults to 0.0):
This represents the offset seconds which is used while creating each Pretty Midi Note.
"""
requires_backends(self, ["pretty_midi"])
new_pm = pretty_midi.PrettyMIDI(resolution=384, initial_tempo=120.0)
new_inst = pretty_midi.Instrument(program=0)
new_notes = []
for onset_idx, offset_idx, pitch, velocity in notes:
new_note = pretty_midi.Note(
velocity=velocity,
pitch=pitch,
start=beatstep[onset_idx] - offset_sec,
end=beatstep[offset_idx] - offset_sec,
)
new_notes.append(new_note)
new_inst.notes = new_notes
new_pm.instruments.append(new_inst)
new_pm.remove_invalid_notes()
return new_pm
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
"""
Saves the tokenizer's vocabulary dictionary to the provided save_directory.
Args:
save_directory (`str`):
A path to the directory where to saved. It will be created if it doesn't exist.
filename_prefix (`Optional[str]`, *optional*):
A prefix to add to the names of the files saved by the tokenizer.
"""
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory")
return
# Save the encoder.
out_vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab"]
)
with open(out_vocab_file, "w") as file:
file.write(json.dumps(self.encoder))
return (out_vocab_file,)
def encode_plus(
self,
notes: Union[np.ndarray, List[pretty_midi.Note]],
truncation_strategy: Optional[TruncationStrategy] = None,
max_length: Optional[int] = None,
**kwargs,
) -> BatchEncoding:
r"""
This is the `encode_plus` method for `Pop2PianoTokenizer`. It converts the midi notes to the transformer
generated token ids. It only works on a single batch, to process multiple batches please use
`batch_encode_plus` or `__call__` method.
Args:
notes (`numpy.ndarray` of shape `[sequence_length, 4]` or `list` of `pretty_midi.Note` objects):
This represents the midi notes. If `notes` is a `numpy.ndarray`:
- Each sequence must have 4 values, they are `onset idx`, `offset idx`, `pitch` and `velocity`.
If `notes` is a `list` containing `pretty_midi.Note` objects:
- Each sequence must have 4 attributes, they are `start`, `end`, `pitch` and `velocity`.
truncation_strategy ([`~tokenization_utils_base.TruncationStrategy`], *optional*):
Indicates the truncation strategy that is going to be used during truncation.
max_length (`int`, *optional*):
Maximum length of the returned list and optionally padding length (see above).
Returns:
`BatchEncoding` containing the tokens ids.
"""
requires_backends(self, ["pretty_midi"])
# check if notes is a pretty_midi object or not, if yes then extract the attributes and put them into a numpy
# array.
if isinstance(notes[0], pretty_midi.Note):
notes = np.array(
[[each_note.start, each_note.end, each_note.pitch, each_note.velocity] for each_note in notes]
).reshape(-1, 4)
# to round up all the values to the closest int values.
notes = np.round(notes).astype(np.int32)
max_time_idx = notes[:, :2].max()
times = [[] for i in range((max_time_idx + 1))]
for onset, offset, pitch, velocity in notes:
times[onset].append([pitch, velocity])
times[offset].append([pitch, 0])
tokens = []
current_velocity = 0
for i, time in enumerate(times):
if len(time) == 0:
continue
tokens.append(self._convert_token_to_id(i, "TOKEN_TIME"))
for pitch, velocity in time:
velocity = int(velocity > 0)
if current_velocity != velocity:
current_velocity = velocity
tokens.append(self._convert_token_to_id(velocity, "TOKEN_VELOCITY"))
tokens.append(self._convert_token_to_id(pitch, "TOKEN_NOTE"))
total_len = len(tokens)
# truncation
if truncation_strategy != TruncationStrategy.DO_NOT_TRUNCATE and max_length and total_len > max_length:
tokens, _, _ = self.truncate_sequences(
ids=tokens,
num_tokens_to_remove=total_len - max_length,
truncation_strategy=truncation_strategy,
**kwargs,
)
return BatchEncoding({"token_ids": tokens})
def batch_encode_plus(
self,
notes: Union[np.ndarray, List[pretty_midi.Note]],
truncation_strategy: Optional[TruncationStrategy] = None,
max_length: Optional[int] = None,
**kwargs,
) -> BatchEncoding:
r"""
This is the `batch_encode_plus` method for `Pop2PianoTokenizer`. It converts the midi notes to the transformer
generated token ids. It works on multiple batches by calling `encode_plus` multiple times in a loop.
Args:
notes (`numpy.ndarray` of shape `[batch_size, sequence_length, 4]` or `list` of `pretty_midi.Note` objects):
This represents the midi notes. If `notes` is a `numpy.ndarray`:
- Each sequence must have 4 values, they are `onset idx`, `offset idx`, `pitch` and `velocity`.
If `notes` is a `list` containing `pretty_midi.Note` objects:
- Each sequence must have 4 attributes, they are `start`, `end`, `pitch` and `velocity`.
truncation_strategy ([`~tokenization_utils_base.TruncationStrategy`], *optional*):
Indicates the truncation strategy that is going to be used during truncation.
max_length (`int`, *optional*):
Maximum length of the returned list and optionally padding length (see above).
Returns:
`BatchEncoding` containing the tokens ids.
"""
encoded_batch_token_ids = []
for i in range(len(notes)):
encoded_batch_token_ids.append(
self.encode_plus(
notes[i],
truncation_strategy=truncation_strategy,
max_length=max_length,
**kwargs,
)["token_ids"]
)
return BatchEncoding({"token_ids": encoded_batch_token_ids})
def __call__(
self,
notes: Union[
np.ndarray,
List[pretty_midi.Note],
List[List[pretty_midi.Note]],
],
padding: Union[bool, str, PaddingStrategy] = False,
truncation: Union[bool, str, TruncationStrategy] = None,
max_length: Optional[int] = None,
pad_to_multiple_of: Optional[int] = None,
return_attention_mask: Optional[bool] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
verbose: bool = True,
**kwargs,
) -> BatchEncoding:
r"""
This is the `__call__` method for `Pop2PianoTokenizer`. It converts the midi notes to the transformer generated
token ids.
Args:
notes (`numpy.ndarray` of shape `[batch_size, max_sequence_length, 4]` or `list` of `pretty_midi.Note` objects):
This represents the midi notes.
If `notes` is a `numpy.ndarray`:
- Each sequence must have 4 values, they are `onset idx`, `offset idx`, `pitch` and `velocity`.
If `notes` is a `list` containing `pretty_midi.Note` objects:
- Each sequence must have 4 attributes, they are `start`, `end`, `pitch` and `velocity`.
padding (`bool`, `str` or [`~file_utils.PaddingStrategy`], *optional*, defaults to `False`):
Activates and controls padding. Accepts the following values:
- `True` or `'longest'`: Pad to the longest sequence in the batch (or no padding if only a single
sequence if provided).
- `'max_length'`: Pad to a maximum length specified with the argument `max_length` or to the maximum
acceptable input length for the model if that argument is not provided.
- `False` or `'do_not_pad'` (default): No padding (i.e., can output a batch with sequences of different
lengths).
truncation (`bool`, `str` or [`~tokenization_utils_base.TruncationStrategy`], *optional*, defaults to `False`):
Activates and controls truncation. Accepts the following values:
- `True` or `'longest_first'`: Truncate to a maximum length specified with the argument `max_length` or
to the maximum acceptable input length for the model if that argument is not provided. This will
truncate token by token, removing a token from the longest sequence in the pair if a pair of
sequences (or a batch of pairs) is provided.
- `'only_first'`: Truncate to a maximum length specified with the argument `max_length` or to the
maximum acceptable input length for the model if that argument is not provided. This will only
truncate the first sequence of a pair if a pair of sequences (or a batch of pairs) is provided.
- `'only_second'`: Truncate to a maximum length specified with the argument `max_length` or to the
maximum acceptable input length for the model if that argument is not provided. This will only
truncate the second sequence of a pair if a pair of sequences (or a batch of pairs) is provided.
- `False` or `'do_not_truncate'` (default): No truncation (i.e., can output batch with sequence lengths
greater than the model maximum admissible input size).
max_length (`int`, *optional*):
Controls the maximum length to use by one of the truncation/padding parameters. If left unset or set to
`None`, this will use the predefined model maximum length if a maximum length is required by one of the
truncation/padding parameters. If the model has no specific maximum input length (like XLNet)
truncation/padding to a maximum length will be deactivated.
pad_to_multiple_of (`int`, *optional*):
If set will pad the sequence to a multiple of the provided value. This is especially useful to enable
the use of Tensor Cores on NVIDIA hardware with compute capability `>= 7.5` (Volta).
return_attention_mask (`bool`, *optional*):
Whether to return the attention mask. If left to the default, will return the attention mask according
to the specific tokenizer's default, defined by the `return_outputs` attribute.
[What are attention masks?](../glossary#attention-mask)
return_tensors (`str` or [`~file_utils.TensorType`], *optional*):
If set, will return tensors instead of list of python integers. Acceptable values are:
- `'tf'`: Return TensorFlow `tf.constant` objects.
- `'pt'`: Return PyTorch `torch.Tensor` objects.
- `'np'`: Return Numpy `np.ndarray` objects.
verbose (`bool`, *optional*, defaults to `True`):
Whether or not to print more information and warnings.
Returns:
`BatchEncoding` containing the token_ids.
"""
# check if it is batched or not
# it is batched if its a list containing a list of `pretty_midi.Notes` where the outer list contains all the
# batches and the inner list contains all Notes for a single batch. Otherwise if np.ndarray is passed it will be
# considered batched if it has shape of `[batch_size, seqence_length, 4]` or ndim=3.
is_batched = notes.ndim == 3 if isinstance(notes, np.ndarray) else isinstance(notes[0], list)
# get the truncation and padding strategy
padding_strategy, truncation_strategy, max_length, kwargs = self._get_padding_truncation_strategies(
padding=padding,
truncation=truncation,
max_length=max_length,
pad_to_multiple_of=pad_to_multiple_of,
verbose=verbose,
**kwargs,
)
if is_batched:
# If the user has not explicitly mentioned `return_attention_mask` as False, we change it to True
return_attention_mask = True if return_attention_mask is None else return_attention_mask
token_ids = self.batch_encode_plus(
notes=notes,
truncation_strategy=truncation_strategy,
max_length=max_length,
**kwargs,
)
else:
token_ids = self.encode_plus(
notes=notes,
truncation_strategy=truncation_strategy,
max_length=max_length,
**kwargs,
)
# since we already have truncated sequnences we are just left to do padding
token_ids = self.pad(
token_ids,
padding=padding_strategy,
max_length=max_length,
pad_to_multiple_of=pad_to_multiple_of,
return_attention_mask=return_attention_mask,
return_tensors=return_tensors,
verbose=verbose,
)
return token_ids
def batch_decode(
self,
token_ids,
feature_extractor_output: BatchFeature,
return_midi: bool = True,
):
r"""
This is the `batch_decode` method for `Pop2PianoTokenizer`. It converts the token_ids generated by the
transformer to midi_notes and returns them.
Args:
token_ids (`Union[np.ndarray, torch.Tensor, tf.Tensor]`):
Output token_ids of `Pop2PianoConditionalGeneration` model.
feature_extractor_output (`BatchFeature`):
Denotes the output of `Pop2PianoFeatureExtractor.__call__`. It must contain `"beatstep"` and
`"extrapolated_beatstep"`. Also `"attention_mask_beatsteps"` and
`"attention_mask_extrapolated_beatstep"`
should be present if they were returned by the feature extractor.
return_midi (`bool`, *optional*, defaults to `True`):
Whether to return midi object or not.
Returns:
If `return_midi` is True:
- `BatchEncoding` containing both `notes` and `pretty_midi.pretty_midi.PrettyMIDI` objects.
If `return_midi` is False:
- `BatchEncoding` containing `notes`.
"""
# check if they have attention_masks(attention_mask, attention_mask_beatsteps, attention_mask_extrapolated_beatstep) or not
attention_masks_present = bool(
hasattr(feature_extractor_output, "attention_mask")
and hasattr(feature_extractor_output, "attention_mask_beatsteps")
and hasattr(feature_extractor_output, "attention_mask_extrapolated_beatstep")
)
# if we are processing batched inputs then we must need attention_masks
if not attention_masks_present and feature_extractor_output["beatsteps"].shape[0] > 1:
raise ValueError(
"attention_mask, attention_mask_beatsteps and attention_mask_extrapolated_beatstep must be present "
"for batched inputs! But one of them were not present."
)
# check for length mismatch between inputs_embeds, beatsteps and extrapolated_beatstep
if attention_masks_present:
# since we know about the number of examples in token_ids from attention_mask
if (
sum(feature_extractor_output["attention_mask"][:, 0] == 0)
!= feature_extractor_output["beatsteps"].shape[0]
or feature_extractor_output["beatsteps"].shape[0]
!= feature_extractor_output["extrapolated_beatstep"].shape[0]
):
raise ValueError(
"Length mistamtch between token_ids, beatsteps and extrapolated_beatstep! Found "
f"token_ids length - {token_ids.shape[0]}, beatsteps shape - {feature_extractor_output['beatsteps'].shape[0]} "
f"and extrapolated_beatsteps shape - {feature_extractor_output['extrapolated_beatstep'].shape[0]}"
)
if feature_extractor_output["attention_mask"].shape[0] != token_ids.shape[0]:
raise ValueError(
f"Found attention_mask of length - {feature_extractor_output['attention_mask'].shape[0]} but token_ids of length - {token_ids.shape[0]}"
)
else:
# if there is no attention mask present then it's surely a single example
if (
feature_extractor_output["beatsteps"].shape[0] != 1
or feature_extractor_output["extrapolated_beatstep"].shape[0] != 1
):
raise ValueError(
"Length mistamtch of beatsteps and extrapolated_beatstep! Since attention_mask is not present the number of examples must be 1, "
f"But found beatsteps length - {feature_extractor_output['beatsteps'].shape[0]}, extrapolated_beatsteps length - {feature_extractor_output['extrapolated_beatstep'].shape[0]}."
)
if attention_masks_present:
# check for zeros(since token_ids are seperated by zero arrays)
batch_idx = np.where(feature_extractor_output["attention_mask"][:, 0] == 0)[0]
else:
batch_idx = [token_ids.shape[0]]
notes_list = []
pretty_midi_objects_list = []
start_idx = 0
for index, end_idx in enumerate(batch_idx):
each_tokens_ids = token_ids[start_idx:end_idx]
# check where the whole example ended by searching for eos_token_id and getting the upper bound
each_tokens_ids = each_tokens_ids[:, : np.max(np.where(each_tokens_ids == int(self.eos_token))[1]) + 1]
beatsteps = feature_extractor_output["beatsteps"][index]
extrapolated_beatstep = feature_extractor_output["extrapolated_beatstep"][index]
# if attention mask is present then mask out real array/tensor
if attention_masks_present:
attention_mask_beatsteps = feature_extractor_output["attention_mask_beatsteps"][index]
attention_mask_extrapolated_beatstep = feature_extractor_output[
"attention_mask_extrapolated_beatstep"
][index]
beatsteps = beatsteps[: np.max(np.where(attention_mask_beatsteps == 1)[0]) + 1]
extrapolated_beatstep = extrapolated_beatstep[
: np.max(np.where(attention_mask_extrapolated_beatstep == 1)[0]) + 1
]
each_tokens_ids = to_numpy(each_tokens_ids)
beatsteps = to_numpy(beatsteps)
extrapolated_beatstep = to_numpy(extrapolated_beatstep)
pretty_midi_object = self.relative_batch_tokens_ids_to_midi(
tokens=each_tokens_ids,
beatstep=extrapolated_beatstep,
bars_per_batch=self.num_bars,
cutoff_time_idx=(self.num_bars + 1) * 4,
)
for note in pretty_midi_object.instruments[0].notes:
note.start += beatsteps[0]
note.end += beatsteps[0]
notes_list.append(note)
pretty_midi_objects_list.append(pretty_midi_object)
start_idx += end_idx + 1 # 1 represents the zero array
if return_midi:
return BatchEncoding({"notes": notes_list, "pretty_midi_objects": pretty_midi_objects_list})
return BatchEncoding({"notes": notes_list})
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/layoutxlm/tokenization_layoutxlm_fast.py | # coding=utf-8
# Copyright 2021 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License
""" Tokenization classes for LayoutXLM model."""
import os
from shutil import copyfile
from typing import Dict, List, Optional, Tuple, Union
from ...tokenization_utils import AddedToken
from ...tokenization_utils_base import (
BatchEncoding,
EncodedInput,
PreTokenizedInput,
TextInput,
TextInputPair,
TruncationStrategy,
)
from ...tokenization_utils_fast import PreTrainedTokenizerFast
from ...utils import PaddingStrategy, TensorType, add_end_docstrings, is_sentencepiece_available, logging
from ..xlm_roberta.tokenization_xlm_roberta_fast import (
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES,
PRETRAINED_VOCAB_FILES_MAP,
VOCAB_FILES_NAMES,
)
if is_sentencepiece_available():
from .tokenization_layoutxlm import LayoutXLMTokenizer
else:
LayoutXLMTokenizer = None
logger = logging.get_logger(__name__)
LAYOUTXLM_ENCODE_KWARGS_DOCSTRING = r"""
add_special_tokens (`bool`, *optional*, defaults to `True`):
Whether or not to encode the sequences with the special tokens relative to their model.
padding (`bool`, `str` or [`~file_utils.PaddingStrategy`], *optional*, defaults to `False`):
Activates and controls padding. Accepts the following values:
- `True` or `'longest'`: Pad to the longest sequence in the batch (or no padding if only a single
sequence if provided).
- `'max_length'`: Pad to a maximum length specified with the argument `max_length` or to the maximum
acceptable input length for the model if that argument is not provided.
- `False` or `'do_not_pad'` (default): No padding (i.e., can output a batch with sequences of different
lengths).
truncation (`bool`, `str` or [`~tokenization_utils_base.TruncationStrategy`], *optional*, defaults to `False`):
Activates and controls truncation. Accepts the following values:
- `True` or `'longest_first'`: Truncate to a maximum length specified with the argument `max_length` or
to the maximum acceptable input length for the model if that argument is not provided. This will
truncate token by token, removing a token from the longest sequence in the pair if a pair of
sequences (or a batch of pairs) is provided.
- `'only_first'`: Truncate to a maximum length specified with the argument `max_length` or to the
maximum acceptable input length for the model if that argument is not provided. This will only
truncate the first sequence of a pair if a pair of sequences (or a batch of pairs) is provided.
- `'only_second'`: Truncate to a maximum length specified with the argument `max_length` or to the
maximum acceptable input length for the model if that argument is not provided. This will only
truncate the second sequence of a pair if a pair of sequences (or a batch of pairs) is provided.
- `False` or `'do_not_truncate'` (default): No truncation (i.e., can output batch with sequence lengths
greater than the model maximum admissible input size).
max_length (`int`, *optional*):
Controls the maximum length to use by one of the truncation/padding parameters.
If left unset or set to `None`, this will use the predefined model maximum length if a maximum length
is required by one of the truncation/padding parameters. If the model has no specific maximum input
length (like XLNet) truncation/padding to a maximum length will be deactivated.
stride (`int`, *optional*, defaults to 0):
If set to a number along with `max_length`, the overflowing tokens returned when
`return_overflowing_tokens=True` will contain some tokens from the end of the truncated sequence
returned to provide some overlap between truncated and overflowing sequences. The value of this
argument defines the number of overlapping tokens.
pad_to_multiple_of (`int`, *optional*):
If set will pad the sequence to a multiple of the provided value. This is especially useful to enable
the use of Tensor Cores on NVIDIA hardware with compute capability `>= 7.5` (Volta).
return_tensors (`str` or [`~file_utils.TensorType`], *optional*):
If set, will return tensors instead of list of python integers. Acceptable values are:
- `'tf'`: Return TensorFlow `tf.constant` objects.
- `'pt'`: Return PyTorch `torch.Tensor` objects.
- `'np'`: Return Numpy `np.ndarray` objects.
return_token_type_ids (`bool`, *optional*):
Whether to return token type IDs. If left to the default, will return the token type IDs according to
the specific tokenizer's default, defined by the `return_outputs` attribute.
[What are token type IDs?](../glossary#token-type-ids)
return_attention_mask (`bool`, *optional*):
Whether to return the attention mask. If left to the default, will return the attention mask according
to the specific tokenizer's default, defined by the `return_outputs` attribute.
[What are attention masks?](../glossary#attention-mask)
return_overflowing_tokens (`bool`, *optional*, defaults to `False`):
Whether or not to return overflowing token sequences. If a pair of sequences of input ids (or a batch
of pairs) is provided with `truncation_strategy = longest_first` or `True`, an error is raised instead
of returning overflowing tokens.
return_special_tokens_mask (`bool`, *optional*, defaults to `False`):
Whether or not to return special tokens mask information.
return_offsets_mapping (`bool`, *optional*, defaults to `False`):
Whether or not to return `(char_start, char_end)` for each token.
This is only available on fast tokenizers inheriting from [`PreTrainedTokenizerFast`], if using
Python's tokenizer, this method will raise `NotImplementedError`.
return_length (`bool`, *optional*, defaults to `False`):
Whether or not to return the lengths of the encoded inputs.
verbose (`bool`, *optional*, defaults to `True`):
Whether or not to print more information and warnings.
**kwargs: passed to the `self.tokenize()` method
Return:
[`BatchEncoding`]: A [`BatchEncoding`] with the following fields:
- **input_ids** -- List of token ids to be fed to a model.
[What are input IDs?](../glossary#input-ids)
- **bbox** -- List of bounding boxes to be fed to a model.
- **token_type_ids** -- List of token type ids to be fed to a model (when `return_token_type_ids=True` or
if *"token_type_ids"* is in `self.model_input_names`).
[What are token type IDs?](../glossary#token-type-ids)
- **attention_mask** -- List of indices specifying which tokens should be attended to by the model (when
`return_attention_mask=True` or if *"attention_mask"* is in `self.model_input_names`).
[What are attention masks?](../glossary#attention-mask)
- **labels** -- List of labels to be fed to a model. (when `word_labels` is specified).
- **overflowing_tokens** -- List of overflowing tokens sequences (when a `max_length` is specified and
`return_overflowing_tokens=True`).
- **num_truncated_tokens** -- Number of tokens truncated (when a `max_length` is specified and
`return_overflowing_tokens=True`).
- **special_tokens_mask** -- List of 0s and 1s, with 1 specifying added special tokens and 0 specifying
regular sequence tokens (when `add_special_tokens=True` and `return_special_tokens_mask=True`).
- **length** -- The length of the inputs (when `return_length=True`).
"""
class LayoutXLMTokenizerFast(PreTrainedTokenizerFast):
"""
Construct a "fast" LayoutXLM tokenizer (backed by HuggingFace's *tokenizers* library). Adapted from
[`RobertaTokenizer`] and [`XLNetTokenizer`]. Based on
[BPE](https://huggingface.co/docs/tokenizers/python/latest/components.html?highlight=BPE#models).
This tokenizer inherits from [`PreTrainedTokenizerFast`] which contains most of the main methods. Users should
refer to this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
Path to the vocabulary file.
bos_token (`str`, *optional*, defaults to `"<s>"`):
The beginning of sequence token that was used during pretraining. Can be used a sequence classifier token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the beginning of
sequence. The token used is the `cls_token`.
</Tip>
eos_token (`str`, *optional*, defaults to `"</s>"`):
The end of sequence token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the end of sequence.
The token used is the `sep_token`.
</Tip>
sep_token (`str`, *optional*, defaults to `"</s>"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
cls_token (`str`, *optional*, defaults to `"<s>"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
mask_token (`str`, *optional*, defaults to `"<mask>"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
cls_token_box (`List[int]`, *optional*, defaults to `[0, 0, 0, 0]`):
The bounding box to use for the special [CLS] token.
sep_token_box (`List[int]`, *optional*, defaults to `[1000, 1000, 1000, 1000]`):
The bounding box to use for the special [SEP] token.
pad_token_box (`List[int]`, *optional*, defaults to `[0, 0, 0, 0]`):
The bounding box to use for the special [PAD] token.
pad_token_label (`int`, *optional*, defaults to -100):
The label to use for padding tokens. Defaults to -100, which is the `ignore_index` of PyTorch's
CrossEntropyLoss.
only_label_first_subword (`bool`, *optional*, defaults to `True`):
Whether or not to only label the first subword, in case word labels are provided.
additional_special_tokens (`List[str]`, *optional*, defaults to `["<s>NOTUSED", "</s>NOTUSED"]`):
Additional special tokens used by the tokenizer.
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
model_input_names = ["input_ids", "attention_mask"]
slow_tokenizer_class = LayoutXLMTokenizer
def __init__(
self,
vocab_file=None,
tokenizer_file=None,
bos_token="<s>",
eos_token="</s>",
sep_token="</s>",
cls_token="<s>",
unk_token="<unk>",
pad_token="<pad>",
mask_token="<mask>",
cls_token_box=[0, 0, 0, 0],
sep_token_box=[1000, 1000, 1000, 1000],
pad_token_box=[0, 0, 0, 0],
pad_token_label=-100,
only_label_first_subword=True,
**kwargs,
):
# Mask token behave like a normal word, i.e. include the space before it
mask_token = AddedToken(mask_token, lstrip=True, rstrip=False) if isinstance(mask_token, str) else mask_token
super().__init__(
vocab_file,
tokenizer_file=tokenizer_file,
bos_token=bos_token,
eos_token=eos_token,
sep_token=sep_token,
cls_token=cls_token,
unk_token=unk_token,
pad_token=pad_token,
mask_token=mask_token,
cls_token_box=cls_token_box,
sep_token_box=sep_token_box,
pad_token_box=pad_token_box,
pad_token_label=pad_token_label,
only_label_first_subword=only_label_first_subword,
**kwargs,
)
self.vocab_file = vocab_file
# additional properties
self.cls_token_box = cls_token_box
self.sep_token_box = sep_token_box
self.pad_token_box = pad_token_box
self.pad_token_label = pad_token_label
self.only_label_first_subword = only_label_first_subword
@property
def can_save_slow_tokenizer(self) -> bool:
return os.path.isfile(self.vocab_file) if self.vocab_file else False
@add_end_docstrings(LAYOUTXLM_ENCODE_KWARGS_DOCSTRING)
def __call__(
self,
text: Union[TextInput, PreTokenizedInput, List[TextInput], List[PreTokenizedInput]],
text_pair: Optional[Union[PreTokenizedInput, List[PreTokenizedInput]]] = None,
boxes: Union[List[List[int]], List[List[List[int]]]] = None,
word_labels: Optional[Union[List[int], List[List[int]]]] = None,
add_special_tokens: bool = True,
padding: Union[bool, str, PaddingStrategy] = False,
truncation: Union[bool, str, TruncationStrategy] = None,
max_length: Optional[int] = None,
stride: int = 0,
pad_to_multiple_of: Optional[int] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
return_token_type_ids: Optional[bool] = None,
return_attention_mask: Optional[bool] = None,
return_overflowing_tokens: bool = False,
return_special_tokens_mask: bool = False,
return_offsets_mapping: bool = False,
return_length: bool = False,
verbose: bool = True,
**kwargs,
) -> BatchEncoding:
"""
Main method to tokenize and prepare for the model one or several sequence(s) or one or several pair(s) of
sequences with word-level normalized bounding boxes and optional labels.
Args:
text (`str`, `List[str]`, `List[List[str]]`):
The sequence or batch of sequences to be encoded. Each sequence can be a string, a list of strings
(words of a single example or questions of a batch of examples) or a list of list of strings (batch of
words).
text_pair (`List[str]`, `List[List[str]]`):
The sequence or batch of sequences to be encoded. Each sequence should be a list of strings
(pretokenized string).
boxes (`List[List[int]]`, `List[List[List[int]]]`):
Word-level bounding boxes. Each bounding box should be normalized to be on a 0-1000 scale.
word_labels (`List[int]`, `List[List[int]]`, *optional*):
Word-level integer labels (for token classification tasks such as FUNSD, CORD).
"""
# Input type checking for clearer error
def _is_valid_text_input(t):
if isinstance(t, str):
# Strings are fine
return True
elif isinstance(t, (list, tuple)):
# List are fine as long as they are...
if len(t) == 0:
# ... empty
return True
elif isinstance(t[0], str):
# ... list of strings
return True
elif isinstance(t[0], (list, tuple)):
# ... list with an empty list or with a list of strings
return len(t[0]) == 0 or isinstance(t[0][0], str)
else:
return False
else:
return False
if text_pair is not None:
# in case text + text_pair are provided, text = questions, text_pair = words
if not _is_valid_text_input(text):
raise ValueError("text input must of type `str` (single example) or `List[str]` (batch of examples). ")
if not isinstance(text_pair, (list, tuple)):
raise ValueError(
"words must of type `List[str]` (single pretokenized example), "
"or `List[List[str]]` (batch of pretokenized examples)."
)
else:
# in case only text is provided => must be words
if not isinstance(text, (list, tuple)):
raise ValueError(
"Words must of type `List[str]` (single pretokenized example), "
"or `List[List[str]]` (batch of pretokenized examples)."
)
if text_pair is not None:
is_batched = isinstance(text, (list, tuple))
else:
is_batched = isinstance(text, (list, tuple)) and text and isinstance(text[0], (list, tuple))
words = text if text_pair is None else text_pair
if boxes is None:
raise ValueError("You must provide corresponding bounding boxes")
if is_batched:
if len(words) != len(boxes):
raise ValueError("You must provide words and boxes for an equal amount of examples")
for words_example, boxes_example in zip(words, boxes):
if len(words_example) != len(boxes_example):
raise ValueError("You must provide as many words as there are bounding boxes")
else:
if len(words) != len(boxes):
raise ValueError("You must provide as many words as there are bounding boxes")
if is_batched:
if text_pair is not None and len(text) != len(text_pair):
raise ValueError(
f"batch length of `text`: {len(text)} does not match batch length of `text_pair`:"
f" {len(text_pair)}."
)
batch_text_or_text_pairs = list(zip(text, text_pair)) if text_pair is not None else text
is_pair = bool(text_pair is not None)
return self.batch_encode_plus(
batch_text_or_text_pairs=batch_text_or_text_pairs,
is_pair=is_pair,
boxes=boxes,
word_labels=word_labels,
add_special_tokens=add_special_tokens,
padding=padding,
truncation=truncation,
max_length=max_length,
stride=stride,
pad_to_multiple_of=pad_to_multiple_of,
return_tensors=return_tensors,
return_token_type_ids=return_token_type_ids,
return_attention_mask=return_attention_mask,
return_overflowing_tokens=return_overflowing_tokens,
return_special_tokens_mask=return_special_tokens_mask,
return_offsets_mapping=return_offsets_mapping,
return_length=return_length,
verbose=verbose,
**kwargs,
)
else:
return self.encode_plus(
text=text,
text_pair=text_pair,
boxes=boxes,
word_labels=word_labels,
add_special_tokens=add_special_tokens,
padding=padding,
truncation=truncation,
max_length=max_length,
stride=stride,
pad_to_multiple_of=pad_to_multiple_of,
return_tensors=return_tensors,
return_token_type_ids=return_token_type_ids,
return_attention_mask=return_attention_mask,
return_overflowing_tokens=return_overflowing_tokens,
return_special_tokens_mask=return_special_tokens_mask,
return_offsets_mapping=return_offsets_mapping,
return_length=return_length,
verbose=verbose,
**kwargs,
)
def tokenize(self, text: str, pair: Optional[str] = None, add_special_tokens: bool = False, **kwargs) -> List[str]:
batched_input = [(text, pair)] if pair else [text]
encodings = self._tokenizer.encode_batch(
batched_input, add_special_tokens=add_special_tokens, is_pretokenized=False, **kwargs
)
return encodings[0].tokens
def _batch_encode_plus(
self,
batch_text_or_text_pairs: Union[
List[TextInput],
List[TextInputPair],
List[PreTokenizedInput],
],
is_pair: bool = None,
boxes: Optional[List[List[List[int]]]] = None,
word_labels: Optional[List[List[int]]] = None,
add_special_tokens: bool = True,
padding_strategy: PaddingStrategy = PaddingStrategy.DO_NOT_PAD,
truncation_strategy: TruncationStrategy = TruncationStrategy.DO_NOT_TRUNCATE,
max_length: Optional[int] = None,
stride: int = 0,
pad_to_multiple_of: Optional[int] = None,
return_tensors: Optional[str] = None,
return_token_type_ids: Optional[bool] = None,
return_attention_mask: Optional[bool] = None,
return_overflowing_tokens: bool = False,
return_special_tokens_mask: bool = False,
return_offsets_mapping: bool = False,
return_length: bool = False,
verbose: bool = True,
**kwargs,
) -> BatchEncoding:
if not isinstance(batch_text_or_text_pairs, list):
raise TypeError(f"batch_text_or_text_pairs has to be a list (got {type(batch_text_or_text_pairs)})")
# Set the truncation and padding strategy and restore the initial configuration
self.set_truncation_and_padding(
padding_strategy=padding_strategy,
truncation_strategy=truncation_strategy,
max_length=max_length,
stride=stride,
pad_to_multiple_of=pad_to_multiple_of,
)
if is_pair:
batch_text_or_text_pairs = [(text.split(), text_pair) for text, text_pair in batch_text_or_text_pairs]
encodings = self._tokenizer.encode_batch(
batch_text_or_text_pairs,
add_special_tokens=add_special_tokens,
is_pretokenized=True, # we set this to True as LayoutLMv2 always expects pretokenized inputs
)
# Convert encoding to dict
# `Tokens` has type: Tuple[
# List[Dict[str, List[List[int]]]] or List[Dict[str, 2D-Tensor]],
# List[EncodingFast]
# ]
# with nested dimensions corresponding to batch, overflows, sequence length
tokens_and_encodings = [
self._convert_encoding(
encoding=encoding,
return_token_type_ids=return_token_type_ids,
return_attention_mask=return_attention_mask,
return_overflowing_tokens=return_overflowing_tokens,
return_special_tokens_mask=return_special_tokens_mask,
return_offsets_mapping=True
if word_labels is not None
else return_offsets_mapping, # we use offsets to create the labels
return_length=return_length,
verbose=verbose,
)
for encoding in encodings
]
# Convert the output to have dict[list] from list[dict] and remove the additional overflows dimension
# From (variable) shape (batch, overflows, sequence length) to ~ (batch * overflows, sequence length)
# (we say ~ because the number of overflow varies with the example in the batch)
#
# To match each overflowing sample with the original sample in the batch
# we add an overflow_to_sample_mapping array (see below)
sanitized_tokens = {}
for key in tokens_and_encodings[0][0].keys():
stack = [e for item, _ in tokens_and_encodings for e in item[key]]
sanitized_tokens[key] = stack
sanitized_encodings = [e for _, item in tokens_and_encodings for e in item]
# If returning overflowing tokens, we need to return a mapping
# from the batch idx to the original sample
if return_overflowing_tokens:
overflow_to_sample_mapping = []
for i, (toks, _) in enumerate(tokens_and_encodings):
overflow_to_sample_mapping += [i] * len(toks["input_ids"])
sanitized_tokens["overflow_to_sample_mapping"] = overflow_to_sample_mapping
for input_ids in sanitized_tokens["input_ids"]:
self._eventual_warn_about_too_long_sequence(input_ids, max_length, verbose)
# create the token boxes
token_boxes = []
for batch_index in range(len(sanitized_tokens["input_ids"])):
if return_overflowing_tokens:
original_index = sanitized_tokens["overflow_to_sample_mapping"][batch_index]
else:
original_index = batch_index
token_boxes_example = []
for id, sequence_id, word_id in zip(
sanitized_tokens["input_ids"][batch_index],
sanitized_encodings[batch_index].sequence_ids,
sanitized_encodings[batch_index].word_ids,
):
if word_id is not None:
if is_pair and sequence_id == 0:
token_boxes_example.append(self.pad_token_box)
else:
token_boxes_example.append(boxes[original_index][word_id])
else:
if id == self.cls_token_id:
token_boxes_example.append(self.cls_token_box)
elif id == self.sep_token_id:
token_boxes_example.append(self.sep_token_box)
elif id == self.pad_token_id:
token_boxes_example.append(self.pad_token_box)
else:
raise ValueError("Id not recognized")
token_boxes.append(token_boxes_example)
sanitized_tokens["bbox"] = token_boxes
# optionally, create the labels
if word_labels is not None:
labels = []
for batch_index in range(len(sanitized_tokens["input_ids"])):
if return_overflowing_tokens:
original_index = sanitized_tokens["overflow_to_sample_mapping"][batch_index]
else:
original_index = batch_index
labels_example = []
for id, offset, word_id in zip(
sanitized_tokens["input_ids"][batch_index],
sanitized_tokens["offset_mapping"][batch_index],
sanitized_encodings[batch_index].word_ids,
):
if word_id is not None:
if self.only_label_first_subword:
if offset[0] == 0:
# Use the real label id for the first token of the word, and padding ids for the remaining tokens
labels_example.append(word_labels[original_index][word_id])
else:
labels_example.append(self.pad_token_label)
else:
labels_example.append(word_labels[original_index][word_id])
else:
labels_example.append(self.pad_token_label)
labels.append(labels_example)
sanitized_tokens["labels"] = labels
# finally, remove offsets if the user didn't want them
if not return_offsets_mapping:
del sanitized_tokens["offset_mapping"]
return BatchEncoding(sanitized_tokens, sanitized_encodings, tensor_type=return_tensors)
def _encode_plus(
self,
text: Union[TextInput, PreTokenizedInput],
text_pair: Optional[PreTokenizedInput] = None,
boxes: Optional[List[List[int]]] = None,
word_labels: Optional[List[int]] = None,
add_special_tokens: bool = True,
padding_strategy: PaddingStrategy = PaddingStrategy.DO_NOT_PAD,
truncation_strategy: TruncationStrategy = TruncationStrategy.DO_NOT_TRUNCATE,
max_length: Optional[int] = None,
stride: int = 0,
pad_to_multiple_of: Optional[int] = None,
return_tensors: Optional[bool] = None,
return_token_type_ids: Optional[bool] = None,
return_attention_mask: Optional[bool] = None,
return_overflowing_tokens: bool = False,
return_special_tokens_mask: bool = False,
return_offsets_mapping: bool = False,
return_length: bool = False,
verbose: bool = True,
**kwargs,
) -> BatchEncoding:
# make it a batched input
# 2 options:
# 1) only text, in case text must be a list of str
# 2) text + text_pair, in which case text = str and text_pair a list of str
batched_input = [(text, text_pair)] if text_pair else [text]
batched_boxes = [boxes]
batched_word_labels = [word_labels] if word_labels is not None else None
batched_output = self._batch_encode_plus(
batched_input,
is_pair=bool(text_pair is not None),
boxes=batched_boxes,
word_labels=batched_word_labels,
add_special_tokens=add_special_tokens,
padding_strategy=padding_strategy,
truncation_strategy=truncation_strategy,
max_length=max_length,
stride=stride,
pad_to_multiple_of=pad_to_multiple_of,
return_tensors=return_tensors,
return_token_type_ids=return_token_type_ids,
return_attention_mask=return_attention_mask,
return_overflowing_tokens=return_overflowing_tokens,
return_special_tokens_mask=return_special_tokens_mask,
return_offsets_mapping=return_offsets_mapping,
return_length=return_length,
verbose=verbose,
**kwargs,
)
# Return tensor is None, then we can remove the leading batch axis
# Overflowing tokens are returned as a batch of output so we keep them in this case
if return_tensors is None and not return_overflowing_tokens:
batched_output = BatchEncoding(
{
key: value[0] if len(value) > 0 and isinstance(value[0], list) else value
for key, value in batched_output.items()
},
batched_output.encodings,
)
self._eventual_warn_about_too_long_sequence(batched_output["input_ids"], max_length, verbose)
return batched_output
def _pad(
self,
encoded_inputs: Union[Dict[str, EncodedInput], BatchEncoding],
max_length: Optional[int] = None,
padding_strategy: PaddingStrategy = PaddingStrategy.DO_NOT_PAD,
pad_to_multiple_of: Optional[int] = None,
return_attention_mask: Optional[bool] = None,
) -> dict:
"""
Pad encoded inputs (on left/right and up to predefined length or max length in the batch)
Args:
encoded_inputs:
Dictionary of tokenized inputs (`List[int]`) or batch of tokenized inputs (`List[List[int]]`).
max_length: maximum length of the returned list and optionally padding length (see below).
Will truncate by taking into account the special tokens.
padding_strategy: PaddingStrategy to use for padding.
- PaddingStrategy.LONGEST Pad to the longest sequence in the batch
- PaddingStrategy.MAX_LENGTH: Pad to the max length (default)
- PaddingStrategy.DO_NOT_PAD: Do not pad
The tokenizer padding sides are defined in self.padding_side:
- 'left': pads on the left of the sequences
- 'right': pads on the right of the sequences
pad_to_multiple_of: (optional) Integer if set will pad the sequence to a multiple of the provided value.
This is especially useful to enable the use of Tensor Core on NVIDIA hardware with compute capability
`>= 7.5` (Volta).
return_attention_mask:
(optional) Set to False to avoid returning attention mask (default: set to model specifics)
"""
# Load from model defaults
if return_attention_mask is None:
return_attention_mask = "attention_mask" in self.model_input_names
required_input = encoded_inputs[self.model_input_names[0]]
if padding_strategy == PaddingStrategy.LONGEST:
max_length = len(required_input)
if max_length is not None and pad_to_multiple_of is not None and (max_length % pad_to_multiple_of != 0):
max_length = ((max_length // pad_to_multiple_of) + 1) * pad_to_multiple_of
needs_to_be_padded = padding_strategy != PaddingStrategy.DO_NOT_PAD and len(required_input) != max_length
# Initialize attention mask if not present.
if return_attention_mask and "attention_mask" not in encoded_inputs:
encoded_inputs["attention_mask"] = [1] * len(required_input)
if needs_to_be_padded:
difference = max_length - len(required_input)
if self.padding_side == "right":
if return_attention_mask:
encoded_inputs["attention_mask"] = encoded_inputs["attention_mask"] + [0] * difference
if "token_type_ids" in encoded_inputs:
encoded_inputs["token_type_ids"] = (
encoded_inputs["token_type_ids"] + [self.pad_token_type_id] * difference
)
if "bbox" in encoded_inputs:
encoded_inputs["bbox"] = encoded_inputs["bbox"] + [self.pad_token_box] * difference
if "labels" in encoded_inputs:
encoded_inputs["labels"] = encoded_inputs["labels"] + [self.pad_token_label] * difference
if "special_tokens_mask" in encoded_inputs:
encoded_inputs["special_tokens_mask"] = encoded_inputs["special_tokens_mask"] + [1] * difference
encoded_inputs[self.model_input_names[0]] = required_input + [self.pad_token_id] * difference
elif self.padding_side == "left":
if return_attention_mask:
encoded_inputs["attention_mask"] = [0] * difference + encoded_inputs["attention_mask"]
if "token_type_ids" in encoded_inputs:
encoded_inputs["token_type_ids"] = [self.pad_token_type_id] * difference + encoded_inputs[
"token_type_ids"
]
if "bbox" in encoded_inputs:
encoded_inputs["bbox"] = [self.pad_token_box] * difference + encoded_inputs["bbox"]
if "labels" in encoded_inputs:
encoded_inputs["labels"] = [self.pad_token_label] * difference + encoded_inputs["labels"]
if "special_tokens_mask" in encoded_inputs:
encoded_inputs["special_tokens_mask"] = [1] * difference + encoded_inputs["special_tokens_mask"]
encoded_inputs[self.model_input_names[0]] = [self.pad_token_id] * difference + required_input
else:
raise ValueError("Invalid padding strategy:" + str(self.padding_side))
return encoded_inputs
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. An XLM-RoBERTa sequence has the following format:
- single sequence: `<s> X </s>`
- pair of sequences: `<s> A </s></s> B </s>`
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
if token_ids_1 is None:
return [self.cls_token_id] + token_ids_0 + [self.sep_token_id]
cls = [self.cls_token_id]
sep = [self.sep_token_id]
return cls + token_ids_0 + sep + sep + token_ids_1 + sep
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. XLM-RoBERTa does
not make use of token type ids, therefore a list of zeros is returned.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of zeros.
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return len(cls + token_ids_0 + sep) * [0]
return len(cls + token_ids_0 + sep + sep + token_ids_1 + sep) * [0]
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not self.can_save_slow_tokenizer:
raise ValueError(
"Your fast tokenizer does not have the necessary information to save the vocabulary for a slow "
"tokenizer."
)
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory.")
return
out_vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
if os.path.abspath(self.vocab_file) != os.path.abspath(out_vocab_file):
copyfile(self.vocab_file, out_vocab_file)
return (out_vocab_file,)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/layoutxlm/__init__.py | # Copyright 2021 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_sentencepiece_available,
is_tokenizers_available,
is_torch_available,
is_vision_available,
)
_import_structure = {"processing_layoutxlm": ["LayoutXLMProcessor"]}
try:
if not is_sentencepiece_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["tokenization_layoutxlm"] = ["LayoutXLMTokenizer"]
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["tokenization_layoutxlm_fast"] = ["LayoutXLMTokenizerFast"]
if TYPE_CHECKING:
from .processing_layoutxlm import LayoutXLMProcessor
try:
if not is_sentencepiece_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .tokenization_layoutxlm import LayoutXLMTokenizer
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .tokenization_layoutxlm_fast import LayoutXLMTokenizerFast
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/layoutxlm/processing_layoutxlm.py | # coding=utf-8
# Copyright 2021 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Processor class for LayoutXLM.
"""
import warnings
from typing import List, Optional, Union
from ...processing_utils import ProcessorMixin
from ...tokenization_utils_base import BatchEncoding, PaddingStrategy, PreTokenizedInput, TextInput, TruncationStrategy
from ...utils import TensorType
class LayoutXLMProcessor(ProcessorMixin):
r"""
Constructs a LayoutXLM processor which combines a LayoutXLM image processor and a LayoutXLM tokenizer into a single
processor.
[`LayoutXLMProcessor`] offers all the functionalities you need to prepare data for the model.
It first uses [`LayoutLMv2ImageProcessor`] to resize document images to a fixed size, and optionally applies OCR to
get words and normalized bounding boxes. These are then provided to [`LayoutXLMTokenizer`] or
[`LayoutXLMTokenizerFast`], which turns the words and bounding boxes into token-level `input_ids`,
`attention_mask`, `token_type_ids`, `bbox`. Optionally, one can provide integer `word_labels`, which are turned
into token-level `labels` for token classification tasks (such as FUNSD, CORD).
Args:
image_processor (`LayoutLMv2ImageProcessor`, *optional*):
An instance of [`LayoutLMv2ImageProcessor`]. The image processor is a required input.
tokenizer (`LayoutXLMTokenizer` or `LayoutXLMTokenizerFast`, *optional*):
An instance of [`LayoutXLMTokenizer`] or [`LayoutXLMTokenizerFast`]. The tokenizer is a required input.
"""
attributes = ["image_processor", "tokenizer"]
image_processor_class = "LayoutLMv2ImageProcessor"
tokenizer_class = ("LayoutXLMTokenizer", "LayoutXLMTokenizerFast")
def __init__(self, image_processor=None, tokenizer=None, **kwargs):
if "feature_extractor" in kwargs:
warnings.warn(
"The `feature_extractor` argument is deprecated and will be removed in v5, use `image_processor`"
" instead.",
FutureWarning,
)
feature_extractor = kwargs.pop("feature_extractor")
image_processor = image_processor if image_processor is not None else feature_extractor
if image_processor is None:
raise ValueError("You need to specify an `image_processor`.")
if tokenizer is None:
raise ValueError("You need to specify a `tokenizer`.")
super().__init__(image_processor, tokenizer)
def __call__(
self,
images,
text: Union[TextInput, PreTokenizedInput, List[TextInput], List[PreTokenizedInput]] = None,
text_pair: Optional[Union[PreTokenizedInput, List[PreTokenizedInput]]] = None,
boxes: Union[List[List[int]], List[List[List[int]]]] = None,
word_labels: Optional[Union[List[int], List[List[int]]]] = None,
add_special_tokens: bool = True,
padding: Union[bool, str, PaddingStrategy] = False,
truncation: Union[bool, str, TruncationStrategy] = None,
max_length: Optional[int] = None,
stride: int = 0,
pad_to_multiple_of: Optional[int] = None,
return_token_type_ids: Optional[bool] = None,
return_attention_mask: Optional[bool] = None,
return_overflowing_tokens: bool = False,
return_special_tokens_mask: bool = False,
return_offsets_mapping: bool = False,
return_length: bool = False,
verbose: bool = True,
return_tensors: Optional[Union[str, TensorType]] = None,
**kwargs,
) -> BatchEncoding:
"""
This method first forwards the `images` argument to [`~LayoutLMv2ImagePrpcessor.__call__`]. In case
[`LayoutLMv2ImagePrpcessor`] was initialized with `apply_ocr` set to `True`, it passes the obtained words and
bounding boxes along with the additional arguments to [`~LayoutXLMTokenizer.__call__`] and returns the output,
together with resized `images`. In case [`LayoutLMv2ImagePrpcessor`] was initialized with `apply_ocr` set to
`False`, it passes the words (`text`/``text_pair`) and `boxes` specified by the user along with the additional
arguments to [`~LayoutXLMTokenizer.__call__`] and returns the output, together with resized `images``.
Please refer to the docstring of the above two methods for more information.
"""
# verify input
if self.image_processor.apply_ocr and (boxes is not None):
raise ValueError(
"You cannot provide bounding boxes "
"if you initialized the image processor with apply_ocr set to True."
)
if self.image_processor.apply_ocr and (word_labels is not None):
raise ValueError(
"You cannot provide word labels if you initialized the image processor with apply_ocr set to True."
)
if return_overflowing_tokens is True and return_offsets_mapping is False:
raise ValueError("You cannot return overflowing tokens without returning the offsets mapping.")
# first, apply the image processor
features = self.image_processor(images=images, return_tensors=return_tensors)
# second, apply the tokenizer
if text is not None and self.image_processor.apply_ocr and text_pair is None:
if isinstance(text, str):
text = [text] # add batch dimension (as the image processor always adds a batch dimension)
text_pair = features["words"]
encoded_inputs = self.tokenizer(
text=text if text is not None else features["words"],
text_pair=text_pair if text_pair is not None else None,
boxes=boxes if boxes is not None else features["boxes"],
word_labels=word_labels,
add_special_tokens=add_special_tokens,
padding=padding,
truncation=truncation,
max_length=max_length,
stride=stride,
pad_to_multiple_of=pad_to_multiple_of,
return_token_type_ids=return_token_type_ids,
return_attention_mask=return_attention_mask,
return_overflowing_tokens=return_overflowing_tokens,
return_special_tokens_mask=return_special_tokens_mask,
return_offsets_mapping=return_offsets_mapping,
return_length=return_length,
verbose=verbose,
return_tensors=return_tensors,
**kwargs,
)
# add pixel values
images = features.pop("pixel_values")
if return_overflowing_tokens is True:
images = self.get_overflowing_images(images, encoded_inputs["overflow_to_sample_mapping"])
encoded_inputs["image"] = images
return encoded_inputs
def get_overflowing_images(self, images, overflow_to_sample_mapping):
# in case there's an overflow, ensure each `input_ids` sample is mapped to its corresponding image
images_with_overflow = []
for sample_idx in overflow_to_sample_mapping:
images_with_overflow.append(images[sample_idx])
if len(images_with_overflow) != len(overflow_to_sample_mapping):
raise ValueError(
"Expected length of images to be the same as the length of `overflow_to_sample_mapping`, but got"
f" {len(images_with_overflow)} and {len(overflow_to_sample_mapping)}"
)
return images_with_overflow
def batch_decode(self, *args, **kwargs):
"""
This method forwards all its arguments to PreTrainedTokenizer's [`~PreTrainedTokenizer.batch_decode`]. Please
refer to the docstring of this method for more information.
"""
return self.tokenizer.batch_decode(*args, **kwargs)
def decode(self, *args, **kwargs):
"""
This method forwards all its arguments to PreTrainedTokenizer's [`~PreTrainedTokenizer.decode`]. Please refer
to the docstring of this method for more information.
"""
return self.tokenizer.decode(*args, **kwargs)
@property
def model_input_names(self):
return ["input_ids", "bbox", "attention_mask", "image"]
@property
def feature_extractor_class(self):
warnings.warn(
"`feature_extractor_class` is deprecated and will be removed in v5. Use `image_processor_class` instead.",
FutureWarning,
)
return self.image_processor_class
@property
def feature_extractor(self):
warnings.warn(
"`feature_extractor` is deprecated and will be removed in v5. Use `image_processor` instead.",
FutureWarning,
)
return self.image_processor
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/layoutxlm/tokenization_layoutxlm.py | # coding=utf-8
# Copyright 2021 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License
""" Tokenization classes for LayoutXLM model."""
import os
from shutil import copyfile
from typing import Any, Dict, List, Optional, Tuple, Union
import sentencepiece as spm
from ...tokenization_utils import AddedToken, PreTrainedTokenizer
from ...tokenization_utils_base import (
BatchEncoding,
EncodedInput,
PreTokenizedInput,
TextInput,
TextInputPair,
TruncationStrategy,
)
from ...utils import PaddingStrategy, TensorType, add_end_docstrings, logging
from ..xlm_roberta.tokenization_xlm_roberta import (
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES,
PRETRAINED_VOCAB_FILES_MAP,
SPIECE_UNDERLINE,
VOCAB_FILES_NAMES,
)
logger = logging.get_logger(__name__)
LAYOUTXLM_ENCODE_KWARGS_DOCSTRING = r"""
add_special_tokens (`bool`, *optional*, defaults to `True`):
Whether or not to encode the sequences with the special tokens relative to their model.
padding (`bool`, `str` or [`~file_utils.PaddingStrategy`], *optional*, defaults to `False`):
Activates and controls padding. Accepts the following values:
- `True` or `'longest'`: Pad to the longest sequence in the batch (or no padding if only a single
sequence if provided).
- `'max_length'`: Pad to a maximum length specified with the argument `max_length` or to the maximum
acceptable input length for the model if that argument is not provided.
- `False` or `'do_not_pad'` (default): No padding (i.e., can output a batch with sequences of different
lengths).
truncation (`bool`, `str` or [`~tokenization_utils_base.TruncationStrategy`], *optional*, defaults to `False`):
Activates and controls truncation. Accepts the following values:
- `True` or `'longest_first'`: Truncate to a maximum length specified with the argument `max_length` or
to the maximum acceptable input length for the model if that argument is not provided. This will
truncate token by token, removing a token from the longest sequence in the pair if a pair of
sequences (or a batch of pairs) is provided.
- `'only_first'`: Truncate to a maximum length specified with the argument `max_length` or to the
maximum acceptable input length for the model if that argument is not provided. This will only
truncate the first sequence of a pair if a pair of sequences (or a batch of pairs) is provided.
- `'only_second'`: Truncate to a maximum length specified with the argument `max_length` or to the
maximum acceptable input length for the model if that argument is not provided. This will only
truncate the second sequence of a pair if a pair of sequences (or a batch of pairs) is provided.
- `False` or `'do_not_truncate'` (default): No truncation (i.e., can output batch with sequence lengths
greater than the model maximum admissible input size).
max_length (`int`, *optional*):
Controls the maximum length to use by one of the truncation/padding parameters.
If left unset or set to `None`, this will use the predefined model maximum length if a maximum length
is required by one of the truncation/padding parameters. If the model has no specific maximum input
length (like XLNet) truncation/padding to a maximum length will be deactivated.
stride (`int`, *optional*, defaults to 0):
If set to a number along with `max_length`, the overflowing tokens returned when
`return_overflowing_tokens=True` will contain some tokens from the end of the truncated sequence
returned to provide some overlap between truncated and overflowing sequences. The value of this
argument defines the number of overlapping tokens.
pad_to_multiple_of (`int`, *optional*):
If set will pad the sequence to a multiple of the provided value. This is especially useful to enable
the use of Tensor Cores on NVIDIA hardware with compute capability `>= 7.5` (Volta).
return_tensors (`str` or [`~file_utils.TensorType`], *optional*):
If set, will return tensors instead of list of python integers. Acceptable values are:
- `'tf'`: Return TensorFlow `tf.constant` objects.
- `'pt'`: Return PyTorch `torch.Tensor` objects.
- `'np'`: Return Numpy `np.ndarray` objects.
return_token_type_ids (`bool`, *optional*):
Whether to return token type IDs. If left to the default, will return the token type IDs according to
the specific tokenizer's default, defined by the `return_outputs` attribute.
[What are token type IDs?](../glossary#token-type-ids)
return_attention_mask (`bool`, *optional*):
Whether to return the attention mask. If left to the default, will return the attention mask according
to the specific tokenizer's default, defined by the `return_outputs` attribute.
[What are attention masks?](../glossary#attention-mask)
return_overflowing_tokens (`bool`, *optional*, defaults to `False`):
Whether or not to return overflowing token sequences. If a pair of sequences of input ids (or a batch
of pairs) is provided with `truncation_strategy = longest_first` or `True`, an error is raised instead
of returning overflowing tokens.
return_special_tokens_mask (`bool`, *optional*, defaults to `False`):
Whether or not to return special tokens mask information.
return_offsets_mapping (`bool`, *optional*, defaults to `False`):
Whether or not to return `(char_start, char_end)` for each token.
This is only available on fast tokenizers inheriting from [`PreTrainedTokenizerFast`], if using
Python's tokenizer, this method will raise `NotImplementedError`.
return_length (`bool`, *optional*, defaults to `False`):
Whether or not to return the lengths of the encoded inputs.
verbose (`bool`, *optional*, defaults to `True`):
Whether or not to print more information and warnings.
**kwargs: passed to the `self.tokenize()` method
Return:
[`BatchEncoding`]: A [`BatchEncoding`] with the following fields:
- **input_ids** -- List of token ids to be fed to a model.
[What are input IDs?](../glossary#input-ids)
- **bbox** -- List of bounding boxes to be fed to a model.
- **token_type_ids** -- List of token type ids to be fed to a model (when `return_token_type_ids=True` or
if *"token_type_ids"* is in `self.model_input_names`).
[What are token type IDs?](../glossary#token-type-ids)
- **attention_mask** -- List of indices specifying which tokens should be attended to by the model (when
`return_attention_mask=True` or if *"attention_mask"* is in `self.model_input_names`).
[What are attention masks?](../glossary#attention-mask)
- **labels** -- List of labels to be fed to a model. (when `word_labels` is specified).
- **overflowing_tokens** -- List of overflowing tokens sequences (when a `max_length` is specified and
`return_overflowing_tokens=True`).
- **num_truncated_tokens** -- Number of tokens truncated (when a `max_length` is specified and
`return_overflowing_tokens=True`).
- **special_tokens_mask** -- List of 0s and 1s, with 1 specifying added special tokens and 0 specifying
regular sequence tokens (when `add_special_tokens=True` and `return_special_tokens_mask=True`).
- **length** -- The length of the inputs (when `return_length=True`).
"""
class LayoutXLMTokenizer(PreTrainedTokenizer):
"""
Adapted from [`RobertaTokenizer`] and [`XLNetTokenizer`]. Based on
[SentencePiece](https://github.com/google/sentencepiece).
This tokenizer inherits from [`PreTrainedTokenizer`] which contains most of the main methods. Users should refer to
this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
Path to the vocabulary file.
bos_token (`str`, *optional*, defaults to `"<s>"`):
The beginning of sequence token that was used during pretraining. Can be used a sequence classifier token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the beginning of
sequence. The token used is the `cls_token`.
</Tip>
eos_token (`str`, *optional*, defaults to `"</s>"`):
The end of sequence token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the end of sequence.
The token used is the `sep_token`.
</Tip>
sep_token (`str`, *optional*, defaults to `"</s>"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
cls_token (`str`, *optional*, defaults to `"<s>"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
mask_token (`str`, *optional*, defaults to `"<mask>"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
cls_token_box (`List[int]`, *optional*, defaults to `[0, 0, 0, 0]`):
The bounding box to use for the special [CLS] token.
sep_token_box (`List[int]`, *optional*, defaults to `[1000, 1000, 1000, 1000]`):
The bounding box to use for the special [SEP] token.
pad_token_box (`List[int]`, *optional*, defaults to `[0, 0, 0, 0]`):
The bounding box to use for the special [PAD] token.
pad_token_label (`int`, *optional*, defaults to -100):
The label to use for padding tokens. Defaults to -100, which is the `ignore_index` of PyTorch's
CrossEntropyLoss.
only_label_first_subword (`bool`, *optional*, defaults to `True`):
Whether or not to only label the first subword, in case word labels are provided.
sp_model_kwargs (`dict`, *optional*):
Will be passed to the `SentencePieceProcessor.__init__()` method. The [Python wrapper for
SentencePiece](https://github.com/google/sentencepiece/tree/master/python) can be used, among other things,
to set:
- `enable_sampling`: Enable subword regularization.
- `nbest_size`: Sampling parameters for unigram. Invalid for BPE-Dropout.
- `nbest_size = {0,1}`: No sampling is performed.
- `nbest_size > 1`: samples from the nbest_size results.
- `nbest_size < 0`: assuming that nbest_size is infinite and samples from the all hypothesis (lattice)
using forward-filtering-and-backward-sampling algorithm.
- `alpha`: Smoothing parameter for unigram sampling, and dropout probability of merge operations for
BPE-dropout.
Attributes:
sp_model (`SentencePieceProcessor`):
The *SentencePiece* processor that is used for every conversion (string, tokens and IDs).
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
model_input_names = ["input_ids", "attention_mask"]
def __init__(
self,
vocab_file,
bos_token="<s>",
eos_token="</s>",
sep_token="</s>",
cls_token="<s>",
unk_token="<unk>",
pad_token="<pad>",
mask_token="<mask>",
cls_token_box=[0, 0, 0, 0],
sep_token_box=[1000, 1000, 1000, 1000],
pad_token_box=[0, 0, 0, 0],
pad_token_label=-100,
only_label_first_subword=True,
sp_model_kwargs: Optional[Dict[str, Any]] = None,
**kwargs,
) -> None:
# Mask token behave like a normal word, i.e. include the space before it
mask_token = AddedToken(mask_token, lstrip=True, special=True) if isinstance(mask_token, str) else mask_token
self.sp_model_kwargs = {} if sp_model_kwargs is None else sp_model_kwargs
self.sp_model = spm.SentencePieceProcessor(**self.sp_model_kwargs)
self.sp_model.Load(str(vocab_file))
self.vocab_file = vocab_file
# Original fairseq vocab and spm vocab must be "aligned":
# Vocab | 0 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9
# -------- | ------- | ------- | ------ | ------- | --- | --- | --- | ----- | ----- | ----
# fairseq | '<s>' | '<pad>' | '</s>' | '<unk>' | ',' | '.' | '▁' | 's' | '▁de' | '-'
# spm | '<unk>' | '<s>' | '</s>' | ',' | '.' | '▁' | 's' | '▁de' | '-' | '▁a'
# Mimic fairseq token-to-id alignment for the first 4 token
self.fairseq_tokens_to_ids = {"<s>": 0, "<pad>": 1, "</s>": 2, "<unk>": 3}
# The first "real" token "," has position 4 in the original fairseq vocab and position 3 in the spm vocab
self.fairseq_offset = 1
self.fairseq_tokens_to_ids["<mask>"] = len(self.sp_model) + self.fairseq_offset
self.fairseq_ids_to_tokens = {v: k for k, v in self.fairseq_tokens_to_ids.items()}
# additional properties
self.cls_token_box = cls_token_box
self.sep_token_box = sep_token_box
self.pad_token_box = pad_token_box
self.pad_token_label = pad_token_label
self.only_label_first_subword = only_label_first_subword
super().__init__(
bos_token=bos_token,
eos_token=eos_token,
unk_token=unk_token,
sep_token=sep_token,
cls_token=cls_token,
pad_token=pad_token,
mask_token=mask_token,
cls_token_box=cls_token_box,
sep_token_box=sep_token_box,
pad_token_box=pad_token_box,
pad_token_label=pad_token_label,
only_label_first_subword=only_label_first_subword,
sp_model_kwargs=self.sp_model_kwargs,
**kwargs,
)
def __getstate__(self):
state = self.__dict__.copy()
state["sp_model"] = None
state["sp_model_proto"] = self.sp_model.serialized_model_proto()
return state
def __setstate__(self, d):
self.__dict__ = d
# for backward compatibility
if not hasattr(self, "sp_model_kwargs"):
self.sp_model_kwargs = {}
self.sp_model = spm.SentencePieceProcessor(**self.sp_model_kwargs)
self.sp_model.LoadFromSerializedProto(self.sp_model_proto)
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. An XLM-RoBERTa sequence has the following format:
- single sequence: `<s> X </s>`
- pair of sequences: `<s> A </s></s> B </s>`
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
if token_ids_1 is None:
return [self.cls_token_id] + token_ids_0 + [self.sep_token_id]
cls = [self.cls_token_id]
sep = [self.sep_token_id]
return cls + token_ids_0 + sep + sep + token_ids_1 + sep
def get_special_tokens_mask(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieve sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer `prepare_for_model` method.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
already_has_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
`List[int]`: A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
return super().get_special_tokens_mask(
token_ids_0=token_ids_0, token_ids_1=token_ids_1, already_has_special_tokens=True
)
if token_ids_1 is None:
return [1] + ([0] * len(token_ids_0)) + [1]
return [1] + ([0] * len(token_ids_0)) + [1, 1] + ([0] * len(token_ids_1)) + [1]
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. XLM-RoBERTa does
not make use of token type ids, therefore a list of zeros is returned.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of zeros.
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return len(cls + token_ids_0 + sep) * [0]
return len(cls + token_ids_0 + sep + sep + token_ids_1 + sep) * [0]
@property
def vocab_size(self):
return len(self.sp_model) + self.fairseq_offset + 1 # Add the <mask> token
def get_vocab(self):
vocab = {self.convert_ids_to_tokens(i): i for i in range(self.vocab_size)}
vocab.update(self.added_tokens_encoder)
return vocab
def _tokenize(self, text: str) -> List[str]:
return self.sp_model.encode(text, out_type=str)
def _convert_token_to_id(self, token):
"""Converts a token (str) in an id using the vocab."""
if token in self.fairseq_tokens_to_ids:
return self.fairseq_tokens_to_ids[token]
spm_id = self.sp_model.PieceToId(token)
# Need to return unknown token if the SP model returned 0
return spm_id + self.fairseq_offset if spm_id else self.unk_token_id
def _convert_id_to_token(self, index):
"""Converts an index (integer) in a token (str) using the vocab."""
if index in self.fairseq_ids_to_tokens:
return self.fairseq_ids_to_tokens[index]
return self.sp_model.IdToPiece(index - self.fairseq_offset)
def convert_tokens_to_string(self, tokens):
"""Converts a sequence of tokens (strings for sub-words) in a single string."""
out_string = "".join(tokens).replace(SPIECE_UNDERLINE, " ").strip()
return out_string
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory")
return
out_vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
if os.path.abspath(self.vocab_file) != os.path.abspath(out_vocab_file) and os.path.isfile(self.vocab_file):
copyfile(self.vocab_file, out_vocab_file)
elif not os.path.isfile(self.vocab_file):
with open(out_vocab_file, "wb") as fi:
content_spiece_model = self.sp_model.serialized_model_proto()
fi.write(content_spiece_model)
return (out_vocab_file,)
@add_end_docstrings(LAYOUTXLM_ENCODE_KWARGS_DOCSTRING)
def __call__(
self,
text: Union[TextInput, PreTokenizedInput, List[TextInput], List[PreTokenizedInput]],
text_pair: Optional[Union[PreTokenizedInput, List[PreTokenizedInput]]] = None,
boxes: Union[List[List[int]], List[List[List[int]]]] = None,
word_labels: Optional[Union[List[int], List[List[int]]]] = None,
add_special_tokens: bool = True,
padding: Union[bool, str, PaddingStrategy] = False,
truncation: Union[bool, str, TruncationStrategy] = None,
max_length: Optional[int] = None,
stride: int = 0,
pad_to_multiple_of: Optional[int] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
return_token_type_ids: Optional[bool] = None,
return_attention_mask: Optional[bool] = None,
return_overflowing_tokens: bool = False,
return_special_tokens_mask: bool = False,
return_offsets_mapping: bool = False,
return_length: bool = False,
verbose: bool = True,
**kwargs,
) -> BatchEncoding:
"""
Main method to tokenize and prepare for the model one or several sequence(s) or one or several pair(s) of
sequences with word-level normalized bounding boxes and optional labels.
Args:
text (`str`, `List[str]`, `List[List[str]]`):
The sequence or batch of sequences to be encoded. Each sequence can be a string, a list of strings
(words of a single example or questions of a batch of examples) or a list of list of strings (batch of
words).
text_pair (`List[str]`, `List[List[str]]`):
The sequence or batch of sequences to be encoded. Each sequence should be a list of strings
(pretokenized string).
boxes (`List[List[int]]`, `List[List[List[int]]]`):
Word-level bounding boxes. Each bounding box should be normalized to be on a 0-1000 scale.
word_labels (`List[int]`, `List[List[int]]`, *optional*):
Word-level integer labels (for token classification tasks such as FUNSD, CORD).
"""
# Input type checking for clearer error
def _is_valid_text_input(t):
if isinstance(t, str):
# Strings are fine
return True
elif isinstance(t, (list, tuple)):
# List are fine as long as they are...
if len(t) == 0:
# ... empty
return True
elif isinstance(t[0], str):
# ... list of strings
return True
elif isinstance(t[0], (list, tuple)):
# ... list with an empty list or with a list of strings
return len(t[0]) == 0 or isinstance(t[0][0], str)
else:
return False
else:
return False
if text_pair is not None:
# in case text + text_pair are provided, text = questions, text_pair = words
if not _is_valid_text_input(text):
raise ValueError("text input must of type `str` (single example) or `List[str]` (batch of examples). ")
if not isinstance(text_pair, (list, tuple)):
raise ValueError(
"words must of type `List[str]` (single pretokenized example), "
"or `List[List[str]]` (batch of pretokenized examples)."
)
else:
# in case only text is provided => must be words
if not isinstance(text, (list, tuple)):
raise ValueError(
"Words must of type `List[str]` (single pretokenized example), "
"or `List[List[str]]` (batch of pretokenized examples)."
)
if text_pair is not None:
is_batched = isinstance(text, (list, tuple))
else:
is_batched = isinstance(text, (list, tuple)) and text and isinstance(text[0], (list, tuple))
words = text if text_pair is None else text_pair
if boxes is None:
raise ValueError("You must provide corresponding bounding boxes")
if is_batched:
if len(words) != len(boxes):
raise ValueError("You must provide words and boxes for an equal amount of examples")
for words_example, boxes_example in zip(words, boxes):
if len(words_example) != len(boxes_example):
raise ValueError("You must provide as many words as there are bounding boxes")
else:
if len(words) != len(boxes):
raise ValueError("You must provide as many words as there are bounding boxes")
if is_batched:
if text_pair is not None and len(text) != len(text_pair):
raise ValueError(
f"batch length of `text`: {len(text)} does not match batch length of `text_pair`:"
f" {len(text_pair)}."
)
batch_text_or_text_pairs = list(zip(text, text_pair)) if text_pair is not None else text
is_pair = bool(text_pair is not None)
return self.batch_encode_plus(
batch_text_or_text_pairs=batch_text_or_text_pairs,
is_pair=is_pair,
boxes=boxes,
word_labels=word_labels,
add_special_tokens=add_special_tokens,
padding=padding,
truncation=truncation,
max_length=max_length,
stride=stride,
pad_to_multiple_of=pad_to_multiple_of,
return_tensors=return_tensors,
return_token_type_ids=return_token_type_ids,
return_attention_mask=return_attention_mask,
return_overflowing_tokens=return_overflowing_tokens,
return_special_tokens_mask=return_special_tokens_mask,
return_offsets_mapping=return_offsets_mapping,
return_length=return_length,
verbose=verbose,
**kwargs,
)
else:
return self.encode_plus(
text=text,
text_pair=text_pair,
boxes=boxes,
word_labels=word_labels,
add_special_tokens=add_special_tokens,
padding=padding,
truncation=truncation,
max_length=max_length,
stride=stride,
pad_to_multiple_of=pad_to_multiple_of,
return_tensors=return_tensors,
return_token_type_ids=return_token_type_ids,
return_attention_mask=return_attention_mask,
return_overflowing_tokens=return_overflowing_tokens,
return_special_tokens_mask=return_special_tokens_mask,
return_offsets_mapping=return_offsets_mapping,
return_length=return_length,
verbose=verbose,
**kwargs,
)
def _batch_encode_plus(
self,
batch_text_or_text_pairs: Union[
List[TextInput],
List[TextInputPair],
List[PreTokenizedInput],
],
is_pair: bool = None,
boxes: Optional[List[List[List[int]]]] = None,
word_labels: Optional[List[List[int]]] = None,
add_special_tokens: bool = True,
padding_strategy: PaddingStrategy = PaddingStrategy.DO_NOT_PAD,
truncation_strategy: TruncationStrategy = TruncationStrategy.DO_NOT_TRUNCATE,
max_length: Optional[int] = None,
stride: int = 0,
pad_to_multiple_of: Optional[int] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
return_token_type_ids: Optional[bool] = None,
return_attention_mask: Optional[bool] = None,
return_overflowing_tokens: bool = False,
return_special_tokens_mask: bool = False,
return_offsets_mapping: bool = False,
return_length: bool = False,
verbose: bool = True,
**kwargs,
) -> BatchEncoding:
if return_offsets_mapping:
raise NotImplementedError(
"return_offset_mapping is not available when using Python tokenizers. "
"To use this feature, change your tokenizer to one deriving from "
"transformers.PreTrainedTokenizerFast."
)
batch_outputs = self._batch_prepare_for_model(
batch_text_or_text_pairs=batch_text_or_text_pairs,
is_pair=is_pair,
boxes=boxes,
word_labels=word_labels,
add_special_tokens=add_special_tokens,
padding_strategy=padding_strategy,
truncation_strategy=truncation_strategy,
max_length=max_length,
stride=stride,
pad_to_multiple_of=pad_to_multiple_of,
return_attention_mask=return_attention_mask,
return_token_type_ids=return_token_type_ids,
return_overflowing_tokens=return_overflowing_tokens,
return_special_tokens_mask=return_special_tokens_mask,
return_length=return_length,
return_tensors=return_tensors,
verbose=verbose,
)
return BatchEncoding(batch_outputs)
@add_end_docstrings(LAYOUTXLM_ENCODE_KWARGS_DOCSTRING)
def _batch_prepare_for_model(
self,
batch_text_or_text_pairs,
is_pair: bool = None,
boxes: Optional[List[List[int]]] = None,
word_labels: Optional[List[List[int]]] = None,
add_special_tokens: bool = True,
padding_strategy: PaddingStrategy = PaddingStrategy.DO_NOT_PAD,
truncation_strategy: TruncationStrategy = TruncationStrategy.DO_NOT_TRUNCATE,
max_length: Optional[int] = None,
stride: int = 0,
pad_to_multiple_of: Optional[int] = None,
return_tensors: Optional[str] = None,
return_token_type_ids: Optional[bool] = None,
return_attention_mask: Optional[bool] = None,
return_overflowing_tokens: bool = False,
return_special_tokens_mask: bool = False,
return_length: bool = False,
verbose: bool = True,
) -> BatchEncoding:
"""
Prepares a sequence of input id, or a pair of sequences of inputs ids so that it can be used by the model. It
adds special tokens, truncates sequences if overflowing while taking into account the special tokens and
manages a moving window (with user defined stride) for overflowing tokens
Args:
batch_ids_pairs: list of tokenized input ids or input ids pairs
"""
batch_outputs = {}
for idx, example in enumerate(zip(batch_text_or_text_pairs, boxes)):
batch_text_or_text_pair, boxes_example = example
outputs = self.prepare_for_model(
batch_text_or_text_pair[0] if is_pair else batch_text_or_text_pair,
batch_text_or_text_pair[1] if is_pair else None,
boxes_example,
word_labels=word_labels[idx] if word_labels is not None else None,
add_special_tokens=add_special_tokens,
padding=PaddingStrategy.DO_NOT_PAD.value, # we pad in batch afterward
truncation=truncation_strategy.value,
max_length=max_length,
stride=stride,
pad_to_multiple_of=None, # we pad in batch afterward
return_attention_mask=False, # we pad in batch afterward
return_token_type_ids=return_token_type_ids,
return_overflowing_tokens=return_overflowing_tokens,
return_special_tokens_mask=return_special_tokens_mask,
return_length=return_length,
return_tensors=None, # We convert the whole batch to tensors at the end
prepend_batch_axis=False,
verbose=verbose,
)
for key, value in outputs.items():
if key not in batch_outputs:
batch_outputs[key] = []
batch_outputs[key].append(value)
batch_outputs = self.pad(
batch_outputs,
padding=padding_strategy.value,
max_length=max_length,
pad_to_multiple_of=pad_to_multiple_of,
return_attention_mask=return_attention_mask,
)
batch_outputs = BatchEncoding(batch_outputs, tensor_type=return_tensors)
return batch_outputs
def _encode_plus(
self,
text: Union[TextInput, PreTokenizedInput],
text_pair: Optional[PreTokenizedInput] = None,
boxes: Optional[List[List[int]]] = None,
word_labels: Optional[List[int]] = None,
add_special_tokens: bool = True,
padding_strategy: PaddingStrategy = PaddingStrategy.DO_NOT_PAD,
truncation_strategy: TruncationStrategy = TruncationStrategy.DO_NOT_TRUNCATE,
max_length: Optional[int] = None,
stride: int = 0,
pad_to_multiple_of: Optional[int] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
return_token_type_ids: Optional[bool] = None,
return_attention_mask: Optional[bool] = None,
return_overflowing_tokens: bool = False,
return_special_tokens_mask: bool = False,
return_offsets_mapping: bool = False,
return_length: bool = False,
verbose: bool = True,
**kwargs,
) -> BatchEncoding:
if return_offsets_mapping:
raise NotImplementedError(
"return_offset_mapping is not available when using Python tokenizers. "
"To use this feature, change your tokenizer to one deriving from "
"transformers.PreTrainedTokenizerFast. "
"More information on available tokenizers at "
"https://github.com/huggingface/transformers/pull/2674"
)
return self.prepare_for_model(
text=text,
text_pair=text_pair,
boxes=boxes,
word_labels=word_labels,
add_special_tokens=add_special_tokens,
padding=padding_strategy.value,
truncation=truncation_strategy.value,
max_length=max_length,
stride=stride,
pad_to_multiple_of=pad_to_multiple_of,
return_tensors=return_tensors,
prepend_batch_axis=True,
return_attention_mask=return_attention_mask,
return_token_type_ids=return_token_type_ids,
return_overflowing_tokens=return_overflowing_tokens,
return_special_tokens_mask=return_special_tokens_mask,
return_length=return_length,
verbose=verbose,
)
@add_end_docstrings(LAYOUTXLM_ENCODE_KWARGS_DOCSTRING)
def prepare_for_model(
self,
text: Union[TextInput, PreTokenizedInput],
text_pair: Optional[PreTokenizedInput] = None,
boxes: Optional[List[List[int]]] = None,
word_labels: Optional[List[int]] = None,
add_special_tokens: bool = True,
padding: Union[bool, str, PaddingStrategy] = False,
truncation: Union[bool, str, TruncationStrategy] = None,
max_length: Optional[int] = None,
stride: int = 0,
pad_to_multiple_of: Optional[int] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
return_token_type_ids: Optional[bool] = None,
return_attention_mask: Optional[bool] = None,
return_overflowing_tokens: bool = False,
return_special_tokens_mask: bool = False,
return_offsets_mapping: bool = False,
return_length: bool = False,
verbose: bool = True,
prepend_batch_axis: bool = False,
**kwargs,
) -> BatchEncoding:
"""
Prepares a sequence or a pair of sequences so that it can be used by the model. It adds special tokens,
truncates sequences if overflowing while taking into account the special tokens and manages a moving window
(with user defined stride) for overflowing tokens.
Word-level `boxes` are turned into token-level `bbox`. If provided, word-level `word_labels` are turned into
token-level `labels`. The word label is used for the first token of the word, while remaining tokens are
labeled with -100, such that they will be ignored by the loss function.
Args:
text (`str`, `List[str]`, `List[List[str]]`):
The first sequence to be encoded. This can be a string, a list of strings or a list of list of strings.
text_pair (`List[str]` or `List[int]`, *optional*):
Optional second sequence to be encoded. This can be a list of strings (words of a single example) or a
list of list of strings (words of a batch of examples).
"""
# Backward compatibility for 'truncation_strategy', 'pad_to_max_length'
padding_strategy, truncation_strategy, max_length, kwargs = self._get_padding_truncation_strategies(
padding=padding,
truncation=truncation,
max_length=max_length,
pad_to_multiple_of=pad_to_multiple_of,
verbose=verbose,
**kwargs,
)
tokens = []
pair_tokens = []
token_boxes = []
pair_token_boxes = []
labels = []
if text_pair is None:
if word_labels is None:
# CASE 1: document image classification (training + inference) + CASE 2: token classification (inference)
for word, box in zip(text, boxes):
if len(word) < 1: # skip empty words
continue
word_tokens = self.tokenize(word)
tokens.extend(word_tokens)
token_boxes.extend([box] * len(word_tokens))
else:
# CASE 2: token classification (training)
for word, box, label in zip(text, boxes, word_labels):
if len(word) < 1: # skip empty words
continue
word_tokens = self.tokenize(word)
tokens.extend(word_tokens)
token_boxes.extend([box] * len(word_tokens))
if self.only_label_first_subword:
# Use the real label id for the first token of the word, and padding ids for the remaining tokens
labels.extend([label] + [self.pad_token_label] * (len(word_tokens) - 1))
else:
labels.extend([label] * len(word_tokens))
else:
# CASE 3: document visual question answering (inference)
# text = question
# text_pair = words
tokens = self.tokenize(text)
token_boxes = [self.pad_token_box for _ in range(len(tokens))] + [self.sep_token_box]
for word, box in zip(text_pair, boxes):
if len(word) < 1: # skip empty words
continue
word_tokens = self.tokenize(word)
pair_tokens.extend(word_tokens)
pair_token_boxes.extend([box] * len(word_tokens))
# Create ids + pair_ids
ids = self.convert_tokens_to_ids(tokens)
pair_ids = self.convert_tokens_to_ids(pair_tokens) if pair_tokens else None
# Compute the total size of the returned encodings
pair = bool(pair_ids is not None)
len_ids = len(ids)
len_pair_ids = len(pair_ids) if pair else 0
total_len = len_ids + len_pair_ids + (self.num_special_tokens_to_add(pair=pair) if add_special_tokens else 0)
# Truncation: Handle max sequence length
overflowing_tokens = []
overflowing_token_boxes = []
overflowing_labels = []
if truncation_strategy != TruncationStrategy.DO_NOT_TRUNCATE and max_length and total_len > max_length:
(
ids,
token_boxes,
pair_ids,
pair_token_boxes,
labels,
overflowing_tokens,
overflowing_token_boxes,
overflowing_labels,
) = self.truncate_sequences(
ids,
token_boxes,
pair_ids=pair_ids,
pair_token_boxes=pair_token_boxes,
labels=labels,
num_tokens_to_remove=total_len - max_length,
truncation_strategy=truncation_strategy,
stride=stride,
)
if return_token_type_ids and not add_special_tokens:
raise ValueError(
"Asking to return token_type_ids while setting add_special_tokens to False "
"results in an undefined behavior. Please set add_special_tokens to True or "
"set return_token_type_ids to None."
)
# Load from model defaults
if return_token_type_ids is None:
return_token_type_ids = "token_type_ids" in self.model_input_names
if return_attention_mask is None:
return_attention_mask = "attention_mask" in self.model_input_names
encoded_inputs = {}
if return_overflowing_tokens:
encoded_inputs["overflowing_tokens"] = overflowing_tokens
encoded_inputs["overflowing_token_boxes"] = overflowing_token_boxes
encoded_inputs["overflowing_labels"] = overflowing_labels
encoded_inputs["num_truncated_tokens"] = total_len - max_length
# Add special tokens
if add_special_tokens:
sequence = self.build_inputs_with_special_tokens(ids, pair_ids)
token_type_ids = self.create_token_type_ids_from_sequences(ids, pair_ids)
token_boxes = [self.cls_token_box] + token_boxes + [self.sep_token_box]
if pair_token_boxes:
pair_token_boxes = pair_token_boxes + [self.sep_token_box]
if labels:
labels = [self.pad_token_label] + labels + [self.pad_token_label]
else:
sequence = ids + pair_ids if pair else ids
token_type_ids = [0] * len(ids) + ([0] * len(pair_ids) if pair else [])
# Build output dictionary
encoded_inputs["input_ids"] = sequence
encoded_inputs["bbox"] = token_boxes + pair_token_boxes
if return_token_type_ids:
encoded_inputs["token_type_ids"] = token_type_ids
if return_special_tokens_mask:
if add_special_tokens:
encoded_inputs["special_tokens_mask"] = self.get_special_tokens_mask(ids, pair_ids)
else:
encoded_inputs["special_tokens_mask"] = [0] * len(sequence)
if labels:
encoded_inputs["labels"] = labels
# Check lengths
self._eventual_warn_about_too_long_sequence(encoded_inputs["input_ids"], max_length, verbose)
# Padding
if padding_strategy != PaddingStrategy.DO_NOT_PAD or return_attention_mask:
encoded_inputs = self.pad(
encoded_inputs,
max_length=max_length,
padding=padding_strategy.value,
pad_to_multiple_of=pad_to_multiple_of,
return_attention_mask=return_attention_mask,
)
if return_length:
encoded_inputs["length"] = len(encoded_inputs["input_ids"])
batch_outputs = BatchEncoding(
encoded_inputs, tensor_type=return_tensors, prepend_batch_axis=prepend_batch_axis
)
return batch_outputs
def truncate_sequences(
self,
ids: List[int],
token_boxes: List[List[int]],
pair_ids: Optional[List[int]] = None,
pair_token_boxes: Optional[List[List[int]]] = None,
labels: Optional[List[int]] = None,
num_tokens_to_remove: int = 0,
truncation_strategy: Union[str, TruncationStrategy] = "longest_first",
stride: int = 0,
) -> Tuple[List[int], List[int], List[int]]:
"""
Truncates a sequence pair in-place following the strategy.
Args:
ids (`List[int]`):
Tokenized input ids of the first sequence. Can be obtained from a string by chaining the `tokenize` and
`convert_tokens_to_ids` methods.
token_boxes (`List[List[int]]`):
Bounding boxes of the first sequence.
pair_ids (`List[int]`, *optional*):
Tokenized input ids of the second sequence. Can be obtained from a string by chaining the `tokenize`
and `convert_tokens_to_ids` methods.
pair_token_boxes (`List[List[int]]`, *optional*):
Bounding boxes of the second sequence.
labels (`List[int]`, *optional*):
Labels of the first sequence (for token classification tasks).
num_tokens_to_remove (`int`, *optional*, defaults to 0):
Number of tokens to remove using the truncation strategy.
truncation_strategy (`str` or [`~tokenization_utils_base.TruncationStrategy`], *optional*, defaults to `False`):
The strategy to follow for truncation. Can be:
- `'longest_first'`: Truncate to a maximum length specified with the argument `max_length` or to the
maximum acceptable input length for the model if that argument is not provided. This will truncate
token by token, removing a token from the longest sequence in the pair if a pair of sequences (or a
batch of pairs) is provided.
- `'only_first'`: Truncate to a maximum length specified with the argument `max_length` or to the
maximum acceptable input length for the model if that argument is not provided. This will only
truncate the first sequence of a pair if a pair of sequences (or a batch of pairs) is provided.
- `'only_second'`: Truncate to a maximum length specified with the argument `max_length` or to the
maximum acceptable input length for the model if that argument is not provided. This will only
truncate the second sequence of a pair if a pair of sequences (or a batch of pairs) is provided.
- `'do_not_truncate'` (default): No truncation (i.e., can output batch with sequence lengths greater
than the model maximum admissible input size).
stride (`int`, *optional*, defaults to 0):
If set to a positive number, the overflowing tokens returned will contain some tokens from the main
sequence returned. The value of this argument defines the number of additional tokens.
Returns:
`Tuple[List[int], List[int], List[int]]`: The truncated `ids`, the truncated `pair_ids` and the list of
overflowing tokens.
"""
if num_tokens_to_remove <= 0:
return ids, token_boxes, pair_ids, pair_token_boxes, labels, [], [], []
if not isinstance(truncation_strategy, TruncationStrategy):
truncation_strategy = TruncationStrategy(truncation_strategy)
overflowing_tokens = []
overflowing_token_boxes = []
overflowing_labels = []
if truncation_strategy == TruncationStrategy.LONGEST_FIRST:
for _ in range(num_tokens_to_remove):
if pair_ids is None or len(ids) > len(pair_ids):
if not overflowing_tokens:
window_len = min(len(ids), stride + 1)
else:
window_len = 1
overflowing_tokens.extend(ids[-window_len:])
overflowing_token_boxes.extend(token_boxes[-window_len:])
overflowing_labels.extend(labels[-window_len:])
ids = ids[:-1]
token_boxes = token_boxes[:-1]
labels = labels[:-1]
else:
if not overflowing_tokens:
window_len = min(len(pair_ids), stride + 1)
else:
window_len = 1
overflowing_tokens.extend(pair_ids[-window_len:])
overflowing_token_boxes.extend(pair_token_boxes[-window_len:])
pair_ids = pair_ids[:-1]
pair_token_boxes = pair_token_boxes[:-1]
elif truncation_strategy == TruncationStrategy.ONLY_FIRST:
if len(ids) > num_tokens_to_remove:
window_len = min(len(ids), stride + num_tokens_to_remove)
overflowing_tokens = ids[-window_len:]
overflowing_token_boxes = token_boxes[-window_len:]
overflowing_labels = labels[-window_len:]
ids = ids[:-num_tokens_to_remove]
token_boxes = token_boxes[:-num_tokens_to_remove]
labels = labels[:-num_tokens_to_remove]
else:
logger.error(
f"We need to remove {num_tokens_to_remove} to truncate the input "
f"but the first sequence has a length {len(ids)}. "
f"Please select another truncation strategy than {truncation_strategy}, "
"for instance 'longest_first' or 'only_second'."
)
elif truncation_strategy == TruncationStrategy.ONLY_SECOND and pair_ids is not None:
if len(pair_ids) > num_tokens_to_remove:
window_len = min(len(pair_ids), stride + num_tokens_to_remove)
overflowing_tokens = pair_ids[-window_len:]
overflowing_token_boxes = pair_token_boxes[-window_len:]
pair_ids = pair_ids[:-num_tokens_to_remove]
pair_token_boxes = pair_token_boxes[:-num_tokens_to_remove]
else:
logger.error(
f"We need to remove {num_tokens_to_remove} to truncate the input "
f"but the second sequence has a length {len(pair_ids)}. "
f"Please select another truncation strategy than {truncation_strategy}, "
"for instance 'longest_first' or 'only_first'."
)
return (
ids,
token_boxes,
pair_ids,
pair_token_boxes,
labels,
overflowing_tokens,
overflowing_token_boxes,
overflowing_labels,
)
def _pad(
self,
encoded_inputs: Union[Dict[str, EncodedInput], BatchEncoding],
max_length: Optional[int] = None,
padding_strategy: PaddingStrategy = PaddingStrategy.DO_NOT_PAD,
pad_to_multiple_of: Optional[int] = None,
return_attention_mask: Optional[bool] = None,
) -> dict:
"""
Pad encoded inputs (on left/right and up to predefined length or max length in the batch)
Args:
encoded_inputs:
Dictionary of tokenized inputs (`List[int]`) or batch of tokenized inputs (`List[List[int]]`).
max_length: maximum length of the returned list and optionally padding length (see below).
Will truncate by taking into account the special tokens.
padding_strategy: PaddingStrategy to use for padding.
- PaddingStrategy.LONGEST Pad to the longest sequence in the batch
- PaddingStrategy.MAX_LENGTH: Pad to the max length (default)
- PaddingStrategy.DO_NOT_PAD: Do not pad
The tokenizer padding sides are defined in self.padding_side:
- 'left': pads on the left of the sequences
- 'right': pads on the right of the sequences
pad_to_multiple_of: (optional) Integer if set will pad the sequence to a multiple of the provided value.
This is especially useful to enable the use of Tensor Core on NVIDIA hardware with compute capability
`>= 7.5` (Volta).
return_attention_mask:
(optional) Set to False to avoid returning attention mask (default: set to model specifics)
"""
# Load from model defaults
if return_attention_mask is None:
return_attention_mask = "attention_mask" in self.model_input_names
required_input = encoded_inputs[self.model_input_names[0]]
if padding_strategy == PaddingStrategy.LONGEST:
max_length = len(required_input)
if max_length is not None and pad_to_multiple_of is not None and (max_length % pad_to_multiple_of != 0):
max_length = ((max_length // pad_to_multiple_of) + 1) * pad_to_multiple_of
needs_to_be_padded = padding_strategy != PaddingStrategy.DO_NOT_PAD and len(required_input) != max_length
# Initialize attention mask if not present.
if return_attention_mask and "attention_mask" not in encoded_inputs:
encoded_inputs["attention_mask"] = [1] * len(required_input)
if needs_to_be_padded:
difference = max_length - len(required_input)
if self.padding_side == "right":
if return_attention_mask:
encoded_inputs["attention_mask"] = encoded_inputs["attention_mask"] + [0] * difference
if "token_type_ids" in encoded_inputs:
encoded_inputs["token_type_ids"] = (
encoded_inputs["token_type_ids"] + [self.pad_token_type_id] * difference
)
if "bbox" in encoded_inputs:
encoded_inputs["bbox"] = encoded_inputs["bbox"] + [self.pad_token_box] * difference
if "labels" in encoded_inputs:
encoded_inputs["labels"] = encoded_inputs["labels"] + [self.pad_token_label] * difference
if "special_tokens_mask" in encoded_inputs:
encoded_inputs["special_tokens_mask"] = encoded_inputs["special_tokens_mask"] + [1] * difference
encoded_inputs[self.model_input_names[0]] = required_input + [self.pad_token_id] * difference
elif self.padding_side == "left":
if return_attention_mask:
encoded_inputs["attention_mask"] = [0] * difference + encoded_inputs["attention_mask"]
if "token_type_ids" in encoded_inputs:
encoded_inputs["token_type_ids"] = [self.pad_token_type_id] * difference + encoded_inputs[
"token_type_ids"
]
if "bbox" in encoded_inputs:
encoded_inputs["bbox"] = [self.pad_token_box] * difference + encoded_inputs["bbox"]
if "labels" in encoded_inputs:
encoded_inputs["labels"] = [self.pad_token_label] * difference + encoded_inputs["labels"]
if "special_tokens_mask" in encoded_inputs:
encoded_inputs["special_tokens_mask"] = [1] * difference + encoded_inputs["special_tokens_mask"]
encoded_inputs[self.model_input_names[0]] = [self.pad_token_id] * difference + required_input
else:
raise ValueError("Invalid padding strategy:" + str(self.padding_side))
return encoded_inputs
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/perceiver/feature_extraction_perceiver.py | # coding=utf-8
# Copyright 2021 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Feature extractor class for Perceiver."""
import warnings
from ...utils import logging
from .image_processing_perceiver import PerceiverImageProcessor
logger = logging.get_logger(__name__)
class PerceiverFeatureExtractor(PerceiverImageProcessor):
def __init__(self, *args, **kwargs) -> None:
warnings.warn(
"The class PerceiverFeatureExtractor is deprecated and will be removed in version 5 of Transformers."
" Please use PerceiverImageProcessor instead.",
FutureWarning,
)
super().__init__(*args, **kwargs)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/perceiver/tokenization_perceiver.py | # coding=utf-8
# Copyright 2021 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Tokenization class for Perceiver."""
from typing import Dict, List, Optional, Tuple
from ...tokenization_utils import AddedToken, PreTrainedTokenizer
from ...utils import logging
logger = logging.get_logger(__name__)
class PerceiverTokenizer(PreTrainedTokenizer):
"""
Construct a Perceiver tokenizer. The Perceiver simply uses raw bytes utf-8 encoding.
This tokenizer inherits from [`PreTrainedTokenizer`] which contains most of the main methods. Users should refer to
this superclass for more information regarding those methods.
Args:
pad_token (`str`, *optional*, defaults to `"[PAD]"`):
The token used for padding, for example when batching sequences of different lengths.
bos_token (`str`, *optional*, defaults to `"[BOS]"`):
The BOS token (reserved in the vocab, but not actually used).
eos_token (`str`, *optional*, defaults to `"[EOS]"`):
The end of sequence token (reserved in the vocab, but not actually used).
<Tip>
When building a sequence using special tokens, this is not the token that is used for the end of sequence.
The token used is the `sep_token`.
</Tip>
mask_token (`str`, *optional*, defaults to `"[MASK]"`):
The MASK token, useful for masked language modeling.
cls_token (`str`, *optional*, defaults to `"[CLS]"`):
The CLS token (reserved in the vocab, but not actually used).
sep_token (`str`, *optional*, defaults to `"[SEP]"`):
The separator token, which is used when building a sequence from two sequences.
"""
model_input_names = ["input_ids", "attention_mask"]
def __init__(
self,
pad_token="[PAD]",
bos_token="[BOS]",
eos_token="[EOS]",
mask_token="[MASK]",
cls_token="[CLS]",
sep_token="[SEP]",
model_max_length=2048,
**kwargs,
) -> None:
pad_token = AddedToken(pad_token, lstrip=False, rstrip=False) if isinstance(pad_token, str) else pad_token
bos_token = AddedToken(bos_token, lstrip=False, rstrip=False) if isinstance(bos_token, str) else bos_token
eos_token = AddedToken(eos_token, lstrip=False, rstrip=False) if isinstance(eos_token, str) else eos_token
mask_token = AddedToken(mask_token, lstrip=False, rstrip=False) if isinstance(mask_token, str) else mask_token
cls_token = AddedToken(cls_token, lstrip=False, rstrip=False) if isinstance(cls_token, str) else cls_token
sep_token = AddedToken(sep_token, lstrip=False, rstrip=False) if isinstance(sep_token, str) else sep_token
self._utf_vocab_size = 2**8 # utf is 8 bits
# Since these tokens are not part of the vocabulary, we manually add them
self._added_tokens_decoder: Dict[str, int] = {
0: pad_token,
1: bos_token,
2: eos_token,
3: mask_token,
4: cls_token,
5: sep_token,
}
self._num_special_tokens = len(self._added_tokens_decoder)
super().__init__(
pad_token=pad_token,
bos_token=bos_token,
eos_token=eos_token,
mask_token=mask_token,
cls_token=cls_token,
sep_token=sep_token,
model_max_length=model_max_length,
**kwargs,
)
def get_vocab(self) -> Dict[str, int]:
vocab = {}
for i in range(self._utf_vocab_size):
token = chr(i)
vocab[token] = i + self._num_special_tokens
vocab.update(self.added_tokens_encoder)
return vocab
@property
def vocab_size(self):
return self._utf_vocab_size
def get_special_tokens_mask(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieve sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer `prepare_for_model` method.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
already_has_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
`List[int]`: A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
return super().get_special_tokens_mask(
token_ids_0=token_ids_0, token_ids_1=token_ids_1, already_has_special_tokens=True
)
# normal case: some special tokens
if token_ids_1 is None:
return [1] + [0] * len(token_ids_0) + [1]
return [1] + ([0] * len(token_ids_0)) + [1] + ([0] * len(token_ids_1)) + [1]
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks. A sequence has the
following format:
- single sequence: `[CLS] X [SEP]`
- pair of sequences: `[CLS] A [SEP] B [SEP]`
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
if token_ids_1 is None:
return [self.cls_token_id] + token_ids_0 + [self.sep_token_id]
else:
return [self.cls_token_id] + token_ids_0 + [self.sep_token_id] + token_ids_1 + [self.sep_token_id]
def _tokenize(self, text: str) -> List[str]:
"""Take as input a string and return a list of strings (tokens) for words/sub-words"""
tokens = [chr(i) for i in text.encode("utf-8")]
return tokens
def _convert_token_to_id(self, token):
"""Converts a token (str) in an id using the vocab."""
if len(token) != 1:
token_id = self.unk_token_id
else:
token_id = ord(token) + self._num_special_tokens
return token_id
def _convert_id_to_token(self, index):
"""Converts an index (integer) in a token (str) using the vocab."""
token = chr(index - self._num_special_tokens)
return token
# TODO @ArthurZ refactor this as well....
def convert_tokens_to_string(self, tokens):
"""Converts a sequence of tokens (string) in a single string."""
bstring = b""
for token in tokens:
if token in self.added_tokens_encoder:
tok_string = str(token).encode("utf-8")
else:
tok_string = bytes([ord(token)])
bstring += tok_string
string = bstring.decode("utf-8", errors="replace")
return string
# PerceiverTokenizer has no vocab file
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
return ()
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/perceiver/image_processing_perceiver.py | # coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Image processor class for Perceiver."""
from typing import Dict, List, Optional, Union
import numpy as np
from ...image_processing_utils import BaseImageProcessor, BatchFeature, get_size_dict
from ...image_transforms import center_crop, resize, to_channel_dimension_format
from ...image_utils import (
IMAGENET_DEFAULT_MEAN,
IMAGENET_DEFAULT_STD,
ChannelDimension,
ImageInput,
PILImageResampling,
get_image_size,
infer_channel_dimension_format,
is_scaled_image,
make_list_of_images,
to_numpy_array,
valid_images,
)
from ...utils import TensorType, is_vision_available, logging
if is_vision_available():
import PIL
logger = logging.get_logger(__name__)
class PerceiverImageProcessor(BaseImageProcessor):
r"""
Constructs a Perceiver image processor.
Args:
do_center_crop (`bool`, `optional`, defaults to `True`):
Whether or not to center crop the image. If the input size if smaller than `crop_size` along any edge, the
image will be padded with zeros and then center cropped. Can be overridden by the `do_center_crop`
parameter in the `preprocess` method.
crop_size (`Dict[str, int]`, *optional*, defaults to `{"height": 256, "width": 256}`):
Desired output size when applying center-cropping. Can be overridden by the `crop_size` parameter in the
`preprocess` method.
do_resize (`bool`, *optional*, defaults to `True`):
Whether to resize the image to `(size["height"], size["width"])`. Can be overridden by the `do_resize`
parameter in the `preprocess` method.
size (`Dict[str, int]` *optional*, defaults to `{"height": 224, "width": 224}`):
Size of the image after resizing. Can be overridden by the `size` parameter in the `preprocess` method.
resample (`PILImageResampling`, *optional*, defaults to `PILImageResampling.BICUBIC`):
Defines the resampling filter to use if resizing the image. Can be overridden by the `resample` parameter
in the `preprocess` method.
do_rescale (`bool`, *optional*, defaults to `True`):
Whether to rescale the image by the specified scale `rescale_factor`. Can be overridden by the `do_rescale`
parameter in the `preprocess` method.
rescale_factor (`int` or `float`, *optional*, defaults to `1/255`):
Defines the scale factor to use if rescaling the image. Can be overridden by the `rescale_factor` parameter
in the `preprocess` method.
do_normalize:
Whether to normalize the image. Can be overridden by the `do_normalize` parameter in the `preprocess`
method.
image_mean (`float` or `List[float]`, *optional*, defaults to `IMAGENET_STANDARD_MEAN`):
Mean to use if normalizing the image. This is a float or list of floats the length of the number of
channels in the image. Can be overridden by the `image_mean` parameter in the `preprocess` method.
image_std (`float` or `List[float]`, *optional*, defaults to `IMAGENET_STANDARD_STD`):
Standard deviation to use if normalizing the image. This is a float or list of floats the length of the
number of channels in the image. Can be overridden by the `image_std` parameter in the `preprocess` method.
"""
model_input_names = ["pixel_values"]
def __init__(
self,
do_center_crop: bool = True,
crop_size: Dict[str, int] = None,
do_resize: bool = True,
size: Dict[str, int] = None,
resample: PILImageResampling = PILImageResampling.BICUBIC,
do_rescale: bool = True,
rescale_factor: Union[int, float] = 1 / 255,
do_normalize: bool = True,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
**kwargs,
) -> None:
super().__init__(**kwargs)
crop_size = crop_size if crop_size is not None else {"height": 256, "width": 256}
crop_size = get_size_dict(crop_size, param_name="crop_size")
size = size if size is not None else {"height": 224, "width": 224}
size = get_size_dict(size)
self.do_center_crop = do_center_crop
self.crop_size = crop_size
self.do_resize = do_resize
self.size = size
self.resample = resample
self.do_rescale = do_rescale
self.rescale_factor = rescale_factor
self.do_normalize = do_normalize
self.image_mean = image_mean if image_mean is not None else IMAGENET_DEFAULT_MEAN
self.image_std = image_std if image_std is not None else IMAGENET_DEFAULT_STD
def center_crop(
self,
image: np.ndarray,
crop_size: Dict[str, int],
size: Optional[int] = None,
data_format: Optional[Union[str, ChannelDimension]] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Center crop an image to `(size["height"] / crop_size["height"] * min_dim, size["width"] / crop_size["width"] *
min_dim)`. Where `min_dim = min(size["height"], size["width"])`.
If the input size is smaller than `crop_size` along any edge, the image will be padded with zeros and then
center cropped.
Args:
image (`np.ndarray`):
Image to center crop.
crop_size (`Dict[str, int]`):
Desired output size after applying the center crop.
size (`Dict[str, int]`, *optional*):
Size of the image after resizing. If not provided, the self.size attribute will be used.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
input_data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the input image. If not provided, it will be inferred.
"""
size = self.size if size is None else size
size = get_size_dict(size)
crop_size = get_size_dict(crop_size, param_name="crop_size")
height, width = get_image_size(image, channel_dim=input_data_format)
min_dim = min(height, width)
cropped_height = (size["height"] / crop_size["height"]) * min_dim
cropped_width = (size["width"] / crop_size["width"]) * min_dim
return center_crop(
image,
size=(cropped_height, cropped_width),
data_format=data_format,
input_data_format=input_data_format,
**kwargs,
)
# Copied from transformers.models.vit.image_processing_vit.ViTImageProcessor.resize with PILImageResampling.BILINEAR->PILImageResampling.BICUBIC
def resize(
self,
image: np.ndarray,
size: Dict[str, int],
resample: PILImageResampling = PILImageResampling.BICUBIC,
data_format: Optional[Union[str, ChannelDimension]] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Resize an image to `(size["height"], size["width"])`.
Args:
image (`np.ndarray`):
Image to resize.
size (`Dict[str, int]`):
Dictionary in the format `{"height": int, "width": int}` specifying the size of the output image.
resample (`PILImageResampling`, *optional*, defaults to `PILImageResampling.BICUBIC`):
`PILImageResampling` filter to use when resizing the image e.g. `PILImageResampling.BICUBIC`.
data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the output image. If unset, the channel dimension format of the input
image is used. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- `"none"` or `ChannelDimension.NONE`: image in (height, width) format.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the input image. If unset, the channel dimension format is inferred
from the input image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- `"none"` or `ChannelDimension.NONE`: image in (height, width) format.
Returns:
`np.ndarray`: The resized image.
"""
size = get_size_dict(size)
if "height" not in size or "width" not in size:
raise ValueError(f"The `size` dictionary must contain the keys `height` and `width`. Got {size.keys()}")
output_size = (size["height"], size["width"])
return resize(
image,
size=output_size,
resample=resample,
data_format=data_format,
input_data_format=input_data_format,
**kwargs,
)
def preprocess(
self,
images: ImageInput,
do_center_crop: Optional[bool] = None,
crop_size: Optional[Dict[str, int]] = None,
do_resize: Optional[bool] = None,
size: Optional[Dict[str, int]] = None,
resample: PILImageResampling = None,
do_rescale: Optional[bool] = None,
rescale_factor: Optional[float] = None,
do_normalize: Optional[bool] = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
data_format: ChannelDimension = ChannelDimension.FIRST,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> PIL.Image.Image:
"""
Preprocess an image or batch of images.
Args:
images (`ImageInput`):
Image to preprocess. Expects a single or batch of images with pixel values ranging from 0 to 255. If
passing in images with pixel values between 0 and 1, set `do_rescale=False`.
do_center_crop (`bool`, *optional*, defaults to `self.do_center_crop`):
Whether to center crop the image to `crop_size`.
crop_size (`Dict[str, int]`, *optional*, defaults to `self.crop_size`):
Desired output size after applying the center crop.
do_resize (`bool`, *optional*, defaults to `self.do_resize`):
Whether to resize the image.
size (`Dict[str, int]`, *optional*, defaults to `self.size`):
Size of the image after resizing.
resample (`int`, *optional*, defaults to `self.resample`):
Resampling filter to use if resizing the image. This can be one of the enum `PILImageResampling`, Only
has an effect if `do_resize` is set to `True`.
do_rescale (`bool`, *optional*, defaults to `self.do_rescale`):
Whether to rescale the image.
rescale_factor (`float`, *optional*, defaults to `self.rescale_factor`):
Rescale factor to rescale the image by if `do_rescale` is set to `True`.
do_normalize (`bool`, *optional*, defaults to `self.do_normalize`):
Whether to normalize the image.
image_mean (`float` or `List[float]`, *optional*, defaults to `self.image_mean`):
Image mean.
image_std (`float` or `List[float]`, *optional*, defaults to `self.image_std`):
Image standard deviation.
return_tensors (`str` or `TensorType`, *optional*):
The type of tensors to return. Can be one of:
- Unset: Return a list of `np.ndarray`.
- `TensorType.TENSORFLOW` or `'tf'`: Return a batch of type `tf.Tensor`.
- `TensorType.PYTORCH` or `'pt'`: Return a batch of type `torch.Tensor`.
- `TensorType.NUMPY` or `'np'`: Return a batch of type `np.ndarray`.
- `TensorType.JAX` or `'jax'`: Return a batch of type `jax.numpy.ndarray`.
data_format (`ChannelDimension` or `str`, *optional*, defaults to `ChannelDimension.FIRST`):
The channel dimension format for the output image. Can be one of:
- `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `ChannelDimension.LAST`: image in (height, width, num_channels) format.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the input image. If unset, the channel dimension format is inferred
from the input image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- `"none"` or `ChannelDimension.NONE`: image in (height, width) format.
"""
do_center_crop = do_center_crop if do_center_crop is not None else self.do_center_crop
crop_size = crop_size if crop_size is not None else self.crop_size
crop_size = get_size_dict(crop_size, param_name="crop_size")
do_resize = do_resize if do_resize is not None else self.do_resize
size = size if size is not None else self.size
size = get_size_dict(size)
resample = resample if resample is not None else self.resample
do_rescale = do_rescale if do_rescale is not None else self.do_rescale
rescale_factor = rescale_factor if rescale_factor is not None else self.rescale_factor
do_normalize = do_normalize if do_normalize is not None else self.do_normalize
image_mean = image_mean if image_mean is not None else self.image_mean
image_std = image_std if image_std is not None else self.image_std
images = make_list_of_images(images)
if not valid_images(images):
raise ValueError(
"Invalid image type. Must be of type PIL.Image.Image, numpy.ndarray, "
"torch.Tensor, tf.Tensor or jax.ndarray."
)
if do_center_crop and crop_size is None:
raise ValueError("If `do_center_crop` is set to `True`, `crop_size` must be provided.")
if do_resize and size is None:
raise ValueError("Size must be specified if do_resize is True.")
if do_rescale and rescale_factor is None:
raise ValueError("Rescale factor must be specified if do_rescale is True.")
if do_normalize and (image_mean is None or image_std is None):
raise ValueError("Image mean and image standard deviation must be specified if do_normalize is True.")
# All transformations expect numpy arrays.
images = [to_numpy_array(image) for image in images]
if is_scaled_image(images[0]) and do_rescale:
logger.warning_once(
"It looks like you are trying to rescale already rescaled images. If the input"
" images have pixel values between 0 and 1, set `do_rescale=False` to avoid rescaling them again."
)
if input_data_format is None:
# We assume that all images have the same channel dimension format.
input_data_format = infer_channel_dimension_format(images[0])
if do_center_crop:
images = [
self.center_crop(image, crop_size, size=size, input_data_format=input_data_format) for image in images
]
if do_resize:
images = [
self.resize(image=image, size=size, resample=resample, input_data_format=input_data_format)
for image in images
]
if do_rescale:
images = [
self.rescale(image=image, scale=rescale_factor, input_data_format=input_data_format)
for image in images
]
if do_normalize:
images = [
self.normalize(image=image, mean=image_mean, std=image_std, input_data_format=input_data_format)
for image in images
]
images = [
to_channel_dimension_format(image, data_format, input_channel_dim=input_data_format) for image in images
]
data = {"pixel_values": images}
return BatchFeature(data=data, tensor_type=return_tensors)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/perceiver/convert_perceiver_haiku_to_pytorch.py | # coding=utf-8
# Copyright 2021 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert Perceiver checkpoints originally implemented in Haiku."""
import argparse
import json
import pickle
from pathlib import Path
import haiku as hk
import numpy as np
import requests
import torch
from huggingface_hub import hf_hub_download
from PIL import Image
from transformers import (
PerceiverConfig,
PerceiverForImageClassificationConvProcessing,
PerceiverForImageClassificationFourier,
PerceiverForImageClassificationLearned,
PerceiverForMaskedLM,
PerceiverForMultimodalAutoencoding,
PerceiverForOpticalFlow,
PerceiverImageProcessor,
PerceiverTokenizer,
)
from transformers.utils import logging
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
def prepare_img():
# We will verify our results on an image of a dog
url = "https://storage.googleapis.com/perceiver_io/dalmation.jpg"
im = Image.open(requests.get(url, stream=True).raw)
return im
def rename_keys(state_dict, architecture):
for name in list(state_dict):
param = state_dict.pop(name)
# PREPROCESSORS
# rename text preprocessor embeddings (for MLM model)
name = name.replace("embed/embeddings", "input_preprocessor.embeddings.weight")
if name.startswith("trainable_position_encoding/pos_embs"):
name = name.replace(
"trainable_position_encoding/pos_embs", "input_preprocessor.position_embeddings.weight"
)
# rename image preprocessor embeddings (for image classification model with learned position embeddings)
name = name.replace("image_preprocessor/~/conv2_d/w", "input_preprocessor.convnet_1x1.weight")
name = name.replace("image_preprocessor/~/conv2_d/b", "input_preprocessor.convnet_1x1.bias")
name = name.replace(
"image_preprocessor/~_build_network_inputs/trainable_position_encoding/pos_embs",
"input_preprocessor.position_embeddings.position_embeddings",
)
name = name.replace(
"image_preprocessor/~_build_network_inputs/position_encoding_projector/linear/w",
"input_preprocessor.positions_projection.weight",
)
name = name.replace(
"image_preprocessor/~_build_network_inputs/position_encoding_projector/linear/b",
"input_preprocessor.positions_projection.bias",
)
# rename image preprocessor embeddings (for image classification model with conv processing)
if "counter" in name or "hidden" in name:
continue
name = name.replace(
"image_preprocessor/~/conv2_d_downsample/~/conv/w", "input_preprocessor.convnet.conv.weight"
)
name = name.replace(
"image_preprocessor/~/conv2_d_downsample/~/batchnorm/offset", "input_preprocessor.convnet.batchnorm.bias"
)
name = name.replace(
"image_preprocessor/~/conv2_d_downsample/~/batchnorm/scale", "input_preprocessor.convnet.batchnorm.weight"
)
name = name.replace(
"image_preprocessor/~/conv2_d_downsample/~/batchnorm/~/mean_ema/average",
"input_preprocessor.convnet.batchnorm.running_mean",
)
name = name.replace(
"image_preprocessor/~/conv2_d_downsample/~/batchnorm/~/var_ema/average",
"input_preprocessor.convnet.batchnorm.running_var",
)
# rename image preprocessor embeddings (for optical flow model)
name = name.replace("image_preprocessor/patches_linear/b", "input_preprocessor.conv_after_patches.bias")
name = name.replace("image_preprocessor/patches_linear/w", "input_preprocessor.conv_after_patches.weight")
# rename multimodal preprocessor embeddings
name = name.replace("multimodal_preprocessor/audio_mask_token/pos_embs", "input_preprocessor.mask.audio")
name = name.replace("multimodal_preprocessor/audio_padding/pos_embs", "input_preprocessor.padding.audio")
name = name.replace("multimodal_preprocessor/image_mask_token/pos_embs", "input_preprocessor.mask.image")
name = name.replace("multimodal_preprocessor/image_padding/pos_embs", "input_preprocessor.padding.image")
name = name.replace("multimodal_preprocessor/label_mask_token/pos_embs", "input_preprocessor.mask.label")
name = name.replace("multimodal_preprocessor/label_padding/pos_embs", "input_preprocessor.padding.label")
# DECODERS
# rename prefix of decoders
# multimodal autoencoding model
name = name.replace(
"multimodal_decoder/~/basic_decoder/cross_attention/", "decoder.decoder.decoding_cross_attention."
)
name = name.replace("multimodal_decoder/~decoder_query/audio_padding/pos_embs", "decoder.padding.audio")
name = name.replace("multimodal_decoder/~decoder_query/image_padding/pos_embs", "decoder.padding.image")
name = name.replace("multimodal_decoder/~decoder_query/label_padding/pos_embs", "decoder.padding.label")
name = name.replace("multimodal_decoder/~/basic_decoder/output/b", "decoder.decoder.final_layer.bias")
name = name.replace("multimodal_decoder/~/basic_decoder/output/w", "decoder.decoder.final_layer.weight")
if architecture == "multimodal_autoencoding":
name = name.replace(
"classification_decoder/~/basic_decoder/~/trainable_position_encoding/pos_embs",
"decoder.modalities.label.decoder.output_position_encodings.position_embeddings",
)
# flow model
name = name.replace(
"flow_decoder/~/basic_decoder/cross_attention/", "decoder.decoder.decoding_cross_attention."
)
name = name.replace("flow_decoder/~/basic_decoder/output/w", "decoder.decoder.final_layer.weight")
name = name.replace("flow_decoder/~/basic_decoder/output/b", "decoder.decoder.final_layer.bias")
# image models
name = name.replace(
"classification_decoder/~/basic_decoder/~/trainable_position_encoding/pos_embs",
"decoder.decoder.output_position_encodings.position_embeddings",
)
name = name.replace(
"basic_decoder/~/trainable_position_encoding/pos_embs",
"decoder.output_position_encodings.position_embeddings",
)
name = name.replace(
"classification_decoder/~/basic_decoder/cross_attention/", "decoder.decoder.decoding_cross_attention."
)
name = name.replace("classification_decoder/~/basic_decoder/output/b", "decoder.decoder.final_layer.bias")
name = name.replace("classification_decoder/~/basic_decoder/output/w", "decoder.decoder.final_layer.weight")
name = name = name.replace("classification_decoder/~/basic_decoder/~/", "decoder.decoder.")
name = name.replace("basic_decoder/cross_attention/", "decoder.decoding_cross_attention.")
name = name.replace("basic_decoder/~/", "decoder.")
# POSTPROCESSORS
name = name.replace(
"projection_postprocessor/linear/b", "output_postprocessor.modalities.image.classifier.bias"
)
name = name.replace(
"projection_postprocessor/linear/w", "output_postprocessor.modalities.image.classifier.weight"
)
name = name.replace(
"classification_postprocessor/linear/b", "output_postprocessor.modalities.label.classifier.bias"
)
name = name.replace(
"classification_postprocessor/linear/w", "output_postprocessor.modalities.label.classifier.weight"
)
name = name.replace("audio_postprocessor/linear/b", "output_postprocessor.modalities.audio.classifier.bias")
name = name.replace("audio_postprocessor/linear/w", "output_postprocessor.modalities.audio.classifier.weight")
# PERCEIVER MODEL
# rename latent embeddings
name = name.replace("perceiver_encoder/~/trainable_position_encoding/pos_embs", "embeddings.latents")
# rename latent embeddings (for multimodal model)
name = name.replace("encoder/~/trainable_position_encoding/pos_embs", "embeddings.latents")
# rename prefixes
if name.startswith("perceiver_encoder/~/"):
if "self_attention" in name:
suffix = "self_attends."
else:
suffix = ""
name = name.replace("perceiver_encoder/~/", "encoder." + suffix)
if name.startswith("encoder/~/"):
if "self_attention" in name:
suffix = "self_attends."
else:
suffix = ""
name = name.replace("encoder/~/", "encoder." + suffix)
# rename layernorm parameters
if "offset" in name:
name = name.replace("offset", "bias")
if "scale" in name:
name = name.replace("scale", "weight")
# in HuggingFace, the layernorm in between attention + MLP is just called "layernorm"
# rename layernorm in between attention + MLP of cross-attention
if "cross_attention" in name and "layer_norm_2" in name:
name = name.replace("layer_norm_2", "layernorm")
# rename layernorm in between attention + MLP of self-attention
if "self_attention" in name and "layer_norm_1" in name:
name = name.replace("layer_norm_1", "layernorm")
# in HuggingFace, the layernorms for queries + keys are called "layernorm1" and "layernorm2"
if "cross_attention" in name and "layer_norm_1" in name:
name = name.replace("layer_norm_1", "attention.self.layernorm2")
if "cross_attention" in name and "layer_norm" in name:
name = name.replace("layer_norm", "attention.self.layernorm1")
if "self_attention" in name and "layer_norm" in name:
name = name.replace("layer_norm", "attention.self.layernorm1")
# rename special characters by dots
name = name.replace("-", ".")
name = name.replace("/", ".")
# rename keys, queries, values and output of attention layers
if ("cross_attention" in name or "self_attention" in name) and "mlp" not in name:
if "linear.b" in name:
name = name.replace("linear.b", "self.query.bias")
if "linear.w" in name:
name = name.replace("linear.w", "self.query.weight")
if "linear_1.b" in name:
name = name.replace("linear_1.b", "self.key.bias")
if "linear_1.w" in name:
name = name.replace("linear_1.w", "self.key.weight")
if "linear_2.b" in name:
name = name.replace("linear_2.b", "self.value.bias")
if "linear_2.w" in name:
name = name.replace("linear_2.w", "self.value.weight")
if "linear_3.b" in name:
name = name.replace("linear_3.b", "output.dense.bias")
if "linear_3.w" in name:
name = name.replace("linear_3.w", "output.dense.weight")
if "self_attention_" in name:
name = name.replace("self_attention_", "")
if "self_attention" in name:
name = name.replace("self_attention", "0")
# rename dense layers of 2-layer MLP
if "mlp" in name:
if "linear.b" in name:
name = name.replace("linear.b", "dense1.bias")
if "linear.w" in name:
name = name.replace("linear.w", "dense1.weight")
if "linear_1.b" in name:
name = name.replace("linear_1.b", "dense2.bias")
if "linear_1.w" in name:
name = name.replace("linear_1.w", "dense2.weight")
# finally, TRANSPOSE if kernel and not embedding layer, and set value
if name[-6:] == "weight" and "embeddings" not in name:
param = np.transpose(param)
# if batchnorm, we need to squeeze it
if "batchnorm" in name:
param = np.squeeze(param)
if "embedding_decoder" not in name:
state_dict["perceiver." + name] = torch.from_numpy(param)
else:
state_dict[name] = torch.from_numpy(param)
@torch.no_grad()
def convert_perceiver_checkpoint(pickle_file, pytorch_dump_folder_path, architecture="MLM"):
"""
Copy/paste/tweak model's weights to our Perceiver structure.
"""
# load parameters as FlatMapping data structure
with open(pickle_file, "rb") as f:
checkpoint = pickle.loads(f.read())
state = None
if isinstance(checkpoint, dict) and architecture in [
"image_classification",
"image_classification_fourier",
"image_classification_conv",
]:
# the image classification_conv checkpoint also has batchnorm states (running_mean and running_var)
params = checkpoint["params"]
state = checkpoint["state"]
else:
params = checkpoint
# turn into initial state dict
state_dict = {}
for scope_name, parameters in hk.data_structures.to_mutable_dict(params).items():
for param_name, param in parameters.items():
state_dict[scope_name + "/" + param_name] = param
if state is not None:
# add state variables
for scope_name, parameters in hk.data_structures.to_mutable_dict(state).items():
for param_name, param in parameters.items():
state_dict[scope_name + "/" + param_name] = param
# rename keys
rename_keys(state_dict, architecture=architecture)
# load HuggingFace model
config = PerceiverConfig()
subsampling = None
repo_id = "huggingface/label-files"
if architecture == "MLM":
config.qk_channels = 8 * 32
config.v_channels = 1280
model = PerceiverForMaskedLM(config)
elif "image_classification" in architecture:
config.num_latents = 512
config.d_latents = 1024
config.d_model = 512
config.num_blocks = 8
config.num_self_attends_per_block = 6
config.num_cross_attention_heads = 1
config.num_self_attention_heads = 8
config.qk_channels = None
config.v_channels = None
# set labels
config.num_labels = 1000
filename = "imagenet-1k-id2label.json"
id2label = json.load(open(hf_hub_download(repo_id, filename, repo_type="dataset"), "r"))
id2label = {int(k): v for k, v in id2label.items()}
config.id2label = id2label
config.label2id = {v: k for k, v in id2label.items()}
if architecture == "image_classification":
config.image_size = 224
model = PerceiverForImageClassificationLearned(config)
elif architecture == "image_classification_fourier":
config.d_model = 261
model = PerceiverForImageClassificationFourier(config)
elif architecture == "image_classification_conv":
config.d_model = 322
model = PerceiverForImageClassificationConvProcessing(config)
else:
raise ValueError(f"Architecture {architecture} not supported")
elif architecture == "optical_flow":
config.num_latents = 2048
config.d_latents = 512
config.d_model = 322
config.num_blocks = 1
config.num_self_attends_per_block = 24
config.num_self_attention_heads = 16
config.num_cross_attention_heads = 1
model = PerceiverForOpticalFlow(config)
elif architecture == "multimodal_autoencoding":
config.num_latents = 28 * 28 * 1
config.d_latents = 512
config.d_model = 704
config.num_blocks = 1
config.num_self_attends_per_block = 8
config.num_self_attention_heads = 8
config.num_cross_attention_heads = 1
config.num_labels = 700
# define dummy inputs + subsampling (as each forward pass is only on a chunk of image + audio data)
images = torch.randn((1, 16, 3, 224, 224))
audio = torch.randn((1, 30720, 1))
nchunks = 128
image_chunk_size = np.prod((16, 224, 224)) // nchunks
audio_chunk_size = audio.shape[1] // config.samples_per_patch // nchunks
# process the first chunk
chunk_idx = 0
subsampling = {
"image": torch.arange(image_chunk_size * chunk_idx, image_chunk_size * (chunk_idx + 1)),
"audio": torch.arange(audio_chunk_size * chunk_idx, audio_chunk_size * (chunk_idx + 1)),
"label": None,
}
model = PerceiverForMultimodalAutoencoding(config)
# set labels
filename = "kinetics700-id2label.json"
id2label = json.load(open(hf_hub_download(repo_id, filename, repo_type="dataset"), "r"))
id2label = {int(k): v for k, v in id2label.items()}
config.id2label = id2label
config.label2id = {v: k for k, v in id2label.items()}
else:
raise ValueError(f"Architecture {architecture} not supported")
model.eval()
# load weights
model.load_state_dict(state_dict)
# prepare dummy input
input_mask = None
if architecture == "MLM":
tokenizer = PerceiverTokenizer.from_pretrained("/Users/NielsRogge/Documents/Perceiver/Tokenizer files")
text = "This is an incomplete sentence where some words are missing."
encoding = tokenizer(text, padding="max_length", return_tensors="pt")
# mask " missing.". Note that the model performs much better if the masked chunk starts with a space.
encoding.input_ids[0, 51:60] = tokenizer.mask_token_id
inputs = encoding.input_ids
input_mask = encoding.attention_mask
elif architecture in ["image_classification", "image_classification_fourier", "image_classification_conv"]:
image_processor = PerceiverImageProcessor()
image = prepare_img()
encoding = image_processor(image, return_tensors="pt")
inputs = encoding.pixel_values
elif architecture == "optical_flow":
inputs = torch.randn(1, 2, 27, 368, 496)
elif architecture == "multimodal_autoencoding":
images = torch.randn((1, 16, 3, 224, 224))
audio = torch.randn((1, 30720, 1))
inputs = {"image": images, "audio": audio, "label": torch.zeros((images.shape[0], 700))}
# forward pass
if architecture == "multimodal_autoencoding":
outputs = model(inputs=inputs, attention_mask=input_mask, subsampled_output_points=subsampling)
else:
outputs = model(inputs=inputs, attention_mask=input_mask)
logits = outputs.logits
# verify logits
if not isinstance(logits, dict):
print("Shape of logits:", logits.shape)
else:
for k, v in logits.items():
print(f"Shape of logits of modality {k}", v.shape)
if architecture == "MLM":
expected_slice = torch.tensor(
[[-11.8336, -11.6850, -11.8483], [-12.8149, -12.5863, -12.7904], [-12.8440, -12.6410, -12.8646]]
)
assert torch.allclose(logits[0, :3, :3], expected_slice)
masked_tokens_predictions = logits[0, 51:60].argmax(dim=-1).tolist()
expected_list = [38, 115, 111, 121, 121, 111, 116, 109, 52]
assert masked_tokens_predictions == expected_list
print("Greedy predictions:")
print(masked_tokens_predictions)
print()
print("Predicted string:")
print(tokenizer.decode(masked_tokens_predictions))
elif architecture in ["image_classification", "image_classification_fourier", "image_classification_conv"]:
print("Predicted class:", model.config.id2label[logits.argmax(-1).item()])
# Finally, save files
Path(pytorch_dump_folder_path).mkdir(exist_ok=True)
print(f"Saving model to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--pickle_file",
type=str,
default=None,
required=True,
help="Path to local pickle file of a Perceiver checkpoint you'd like to convert.",
)
parser.add_argument(
"--pytorch_dump_folder_path",
default=None,
type=str,
required=True,
help="Path to the output PyTorch model directory, provided as a string.",
)
parser.add_argument(
"--architecture",
default="MLM",
type=str,
help="""
Architecture, provided as a string. One of 'MLM', 'image_classification', image_classification_fourier',
image_classification_fourier', 'optical_flow' or 'multimodal_autoencoding'.
""",
)
args = parser.parse_args()
convert_perceiver_checkpoint(args.pickle_file, args.pytorch_dump_folder_path, args.architecture)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/perceiver/__init__.py | # Copyright 2021 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_tokenizers_available,
is_torch_available,
is_vision_available,
)
_import_structure = {
"configuration_perceiver": ["PERCEIVER_PRETRAINED_CONFIG_ARCHIVE_MAP", "PerceiverConfig", "PerceiverOnnxConfig"],
"tokenization_perceiver": ["PerceiverTokenizer"],
}
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["feature_extraction_perceiver"] = ["PerceiverFeatureExtractor"]
_import_structure["image_processing_perceiver"] = ["PerceiverImageProcessor"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_perceiver"] = [
"PERCEIVER_PRETRAINED_MODEL_ARCHIVE_LIST",
"PerceiverForImageClassificationConvProcessing",
"PerceiverForImageClassificationFourier",
"PerceiverForImageClassificationLearned",
"PerceiverForMaskedLM",
"PerceiverForMultimodalAutoencoding",
"PerceiverForOpticalFlow",
"PerceiverForSequenceClassification",
"PerceiverLayer",
"PerceiverModel",
"PerceiverPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_perceiver import PERCEIVER_PRETRAINED_CONFIG_ARCHIVE_MAP, PerceiverConfig, PerceiverOnnxConfig
from .tokenization_perceiver import PerceiverTokenizer
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .feature_extraction_perceiver import PerceiverFeatureExtractor
from .image_processing_perceiver import PerceiverImageProcessor
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_perceiver import (
PERCEIVER_PRETRAINED_MODEL_ARCHIVE_LIST,
PerceiverForImageClassificationConvProcessing,
PerceiverForImageClassificationFourier,
PerceiverForImageClassificationLearned,
PerceiverForMaskedLM,
PerceiverForMultimodalAutoencoding,
PerceiverForOpticalFlow,
PerceiverForSequenceClassification,
PerceiverLayer,
PerceiverModel,
PerceiverPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/perceiver/modeling_perceiver.py | # coding=utf-8
# Copyright 2021 Deepmind and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch Perceiver model."""
import abc
import math
from dataclasses import dataclass
from functools import reduce
from operator import __add__
from typing import Any, Callable, Dict, List, Mapping, Optional, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutputWithCrossAttentions
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, meshgrid, prune_linear_layer
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_perceiver import PerceiverConfig
ModalitySizeType = Mapping[str, int]
PreprocessorOutputType = Tuple[torch.Tensor, Optional[torch.Tensor], torch.Tensor]
PreprocessorType = Callable[..., PreprocessorOutputType]
PostprocessorType = Callable[..., Any]
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "deepmind/language-perceiver"
_CONFIG_FOR_DOC = "PerceiverConfig"
PERCEIVER_PRETRAINED_MODEL_ARCHIVE_LIST = [
"deepmind/language-perceiver",
# See all Perceiver models at https://huggingface.co/models?filter=perceiver
]
@dataclass
class PerceiverModelOutput(ModelOutput):
"""
Base class for Perceiver base model's outputs, with potential hidden states, attentions and cross-attentions.
Args:
logits (`torch.FloatTensor` of shape `(batch_size, num_labels)`):
Classification (or regression if config.num_labels==1) scores (before SoftMax).
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the model at the output of each layer
plus the initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights after the attention softmax, used to compute the weighted average in
the self-attention heads.
cross_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights of the decoder's cross-attention layer, after the attention softmax,
used to compute the weighted average in the cross-attention heads.
"""
logits: torch.FloatTensor = None
last_hidden_state: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
cross_attentions: Optional[Tuple[torch.FloatTensor]] = None
@dataclass
class PerceiverDecoderOutput(ModelOutput):
"""
Base class for Perceiver decoder outputs, with potential cross-attentions.
Args:
logits (`torch.FloatTensor` of shape `(batch_size, num_labels)`):
Output of the basic decoder.
cross_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights of the decoder's cross-attention layer, after the attention softmax,
used to compute the weighted average in the cross-attention heads.
"""
logits: torch.FloatTensor = None
cross_attentions: Optional[Tuple[torch.FloatTensor]] = None
@dataclass
class PerceiverMaskedLMOutput(ModelOutput):
"""
Base class for Perceiver's masked language model outputs.
Args:
loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned when `labels` is provided):
Masked language modeling (MLM) loss.
logits (`torch.FloatTensor` of shape `(batch_size, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head (scores for each vocabulary token before SoftMax).
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the model at the output of each layer
plus the initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, num_latents,
num_latents)`. Attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads.
cross_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights of the decoder's cross-attention layer, after the attention softmax,
used to compute the weighted average in the cross-attention heads.
"""
loss: Optional[torch.FloatTensor] = None
logits: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
cross_attentions: Optional[Tuple[torch.FloatTensor]] = None
@dataclass
class PerceiverClassifierOutput(ModelOutput):
"""
Base class for Perceiver's outputs of sequence/image classification models, optical flow and multimodal
autoencoding.
Args:
loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned when `labels` is provided):
Classification (or regression if config.num_labels==1) loss.
logits (`torch.FloatTensor` of shape `(batch_size, config.num_labels)`):
Classification (or regression if config.num_labels==1) scores (before SoftMax).
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the model at the output of each layer
plus the initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights after the attention softmax, used to compute the weighted average in
the self-attention heads.
cross_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights of the decoder's cross-attention layer, after the attention softmax,
used to compute the weighted average in the cross-attention heads.
"""
loss: Optional[torch.FloatTensor] = None
logits: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
cross_attentions: Optional[Tuple[torch.FloatTensor]] = None
class PerceiverEmbeddings(nn.Module):
"""Construct the latent embeddings."""
def __init__(self, config):
super().__init__()
self.latents = nn.Parameter(torch.randn(config.num_latents, config.d_latents))
def forward(self, batch_size: int):
return self.latents.expand(batch_size, -1, -1) # Thanks, Phil Wang
class PerceiverSelfAttention(nn.Module):
"""Multi-headed {cross, self}-attention. Can be used both in the encoder as well as in the decoder."""
def __init__(
self,
config,
is_cross_attention=False,
qk_channels=None,
v_channels=None,
num_heads=1,
q_dim=None,
kv_dim=None,
):
super().__init__()
self.num_heads = num_heads
# Q and K must have the same number of channels.
# Default to preserving Q's input's shape.
if qk_channels is None:
qk_channels = q_dim
# V's num_channels determines the shape of the output of QKV-attention.
# Default to the same number of channels used in the key-query operation.
if v_channels is None:
v_channels = qk_channels
if qk_channels % num_heads != 0:
raise ValueError(f"qk_channels ({qk_channels}) must be divisible by num_heads ({num_heads}).")
if v_channels % num_heads != 0:
raise ValueError(f"v_channels ({v_channels}) must be divisible by num_heads ({num_heads}).")
self.qk_channels = qk_channels
self.v_channels = v_channels
self.qk_channels_per_head = self.qk_channels // num_heads
self.v_channels_per_head = self.v_channels // num_heads
# Layer normalization
self.layernorm1 = nn.LayerNorm(q_dim)
self.layernorm2 = nn.LayerNorm(kv_dim) if is_cross_attention else nn.Identity()
# Projection matrices
self.query = nn.Linear(q_dim, qk_channels)
self.key = nn.Linear(kv_dim, qk_channels)
self.value = nn.Linear(kv_dim, v_channels)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
def transpose_for_scores(self, x, channels_per_head):
new_x_shape = x.size()[:-1] + (self.num_heads, channels_per_head)
x = x.view(*new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs: Optional[torch.FloatTensor] = None,
inputs_mask: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
hidden_states = self.layernorm1(hidden_states)
inputs = self.layernorm2(inputs)
# Project queries, keys and values to a common feature dimension. If this is instantiated as a cross-attention module,
# the keys and values come from the inputs; the attention mask needs to be such that the inputs's non-relevant tokens are not attended to.
is_cross_attention = inputs is not None
queries = self.query(hidden_states)
if is_cross_attention:
keys = self.key(inputs)
values = self.value(inputs)
attention_mask = inputs_mask
else:
keys = self.key(hidden_states)
values = self.value(hidden_states)
# Reshape channels for multi-head attention.
# We reshape from (batch_size, time, channels) to (batch_size, num_heads, time, channels per head)
queries = self.transpose_for_scores(queries, self.qk_channels_per_head)
keys = self.transpose_for_scores(keys, self.qk_channels_per_head)
values = self.transpose_for_scores(values, self.v_channels_per_head)
# Take the dot product between the queries and keys to get the raw attention scores.
attention_scores = torch.matmul(queries, keys.transpose(-1, -2))
batch_size, num_heads, seq_len, q_head_dim = queries.shape
_, _, _, v_head_dim = values.shape
hiddens = self.num_heads * v_head_dim
attention_scores = attention_scores / math.sqrt(q_head_dim)
if attention_mask is not None:
# Apply the attention mask (precomputed for all layers in PerceiverModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = nn.Softmax(dim=-1)(attention_scores)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, values)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (hiddens,)
context_layer = context_layer.view(*new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
return outputs
class PerceiverSelfOutput(nn.Module):
def __init__(self, config, input_channels, output_channels):
super().__init__()
self.dense = nn.Linear(input_channels, output_channels)
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
return hidden_states
class PerceiverAttention(nn.Module):
"""Attention module, including a dense block."""
def __init__(
self,
config,
is_cross_attention=False,
qk_channels=None,
v_channels=None,
num_heads=1,
q_dim=None,
kv_dim=None,
use_query_residual=True,
):
super().__init__()
# MultiHead attention
if is_cross_attention and qk_channels is None:
if config.cross_attention_shape_for_attention == "q":
qk_channels = q_dim
elif config.cross_attention_shape_for_attention == "kv":
qk_channels = kv_dim
else:
raise ValueError(
f"Unknown value {config.cross_attention_shape_for_attention} for "
"cross_attention_shape_for_attention."
)
else:
if qk_channels is None:
qk_channels = q_dim
if v_channels is None:
v_channels = qk_channels
self.self = PerceiverSelfAttention(
config,
is_cross_attention=is_cross_attention,
qk_channels=qk_channels,
v_channels=v_channels,
num_heads=num_heads,
q_dim=q_dim,
kv_dim=kv_dim,
)
# dense block
output_channels = None
if is_cross_attention:
output_channels = q_dim
else:
if output_channels is None:
output_channels = v_channels
self.output = PerceiverSelfOutput(config, input_channels=self.self.v_channels, output_channels=output_channels)
self.use_query_residual = use_query_residual
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs: Optional[torch.FloatTensor] = None,
inputs_mask: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
self_outputs = self.self(
hidden_states,
attention_mask,
head_mask,
inputs,
inputs_mask,
output_attentions,
)
# Output projection
attention_output = self.output(self_outputs[0])
# Optionally include a residual to the original queries.
# Consider omitting the residual if the semantics of query and output
# are different, e.g. if queries are positions and outputs are pixels.
if self.use_query_residual:
attention_output = attention_output + hidden_states
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
class PerceiverMLP(nn.Module):
"""A Transformer-style dense module to follow attention."""
def __init__(self, config, input_size, widening_factor):
super().__init__()
self.dense1 = nn.Linear(input_size, widening_factor * input_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
self.dense2 = nn.Linear(widening_factor * input_size, input_size)
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense1(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
hidden_states = self.dense2(hidden_states)
return hidden_states
class PerceiverLayer(nn.Module):
def __init__(
self,
config,
is_cross_attention=False,
qk_channels=None,
v_channels=None,
num_heads=1,
q_dim=None,
kv_dim=None,
widening_factor=4,
use_query_residual=True,
):
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = PerceiverAttention(
config,
is_cross_attention=is_cross_attention,
qk_channels=qk_channels,
v_channels=v_channels,
num_heads=num_heads,
q_dim=q_dim,
kv_dim=kv_dim,
use_query_residual=use_query_residual,
)
self.layernorm = nn.LayerNorm(q_dim)
self.mlp = PerceiverMLP(config, input_size=q_dim, widening_factor=widening_factor)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs: Optional[torch.FloatTensor] = None,
inputs_mask: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
inputs,
inputs_mask,
output_attentions,
)
attention_output = attention_outputs[0]
outputs = attention_outputs[1:] # add attentions if we output attention weights
layer_output = apply_chunking_to_forward(
self.feed_forward_chunk, self.chunk_size_feed_forward, self.seq_len_dim, attention_output
)
layer_output = layer_output + attention_output # residual connection
outputs = (layer_output,) + outputs
return outputs
def feed_forward_chunk(self, attention_output):
layer_output = self.layernorm(attention_output)
layer_output = self.mlp(layer_output)
return layer_output
class PerceiverEncoder(nn.Module):
"""The Perceiver Encoder: a scalable, fully attentional encoder."""
def __init__(self, config, kv_dim=None):
super().__init__()
self.config = config
# Check that we can use multihead-attention with these shapes.
if config.d_latents % config.num_self_attention_heads != 0:
raise ValueError(
f"num_z_channels ({config.d_latents}) must be divisible by"
f" num_self_attend_heads ({config.num_self_attention_heads})."
)
if config.d_latents % config.num_cross_attention_heads != 0:
raise ValueError(
f"num_z_channels ({config.d_latents}) must be divisible by"
f" num_cross_attend_heads ({config.num_cross_attention_heads})."
)
# Construct the cross attention layer.
self.cross_attention = PerceiverLayer(
config,
is_cross_attention=True,
qk_channels=config.qk_channels,
v_channels=config.v_channels,
num_heads=config.num_cross_attention_heads,
q_dim=config.d_latents,
kv_dim=kv_dim,
widening_factor=config.cross_attention_widening_factor,
use_query_residual=config.use_query_residual,
)
# Construct a single block of self-attention layers.
# We get deeper architectures by applying this block more than once.
self_attention_layers = []
for _ in range(config.num_self_attends_per_block):
layer = PerceiverLayer(
config,
is_cross_attention=False,
qk_channels=config.qk_channels,
v_channels=config.v_channels,
num_heads=config.num_self_attention_heads,
q_dim=config.d_latents,
kv_dim=config.d_latents,
widening_factor=config.self_attention_widening_factor,
)
self_attention_layers.append(layer)
self.self_attends = nn.ModuleList(self_attention_layers)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs: Optional[torch.FloatTensor] = None,
inputs_mask: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = False,
output_hidden_states: Optional[bool] = False,
return_dict: Optional[bool] = True,
) -> Union[Tuple, BaseModelOutputWithCrossAttentions]:
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions else None
# Apply the cross-attention between the latents (hidden_states) and inputs:
layer_outputs = self.cross_attention(
hidden_states,
attention_mask=attention_mask,
head_mask=None,
inputs=inputs,
inputs_mask=inputs_mask,
output_attentions=output_attentions,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_cross_attentions = all_cross_attentions + (layer_outputs[1],)
# Apply the block of self-attention layers more than once:
for _ in range(self.config.num_blocks):
for i, layer_module in enumerate(self.self_attends):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
layer_outputs = layer_module(
hidden_states,
attention_mask=attention_mask,
head_mask=layer_head_mask,
output_attentions=output_attentions,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [hidden_states, all_hidden_states, all_self_attentions, all_cross_attentions]
if v is not None
)
return BaseModelOutputWithCrossAttentions(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
class PerceiverPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = PerceiverConfig
base_model_prefix = "perceiver"
main_input_name = "inputs"
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, (nn.Linear, nn.Conv2d)):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif hasattr(module, "latents"):
module.latents.data.normal_(mean=0.0, std=self.config.initializer_range)
elif hasattr(module, "position_embeddings") and isinstance(module, PerceiverTrainablePositionEncoding):
module.position_embeddings.data.normal_(mean=0.0, std=self.config.initializer_range)
elif isinstance(module, nn.ParameterDict):
for modality in module.keys():
module[modality].data.normal_(mean=0.0, std=self.config.initializer_range)
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
PERCEIVER_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) sub-class. Use
it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`PerceiverConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
PERCEIVER_MODEL_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) sub-class. Use
it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`PerceiverConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
decoder (*DecoderType*, *optional*):
Optional decoder to use to decode the latent representation of the encoder. Examples include
*transformers.models.perceiver.modeling_perceiver.PerceiverBasicDecoder*,
*transformers.models.perceiver.modeling_perceiver.PerceiverClassificationDecoder*,
*transformers.models.perceiver.modeling_perceiver.PerceiverMultimodalDecoder*.
input_preprocessor (*PreprocessorType*, *optional*):
Optional input preprocessor to use. Examples include
*transformers.models.perceiver.modeling_perceiver.PerceiverImagePreprocessor*,
*transformers.models.perceiver.modeling_perceiver.PerceiverAudioPreprocessor*,
*transformers.models.perceiver.modeling_perceiver.PerceiverTextPreprocessor*,
*transformers.models.perceiver.modeling_perceiver.PerceiverMultimodalPreprocessor*.
output_postprocessor (*PostprocessorType*, *optional*):
Optional output postprocessor to use. Examples include
*transformers.models.perceiver.modeling_perceiver.PerceiverImagePostprocessor*,
*transformers.models.perceiver.modeling_perceiver.PerceiverAudioPostprocessor*,
*transformers.models.perceiver.modeling_perceiver.PerceiverClassificationPostprocessor*,
*transformers.models.perceiver.modeling_perceiver.PerceiverProjectionPostprocessor*,
*transformers.models.perceiver.modeling_perceiver.PerceiverMultimodalPostprocessor*.
Note that you can define your own decoders, preprocessors and/or postprocessors to fit your use-case.
"""
PERCEIVER_INPUTS_DOCSTRING = r"""
Args:
inputs (`torch.FloatTensor`):
Inputs to the perceiver. Can be anything: images, text, audio, video, etc.
attention_mask (`torch.FloatTensor` of shape `{0}`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"""The Perceiver: a scalable, fully attentional architecture.""",
PERCEIVER_MODEL_START_DOCSTRING,
)
class PerceiverModel(PerceiverPreTrainedModel):
def __init__(
self,
config,
decoder=None,
input_preprocessor: PreprocessorType = None,
output_postprocessor: PostprocessorType = None,
):
super().__init__(config)
self.config = config
self.input_preprocessor = input_preprocessor
self.output_postprocessor = output_postprocessor
self.embeddings = PerceiverEmbeddings(config)
self.encoder = PerceiverEncoder(
config, kv_dim=input_preprocessor.num_channels if input_preprocessor is not None else config.d_model
)
self.decoder = decoder
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.embeddings.latents
def set_input_embeddings(self, value):
self.embeddings.latents = value
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(PERCEIVER_INPUTS_DOCSTRING.format("(batch_size, sequence_length)"))
@replace_return_docstrings(output_type=PerceiverModelOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
inputs: torch.FloatTensor,
attention_mask: Optional[torch.FloatTensor] = None,
subsampled_output_points: Optional[Dict[str, torch.Tensor]] = None,
head_mask: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, PerceiverModelOutput]:
r"""
Returns:
Examples:
```python
>>> from transformers import PerceiverConfig, PerceiverTokenizer, PerceiverImageProcessor, PerceiverModel
>>> from transformers.models.perceiver.modeling_perceiver import (
... PerceiverTextPreprocessor,
... PerceiverImagePreprocessor,
... PerceiverClassificationDecoder,
... )
>>> import torch
>>> import requests
>>> from PIL import Image
>>> # EXAMPLE 1: using the Perceiver to classify texts
>>> # - we define a TextPreprocessor, which can be used to embed tokens
>>> # - we define a ClassificationDecoder, which can be used to decode the
>>> # final hidden states of the latents to classification logits
>>> # using trainable position embeddings
>>> config = PerceiverConfig()
>>> preprocessor = PerceiverTextPreprocessor(config)
>>> decoder = PerceiverClassificationDecoder(
... config,
... num_channels=config.d_latents,
... trainable_position_encoding_kwargs=dict(num_channels=config.d_latents, index_dims=1),
... use_query_residual=True,
... )
>>> model = PerceiverModel(config, input_preprocessor=preprocessor, decoder=decoder)
>>> # you can then do a forward pass as follows:
>>> tokenizer = PerceiverTokenizer()
>>> text = "hello world"
>>> inputs = tokenizer(text, return_tensors="pt").input_ids
>>> with torch.no_grad():
... outputs = model(inputs=inputs)
>>> logits = outputs.logits
>>> list(logits.shape)
[1, 2]
>>> # to train, one can train the model using standard cross-entropy:
>>> criterion = torch.nn.CrossEntropyLoss()
>>> labels = torch.tensor([1])
>>> loss = criterion(logits, labels)
>>> # EXAMPLE 2: using the Perceiver to classify images
>>> # - we define an ImagePreprocessor, which can be used to embed images
>>> config = PerceiverConfig(image_size=224)
>>> preprocessor = PerceiverImagePreprocessor(
... config,
... prep_type="conv1x1",
... spatial_downsample=1,
... out_channels=256,
... position_encoding_type="trainable",
... concat_or_add_pos="concat",
... project_pos_dim=256,
... trainable_position_encoding_kwargs=dict(
... num_channels=256,
... index_dims=config.image_size**2,
... ),
... )
>>> model = PerceiverModel(
... config,
... input_preprocessor=preprocessor,
... decoder=PerceiverClassificationDecoder(
... config,
... num_channels=config.d_latents,
... trainable_position_encoding_kwargs=dict(num_channels=config.d_latents, index_dims=1),
... use_query_residual=True,
... ),
... )
>>> # you can then do a forward pass as follows:
>>> image_processor = PerceiverImageProcessor()
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> inputs = image_processor(image, return_tensors="pt").pixel_values
>>> with torch.no_grad():
... outputs = model(inputs=inputs)
>>> logits = outputs.logits
>>> list(logits.shape)
[1, 2]
>>> # to train, one can train the model using standard cross-entropy:
>>> criterion = torch.nn.CrossEntropyLoss()
>>> labels = torch.tensor([1])
>>> loss = criterion(logits, labels)
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if self.input_preprocessor is not None:
inputs, modality_sizes, inputs_without_pos = self.input_preprocessor(inputs)
else:
modality_sizes = None
inputs_without_pos = None
if inputs.size()[-1] != self.config.d_model:
raise ValueError(
f"Last dimension of the inputs: {inputs.size()[-1]} doesn't correspond to config.d_model:"
f" {self.config.d_model}. Make sure to set config.d_model appropriately."
)
batch_size, seq_length, _ = inputs.size()
device = inputs.device
# If no attention mask is provided, make them all ones
if attention_mask is None:
attention_mask = torch.ones((batch_size, seq_length), device=device)
# Make the attention mask broadcastable to [batch_size, num_heads, seq_length, seq_length]
extended_attention_mask = self.invert_attention_mask(attention_mask)
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_blocks x num_heads]
# and head_mask is converted to shape [num_blocks x batch x num_heads x N x N]
head_mask = self.get_head_mask(head_mask, self.config.num_blocks * self.config.num_self_attends_per_block)
embedding_output = self.embeddings(batch_size=batch_size)
encoder_outputs = self.encoder(
embedding_output,
attention_mask=None,
head_mask=head_mask,
inputs=inputs,
inputs_mask=extended_attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
logits = None
if self.decoder:
if subsampled_output_points is not None:
output_modality_sizes = {
"audio": subsampled_output_points["audio"].shape[0],
"image": subsampled_output_points["image"].shape[0],
"label": 1,
}
else:
output_modality_sizes = modality_sizes
decoder_query = self.decoder.decoder_query(
inputs, modality_sizes, inputs_without_pos, subsampled_points=subsampled_output_points
)
decoder_outputs = self.decoder(
decoder_query,
z=sequence_output,
query_mask=extended_attention_mask,
output_attentions=output_attentions,
)
logits = decoder_outputs.logits
# add cross-attentions of decoder
if output_attentions and decoder_outputs.cross_attentions is not None:
if return_dict:
encoder_outputs.cross_attentions = (
encoder_outputs.cross_attentions + decoder_outputs.cross_attentions
)
else:
encoder_outputs = encoder_outputs + decoder_outputs.cross_attentions
if self.output_postprocessor:
logits = self.output_postprocessor(logits, modality_sizes=output_modality_sizes)
if not return_dict:
if logits is not None:
return (logits, sequence_output) + encoder_outputs[1:]
else:
return (sequence_output,) + encoder_outputs[1:]
return PerceiverModelOutput(
logits=logits,
last_hidden_state=sequence_output,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
@add_start_docstrings("""Example use of Perceiver for masked language modeling.""", PERCEIVER_START_DOCSTRING)
class PerceiverForMaskedLM(PerceiverPreTrainedModel):
def __init__(self, config: PerceiverConfig):
super().__init__(config)
text_preprocessor = PerceiverTextPreprocessor(config)
trainable_position_encoding_kwargs_decoder = {
"num_channels": text_preprocessor.num_channels,
"index_dims": config.max_position_embeddings,
}
self.perceiver = PerceiverModel(
config,
input_preprocessor=text_preprocessor,
decoder=PerceiverBasicDecoder(
config,
output_num_channels=config.d_latents,
output_index_dims=config.max_position_embeddings, # we need to define the seq_len of the inputs beforehand
num_channels=text_preprocessor.num_channels,
qk_channels=8 * 32,
v_channels=text_preprocessor.num_channels,
num_heads=8,
use_query_residual=False,
final_project=False,
trainable_position_encoding_kwargs=trainable_position_encoding_kwargs_decoder,
),
)
self.embedding_decoder = PerceiverEmbeddingDecoder(config)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(PERCEIVER_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=PerceiverMaskedLMOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
inputs: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
labels: Optional[torch.Tensor] = None,
return_dict: Optional[bool] = None,
input_ids: Optional[torch.Tensor] = None,
) -> Union[Tuple, PerceiverMaskedLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
Returns:
Examples:
```python
>>> from transformers import AutoTokenizer, PerceiverForMaskedLM
>>> import torch
>>> tokenizer = AutoTokenizer.from_pretrained("deepmind/language-perceiver")
>>> model = PerceiverForMaskedLM.from_pretrained("deepmind/language-perceiver")
>>> # training
>>> text = "This is an incomplete sentence where some words are missing."
>>> inputs = tokenizer(text, padding="max_length", return_tensors="pt")
>>> # mask " missing."
>>> inputs["input_ids"][0, 52:61] = tokenizer.mask_token_id
>>> labels = tokenizer(text, padding="max_length", return_tensors="pt").input_ids
>>> outputs = model(**inputs, labels=labels)
>>> loss = outputs.loss
>>> round(loss.item(), 2)
19.87
>>> logits = outputs.logits
>>> list(logits.shape)
[1, 2048, 262]
>>> # inference
>>> text = "This is an incomplete sentence where some words are missing."
>>> encoding = tokenizer(text, padding="max_length", return_tensors="pt")
>>> # mask bytes corresponding to " missing.". Note that the model performs much better if the masked span starts with a space.
>>> encoding["input_ids"][0, 52:61] = tokenizer.mask_token_id
>>> # forward pass
>>> with torch.no_grad():
... outputs = model(**encoding)
>>> logits = outputs.logits
>>> list(logits.shape)
[1, 2048, 262]
>>> masked_tokens_predictions = logits[0, 52:61].argmax(dim=-1).tolist()
>>> tokenizer.decode(masked_tokens_predictions)
' missing.'
```"""
if inputs is not None and input_ids is not None:
raise ValueError("You cannot use both `inputs` and `input_ids`")
elif inputs is None and input_ids is not None:
inputs = input_ids
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.perceiver(
inputs=inputs,
attention_mask=attention_mask,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
logits = self.embedding_decoder(
outputs.logits if return_dict else outputs[0], embedding_layer=self.perceiver.input_preprocessor.embeddings
)
masked_lm_loss = None
if labels is not None:
loss_fct = CrossEntropyLoss() # -100 index = padding token
masked_lm_loss = loss_fct(logits.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[2:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return PerceiverMaskedLMOutput(
loss=masked_lm_loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
@add_start_docstrings("""Example use of Perceiver for text classification.""", PERCEIVER_START_DOCSTRING)
class PerceiverForSequenceClassification(PerceiverPreTrainedModel):
def __init__(self, config):
super().__init__(config)
trainable_position_encoding_kwargs_decoder = {"num_channels": config.d_latents, "index_dims": 1}
self.num_labels = config.num_labels
self.perceiver = PerceiverModel(
config,
input_preprocessor=PerceiverTextPreprocessor(config),
decoder=PerceiverClassificationDecoder(
config,
num_channels=config.d_latents,
trainable_position_encoding_kwargs=trainable_position_encoding_kwargs_decoder,
use_query_residual=True,
),
)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(PERCEIVER_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=PerceiverClassifierOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
inputs: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
labels: Optional[torch.Tensor] = None,
return_dict: Optional[bool] = None,
input_ids: Optional[torch.Tensor] = None,
) -> Union[Tuple, PerceiverClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the classification/regression loss. Indices should be in `[0, ..., config.num_labels -
1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If `config.num_labels >
1` a classification loss is computed (Cross-Entropy).
Returns:
Examples:
```python
>>> from transformers import AutoTokenizer, PerceiverForSequenceClassification
>>> tokenizer = AutoTokenizer.from_pretrained("deepmind/language-perceiver")
>>> model = PerceiverForSequenceClassification.from_pretrained("deepmind/language-perceiver")
>>> text = "hello world"
>>> inputs = tokenizer(text, return_tensors="pt").input_ids
>>> outputs = model(inputs=inputs)
>>> logits = outputs.logits
>>> list(logits.shape)
[1, 2]
```"""
if inputs is not None and input_ids is not None:
raise ValueError("You cannot use both `inputs` and `input_ids`")
elif inputs is None and input_ids is not None:
inputs = input_ids
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.perceiver(
inputs=inputs,
attention_mask=attention_mask,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
logits = outputs.logits if return_dict else outputs[0]
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return PerceiverClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
@add_start_docstrings(
"""
Example use of Perceiver for image classification, for tasks such as ImageNet.
This model uses learned position embeddings. In other words, this model is not given any privileged information about
the structure of images. As shown in the paper, this model can achieve a top-1 accuracy of 72.7 on ImageNet.
[`PerceiverForImageClassificationLearned`] uses [`~models.perceiver.modeling_perceiver.PerceiverImagePreprocessor`]
(with `prep_type="conv1x1"`) to preprocess the input images, and
[`~models.perceiver.modeling_perceiver.PerceiverClassificationDecoder`] to decode the latent representation of
[`PerceiverModel`] into classification logits.
""",
PERCEIVER_START_DOCSTRING,
)
class PerceiverForImageClassificationLearned(PerceiverPreTrainedModel):
def __init__(self, config):
super().__init__(config)
trainable_position_encoding_kwargs_preprocessor = {"num_channels": 256, "index_dims": config.image_size**2}
trainable_position_encoding_kwargs_decoder = {"num_channels": config.d_latents, "index_dims": 1}
self.num_labels = config.num_labels
self.perceiver = PerceiverModel(
config,
input_preprocessor=PerceiverImagePreprocessor(
config,
prep_type="conv1x1",
spatial_downsample=1,
out_channels=256,
position_encoding_type="trainable",
concat_or_add_pos="concat",
project_pos_dim=256,
trainable_position_encoding_kwargs=trainable_position_encoding_kwargs_preprocessor,
),
decoder=PerceiverClassificationDecoder(
config,
num_channels=config.d_latents,
trainable_position_encoding_kwargs=trainable_position_encoding_kwargs_decoder,
use_query_residual=True,
),
)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(PERCEIVER_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=PerceiverClassifierOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
inputs: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
labels: Optional[torch.Tensor] = None,
return_dict: Optional[bool] = None,
pixel_values: Optional[torch.Tensor] = None,
) -> Union[Tuple, PerceiverClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the image classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
Returns:
Examples:
```python
>>> from transformers import AutoImageProcessor, PerceiverForImageClassificationLearned
>>> from PIL import Image
>>> import requests
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> image_processor = AutoImageProcessor.from_pretrained("deepmind/vision-perceiver-learned")
>>> model = PerceiverForImageClassificationLearned.from_pretrained("deepmind/vision-perceiver-learned")
>>> inputs = image_processor(images=image, return_tensors="pt").pixel_values
>>> outputs = model(inputs=inputs)
>>> logits = outputs.logits
>>> list(logits.shape)
[1, 1000]
>>> # model predicts one of the 1000 ImageNet classes
>>> predicted_class_idx = logits.argmax(-1).item()
>>> print("Predicted class:", model.config.id2label[predicted_class_idx])
Predicted class: tabby, tabby cat
```"""
if inputs is not None and pixel_values is not None:
raise ValueError("You cannot use both `inputs` and `pixel_values`")
elif inputs is None and pixel_values is not None:
inputs = pixel_values
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.perceiver(
inputs=inputs,
attention_mask=attention_mask,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
logits = outputs.logits if return_dict else outputs[0]
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return PerceiverClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
@add_start_docstrings(
"""
Example use of Perceiver for image classification, for tasks such as ImageNet.
This model uses fixed 2D Fourier position embeddings. As shown in the paper, this model can achieve a top-1 accuracy of
79.0 on ImageNet, and 84.5 when pre-trained on a large-scale dataset (i.e. JFT).
[`PerceiverForImageClassificationLearned`] uses [`~models.perceiver.modeling_perceiver.PerceiverImagePreprocessor`]
(with `prep_type="pixels"`) to preprocess the input images, and
[`~models.perceiver.modeling_perceiver.PerceiverClassificationDecoder`] to decode the latent representation of
[`PerceiverModel`] into classification logits.
""",
PERCEIVER_START_DOCSTRING,
)
class PerceiverForImageClassificationFourier(PerceiverPreTrainedModel):
def __init__(self, config):
super().__init__(config)
fourier_position_encoding_kwargs_preprocessor = {
"concat_pos": True,
"max_resolution": (224, 224),
"num_bands": 64,
"sine_only": False,
}
trainable_position_encoding_kwargs_decoder = {"num_channels": config.d_latents, "index_dims": 1}
self.num_labels = config.num_labels
self.perceiver = PerceiverModel(
config,
input_preprocessor=PerceiverImagePreprocessor(
config,
prep_type="pixels",
spatial_downsample=1,
fourier_position_encoding_kwargs=fourier_position_encoding_kwargs_preprocessor,
),
decoder=PerceiverClassificationDecoder(
config,
num_channels=config.d_latents,
trainable_position_encoding_kwargs=trainable_position_encoding_kwargs_decoder,
use_query_residual=True,
),
)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(PERCEIVER_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=PerceiverClassifierOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
inputs: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
labels: Optional[torch.Tensor] = None,
return_dict: Optional[bool] = None,
pixel_values: Optional[torch.Tensor] = None,
) -> Union[Tuple, PerceiverClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the image classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
Returns:
Examples:
```python
>>> from transformers import AutoImageProcessor, PerceiverForImageClassificationFourier
>>> from PIL import Image
>>> import requests
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> image_processor = AutoImageProcessor.from_pretrained("deepmind/vision-perceiver-fourier")
>>> model = PerceiverForImageClassificationFourier.from_pretrained("deepmind/vision-perceiver-fourier")
>>> inputs = image_processor(images=image, return_tensors="pt").pixel_values
>>> outputs = model(inputs=inputs)
>>> logits = outputs.logits
>>> list(logits.shape)
[1, 1000]
>>> # model predicts one of the 1000 ImageNet classes
>>> predicted_class_idx = logits.argmax(-1).item()
>>> print("Predicted class:", model.config.id2label[predicted_class_idx])
Predicted class: tabby, tabby cat
```"""
if inputs is not None and pixel_values is not None:
raise ValueError("You cannot use both `inputs` and `pixel_values`")
elif inputs is None and pixel_values is not None:
inputs = pixel_values
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.perceiver(
inputs=inputs,
attention_mask=attention_mask,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
logits = outputs.logits if return_dict else outputs[0]
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return PerceiverClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
@add_start_docstrings(
"""
Example use of Perceiver for image classification, for tasks such as ImageNet.
This model uses a 2D conv+maxpool preprocessing network. As shown in the paper, this model can achieve a top-1 accuracy
of 82.1 on ImageNet.
[`PerceiverForImageClassificationLearned`] uses [`~models.perceiver.modeling_perceiver.PerceiverImagePreprocessor`]
(with `prep_type="conv"`) to preprocess the input images, and
[`~models.perceiver.modeling_perceiver.PerceiverClassificationDecoder`] to decode the latent representation of
[`PerceiverModel`] into classification logits.
""",
PERCEIVER_START_DOCSTRING,
)
class PerceiverForImageClassificationConvProcessing(PerceiverPreTrainedModel):
def __init__(self, config):
super().__init__(config)
fourier_position_encoding_kwargs_preprocessor = {
"concat_pos": True,
"max_resolution": (56, 56),
"num_bands": 64,
"sine_only": False,
}
trainable_position_encoding_kwargs_decoder = {"num_channels": config.d_latents, "index_dims": 1}
self.num_labels = config.num_labels
self.perceiver = PerceiverModel(
config,
input_preprocessor=PerceiverImagePreprocessor(
config,
prep_type="conv",
spatial_downsample=1,
position_encoding_type="fourier",
fourier_position_encoding_kwargs=fourier_position_encoding_kwargs_preprocessor,
),
decoder=PerceiverClassificationDecoder(
config,
num_channels=config.d_latents,
trainable_position_encoding_kwargs=trainable_position_encoding_kwargs_decoder,
use_query_residual=True,
),
)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(PERCEIVER_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=PerceiverClassifierOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
inputs: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
labels: Optional[torch.Tensor] = None,
return_dict: Optional[bool] = None,
pixel_values: Optional[torch.Tensor] = None,
) -> Union[Tuple, PerceiverClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the image classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
Returns:
Examples:
```python
>>> from transformers import AutoImageProcessor, PerceiverForImageClassificationConvProcessing
>>> from PIL import Image
>>> import requests
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> image_processor = AutoImageProcessor.from_pretrained("deepmind/vision-perceiver-conv")
>>> model = PerceiverForImageClassificationConvProcessing.from_pretrained("deepmind/vision-perceiver-conv")
>>> inputs = image_processor(images=image, return_tensors="pt").pixel_values
>>> outputs = model(inputs=inputs)
>>> logits = outputs.logits
>>> list(logits.shape)
[1, 1000]
>>> # model predicts one of the 1000 ImageNet classes
>>> predicted_class_idx = logits.argmax(-1).item()
>>> print("Predicted class:", model.config.id2label[predicted_class_idx])
Predicted class: tabby, tabby cat
```"""
if inputs is not None and pixel_values is not None:
raise ValueError("You cannot use both `inputs` and `pixel_values`")
elif inputs is None and pixel_values is not None:
inputs = pixel_values
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.perceiver(
inputs=inputs,
attention_mask=attention_mask,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
logits = outputs.logits if return_dict else outputs[0]
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return PerceiverClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
@add_start_docstrings(
"""
Example use of Perceiver for optical flow, for tasks such as Sintel and KITTI. [`PerceiverForOpticalFlow`] uses
[`~models.perceiver.modeling_perceiver.PerceiverImagePreprocessor`] (with *prep_type="patches"*) to preprocess the
input images, and [`~models.perceiver.modeling_perceiver.PerceiverOpticalFlowDecoder`] to decode the latent
representation of [`PerceiverModel`].
As input, one concatenates 2 subsequent frames along the channel dimension and extract a 3 x 3 patch around each pixel
(leading to 3 x 3 x 3 x 2 = 54 values for each pixel). Fixed Fourier position encodings are used to encode the position
of each pixel in the patch. Next, one applies the Perceiver encoder. To decode, one queries the latent representation
using the same encoding used for the input.
""",
PERCEIVER_START_DOCSTRING,
)
class PerceiverForOpticalFlow(PerceiverPreTrainedModel):
def __init__(self, config):
super().__init__(config)
fourier_position_encoding_kwargs_preprocessor = {
"num_bands": 64,
"max_resolution": config.train_size,
"sine_only": False,
"concat_pos": True,
}
fourier_position_encoding_kwargs_decoder = {
"concat_pos": True,
"max_resolution": config.train_size,
"num_bands": 64,
"sine_only": False,
}
image_preprocessor = PerceiverImagePreprocessor(
config,
prep_type="patches",
spatial_downsample=1,
conv_after_patching=True,
conv_after_patching_in_channels=54,
temporal_downsample=2,
position_encoding_type="fourier",
# position_encoding_kwargs
fourier_position_encoding_kwargs=fourier_position_encoding_kwargs_preprocessor,
)
self.perceiver = PerceiverModel(
config,
input_preprocessor=image_preprocessor,
decoder=PerceiverOpticalFlowDecoder(
config,
num_channels=image_preprocessor.num_channels,
output_image_shape=config.train_size,
rescale_factor=100.0,
# decoder kwargs
use_query_residual=False,
output_num_channels=2,
# We query the decoder using the first frame features
# rather than a standard decoder position encoding.
position_encoding_type="fourier",
fourier_position_encoding_kwargs=fourier_position_encoding_kwargs_decoder,
),
)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(PERCEIVER_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=PerceiverClassifierOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
inputs: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
labels: Optional[torch.Tensor] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, PerceiverClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the optical flow loss. Indices should be in `[0, ..., config.num_labels - 1]`.
Returns:
Examples:
```python
>>> from transformers import PerceiverForOpticalFlow
>>> import torch
>>> model = PerceiverForOpticalFlow.from_pretrained("deepmind/optical-flow-perceiver")
>>> # in the Perceiver IO paper, the authors extract a 3 x 3 patch around each pixel,
>>> # leading to 3 x 3 x 3 = 27 values for each pixel (as each pixel also has 3 color channels)
>>> # patches have shape (batch_size, num_frames, num_channels, height, width)
>>> # the authors train on resolutions of 368 x 496
>>> patches = torch.randn(1, 2, 27, 368, 496)
>>> outputs = model(inputs=patches)
>>> logits = outputs.logits
>>> list(logits.shape)
[1, 368, 496, 2]
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.perceiver(
inputs=inputs,
attention_mask=attention_mask,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
logits = outputs.logits if return_dict else outputs[0]
loss = None
if labels is not None:
raise NotImplementedError("Optical flow training is not yet supported")
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return PerceiverClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
@add_start_docstrings(
"""
Example use of Perceiver for multimodal (video) autoencoding, for tasks such as Kinetics-700.
[`PerceiverForMultimodalAutoencoding`] uses [`~models.perceiver.modeling_perceiver.PerceiverMultimodalPreprocessor`] to
preprocess the 3 modalities: images, audio and class labels. This preprocessor uses modality-specific preprocessors to
preprocess every modality separately, after which they are concatenated. Trainable position embeddings are used to pad
each modality to the same number of channels to make concatenation along the time dimension possible. Next, one applies
the Perceiver encoder.
[`~models.perceiver.modeling_perceiver.PerceiverMultimodalDecoder`] is used to decode the latent representation of
[`PerceiverModel`]. This decoder uses each modality-specific decoder to construct queries. The decoder queries are
created based on the inputs after preprocessing. However, autoencoding an entire video in a single forward pass is
computationally infeasible, hence one only uses parts of the decoder queries to do cross-attention with the latent
representation. This is determined by the subsampled indices for each modality, which can be provided as additional
input to the forward pass of [`PerceiverForMultimodalAutoencoding`].
[`~models.perceiver.modeling_perceiver.PerceiverMultimodalDecoder`] also pads the decoder queries of the different
modalities to the same number of channels, in order to concatenate them along the time dimension. Next, cross-attention
is performed with the latent representation of [`PerceiverModel`].
Finally, [`~models.perceiver.modeling_perceiver.PerceiverMultiModalPostprocessor`] is used to turn this tensor into an
actual video. It first splits up the output into the different modalities, and then applies the respective
postprocessor for each modality.
Note that, by masking the classification label during evaluation (i.e. simply providing a tensor of zeros for the
"label" modality), this auto-encoding model becomes a Kinetics 700 video classifier.
""",
PERCEIVER_START_DOCSTRING,
)
class PerceiverForMultimodalAutoencoding(PerceiverPreTrainedModel):
def __init__(self, config: PerceiverConfig):
super().__init__(config)
n_audio_samples = config.num_frames * config.audio_samples_per_frame
input_preprocessor = PerceiverMultimodalPreprocessor(
min_padding_size=4,
modalities={
"audio": PerceiverAudioPreprocessor(
config,
position_encoding_type="fourier",
fourier_position_encoding_kwargs={
"num_bands": 192,
"max_resolution": (n_audio_samples,),
"sine_only": False,
"concat_pos": True,
},
prep_type="patches",
samples_per_patch=config.samples_per_patch,
),
"image": PerceiverImagePreprocessor(
config,
position_encoding_type="fourier",
fourier_position_encoding_kwargs={
"num_bands": 32,
"max_resolution": (config.num_frames, config.image_size, config.image_size),
"sine_only": False,
"concat_pos": True,
},
prep_type="patches",
spatial_downsample=4,
temporal_downsample=1,
),
"label": PerceiverOneHotPreprocessor(config),
},
mask_probs={"image": 0.0, "audio": 0.0, "label": 1.0},
)
image_decoder = PerceiverBasicVideoAutoencodingDecoder(
config,
# Autoencoding, don't pass inputs to the queries.
concat_preprocessed_input=False,
output_shape=config.output_shape,
output_num_channels=config.output_num_channels,
use_query_residual=False,
position_encoding_only=True,
position_encoding_type="fourier",
fourier_position_encoding_kwargs={
"num_bands": 32,
"max_resolution": (config.num_frames, config.image_size, config.image_size),
"sine_only": False,
"concat_pos": True,
},
)
decoder = PerceiverMultimodalDecoder(
config,
# Autoencoding, don't pass inputs to the queries.
concat_preprocessed_input=False,
# Modality specific decoders are used ONLY to generate queries.
# All modalties are decoded together using a unified decoder.
modalities={
"audio": PerceiverBasicDecoder(
config,
# Autoencoding, don't pass inputs to the queries.
concat_preprocessed_input=False,
output_index_dims=(n_audio_samples // config.samples_per_patch,),
output_num_channels=config.output_num_channels,
use_query_residual=False,
position_encoding_only=True,
position_encoding_type="fourier",
fourier_position_encoding_kwargs={
"num_bands": 192,
"max_resolution": (n_audio_samples,),
"sine_only": False,
"concat_pos": True,
},
),
"image": image_decoder,
"label": PerceiverClassificationDecoder(
config,
# Autoencoding, don't pass inputs to the queries.
concat_preprocessed_input=False,
use_query_residual=False,
position_encoding_only=True,
position_encoding_type="trainable",
trainable_position_encoding_kwargs={
"num_channels": config._label_trainable_num_channels,
"index_dims": 1,
},
),
},
num_outputs=None,
output_num_channels=config.output_num_channels,
use_query_residual=False,
)
output_postprocessor = PerceiverMultimodalPostprocessor(
modalities={
"audio": PerceiverAudioPostprocessor(config, in_channels=config.output_num_channels),
"image": PerceiverProjectionPostprocessor(in_channels=config.output_num_channels, out_channels=3),
"label": PerceiverClassificationPostprocessor(config, in_channels=config.output_num_channels),
}
)
self.perceiver = PerceiverModel(
config,
input_preprocessor=input_preprocessor,
decoder=decoder,
output_postprocessor=output_postprocessor,
)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(PERCEIVER_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=PerceiverClassifierOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
inputs: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
subsampled_output_points: Optional[Dict[str, torch.Tensor]] = None,
head_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
labels: Optional[torch.Tensor] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, PerceiverClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the image classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
Returns:
Examples:
```python
>>> from transformers import PerceiverForMultimodalAutoencoding
>>> import torch
>>> import numpy as np
>>> # create multimodal inputs
>>> images = torch.randn((1, 16, 3, 224, 224))
>>> audio = torch.randn((1, 30720, 1))
>>> inputs = dict(image=images, audio=audio, label=torch.zeros((images.shape[0], 700)))
>>> model = PerceiverForMultimodalAutoencoding.from_pretrained("deepmind/multimodal-perceiver")
>>> # in the Perceiver IO paper, videos are auto-encoded in chunks
>>> # each chunk subsamples different index dimensions of the image and audio modality decoder queries
>>> nchunks = 128
>>> image_chunk_size = np.prod((16, 224, 224)) // nchunks
>>> audio_chunk_size = audio.shape[1] // model.config.samples_per_patch // nchunks
>>> # process the first chunk
>>> chunk_idx = 0
>>> subsampling = {
... "image": torch.arange(image_chunk_size * chunk_idx, image_chunk_size * (chunk_idx + 1)),
... "audio": torch.arange(audio_chunk_size * chunk_idx, audio_chunk_size * (chunk_idx + 1)),
... "label": None,
... }
>>> outputs = model(inputs=inputs, subsampled_output_points=subsampling)
>>> logits = outputs.logits
>>> list(logits["audio"].shape)
[1, 240]
>>> list(logits["image"].shape)
[1, 6272, 3]
>>> list(logits["label"].shape)
[1, 700]
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.perceiver(
inputs=inputs,
attention_mask=attention_mask,
subsampled_output_points=subsampled_output_points,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
logits = outputs.logits if return_dict else outputs[0]
loss = None
if labels is not None:
raise NotImplementedError("Multimodal autoencoding training is not yet supported")
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return PerceiverClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
# Below: position encodings
def build_position_encoding(
position_encoding_type,
out_channels=None,
project_pos_dim=-1,
trainable_position_encoding_kwargs=None,
fourier_position_encoding_kwargs=None,
):
"""
Builds the position encoding.
Args:
- out_channels: refers to the number of channels of the position encodings.
- project_pos_dim: if specified, will project the position encodings to this dimension.
"""
if position_encoding_type == "trainable":
if not trainable_position_encoding_kwargs:
raise ValueError("Make sure to pass trainable_position_encoding_kwargs")
output_pos_enc = PerceiverTrainablePositionEncoding(**trainable_position_encoding_kwargs)
elif position_encoding_type == "fourier":
# We don't use the index_dims argument, as this is only known during the forward pass
if not fourier_position_encoding_kwargs:
raise ValueError("Make sure to pass fourier_position_encoding_kwargs")
output_pos_enc = PerceiverFourierPositionEncoding(**fourier_position_encoding_kwargs)
else:
raise ValueError(f"Unknown position encoding type: {position_encoding_type}.")
# Optionally, project the position encoding to a target dimension:
positions_projection = nn.Linear(out_channels, project_pos_dim) if project_pos_dim > 0 else nn.Identity()
return output_pos_enc, positions_projection
# Below: Perceiver decoders
class PerceiverAbstractDecoder(nn.Module, metaclass=abc.ABCMeta):
"""Perceiver abstract decoder."""
@abc.abstractmethod
def decoder_query(self, inputs, modality_sizes=None, inputs_without_pos=None, subsampled_points=None):
raise NotImplementedError
@property
@abc.abstractmethod
def num_query_channels(self):
raise NotImplementedError
@abc.abstractmethod
def forward(self, query, z, query_mask=None):
raise NotImplementedError
class PerceiverProjectionDecoder(PerceiverAbstractDecoder):
"""
Baseline projection decoder (no cross-attention).
Args:
config ([`PerceiverConfig`]):
Model configuration.
"""
def __init__(self, config):
super().__init__()
self.classifier = nn.Linear(config.d_latents, config.num_labels)
def decoder_query(self, inputs, modality_sizes=None, inputs_without_pos=None, subsampled_points=None):
return None
def forward(
self, query: torch.Tensor, z: torch.FloatTensor, query_mask: Optional[torch.FloatTensor] = None
) -> torch.FloatTensor:
# (batch_size, num_latents, d_latents) -> (batch_size, d_latents)
z = torch.mean(z, dim=1)
# (batch_size, d_latents) -> (batch_size, config.num_labels)
logits = self.classifier(z)
return logits
class PerceiverBasicDecoder(PerceiverAbstractDecoder):
"""
Cross-attention-based decoder. This class can be used to decode the final hidden states of the latents using a
cross-attention operation, in which the latents produce keys and values.
The shape of the output of this class depends on how one defines the output queries (also called decoder queries).
Args:
config ([*PerceiverConfig*]):
Model configuration.
output_num_channels (`int`, *optional*):
The number of channels in the output. Will only be used in case *final_project* is set to `True`.
position_encoding_type (`str`, *optional*, defaults to "trainable"):
The type of position encoding to use. Can be either "trainable", "fourier", or "none".
output_index_dims (`int`, *optional*):
The number of dimensions of the output queries. Ignored if 'position_encoding_type' == 'none'.
num_channels (`int`, *optional*, defaults to 128):
The number of channels of the decoder queries. Ignored if 'position_encoding_type' == 'none'.
qk_channels (`int`, *optional*):
The number of channels of the queries and keys in the cross-attention layer.
v_channels (`int`, *optional*):
The number of channels of the values in the cross-attention layer.
num_heads (`int`, *optional*, defaults to 1):
The number of attention heads in the cross-attention layer.
widening_factor (`int`, *optional*, defaults to 1):
The widening factor of the cross-attention layer.
use_query_residual (`bool`, *optional*, defaults to `False`):
Whether to use a residual connection between the query and the output of the cross-attention layer.
concat_preprocessed_input (`bool`, *optional*, defaults to `False`):
Whether to concatenate the preprocessed input to the query.
final_project (`bool`, *optional*, defaults to `True`):
Whether to project the output of the cross-attention layer to a target dimension.
position_encoding_only (`bool`, *optional*, defaults to `False`):
Whether to only use this class to define output queries.
"""
def __init__(
self,
config: PerceiverConfig,
output_num_channels: int,
position_encoding_type: Optional[str] = "trainable",
# The following 2 arguments are ignored if position_encoding_type == 'none':
output_index_dims: Optional[int] = None,
num_channels: Optional[int] = 128,
subsampled_index_dims: Optional[int] = None,
qk_channels: Optional[int] = None,
v_channels: Optional[int] = None,
num_heads: Optional[int] = 1,
widening_factor: Optional[int] = 1,
use_query_residual: Optional[bool] = False,
concat_preprocessed_input: Optional[bool] = False,
final_project: Optional[bool] = True,
position_encoding_only: Optional[bool] = False,
**position_encoding_kwargs,
) -> None:
super().__init__()
self.output_num_channels = output_num_channels
# If `none`, the decoder will not construct any position encodings.
# You should construct your own when querying the decoder.
self.output_position_encodings = None
self.position_encoding_type = position_encoding_type
self.position_encoding_kwargs = position_encoding_kwargs
if position_encoding_type != "none":
self.output_position_encodings, self.positions_projection = build_position_encoding(
position_encoding_type=position_encoding_type, **position_encoding_kwargs
)
self.output_index_dims = output_index_dims
self.num_channels = num_channels
if subsampled_index_dims is None:
subsampled_index_dims = output_index_dims
self.subsampled_index_dims = subsampled_index_dims
self.concat_preprocessed_input = concat_preprocessed_input
self.final_project = final_project
self.position_encoding_only = position_encoding_only
# for multimodal autoencoding, we don't need the decoder cross-attention and final layer
# so then we will set position_encoding_only to True
if not self.position_encoding_only:
self.decoding_cross_attention = PerceiverLayer(
config,
is_cross_attention=True,
qk_channels=qk_channels,
v_channels=v_channels,
num_heads=num_heads,
q_dim=num_channels,
kv_dim=config.d_latents,
widening_factor=widening_factor,
use_query_residual=use_query_residual,
)
self.final_layer = nn.Linear(num_channels, output_num_channels) if final_project else nn.Identity()
@property
def num_query_channels(self) -> int:
if self.position_encoding_type == "none": # Queries come from elsewhere
raise ValueError(
"You cannot calculate number of decoder query channels when position_encoding_type is set to none"
)
if self.position_encoding_only:
if "project_pos_dim" in self.position_encoding_kwargs:
return self.position_encoding_kwargs["project_pos_dim"]
return self.output_position_encodings.output_size()
if self.final_project:
return self.output_num_channels
return self.num_channels
def decoder_query(self, inputs, modality_sizes=None, inputs_without_pos=None, subsampled_points=None):
if self.position_encoding_type == "none": # Queries come from elsewhere
raise ValueError("You cannot construct decoder queries when position_encoding_type is set to none")
if subsampled_points is not None:
# subsampled_points are the indices if the inputs would be flattened
# however, the inputs aren't flattened, that's why we use unravel_index
# to get the indices for the unflattened array
# unravel_index returns a tuple (x_idx, y_idx, ...)
# stack to get the [n, d] tensor of coordinates
indices = [torch.from_numpy(x) for x in np.unravel_index(subsampled_points.cpu(), self.output_index_dims)]
pos = torch.stack(indices, dim=1)
batch_size = inputs.shape[0]
# Map these coordinates to [-1, 1]
pos = -1 + 2 * pos / torch.tensor(self.output_index_dims)[None, :]
pos = torch.broadcast_to(pos[None], [batch_size, pos.shape[0], pos.shape[1]])
# Construct the position encoding.
if self.position_encoding_type == "trainable":
pos_emb = self.output_position_encodings(batch_size)
elif self.position_encoding_type == "fourier":
pos_emb = self.output_position_encodings(
self.output_index_dims, batch_size=batch_size, device=inputs.device, dtype=inputs.dtype, pos=pos
)
# Optionally project them to a target dimension.
pos_emb = self.positions_projection(pos_emb)
pos_emb = torch.reshape(pos_emb, [pos_emb.shape[0], -1, pos_emb.shape[-1]])
else:
batch_size = inputs.shape[0]
index_dims = inputs.shape[2:]
# Construct the position encoding.
if self.position_encoding_type == "trainable":
pos_emb = self.output_position_encodings(batch_size)
elif self.position_encoding_type == "fourier":
pos_emb = self.output_position_encodings(
index_dims, batch_size, device=inputs.device, dtype=inputs.dtype
)
# Optionally project them to a target dimension.
pos_emb = self.positions_projection(pos_emb)
if self.concat_preprocessed_input:
if inputs_without_pos is None:
raise ValueError("Value is required for inputs_without_pos if concat_preprocessed_input is True")
pos_emb = torch.cat([inputs_without_pos, pos_emb], dim=-1)
return pos_emb
def forward(
self,
query: torch.Tensor,
z: torch.FloatTensor,
query_mask: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = False,
) -> PerceiverDecoderOutput:
# Cross-attention decoding.
# key, value: B x N x K; query: B x M x K
# Attention maps -> B x N x M
# Output -> B x M x K
cross_attentions = () if output_attentions else None
layer_outputs = self.decoding_cross_attention(
query,
attention_mask=query_mask,
head_mask=None,
inputs=z,
inputs_mask=None,
output_attentions=output_attentions,
)
output = layer_outputs[0]
if output_attentions:
cross_attentions = cross_attentions + (layer_outputs[1],)
logits = self.final_layer(output)
return PerceiverDecoderOutput(logits=logits, cross_attentions=cross_attentions)
class PerceiverClassificationDecoder(PerceiverAbstractDecoder):
"""
Cross-attention based classification decoder. Light-weight wrapper of [`PerceiverBasicDecoder`] for logit output.
Will turn the output of the Perceiver encoder which is of shape (batch_size, num_latents, d_latents) to a tensor of
shape (batch_size, num_labels). The queries are of shape (batch_size, 1, num_labels).
Args:
config ([`PerceiverConfig`]):
Model configuration.
"""
def __init__(self, config, **decoder_kwargs):
super().__init__()
self.num_labels = config.num_labels
self.decoder = PerceiverBasicDecoder(
config,
output_num_channels=self.num_labels,
output_index_dims=1, # Predict a single logit array.
**decoder_kwargs,
)
@property
def num_query_channels(self) -> int:
return self.decoder.num_query_channels
def decoder_query(self, inputs, modality_sizes=None, inputs_without_pos=None, subsampled_points=None):
return self.decoder.decoder_query(
inputs, modality_sizes, inputs_without_pos, subsampled_points=subsampled_points
)
def forward(
self,
query: torch.Tensor,
z: torch.FloatTensor,
query_mask: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = False,
) -> PerceiverDecoderOutput:
decoder_outputs = self.decoder(query, z, output_attentions=output_attentions)
# B x 1 x num_classes -> B x num_classes
logits = decoder_outputs.logits[:, 0, :]
return PerceiverDecoderOutput(logits=logits, cross_attentions=decoder_outputs.cross_attentions)
class PerceiverOpticalFlowDecoder(PerceiverAbstractDecoder):
"""Cross-attention based optical flow decoder."""
def __init__(self, config, output_image_shape, output_num_channels=2, rescale_factor=100.0, **decoder_kwargs):
super().__init__()
self.output_image_shape = output_image_shape
self.output_num_channels = output_num_channels
self.rescale_factor = rescale_factor
self.decoder = PerceiverBasicDecoder(config, output_num_channels=output_num_channels, **decoder_kwargs)
@property
def num_query_channels(self) -> int:
return self.decoder.num_query_channels
def decoder_query(self, inputs, modality_sizes=None, inputs_without_pos=None, subsampled_points=None):
if subsampled_points is not None:
raise ValueError("FlowDecoder doesn't support subsampling yet.")
return inputs
def forward(
self,
query: torch.Tensor,
z: torch.FloatTensor,
query_mask: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = False,
) -> PerceiverDecoderOutput:
decoder_outputs = self.decoder(query, z, output_attentions=output_attentions)
preds = decoder_outputs.logits
# Output flow and rescale.
preds /= self.rescale_factor
preds = preds.reshape([preds.shape[0]] + list(self.output_image_shape) + [preds.shape[-1]])
return PerceiverDecoderOutput(logits=preds, cross_attentions=decoder_outputs.cross_attentions)
class PerceiverBasicVideoAutoencodingDecoder(PerceiverAbstractDecoder):
"""
Cross-attention based video-autoencoding decoder. Light-weight wrapper of [*PerceiverBasicDecoder*] with video
reshaping logic.
Args:
config ([*PerceiverConfig*]):
Model configuration.
output_shape (`List[int]`):
Shape of the output as (batch_size, num_frames, height, width), excluding the channel dimension.
position_encoding_type (`str`):
The type of position encoding to use. Can be either "trainable", "fourier", or "none".
"""
def __init__(
self, config: PerceiverConfig, output_shape: List[int], position_encoding_type: str, **decoder_kwargs
) -> None:
super().__init__()
if len(output_shape) != 4: # B, T, H, W
raise ValueError(f"Expected rank 4 output_shape, got {output_shape}.")
# Build the decoder components:
self.output_shape = output_shape
self.output_num_channels = decoder_kwargs["output_num_channels"]
self.decoder = PerceiverBasicDecoder(
config,
output_index_dims=self.output_shape[1:4], # T*H*W
position_encoding_type=position_encoding_type,
**decoder_kwargs,
)
@property
def num_query_channels(self) -> int:
return self.decoder.num_query_channels
def decoder_query(self, inputs, modality_sizes=None, inputs_without_pos=None, subsampled_points=None):
return self.decoder.decoder_query(
inputs,
modality_sizes=modality_sizes,
inputs_without_pos=inputs_without_pos,
subsampled_points=subsampled_points,
)
def forward(
self, query: torch.Tensor, z: torch.FloatTensor, query_mask: Optional[torch.FloatTensor] = None
) -> PerceiverDecoderOutput:
decoder_outputs = self.decoder(query, z)
logits = decoder_outputs.logits
logits = torch.reshape(logits, self.output_shape + [logits.shape[-1]])
return PerceiverDecoderOutput(logits=logits, cross_attentions=decoder_outputs.cross_attentions)
def restructure(modality_sizes: ModalitySizeType, inputs: torch.Tensor) -> Mapping[str, torch.Tensor]:
"""
Partitions a [B, N, C] tensor into tensors for each modality.
Args:
modality_sizes
dict specifying the size of the modality
inputs:
input tensor
Returns:
dict mapping name of modality to its associated tensor.
"""
outputs = {}
index = 0
# Apply a predictable ordering to the modalities
for modality in sorted(modality_sizes.keys()):
size = modality_sizes[modality]
inp = inputs[:, index : index + size]
index += size
outputs[modality] = inp
return outputs
class PerceiverMultimodalDecoder(PerceiverAbstractDecoder):
"""
Multimodal decoding by composing uni-modal decoders. The *modalities* argument of the constructor is a dictionary
mapping modality name to the decoder of that modality. That decoder will be used to construct queries for that
modality. Modality-specific queries are padded with trainable modality-specific parameters, after which they are
concatenated along the time dimension.
Next, there is a shared cross attention operation across all modalities.
Args:
config ([*PerceiverConfig*]):
Model configuration.
modalities (`Dict[str, PerceiverAbstractDecoder]`):
Dictionary mapping modality name to the decoder of that modality.
num_outputs (`int`):
The number of outputs of the decoder.
output_num_channels (`int`):
The number of channels in the output.
min_padding_size (`int`, *optional*, defaults to 2):
The minimum padding size for all modalities. The final output will have num_channels equal to the maximum
channels across all modalities plus min_padding_size.
subsampled_index_dims (`Dict[str, PerceiverAbstractDecoder]`, *optional*):
Dictionary mapping modality name to the subsampled index dimensions to use for the decoder query of that
modality.
"""
def __init__(
self,
config: PerceiverConfig,
modalities: Dict[str, PerceiverAbstractDecoder],
num_outputs: int,
output_num_channels: int,
min_padding_size: Optional[int] = 2,
subsampled_index_dims: Optional[Dict[str, PerceiverAbstractDecoder]] = None,
**decoder_kwargs,
) -> None:
super().__init__()
self.modalities = nn.ModuleDict(modalities)
self.subsampled_index_dims = subsampled_index_dims
self.min_padding_size = min_padding_size
self.output_num_channels = output_num_channels
self.num_outputs = num_outputs
self.decoder = PerceiverBasicDecoder(
config,
output_index_dims=(num_outputs,),
output_num_channels=output_num_channels,
position_encoding_type="none",
num_channels=self.num_query_channels,
**decoder_kwargs,
)
self.padding = nn.ParameterDict(
{
modality: nn.Parameter(torch.randn(1, self.num_query_channels - decoder.num_query_channels))
for modality, decoder in modalities.items()
}
)
@property
def num_query_channels(self) -> int:
max_channel_size = max(decoder.num_query_channels for _, decoder in self.modalities.items())
common_channel_size = max_channel_size + self.min_padding_size
return common_channel_size
def decoder_query(self, inputs, modality_sizes, inputs_without_pos=None, subsampled_points=None):
# Partition the flat inputs among the different modalities
inputs = restructure(modality_sizes, inputs)
# Obtain modality-specific decoders' queries
subsampled_points = subsampled_points or {}
decoder_queries = {}
for modality, decoder in self.modalities.items():
# Get input_without_pos for this modality if it exists.
input_without_pos = None
if inputs_without_pos is not None:
input_without_pos = inputs_without_pos.get(modality, None)
query = decoder.decoder_query(
inputs=inputs[modality],
modality_sizes=None,
inputs_without_pos=input_without_pos,
subsampled_points=subsampled_points.get(modality, None),
)
decoder_queries[modality] = query
# Pad all queries with trainable position encodings to make them have the same channels
def embed(modality, x):
x = torch.reshape(x, [x.shape[0], np.prod(x.shape[1:-1]), x.shape[-1]])
pos = self.padding[modality]
pos = torch.broadcast_to(pos, [x.shape[0], x.shape[1], self.num_query_channels - x.shape[2]])
return torch.cat([x, pos], dim=2)
# Apply a predictable ordering to the modalities
return torch.cat(
[embed(modality, decoder_queries[modality]) for modality in sorted(self.modalities.keys())], dim=1
)
def forward(
self,
query: torch.Tensor,
z: torch.FloatTensor,
query_mask: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = False,
) -> torch.Tensor:
# B x 1 x num_classes -> B x num_classes
decoder_outputs = self.decoder(query, z, output_attentions=output_attentions)
return decoder_outputs
# Below: IO pre- and post-processor classes for Perceiver.
def space_to_depth(frames: torch.Tensor, temporal_block_size: int = 1, spatial_block_size: int = 1) -> torch.Tensor:
"""
Space to depth transform. Rearranges blocks of spatial data, into depth.
This function assumes the channels to be first, but will place the channels last after transformation.
Based on https://discuss.pytorch.org/t/is-there-any-layer-like-tensorflows-space-to-depth-function/3487/15.
"""
if len(frames.shape) == 4:
batch_size, num_channels, height, width = frames.shape
# split up dimensions (height by spatial_block_size, width by spatial_block_size)
frames = frames.view(
batch_size,
num_channels,
height // spatial_block_size,
spatial_block_size,
width // spatial_block_size,
spatial_block_size,
)
# move blocks to last dimension: (batch_size, H//bs, W//bs, bs, bs, C)
frames = frames.permute(0, 2, 4, 3, 5, 1).contiguous()
# concatenate blocks along channel dimension: (batch_size, H//bs, W//bs, bs*bs*C)
frames = frames.view(
batch_size,
height // spatial_block_size,
width // spatial_block_size,
(spatial_block_size**2) * num_channels,
)
return frames
elif len(frames.shape) == 5:
batch_size, time, num_channels, height, width = frames.shape
# split up dimensions (time by temporal_block_size, height by spatial_block_size, width by spatial_block_size)
frames = frames.view(
batch_size,
time // temporal_block_size,
temporal_block_size,
num_channels,
height // spatial_block_size,
spatial_block_size,
width // spatial_block_size,
spatial_block_size,
)
# move blocks to last dimension: (batch_size, T//ts, H//bs, W//bs, ts, bs, bs, C)
frames = frames.permute(0, 1, 4, 6, 2, 5, 7, 3).contiguous()
# concatenate blocks along channel dimension: (batch_size, T//ts, H//bs, W//bs, ts*bs*bs*C)
frames = frames.view(
batch_size,
time // temporal_block_size,
height // spatial_block_size,
width // spatial_block_size,
temporal_block_size * (spatial_block_size**2) * num_channels,
)
return frames
else:
raise ValueError(
"Frames should be of rank 4 (batch, channels, height, width)"
" or rank 5 (batch, time, channels, height, width)"
)
class Conv2dSamePadding(nn.Conv2d):
"""
Conv2d layer with padding="same" support. Source:
https://gist.github.com/sumanmichael/4de9dee93f972d47c80c4ade8e149ea6
"""
def __init__(self, *args, **kwargs):
super(Conv2dSamePadding, self).__init__(*args, **kwargs)
self.zero_pad_2d = nn.ZeroPad2d(
reduce(__add__, [(k // 2 + (k - 2 * (k // 2)) - 1, k // 2) for k in self.kernel_size[::-1]])
)
def forward(self, input):
return self._conv_forward(self.zero_pad_2d(input), self.weight, self.bias)
class Conv2DDownsample(nn.Module):
"""Downsamples 4x by applying a 2D convolution and doing max pooling."""
def __init__(
self,
num_layers: int = 1,
in_channels: int = 3,
out_channels: int = 64,
use_batchnorm: bool = True,
):
"""
Constructs a Conv2DDownsample model.
Args:
in_channels (`int`, *optional*, defaults to 3):
The number of input channels.
out_channels (`int`, *optional*, defaults to 64):
The number of conv output channels.
use_batchnorm (`bool`, *optional*, defaults to `True`):
Whether to use batchnorm.
"""
super().__init__()
self.conv = Conv2dSamePadding(
in_channels=in_channels, out_channels=out_channels, kernel_size=7, stride=2, bias=False
)
self.batchnorm = nn.BatchNorm2d(num_features=out_channels) if use_batchnorm else nn.Identity()
self.relu = nn.ReLU()
self.max_pool = nn.MaxPool2d(kernel_size=3, stride=2)
def forward(self, inputs: torch.Tensor) -> torch.Tensor:
out = self.conv(inputs)
out = self.batchnorm(out)
out = self.relu(out)
out = self.max_pool(out)
return out
def generate_fourier_features(pos, num_bands, max_resolution=(224, 224), concat_pos=True, sine_only=False):
"""
Generate a Fourier frequency position encoding with linear spacing.
Args:
pos (`torch.LongTensor` of shape `(batch_size, sequence_length, dim)`):
The Tensor containing the position of n points in d dimensional space.
num_bands (`int`):
The number of frequency bands (K) to use.
max_resolution (`Tuple[int]`, *optional*, defaults to (224, 224)):
The maximum resolution (i.e. the number of pixels per dim). A tuple representing resolution for each dimension.
concat_pos (`bool`, *optional*, defaults to `True`):
Whether to concatenate the input position encoding to the Fourier features.
sine_only (`bool`, *optional*, defaults to `False`):
Whether to use a single phase (sin) or two (sin/cos) for each frequency band.
Returns:
`torch.FloatTensor` of shape `(batch_size, sequence_length, n_channels)`: The Fourier position embeddings. If
`concat_pos` is `True` and `sine_only` is `False`, output dimensions are ordered as: [dim_1, dim_2, ..., dim_d,
sin(pi*f_1*dim_1), ..., sin(pi*f_K*dim_1), ..., sin(pi*f_1*dim_d), ..., sin(pi*f_K*dim_d), cos(pi*f_1*dim_1),
..., cos(pi*f_K*dim_1), ..., cos(pi*f_1*dim_d), ..., cos(pi*f_K*dim_d)], where dim_i is pos[:, i] and f_k is the
kth frequency band.
"""
batch_size = pos.shape[0]
min_freq = 1.0
# Nyquist frequency at the target resolution:
freq_bands = torch.stack(
[torch.linspace(start=min_freq, end=res / 2, steps=num_bands) for res in max_resolution], dim=0
)
# Get frequency bands for each spatial dimension.
# Output is size [n, d * num_bands]
per_pos_features = pos[0, :, :][:, :, None] * freq_bands[None, :, :]
per_pos_features = torch.reshape(per_pos_features, [-1, np.prod(per_pos_features.shape[1:])])
if sine_only:
# Output is size [n, d * num_bands]
per_pos_features = torch.sin(np.pi * (per_pos_features))
else:
# Output is size [n, 2 * d * num_bands]
per_pos_features = torch.cat(
[torch.sin(np.pi * per_pos_features), torch.cos(np.pi * per_pos_features)], dim=-1
)
# Concatenate the raw input positions.
if concat_pos:
# Adds d bands to the encoding.
per_pos_features = torch.cat([pos, per_pos_features.expand(batch_size, -1, -1)], dim=-1)
return per_pos_features
def build_linear_positions(index_dims, output_range=(-1.0, 1.0)):
"""
Generate an array of position indices for an N-D input array.
Args:
index_dims (`List[int]`):
The shape of the index dimensions of the input array.
output_range (`Tuple[float]`, *optional*, defaults to `(-1.0, 1.0)`):
The min and max values taken by each input index dimension.
Returns:
`torch.FloatTensor` of shape `(index_dims[0], index_dims[1], .., index_dims[-1], N)`.
"""
def _linspace(n_xels_per_dim):
return torch.linspace(start=output_range[0], end=output_range[1], steps=n_xels_per_dim, dtype=torch.float32)
dim_ranges = [_linspace(n_xels_per_dim) for n_xels_per_dim in index_dims]
array_index_grid = meshgrid(*dim_ranges, indexing="ij")
return torch.stack(array_index_grid, dim=-1)
class PerceiverAbstractPositionEncoding(nn.Module, metaclass=abc.ABCMeta):
"""Perceiver abstract position encoding."""
@property
@abc.abstractmethod
def num_dimensions(self) -> int:
raise NotImplementedError
@abc.abstractmethod
def output_size(self, *args, **kwargs) -> int:
raise NotImplementedError
@abc.abstractmethod
def forward(self, batch_size, pos):
raise NotImplementedError
class PerceiverTrainablePositionEncoding(PerceiverAbstractPositionEncoding):
"""Trainable position encoding."""
def __init__(self, index_dims, num_channels=128):
super().__init__()
self._num_channels = num_channels
self._index_dims = index_dims
index_dim = np.prod(index_dims)
self.position_embeddings = nn.Parameter(torch.randn(index_dim, num_channels))
@property
def num_dimensions(self) -> int:
if isinstance(self._index_dims, int):
return 1
return len(self._index_dims)
def output_size(self, *args, **kwargs) -> int:
return self._num_channels
def forward(self, batch_size: int) -> torch.Tensor:
position_embeddings = self.position_embeddings
if batch_size is not None:
position_embeddings = position_embeddings.expand(batch_size, -1, -1)
return position_embeddings
def _check_or_build_spatial_positions(pos, index_dims, batch_size):
"""
Checks or builds spatial position features (x, y, ...).
Args:
pos (`torch.FloatTensor`):
None, or an array of position features. If None, position features are built. Otherwise, their size is checked.
index_dims (`List[int]`):
An iterable giving the spatial/index size of the data to be featurized.
batch_size (`int`):
The batch size of the data to be featurized.
Returns:
`torch.FloatTensor` of shape `(batch_size, prod(index_dims))` an array of position features.
"""
if pos is None:
pos = build_linear_positions(index_dims)
# equivalent to `torch.broadcast_to(pos[None], (batch_size,) + pos.shape)`
# but `torch.broadcast_to` cannot be converted to ONNX
pos = pos[None].expand((batch_size,) + pos.shape)
pos = torch.reshape(pos, [batch_size, np.prod(index_dims), -1])
else:
# Just a warning label: you probably don't want your spatial features to
# have a different spatial layout than your pos coordinate system.
# But feel free to override if you think it'll work!
if pos.shape[-1] != len(index_dims):
raise ValueError("Spatial features have the wrong number of dimensions.")
return pos
class PerceiverFourierPositionEncoding(PerceiverAbstractPositionEncoding):
"""Fourier (Sinusoidal) position encoding."""
def __init__(self, num_bands, max_resolution, concat_pos=True, sine_only=False):
super().__init__()
self.num_bands = num_bands
self.max_resolution = max_resolution
self.concat_pos = concat_pos
self.sine_only = sine_only
@property
def num_dimensions(self) -> int:
return len(self.max_resolution)
def output_size(self):
"""Returns size of positional encodings last dimension."""
num_dims = len(self.max_resolution)
encoding_size = self.num_bands * num_dims
if not self.sine_only:
encoding_size *= 2
if self.concat_pos:
encoding_size += self.num_dimensions
return encoding_size
def forward(
self,
index_dims: List[int],
batch_size: int,
device: torch.device,
dtype: torch.dtype,
pos: torch.FloatTensor = None,
) -> torch.FloatTensor:
pos = _check_or_build_spatial_positions(pos, index_dims, batch_size)
fourier_pos_enc = generate_fourier_features(
pos,
num_bands=self.num_bands,
max_resolution=self.max_resolution,
concat_pos=self.concat_pos,
sine_only=self.sine_only,
).to(device=device, dtype=dtype)
return fourier_pos_enc
class AbstractPreprocessor(nn.Module):
@property
def num_channels(self) -> int:
"""Returns size of preprocessor output."""
raise NotImplementedError()
class PerceiverTextPreprocessor(AbstractPreprocessor):
"""
Text preprocessing for Perceiver Encoder. Can be used to embed `inputs` and add positional encodings.
The dimensionality of the embeddings is determined by the `d_model` attribute of the configuration.
Args:
config ([`PerceiverConfig`]):
Model configuration.
"""
def __init__(self, config: PerceiverConfig) -> None:
super().__init__()
self.config = config
self.embeddings = nn.Embedding(num_embeddings=config.vocab_size, embedding_dim=config.d_model)
self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.d_model)
@property
def num_channels(self) -> int:
return self.config.d_model
def forward(self, inputs: torch.LongTensor, pos: Optional[torch.Tensor] = None, network_input_is_1d: bool = True):
embeddings_without_pos = self.embeddings(inputs)
seq_length = inputs.shape[1]
position_ids = torch.arange(0, seq_length, device=inputs.device)
embeddings = embeddings_without_pos + self.position_embeddings(position_ids)
return embeddings, None, embeddings_without_pos
class PerceiverEmbeddingDecoder(nn.Module):
"""
Module to decode embeddings (for masked language modeling).
Args:
config ([`PerceiverConfig`]):
Model configuration.
"""
def __init__(self, config: PerceiverConfig) -> None:
super().__init__()
self.config = config
self.vocab_size = config.vocab_size
self.bias = nn.Parameter(torch.zeros(self.vocab_size))
def forward(self, hidden_states: torch.Tensor, embedding_layer: torch.Tensor) -> torch.Tensor:
batch_size, seq_len, d_model = hidden_states.shape
# Flatten batch dim
output = torch.matmul(hidden_states.reshape([-1, d_model]), embedding_layer.weight.transpose(0, 1))
output = output + self.bias
return output.reshape([batch_size, seq_len, self.vocab_size])
class PerceiverMultimodalPostprocessor(nn.Module):
"""
Multimodal postprocessing for Perceiver. Can be used to combine modality-specific postprocessors into a single
postprocessor.
Args:
modalities (`Mapping[str, PostprocessorType]`):
Dictionary mapping modality name to postprocessor class for that modality.
input_is_dict (`bool`, *optional*, defaults to `False`):
If True, input is assumed to be dictionary structured, and outputs keep the same dictionary shape. If
False, input is a tensor which is sliced up during postprocessing by *modality_sizes*.
"""
def __init__(self, modalities: Mapping[str, PostprocessorType], input_is_dict: bool = False):
super().__init__()
self.modalities = nn.ModuleDict(modalities)
self.input_is_dict = input_is_dict
def forward(
self, inputs: torch.Tensor, pos: Optional[torch.Tensor] = None, modality_sizes=None
) -> Mapping[str, torch.Tensor]:
if not self.input_is_dict:
# Slice up modalities by their sizes.
if modality_sizes is None:
raise ValueError("Modality sizes should be specified if input is not a dictionary.")
inputs = restructure(modality_sizes=modality_sizes, inputs=inputs)
outputs = {
modality: postprocessor(inputs[modality], pos=pos, modality_sizes=None)
for modality, postprocessor in self.modalities.items()
}
return outputs
class PerceiverClassificationPostprocessor(nn.Module):
"""
Classification postprocessing for Perceiver. Can be used to convert the decoder output to classification logits.
Args:
config ([*PerceiverConfig*]):
Model configuration.
in_channels (`int`):
Number of channels in the input.
"""
def __init__(self, config: PerceiverConfig, in_channels: int) -> None:
super().__init__()
self.classifier = nn.Linear(in_channels, config.num_labels)
def forward(self, inputs, pos: Optional[torch.Tensor] = None, modality_sizes=None) -> torch.Tensor:
logits = self.classifier(inputs)
return logits[:, 0, :]
class PerceiverAudioPostprocessor(nn.Module):
"""
Audio postprocessing for Perceiver. Can be used to convert the decoder output to audio features.
Args:
config ([*PerceiverConfig*]):
Model configuration.
in_channels (`int`):
Number of channels in the input.
postproc_type (`str`, *optional*, defaults to `"patches"`):
Postprocessor type to use. Currently, only "patches" is supported.
"""
def __init__(self, config: PerceiverConfig, in_channels: int, postproc_type: str = "patches") -> None:
super().__init__()
if postproc_type not in ("patches",): # to be supported: 'conv', 'patches', 'pixels'
raise ValueError("Invalid postproc_type!")
# Architecture parameters:
self.classifier = nn.Linear(in_channels, config.samples_per_patch)
def forward(self, inputs: torch.Tensor, pos: Optional[torch.Tensor] = None, modality_sizes=None) -> torch.Tensor:
logits = self.classifier(inputs)
return torch.reshape(logits, [inputs.shape[0], -1])
class PerceiverProjectionPostprocessor(nn.Module):
"""
Projection postprocessing for Perceiver. Can be used to project the channels of the decoder output to a lower
dimension.
Args:
in_channels (`int`):
Number of channels in the input.
out_channels (`int`):
Number of channels in the output.
"""
def __init__(self, in_channels: int, out_channels: int) -> None:
super().__init__()
self.classifier = nn.Linear(in_channels, out_channels)
def forward(self, inputs: torch.Tensor, pos: Optional[torch.Tensor] = None, modality_sizes=None) -> torch.Tensor:
logits = self.classifier(inputs)
return logits
class PerceiverImagePreprocessor(AbstractPreprocessor):
"""
Image preprocessing for Perceiver Encoder.
Note: the *out_channels* argument refers to the output channels of a convolutional layer, if *prep_type* is set to
"conv1x1" or "conv". If one adds absolute position embeddings, one must make sure the *num_channels* of the
position encoding kwargs are set equal to the *out_channels*.
Args:
config ([*PerceiverConfig*]):
Model configuration.
prep_type (`str`, *optional*, defaults to `"conv"`):
Preprocessing type. Can be "conv1x1", "conv", "patches", "pixels".
spatial_downsample (`int`, *optional*, defaults to 4):
Spatial downsampling factor.
temporal_downsample (`int`, *optional*, defaults to 1):
Temporal downsampling factor (only relevant in case a time dimension is present).
position_encoding_type (`str`, *optional*, defaults to `"fourier"`):
Position encoding type. Can be "fourier" or "trainable".
in_channels (`int`, *optional*, defaults to 3):
Number of channels in the input.
out_channels (`int`, *optional*, defaults to 64):
Number of channels in the output.
conv_after_patching (`bool`, *optional*, defaults to `False`):
Whether to apply a convolutional layer after patching.
conv_after_patching_in_channels (`int`, *optional*, defaults to 54):
Number of channels in the input of the convolutional layer after patching.
conv2d_use_batchnorm (`bool`, *optional*, defaults to `True`):
Whether to use batch normalization in the convolutional layer.
concat_or_add_pos (`str`, *optional*, defaults to `"concat"`):
How to concatenate the position encoding to the input. Can be "concat" or "add".
project_pos_dim (`int`, *optional*, defaults to -1):
Dimension of the position encoding to project to. If -1, no projection is applied.
**position_encoding_kwargs (`Dict`, *optional*):
Keyword arguments for the position encoding.
"""
def __init__(
self,
config,
prep_type="conv",
spatial_downsample: int = 4,
temporal_downsample: int = 1,
position_encoding_type: str = "fourier",
in_channels: int = 3,
out_channels: int = 64,
conv_after_patching: bool = False,
conv_after_patching_in_channels: int = 54, # only relevant when conv_after_patching = True
conv2d_use_batchnorm: bool = True,
concat_or_add_pos: str = "concat",
project_pos_dim: int = -1,
**position_encoding_kwargs,
):
super().__init__()
self.config = config
if prep_type not in ("conv", "patches", "pixels", "conv1x1"):
raise ValueError(f"Prep_type {prep_type} is invalid")
if concat_or_add_pos not in ["concat", "add"]:
raise ValueError(f"Invalid value {concat_or_add_pos} for concat_or_add_pos.")
self.in_channels = in_channels
self.prep_type = prep_type
self.spatial_downsample = spatial_downsample
self.temporal_downsample = temporal_downsample
self.position_encoding_type = position_encoding_type
self.concat_or_add_pos = concat_or_add_pos
self.conv_after_patching = conv_after_patching
self.out_channels = out_channels
if self.prep_type == "conv":
# Downsampling with conv is currently restricted
convnet_num_layers = math.log(spatial_downsample, 4)
convnet_num_layers_is_int = convnet_num_layers == np.round(convnet_num_layers)
if not convnet_num_layers_is_int or temporal_downsample != 1:
raise ValueError(
"Only powers of 4 expected for spatial and 1 expected for temporal downsampling with conv."
)
self.convnet = Conv2DDownsample(
in_channels=in_channels,
num_layers=int(convnet_num_layers),
out_channels=out_channels,
use_batchnorm=conv2d_use_batchnorm,
)
elif self.prep_type == "conv1x1":
if temporal_downsample != 1:
raise ValueError("Conv1x1 does not downsample in time.")
self.convnet_1x1 = nn.Conv2d(
in_channels=in_channels,
out_channels=out_channels,
kernel_size=(1, 1),
# spatial_downsample is unconstrained for 1x1 convolutions.
stride=(spatial_downsample, spatial_downsample),
)
# Position embeddings
self.project_pos_dim = project_pos_dim
self.position_embeddings, self.positions_projection = build_position_encoding(
position_encoding_type=position_encoding_type,
out_channels=out_channels,
project_pos_dim=project_pos_dim,
**position_encoding_kwargs,
)
# Optional convolutional layer after patches.
self.conv_after_patches = (
nn.Linear(conv_after_patching_in_channels, self.out_channels) if conv_after_patching else nn.Identity()
)
@property
def num_channels(self) -> int:
# Let's assume that the number of resolutions (in the context of image preprocessing)
# of the input data is 2 or 3 depending on whether we are processing image or video respectively.
# In this case, for convenience, we will declare is_temporal variable,
# which will show whether the data has a temporal dimension or not.
is_temporal = self.position_embeddings.num_dimensions > 2
# position embedding
if self.project_pos_dim > 0:
pos_dim = self.project_pos_dim
else:
pos_dim = self.position_embeddings.output_size()
if self.concat_or_add_pos == "add":
return pos_dim
# inputs
if self.conv_after_patching or self.prep_type in ("conv1x1", "conv"):
inp_dim = self.out_channels
elif self.prep_type == "pixels":
inp_dim = self.in_channels
if not is_temporal:
inp_dim = math.ceil(inp_dim / self.spatial_downsample)
elif self.prep_type == "patches":
if self.conv_after_patching:
inp_dim = self.out_channels
else:
inp_dim = self.in_channels * self.spatial_downsample**2
if is_temporal:
inp_dim *= self.temporal_downsample
return inp_dim + pos_dim
def _build_network_inputs(self, inputs: torch.Tensor, network_input_is_1d: bool = True):
"""
Construct the final input, including position encoding.
This method expects the inputs to always have channels as last dimension.
"""
batch_size = inputs.shape[0]
index_dims = inputs.shape[1:-1]
indices = np.prod(index_dims)
# Flatten input features to a 1D index dimension if necessary.
if len(inputs.shape) > 3 and network_input_is_1d:
inputs = torch.reshape(inputs, [batch_size, indices, -1])
# Construct the position encoding.
if self.position_encoding_type == "trainable":
pos_enc = self.position_embeddings(batch_size)
elif self.position_encoding_type == "fourier":
pos_enc = self.position_embeddings(index_dims, batch_size, device=inputs.device, dtype=inputs.dtype)
# Optionally project them to a target dimension.
pos_enc = self.positions_projection(pos_enc)
if not network_input_is_1d:
# Reshape pos to match the input feature shape
# if the network takes non-1D inputs
sh = inputs.shape
pos_enc = torch.reshape(pos_enc, list(sh)[:-1] + [-1])
if self.concat_or_add_pos == "concat":
inputs_with_pos = torch.cat([inputs, pos_enc], dim=-1)
elif self.concat_or_add_pos == "add":
inputs_with_pos = inputs + pos_enc
return inputs_with_pos, inputs
def forward(self, inputs: torch.Tensor, pos: Optional[torch.Tensor] = None, network_input_is_1d: bool = True):
if self.prep_type == "conv":
# Convnet image featurization.
# Downsamples spatially by a factor of 4
inputs = self.convnet(inputs)
elif self.prep_type == "conv1x1":
# map inputs to self.out_channels
inputs = self.convnet_1x1(inputs)
elif self.prep_type == "pixels":
# if requested, downsamples in the crudest way
if inputs.ndim == 4:
inputs = inputs[:: self.spatial_downsample, :: self.spatial_downsample]
elif inputs.ndim == 5:
inputs = inputs[
:, :: self.temporal_downsample, :, :: self.spatial_downsample, :: self.spatial_downsample
]
else:
raise ValueError("Unsupported data format for pixels.")
elif self.prep_type == "patches":
# Space2depth featurization.
# Video: B x T x C x H x W
inputs = space_to_depth(
inputs, temporal_block_size=self.temporal_downsample, spatial_block_size=self.spatial_downsample
)
if inputs.ndim == 5 and inputs.shape[1] == 1:
# for flow
inputs = inputs.squeeze(dim=1)
# Optionally apply conv layer.
inputs = self.conv_after_patches(inputs)
if self.prep_type != "patches":
# move channels to last dimension, as the _build_network_inputs method below expects this
if inputs.ndim == 4:
inputs = inputs.permute(0, 2, 3, 1)
elif inputs.ndim == 5:
inputs = inputs.permute(0, 1, 3, 4, 2)
else:
raise ValueError("Unsupported data format for conv1x1.")
inputs, inputs_without_pos = self._build_network_inputs(inputs, network_input_is_1d)
modality_sizes = None # Size for each modality, only needed for multimodal
return inputs, modality_sizes, inputs_without_pos
class PerceiverOneHotPreprocessor(AbstractPreprocessor):
"""
One-hot preprocessor for Perceiver Encoder. Can be used to add a dummy index dimension to the input.
Args:
config ([`PerceiverConfig`]):
Model configuration.
"""
def __init__(self, config: PerceiverConfig) -> None:
super().__init__()
self.config: PerceiverConfig = config
@property
def num_channels(self) -> int:
return self.config.num_labels
def forward(self, inputs: torch.Tensor, pos: Optional[torch.Tensor] = None, network_input_is_1d: bool = True):
# Add a dummy index dimension.
inputs = inputs[:, None, :]
# No position encodings, so the 1st (input) and 3rd (inputs_without_pos)
# outputs are identical.
return inputs, None, inputs
class PerceiverAudioPreprocessor(AbstractPreprocessor):
"""
Audio preprocessing for Perceiver Encoder.
Args:
config ([*PerceiverConfig*]):
Model configuration.
prep_type (`str`, *optional*, defaults to `"patches"`):
Preprocessor type to use. Only "patches" is supported.
samples_per_patch (`int`, *optional*, defaults to 96):
Number of samples per patch.
position_encoding_type (`str`, *optional*, defaults to `"fourier"`):
Type of position encoding to use. Can be "trainable" or "fourier".
concat_or_add_pos (`str`, *optional*, defaults to `"concat"`):
How to concatenate the position encoding to the input. Can be "concat" or "add".
out_channels (`int`, *optional*, defaults to 64):
Number of channels in the output.
project_pos_dim (`int`, *optional*, defaults to -1):
Dimension of the position encoding to project to. If -1, no projection is applied.
**position_encoding_kwargs (`Dict`, *optional*):
Keyword arguments for the position encoding.
"""
def __init__(
self,
config,
prep_type: str = "patches",
samples_per_patch: int = 96,
position_encoding_type: str = "fourier",
concat_or_add_pos: str = "concat",
out_channels=64,
project_pos_dim=-1,
**position_encoding_kwargs,
):
super().__init__()
self.config = config
if prep_type not in ("patches",):
raise ValueError(f"Prep_type {prep_type} is invalid, can only be 'patches'.")
if concat_or_add_pos not in ["concat", "add"]:
raise ValueError(f"Concat_or_pos {concat_or_add_pos} is invalid, can only be 'concat' or 'add'.")
self.samples_per_patch = samples_per_patch
self.position_encoding_type = position_encoding_type
self.concat_or_add_pos = concat_or_add_pos
self.project_pos_dim = project_pos_dim
# Position embeddings
self.position_embeddings, self.positions_projection = build_position_encoding(
position_encoding_type=position_encoding_type,
out_channels=out_channels,
project_pos_dim=project_pos_dim,
**position_encoding_kwargs,
)
@property
def num_channels(self) -> int:
# position embedding
if self.project_pos_dim > 0:
pos_dim = self.project_pos_dim
else:
pos_dim = self.position_embeddings.output_size()
if self.concat_or_add_pos == "add":
return pos_dim
return self.samples_per_patch + pos_dim
def _build_network_inputs(self, inputs):
"""Construct the final input, including position encoding."""
batch_size = inputs.shape[0]
index_dims = inputs.shape[1:-1]
# Construct the position encoding.
if self.position_encoding_type == "trainable":
pos_enc = self.position_embeddings(batch_size)
elif self.position_encoding_type == "fourier":
pos_enc = self.position_embeddings(index_dims, batch_size, device=inputs.device, dtype=inputs.dtype)
# Optionally project them to a target dimension.
pos_enc = self.positions_projection(pos_enc)
if self.concat_or_add_pos == "concat":
inputs_with_pos = torch.cat([inputs, pos_enc], dim=-1)
elif self.concat_or_add_pos == "add":
inputs_with_pos = inputs + pos_enc
return inputs_with_pos, inputs
def forward(self, inputs: torch.Tensor, pos: Optional[torch.Tensor] = None, network_input_is_1d: bool = True):
inputs = torch.reshape(inputs, [inputs.shape[0], -1, self.samples_per_patch])
inputs, inputs_without_pos = self._build_network_inputs(inputs)
modality_sizes = None # Size for each modality, only needed for multimodal
return inputs, modality_sizes, inputs_without_pos
class PerceiverMultimodalPreprocessor(AbstractPreprocessor):
"""
Multimodal preprocessing for Perceiver Encoder.
Inputs for each modality are preprocessed, then padded with trainable position embeddings to have the same number
of channels.
Args:
modalities (`Mapping[str, PreprocessorType]`):
Dict mapping modality name to preprocessor.
mask_probs (`Dict[str, float]`):
Dict mapping modality name to masking probability of that modality.
min_padding_size (`int`, *optional*, defaults to 2):
The minimum padding size for all modalities. The final output will have num_channels equal to the maximum
channels across all modalities plus min_padding_size.
"""
def __init__(
self,
modalities: Mapping[str, PreprocessorType],
mask_probs: Optional[Mapping[str, float]] = None,
min_padding_size: int = 2,
):
super().__init__()
self.modalities = nn.ModuleDict(modalities)
self.min_padding_size = min_padding_size
self.mask_probs = mask_probs if mask_probs is not None else {}
self.padding = nn.ParameterDict(
{
modality: nn.Parameter(torch.randn(1, self.num_channels - preprocessor.num_channels))
for modality, preprocessor in modalities.items()
}
)
self.mask = nn.ParameterDict(
{modality: nn.Parameter(torch.randn(1, self.num_channels)) for modality, _ in self.mask_probs.items()}
)
@property
def num_channels(self) -> int:
max_channel_size = max(processor.num_channels for _, processor in self.modalities.items())
common_channel_size = max_channel_size + self.min_padding_size
return common_channel_size
def forward(
self, inputs: Mapping[str, torch.Tensor], pos: Optional[torch.Tensor] = None, network_input_is_1d: bool = True
) -> PreprocessorOutputType:
padded = {}
modality_sizes = {}
inputs_without_pos = {}
for modality, preprocessor in self.modalities.items():
# preprocess each modality using the respective preprocessor.
output, _, inputs_without_pos[modality] = preprocessor(
inputs[modality], pos=pos, network_input_is_1d=network_input_is_1d
)
# pad to the same common_channel_size.
batch_size, num_samples, num_channels = output.shape
pos_enc = self.padding[modality].expand(batch_size, -1, -1)
padding = torch.broadcast_to(
pos_enc,
[batch_size, num_samples, self.num_channels - num_channels],
)
output_padded = torch.cat([output, padding], dim=2)
# mask if required
if modality in self.mask_probs:
mask_token = self.mask[modality].expand(batch_size, -1, -1)
mask_prob = self.mask_probs[modality]
mask = torch.bernoulli(torch.full([batch_size, num_samples], mask_prob))
mask = torch.unsqueeze(mask, dim=2).to(mask_token.device)
output_padded = (1 - mask) * output_padded + mask * mask_token
padded[modality] = output_padded
modality_sizes[modality] = output_padded.shape[1]
# Apply a predictable ordering to the modalities
padded_ls = [padded[k] for k in sorted(padded.keys())]
# Finally, concatenate along the time dimension
final_inputs = torch.cat(padded_ls, dim=1)
return final_inputs, modality_sizes, inputs_without_pos
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/perceiver/configuration_perceiver.py | # coding=utf-8
# Copyright Deepmind and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Perceiver model configuration"""
from collections import OrderedDict
from typing import Any, Mapping, Optional, Union
from ...configuration_utils import PretrainedConfig
from ...feature_extraction_utils import FeatureExtractionMixin
from ...onnx import OnnxConfig
from ...onnx.utils import compute_effective_axis_dimension
from ...tokenization_utils_base import PreTrainedTokenizerBase
from ...utils import TensorType, logging
logger = logging.get_logger(__name__)
PERCEIVER_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"deepmind/language-perceiver": "https://huggingface.co/deepmind/language-perceiver/resolve/main/config.json",
# See all Perceiver models at https://huggingface.co/models?filter=perceiver
}
class PerceiverConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`PerceiverModel`]. It is used to instantiate an
Perceiver model according to the specified arguments, defining the model architecture. Instantiating a
configuration with the defaults will yield a similar configuration to that of the Perceiver
[deepmind/language-perceiver](https://huggingface.co/deepmind/language-perceiver) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
num_latents (`int`, *optional*, defaults to 256):
The number of latents.
d_latents (`int`, *optional*, defaults to 1280):
Dimension of the latent embeddings.
d_model (`int`, *optional*, defaults to 768):
Dimension of the inputs. Should only be provided in case [*PerceiverTextPreprocessor*] is used or no
preprocessor is provided.
num_blocks (`int`, *optional*, defaults to 1):
Number of blocks in the Transformer encoder.
num_self_attends_per_block (`int`, *optional*, defaults to 26):
The number of self-attention layers per block.
num_self_attention_heads (`int`, *optional*, defaults to 8):
Number of attention heads for each self-attention layer in the Transformer encoder.
num_cross_attention_heads (`int`, *optional*, defaults to 8):
Number of attention heads for each cross-attention layer in the Transformer encoder.
qk_channels (`int`, *optional*):
Dimension to project the queries + keys before applying attention in the cross-attention and self-attention
layers of the encoder. Will default to preserving the dimension of the queries if not specified.
v_channels (`int`, *optional*):
Dimension to project the values before applying attention in the cross-attention and self-attention layers
of the encoder. Will default to preserving the dimension of the queries if not specified.
cross_attention_shape_for_attention (`str`, *optional*, defaults to `"kv"`):
Dimension to use when downsampling the queries and keys in the cross-attention layer of the encoder.
self_attention_widening_factor (`int`, *optional*, defaults to 1):
Dimension of the feed-forward layer in the cross-attention layer of the Transformer encoder.
cross_attention_widening_factor (`int`, *optional*, defaults to 1):
Dimension of the feed-forward layer in the self-attention layers of the Transformer encoder.
hidden_act (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"selu"` and `"gelu_new"` are supported.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention probabilities.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
use_query_residual (`float`, *optional*, defaults to `True`):
Whether to add a query residual in the cross-attention layer of the encoder.
vocab_size (`int`, *optional*, defaults to 262):
Vocabulary size for the masked language modeling model.
max_position_embeddings (`int`, *optional*, defaults to 2048):
The maximum sequence length that the masked language modeling model might ever be used with. Typically set
this to something large just in case (e.g., 512 or 1024 or 2048).
image_size (`int`, *optional*, defaults to 56):
Size of the images after preprocessing, for [`PerceiverForImageClassificationLearned`].
train_size (`List[int]`, *optional*, defaults to `[368, 496]`):
Training size of the images for the optical flow model.
num_frames (`int`, *optional*, defaults to 16):
Number of video frames used for the multimodal autoencoding model.
audio_samples_per_frame (`int`, *optional*, defaults to 1920):
Number of audio samples per frame for the multimodal autoencoding model.
samples_per_patch (`int`, *optional*, defaults to 16):
Number of audio samples per patch when preprocessing the audio for the multimodal autoencoding model.
output_shape (`List[int]`, *optional*, defaults to `[1, 16, 224, 224]`):
Shape of the output (batch_size, num_frames, height, width) for the video decoder queries of the multimodal
autoencoding model. This excludes the channel dimension.
output_num_channels (`int`, *optional*, defaults to 512):
Number of output channels for each modalitiy decoder.
Example:
```python
>>> from transformers import PerceiverModel, PerceiverConfig
>>> # Initializing a Perceiver deepmind/language-perceiver style configuration
>>> configuration = PerceiverConfig()
>>> # Initializing a model from the deepmind/language-perceiver style configuration
>>> model = PerceiverModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "perceiver"
def __init__(
self,
num_latents=256,
d_latents=1280,
d_model=768,
num_blocks=1,
num_self_attends_per_block=26,
num_self_attention_heads=8,
num_cross_attention_heads=8,
qk_channels=None,
v_channels=None,
cross_attention_shape_for_attention="kv",
self_attention_widening_factor=1,
cross_attention_widening_factor=1,
hidden_act="gelu",
attention_probs_dropout_prob=0.1,
initializer_range=0.02,
layer_norm_eps=1e-12,
use_query_residual=True,
vocab_size=262,
max_position_embeddings=2048,
image_size=56,
train_size=[368, 496],
num_frames=16,
audio_samples_per_frame=1920,
samples_per_patch=16,
output_shape=[1, 16, 224, 224],
output_num_channels=512,
_label_trainable_num_channels=1024,
**kwargs,
):
super().__init__(**kwargs)
self.num_latents = num_latents
self.d_latents = d_latents
self.d_model = d_model
self.num_blocks = num_blocks
self.num_self_attends_per_block = num_self_attends_per_block
self.num_self_attention_heads = num_self_attention_heads
self.num_cross_attention_heads = num_cross_attention_heads
self.qk_channels = qk_channels
self.v_channels = v_channels
self.cross_attention_shape_for_attention = cross_attention_shape_for_attention
self.self_attention_widening_factor = self_attention_widening_factor
self.cross_attention_widening_factor = cross_attention_widening_factor
self.hidden_act = hidden_act
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.initializer_range = initializer_range
self.layer_norm_eps = layer_norm_eps
self.use_query_residual = use_query_residual
# masked language modeling attributes
self.vocab_size = vocab_size
self.max_position_embeddings = max_position_embeddings
# image classification attributes
self.image_size = image_size
# flow attributes
self.train_size = train_size
# multimodal autoencoding attributes
self.num_frames = num_frames
self.audio_samples_per_frame = audio_samples_per_frame
self.samples_per_patch = samples_per_patch
self.output_shape = output_shape
self.output_num_channels = output_num_channels
self._label_trainable_num_channels = _label_trainable_num_channels
class PerceiverOnnxConfig(OnnxConfig):
@property
def inputs(self) -> Mapping[str, Mapping[int, str]]:
if self.task == "multiple-choice":
dynamic_axis = {0: "batch", 1: "choice", 2: "sequence"}
else:
dynamic_axis = {0: "batch", 1: "sequence"}
return OrderedDict(
[
("inputs", dynamic_axis),
("attention_mask", dynamic_axis),
]
)
@property
def atol_for_validation(self) -> float:
return 1e-4
def generate_dummy_inputs(
self,
preprocessor: Union["PreTrainedTokenizerBase", "FeatureExtractionMixin"],
batch_size: int = -1,
seq_length: int = -1,
num_choices: int = -1,
is_pair: bool = False,
framework: Optional[TensorType] = None,
num_channels: int = 3,
image_width: int = 40,
image_height: int = 40,
) -> Mapping[str, Any]:
# copied from `transformers.onnx.config.OnnxConfig` and slightly altered/simplified
if isinstance(preprocessor, PreTrainedTokenizerBase):
# If dynamic axis (-1) we forward with a fixed dimension of 2 samples to avoid optimizations made by ONNX
batch_size = compute_effective_axis_dimension(
batch_size, fixed_dimension=OnnxConfig.default_fixed_batch, num_token_to_add=0
)
# If dynamic axis (-1) we forward with a fixed dimension of 8 tokens to avoid optimizations made by ONNX
token_to_add = preprocessor.num_special_tokens_to_add(is_pair)
seq_length = compute_effective_axis_dimension(
seq_length, fixed_dimension=OnnxConfig.default_fixed_sequence, num_token_to_add=token_to_add
)
# Generate dummy inputs according to compute batch and sequence
dummy_input = [" ".join(["a"]) * seq_length] * batch_size
inputs = dict(preprocessor(dummy_input, return_tensors=framework))
inputs["inputs"] = inputs.pop("input_ids")
return inputs
elif isinstance(preprocessor, FeatureExtractionMixin) and preprocessor.model_input_names[0] == "pixel_values":
# If dynamic axis (-1) we forward with a fixed dimension of 2 samples to avoid optimizations made by ONNX
batch_size = compute_effective_axis_dimension(batch_size, fixed_dimension=OnnxConfig.default_fixed_batch)
dummy_input = self._generate_dummy_images(batch_size, num_channels, image_height, image_width)
inputs = dict(preprocessor(images=dummy_input, return_tensors=framework))
inputs["inputs"] = inputs.pop("pixel_values")
return inputs
else:
raise ValueError(
"Unable to generate dummy inputs for the model. Please provide a tokenizer or a preprocessor."
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/mgp_str/__init__.py | # flake8: noqa
# There's no way to ignore "F401 '...' imported but unused" warnings in this
# module, but to preserve other warnings. So, don't check this module at all.
# Copyright 2023 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available
_import_structure = {
"configuration_mgp_str": ["MGP_STR_PRETRAINED_CONFIG_ARCHIVE_MAP", "MgpstrConfig"],
"processing_mgp_str": ["MgpstrProcessor"],
"tokenization_mgp_str": ["MgpstrTokenizer"],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_mgp_str"] = [
"MGP_STR_PRETRAINED_MODEL_ARCHIVE_LIST",
"MgpstrModel",
"MgpstrPreTrainedModel",
"MgpstrForSceneTextRecognition",
]
if TYPE_CHECKING:
from .configuration_mgp_str import MGP_STR_PRETRAINED_CONFIG_ARCHIVE_MAP, MgpstrConfig
from .processing_mgp_str import MgpstrProcessor
from .tokenization_mgp_str import MgpstrTokenizer
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_mgp_str import (
MGP_STR_PRETRAINED_MODEL_ARCHIVE_LIST,
MgpstrForSceneTextRecognition,
MgpstrModel,
MgpstrPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/mgp_str/tokenization_mgp_str.py | # coding=utf-8
# Copyright 2023 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes for MGT-STR CHAR."""
import json
import os
from typing import Optional, Tuple
from ...tokenization_utils import PreTrainedTokenizer
from ...utils import logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "vocab.json"}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {
"mgp-str": "https://huggingface.co/alibaba-damo/mgp-str-base/blob/main/vocab.json",
}
}
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {"mgp-str": 27}
class MgpstrTokenizer(PreTrainedTokenizer):
"""
Construct a MGP-STR char tokenizer.
This tokenizer inherits from [`PreTrainedTokenizer`] which contains most of the main methods. Users should refer to
this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
Path to the vocabulary file.
unk_token (`str`, *optional*, defaults to `"[GO]"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
bos_token (`str`, *optional*, defaults to `"[GO]"`):
The beginning of sequence token.
eos_token (`str`, *optional*, defaults to `"[s]"`):
The end of sequence token.
pad_token (`str` or `tokenizers.AddedToken`, *optional*, defaults to `"[GO]"`):
A special token used to make arrays of tokens the same size for batching purpose. Will then be ignored by
attention mechanisms or loss computation.
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
def __init__(self, vocab_file, unk_token="[GO]", bos_token="[GO]", eos_token="[s]", pad_token="[GO]", **kwargs):
with open(vocab_file, encoding="utf-8") as vocab_handle:
self.vocab = json.load(vocab_handle)
self.decoder = {v: k for k, v in self.vocab.items()}
super().__init__(
unk_token=unk_token,
bos_token=bos_token,
eos_token=eos_token,
pad_token=pad_token,
**kwargs,
)
@property
def vocab_size(self):
return len(self.vocab)
def get_vocab(self):
vocab = dict(self.vocab).copy()
vocab.update(self.added_tokens_encoder)
return vocab
def _tokenize(self, text):
"""Tokenize a string."""
char_tokens = []
for s in text:
char_tokens.extend(s)
return char_tokens
def _convert_token_to_id(self, token):
"""Converts a token (str) in an id using the vocab."""
return self.vocab.get(token, self.vocab.get(self.unk_token))
def _convert_id_to_token(self, index):
"""Converts an index (integer) in a token (str) using the vocab."""
return self.decoder.get(index)
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not os.path.isdir(save_directory):
logger.error("Vocabulary path ({}) should be a directory".format(save_directory))
return
vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
with open(vocab_file, "w", encoding="utf-8") as f:
f.write(json.dumps(self.vocab, indent=2, sort_keys=True, ensure_ascii=False) + "\n")
return (vocab_file,)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/mgp_str/modeling_mgp_str.py | # coding=utf-8
# Copyright 2023 Alibaba Research and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch MGP-STR model."""
import collections.abc
from dataclasses import dataclass
from typing import Optional, Tuple, Union
import torch
import torch.nn.functional as F
import torch.utils.checkpoint
from torch import nn
from ...modeling_outputs import BaseModelOutput
from ...modeling_utils import PreTrainedModel
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_mgp_str import MgpstrConfig
logger = logging.get_logger(__name__)
# General docstring
_CONFIG_FOR_DOC = "MgpstrConfig"
_TOKENIZER_FOR_DOC = "MgpstrTokenizer"
# Base docstring
_CHECKPOINT_FOR_DOC = "alibaba-damo/mgp-str-base"
MGP_STR_PRETRAINED_MODEL_ARCHIVE_LIST = [
"alibaba-damo/mgp-str-base",
# See all MGP-STR models at https://huggingface.co/models?filter=mgp-str
]
# Copied from transformers.models.beit.modeling_beit.drop_path
def drop_path(input: torch.Tensor, drop_prob: float = 0.0, training: bool = False) -> torch.Tensor:
"""
Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks).
Comment by Ross Wightman: This is the same as the DropConnect impl I created for EfficientNet, etc networks,
however, the original name is misleading as 'Drop Connect' is a different form of dropout in a separate paper...
See discussion: https://github.com/tensorflow/tpu/issues/494#issuecomment-532968956 ... I've opted for changing the
layer and argument names to 'drop path' rather than mix DropConnect as a layer name and use 'survival rate' as the
argument.
"""
if drop_prob == 0.0 or not training:
return input
keep_prob = 1 - drop_prob
shape = (input.shape[0],) + (1,) * (input.ndim - 1) # work with diff dim tensors, not just 2D ConvNets
random_tensor = keep_prob + torch.rand(shape, dtype=input.dtype, device=input.device)
random_tensor.floor_() # binarize
output = input.div(keep_prob) * random_tensor
return output
# Copied from transformers.models.beit.modeling_beit.BeitDropPath with Beit->Mgpstr
class MgpstrDropPath(nn.Module):
"""Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks)."""
def __init__(self, drop_prob: Optional[float] = None) -> None:
super().__init__()
self.drop_prob = drop_prob
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
return drop_path(hidden_states, self.drop_prob, self.training)
def extra_repr(self) -> str:
return "p={}".format(self.drop_prob)
@dataclass
class MgpstrModelOutput(ModelOutput):
"""
Base class for vision model's outputs that also contains image embeddings of the pooling of the last hidden states.
Args:
logits (`tuple(torch.FloatTensor)` of shape `(batch_size, config.num_character_labels)`):
Tuple of `torch.FloatTensor` (one for the output of character of shape `(batch_size,
config.max_token_length, config.num_character_labels)`, + one for the output of bpe of shape `(batch_size,
config.max_token_length, config.num_bpe_labels)`, + one for the output of wordpiece of shape `(batch_size,
config.max_token_length, config.num_wordpiece_labels)`) .
Classification scores (before SoftMax) of character, bpe and wordpiece.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings, if the model has an embedding layer, +
one for the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the optional initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, config.max_token_length,
sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
a3_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_a3_attentions=True` is passed or when `config.output_a3_attentions=True`):
Tuple of `torch.FloatTensor` (one for the attention of character, + one for the attention of bpe`, + one
for the attention of wordpiece) of shape `(batch_size, config.max_token_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
logits: Tuple[torch.FloatTensor] = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
a3_attentions: Optional[Tuple[torch.FloatTensor]] = None
class MgpstrEmbeddings(nn.Module):
"""2D Image to Patch Embedding"""
def __init__(self, config: MgpstrConfig):
super().__init__()
image_size = (
config.image_size
if isinstance(config.image_size, collections.abc.Iterable)
else (config.image_size, config.image_size)
)
patch_size = (
config.patch_size
if isinstance(config.patch_size, collections.abc.Iterable)
else (config.patch_size, config.patch_size)
)
self.image_size = image_size
self.patch_size = patch_size
self.grid_size = (image_size[0] // patch_size[0], image_size[1] // patch_size[1])
self.num_patches = self.grid_size[0] * self.grid_size[1]
self.num_tokens = 2 if config.distilled else 1
self.proj = nn.Conv2d(config.num_channels, config.hidden_size, kernel_size=patch_size, stride=patch_size)
self.cls_token = nn.Parameter(torch.zeros(1, 1, config.hidden_size))
self.pos_embed = nn.Parameter(torch.zeros(1, self.num_patches + self.num_tokens, config.hidden_size))
self.pos_drop = nn.Dropout(p=config.drop_rate)
def forward(self, pixel_values):
batch_size, channel, height, width = pixel_values.shape
if height != self.image_size[0] or width != self.image_size[1]:
raise ValueError(
f"Input image size ({height}*{width}) doesn't match model ({self.image_size[0]}*{self.image_size[1]})."
)
patch_embeddings = self.proj(pixel_values)
patch_embeddings = patch_embeddings.flatten(2).transpose(1, 2) # BCHW -> BNC
cls_tokens = self.cls_token.expand(batch_size, -1, -1)
embedding_output = torch.cat((cls_tokens, patch_embeddings), dim=1)
embedding_output = embedding_output + self.pos_embed
embedding_output = self.pos_drop(embedding_output)
return embedding_output
class MgpstrMlp(nn.Module):
"""MLP as used in Vision Transformer, MLP-Mixer and related networks"""
def __init__(self, config: MgpstrConfig, hidden_features):
super().__init__()
hidden_features = hidden_features or config.hidden_size
self.fc1 = nn.Linear(config.hidden_size, hidden_features)
self.act = nn.GELU()
self.fc2 = nn.Linear(hidden_features, config.hidden_size)
self.drop = nn.Dropout(config.drop_rate)
def forward(self, hidden_states):
hidden_states = self.fc1(hidden_states)
hidden_states = self.act(hidden_states)
hidden_states = self.drop(hidden_states)
hidden_states = self.fc2(hidden_states)
hidden_states = self.drop(hidden_states)
return hidden_states
class MgpstrAttention(nn.Module):
def __init__(self, config: MgpstrConfig):
super().__init__()
self.num_heads = config.num_attention_heads
head_dim = config.hidden_size // config.num_attention_heads
self.scale = head_dim**-0.5
self.qkv = nn.Linear(config.hidden_size, config.hidden_size * 3, bias=config.qkv_bias)
self.attn_drop = nn.Dropout(config.attn_drop_rate)
self.proj = nn.Linear(config.hidden_size, config.hidden_size)
self.proj_drop = nn.Dropout(config.drop_rate)
def forward(self, hidden_states):
batch_size, num, channel = hidden_states.shape
qkv = (
self.qkv(hidden_states)
.reshape(batch_size, num, 3, self.num_heads, channel // self.num_heads)
.permute(2, 0, 3, 1, 4)
)
query, key, value = qkv[0], qkv[1], qkv[2] # make torchscript happy (cannot use tensor as tuple)
attention_probs = (query @ key.transpose(-2, -1)) * self.scale
attention_probs = attention_probs.softmax(dim=-1)
attention_probs = self.attn_drop(attention_probs)
context_layer = (attention_probs @ value).transpose(1, 2).reshape(batch_size, num, channel)
context_layer = self.proj(context_layer)
context_layer = self.proj_drop(context_layer)
return (context_layer, attention_probs)
class MgpstrLayer(nn.Module):
def __init__(self, config: MgpstrConfig, drop_path=None):
super().__init__()
self.norm1 = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.attn = MgpstrAttention(config)
# NOTE: drop path for stochastic depth, we shall see if this is better than dropout here
self.drop_path = MgpstrDropPath(drop_path) if drop_path is not None else nn.Identity()
self.norm2 = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
mlp_hidden_dim = int(config.hidden_size * config.mlp_ratio)
self.mlp = MgpstrMlp(config, mlp_hidden_dim)
def forward(self, hidden_states):
self_attention_outputs = self.attn(self.norm1(hidden_states))
attention_output = self_attention_outputs[0]
outputs = self_attention_outputs[1]
# first residual connection
hidden_states = self.drop_path(attention_output) + hidden_states
# second residual connection is done here
layer_output = hidden_states + self.drop_path(self.mlp(self.norm2(hidden_states)))
outputs = (layer_output, outputs)
return outputs
class MgpstrEncoder(nn.Module):
def __init__(self, config: MgpstrConfig):
super().__init__()
# stochastic depth decay rule
dpr = [x.item() for x in torch.linspace(0, config.drop_path_rate, config.num_hidden_layers)]
self.blocks = nn.Sequential(
*[MgpstrLayer(config=config, drop_path=dpr[i]) for i in range(config.num_hidden_layers)]
)
def forward(self, hidden_states, output_attentions=False, output_hidden_states=False, return_dict=True):
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
for _, blk in enumerate(self.blocks):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_outputs = blk(hidden_states)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_self_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
class MgpstrA3Module(nn.Module):
def __init__(self, config: MgpstrConfig):
super().__init__()
self.token_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.tokenLearner = nn.Sequential(
nn.Conv2d(config.hidden_size, config.hidden_size, kernel_size=(1, 1), stride=1, groups=8, bias=False),
nn.Conv2d(config.hidden_size, config.max_token_length, kernel_size=(1, 1), stride=1, bias=False),
)
self.feat = nn.Conv2d(
config.hidden_size, config.hidden_size, kernel_size=(1, 1), stride=1, groups=8, bias=False
)
self.norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(self, hidden_states):
hidden_states = self.token_norm(hidden_states)
hidden_states = hidden_states.transpose(1, 2).unsqueeze(-1)
selected = self.tokenLearner(hidden_states)
selected = selected.flatten(2)
attentions = F.softmax(selected, dim=-1)
feat = self.feat(hidden_states)
feat = feat.flatten(2).transpose(1, 2)
feat = torch.einsum("...si,...id->...sd", attentions, feat)
a3_out = self.norm(feat)
return (a3_out, attentions)
class MgpstrPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = MgpstrConfig
base_model_prefix = "mgp_str"
def _init_weights(self, module: Union[nn.Linear, nn.Conv2d, nn.LayerNorm]) -> None:
"""Initialize the weights"""
if isinstance(module, MgpstrEmbeddings):
nn.init.trunc_normal_(module.pos_embed, mean=0.0, std=self.config.initializer_range)
nn.init.trunc_normal_(module.cls_token, mean=0.0, std=self.config.initializer_range)
elif isinstance(module, (nn.Linear, nn.Conv2d)):
module.weight.data = nn.init.trunc_normal_(module.weight.data, mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
MGP_STR_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass. Use it
as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`MgpstrConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
MGP_STR_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`AutoImageProcessor`]. See [`ViTImageProcessor.__call__`]
for details.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare MGP-STR Model transformer outputting raw hidden-states without any specific head on top.",
MGP_STR_START_DOCSTRING,
)
class MgpstrModel(MgpstrPreTrainedModel):
def __init__(self, config: MgpstrConfig):
super().__init__(config)
self.config = config
self.embeddings = MgpstrEmbeddings(config)
self.encoder = MgpstrEncoder(config)
def get_input_embeddings(self) -> nn.Module:
return self.embeddings.proj
@add_start_docstrings_to_model_forward(MGP_STR_INPUTS_DOCSTRING)
def forward(
self,
pixel_values: torch.FloatTensor,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.FloatTensor], BaseModelOutput]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if pixel_values is None:
raise ValueError("You have to specify pixel_values")
embedding_output = self.embeddings(pixel_values)
encoder_outputs = self.encoder(
embedding_output,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
if not return_dict:
return encoder_outputs
return BaseModelOutput(
last_hidden_state=encoder_outputs.last_hidden_state,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
@add_start_docstrings(
"""
MGP-STR Model transformer with three classification heads on top (three A^3 modules and three linear layer on top
of the transformer encoder output) for scene text recognition (STR) .
""",
MGP_STR_START_DOCSTRING,
)
class MgpstrForSceneTextRecognition(MgpstrPreTrainedModel):
config_class = MgpstrConfig
main_input_name = "pixel_values"
def __init__(self, config: MgpstrConfig) -> None:
super().__init__(config)
self.num_labels = config.num_labels
self.mgp_str = MgpstrModel(config)
self.char_a3_module = MgpstrA3Module(config)
self.bpe_a3_module = MgpstrA3Module(config)
self.wp_a3_module = MgpstrA3Module(config)
self.char_head = nn.Linear(config.hidden_size, config.num_character_labels)
self.bpe_head = nn.Linear(config.hidden_size, config.num_bpe_labels)
self.wp_head = nn.Linear(config.hidden_size, config.num_wordpiece_labels)
@add_start_docstrings_to_model_forward(MGP_STR_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=MgpstrModelOutput, config_class=MgpstrConfig)
def forward(
self,
pixel_values: torch.FloatTensor,
output_attentions: Optional[bool] = None,
output_a3_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.FloatTensor], MgpstrModelOutput]:
r"""
output_a3_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of a3 modules. See `a3_attentions` under returned tensors
for more detail.
Returns:
Example:
```python
>>> from transformers import (
... MgpstrProcessor,
... MgpstrForSceneTextRecognition,
... )
>>> import requests
>>> from PIL import Image
>>> # load image from the IIIT-5k dataset
>>> url = "https://i.postimg.cc/ZKwLg2Gw/367-14.png"
>>> image = Image.open(requests.get(url, stream=True).raw).convert("RGB")
>>> processor = MgpstrProcessor.from_pretrained("alibaba-damo/mgp-str-base")
>>> pixel_values = processor(images=image, return_tensors="pt").pixel_values
>>> model = MgpstrForSceneTextRecognition.from_pretrained("alibaba-damo/mgp-str-base")
>>> # inference
>>> outputs = model(pixel_values)
>>> out_strs = processor.batch_decode(outputs.logits)
>>> out_strs["generated_text"]
'["ticket"]'
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
mgp_outputs = self.mgp_str(
pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = mgp_outputs[0]
char_a3_out, char_attention = self.char_a3_module(sequence_output)
bpe_a3_out, bpe_attention = self.bpe_a3_module(sequence_output)
wp_a3_out, wp_attention = self.wp_a3_module(sequence_output)
char_logits = self.char_head(char_a3_out)
bpe_logits = self.bpe_head(bpe_a3_out)
wp_logits = self.wp_head(wp_a3_out)
all_a3_attentions = (char_attention, bpe_attention, wp_attention) if output_a3_attentions else None
all_logits = (char_logits, bpe_logits, wp_logits)
if not return_dict:
outputs = (all_logits, all_a3_attentions) + mgp_outputs[1:]
return tuple(output for output in outputs if output is not None)
return MgpstrModelOutput(
logits=all_logits,
hidden_states=mgp_outputs.hidden_states,
attentions=mgp_outputs.attentions,
a3_attentions=all_a3_attentions,
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/mgp_str/processing_mgp_str.py | # coding=utf-8
# Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Processor class for MGP-STR."""
import warnings
from transformers import AutoTokenizer
from transformers.utils import is_torch_available
from transformers.utils.generic import ExplicitEnum
from ...processing_utils import ProcessorMixin
if is_torch_available():
import torch
class DecodeType(ExplicitEnum):
CHARACTER = "char"
BPE = "bpe"
WORDPIECE = "wp"
SUPPORTED_ANNOTATION_FORMATS = (DecodeType.CHARACTER, DecodeType.BPE, DecodeType.WORDPIECE)
class MgpstrProcessor(ProcessorMixin):
r"""
Constructs a MGP-STR processor which wraps an image processor and MGP-STR tokenizers into a single
[`MgpstrProcessor`] offers all the functionalities of `ViTImageProcessor`] and [`MgpstrTokenizer`]. See the
[`~MgpstrProcessor.__call__`] and [`~MgpstrProcessor.batch_decode`] for more information.
Args:
image_processor (`ViTImageProcessor`, *optional*):
An instance of `ViTImageProcessor`. The image processor is a required input.
tokenizer ([`MgpstrTokenizer`], *optional*):
The tokenizer is a required input.
"""
attributes = ["image_processor", "char_tokenizer"]
image_processor_class = "ViTImageProcessor"
char_tokenizer_class = "MgpstrTokenizer"
def __init__(self, image_processor=None, tokenizer=None, **kwargs):
feature_extractor = None
if "feature_extractor" in kwargs:
warnings.warn(
"The `feature_extractor` argument is deprecated and will be removed in v5, use `image_processor`"
" instead.",
FutureWarning,
)
feature_extractor = kwargs.pop("feature_extractor")
image_processor = image_processor if image_processor is not None else feature_extractor
if image_processor is None:
raise ValueError("You need to specify an `image_processor`.")
if tokenizer is None:
raise ValueError("You need to specify a `tokenizer`.")
self.char_tokenizer = tokenizer
self.bpe_tokenizer = AutoTokenizer.from_pretrained("gpt2")
self.wp_tokenizer = AutoTokenizer.from_pretrained("bert-base-uncased")
super().__init__(image_processor, tokenizer)
def __call__(self, text=None, images=None, return_tensors=None, **kwargs):
"""
When used in normal mode, this method forwards all its arguments to ViTImageProcessor's
[`~ViTImageProcessor.__call__`] and returns its output. This method also forwards the `text` and `kwargs`
arguments to MgpstrTokenizer's [`~MgpstrTokenizer.__call__`] if `text` is not `None` to encode the text. Please
refer to the doctsring of the above methods for more information.
"""
if images is None and text is None:
raise ValueError("You need to specify either an `images` or `text` input to process.")
if images is not None:
inputs = self.image_processor(images, return_tensors=return_tensors, **kwargs)
if text is not None:
encodings = self.char_tokenizer(text, return_tensors=return_tensors, **kwargs)
if text is None:
return inputs
elif images is None:
return encodings
else:
inputs["labels"] = encodings["input_ids"]
return inputs
def batch_decode(self, sequences):
"""
Convert a list of lists of token ids into a list of strings by calling decode.
Args:
sequences (`torch.Tensor`):
List of tokenized input ids.
Returns:
`Dict[str, any]`: Dictionary of all the outputs of the decoded results.
generated_text (`List[str]`): The final results after fusion of char, bpe, and wp. scores
(`List[float]`): The final scores after fusion of char, bpe, and wp. char_preds (`List[str]`): The list
of character decoded sentences. bpe_preds (`List[str]`): The list of bpe decoded sentences. wp_preds
(`List[str]`): The list of wp decoded sentences.
This method forwards all its arguments to PreTrainedTokenizer's [`~PreTrainedTokenizer.batch_decode`]. Please
refer to the docstring of this method for more information.
"""
char_preds, bpe_preds, wp_preds = sequences
batch_size = char_preds.size(0)
char_strs, char_scores = self._decode_helper(char_preds, "char")
bpe_strs, bpe_scores = self._decode_helper(bpe_preds, "bpe")
wp_strs, wp_scores = self._decode_helper(wp_preds, "wp")
final_strs = []
final_scores = []
for i in range(batch_size):
scores = [char_scores[i], bpe_scores[i], wp_scores[i]]
strs = [char_strs[i], bpe_strs[i], wp_strs[i]]
max_score_index = scores.index(max(scores))
final_strs.append(strs[max_score_index])
final_scores.append(scores[max_score_index])
out = {}
out["generated_text"] = final_strs
out["scores"] = final_scores
out["char_preds"] = char_strs
out["bpe_preds"] = bpe_strs
out["wp_preds"] = wp_strs
return out
def _decode_helper(self, pred_logits, format):
"""
Convert a list of lists of bpe token ids into a list of strings by calling bpe tokenizer.
Args:
pred_logits (`torch.Tensor`):
List of model prediction logits.
format (`Union[DecoderType, str]`):
Type of model prediction. Must be one of ['char', 'bpe', 'wp'].
Returns:
`tuple`:
dec_strs(`str`): The decode strings of model prediction. conf_scores(`List[float]`): The confidence
score of model prediction.
"""
if format == DecodeType.CHARACTER:
decoder = self.char_decode
eos_token = 1
eos_str = "[s]"
elif format == DecodeType.BPE:
decoder = self.bpe_decode
eos_token = 2
eos_str = "#"
elif format == DecodeType.WORDPIECE:
decoder = self.wp_decode
eos_token = 102
eos_str = "[SEP]"
else:
raise ValueError(f"Format {format} is not supported.")
dec_strs, conf_scores = [], []
batch_size = pred_logits.size(0)
batch_max_length = pred_logits.size(1)
_, preds_index = pred_logits.topk(1, dim=-1, largest=True, sorted=True)
preds_index = preds_index.view(-1, batch_max_length)[:, 1:]
preds_str = decoder(preds_index)
preds_max_prob, _ = torch.nn.functional.softmax(pred_logits, dim=2).max(dim=2)
preds_max_prob = preds_max_prob[:, 1:]
for index in range(batch_size):
pred_eos = preds_str[index].find(eos_str)
pred = preds_str[index][:pred_eos]
pred_index = preds_index[index].cpu().tolist()
pred_eos_index = pred_index.index(eos_token) if eos_token in pred_index else -1
pred_max_prob = preds_max_prob[index][: pred_eos_index + 1]
confidence_score = pred_max_prob.cumprod(dim=0)[-1] if pred_max_prob.nelement() != 0 else 0.0
dec_strs.append(pred)
conf_scores.append(confidence_score)
return dec_strs, conf_scores
def char_decode(self, sequences):
"""
Convert a list of lists of char token ids into a list of strings by calling char tokenizer.
Args:
sequences (`torch.Tensor`):
List of tokenized input ids.
Returns:
`List[str]`: The list of char decoded sentences.
"""
decode_strs = [seq.replace(" ", "") for seq in self.char_tokenizer.batch_decode(sequences)]
return decode_strs
def bpe_decode(self, sequences):
"""
Convert a list of lists of bpe token ids into a list of strings by calling bpe tokenizer.
Args:
sequences (`torch.Tensor`):
List of tokenized input ids.
Returns:
`List[str]`: The list of bpe decoded sentences.
"""
return self.bpe_tokenizer.batch_decode(sequences)
def wp_decode(self, sequences):
"""
Convert a list of lists of word piece token ids into a list of strings by calling word piece tokenizer.
Args:
sequences (`torch.Tensor`):
List of tokenized input ids.
Returns:
`List[str]`: The list of wp decoded sentences.
"""
decode_strs = [seq.replace(" ", "") for seq in self.wp_tokenizer.batch_decode(sequences)]
return decode_strs
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/mgp_str/configuration_mgp_str.py | # coding=utf-8
# Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" MGP-STR model configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
MGP_STR_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"alibaba-damo/mgp-str-base": "https://huggingface.co/alibaba-damo/mgp-str-base/resolve/main/config.json",
}
class MgpstrConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of an [`MgpstrModel`]. It is used to instantiate an
MGP-STR model according to the specified arguments, defining the model architecture. Instantiating a configuration
with the defaults will yield a similar configuration to that of the MGP-STR
[alibaba-damo/mgp-str-base](https://huggingface.co/alibaba-damo/mgp-str-base) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
image_size (`List[int]`, *optional*, defaults to `[32, 128]`):
The size (resolution) of each image.
patch_size (`int`, *optional*, defaults to 4):
The size (resolution) of each patch.
num_channels (`int`, *optional*, defaults to 3):
The number of input channels.
max_token_length (`int`, *optional*, defaults to 27):
The max number of output tokens.
num_character_labels (`int`, *optional*, defaults to 38):
The number of classes for character head .
num_bpe_labels (`int`, *optional*, defaults to 50257):
The number of classes for bpe head .
num_wordpiece_labels (`int`, *optional*, defaults to 30522):
The number of classes for wordpiece head .
hidden_size (`int`, *optional*, defaults to 768):
The embedding dimension.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
mlp_ratio (`float`, *optional*, defaults to 4.0):
The ratio of mlp hidden dim to embedding dim.
qkv_bias (`bool`, *optional*, defaults to `True`):
Whether to add a bias to the queries, keys and values.
distilled (`bool`, *optional*, defaults to `False`):
Model includes a distillation token and head as in DeiT models.
layer_norm_eps (`float`, *optional*, defaults to 1e-05):
The epsilon used by the layer normalization layers.
drop_rate (`float`, *optional*, defaults to 0.0):
The dropout probability for all fully connected layers in the embeddings, encoder.
attn_drop_rate (`float`, *optional*, defaults to 0.0):
The dropout ratio for the attention probabilities.
drop_path_rate (`float`, *optional*, defaults to 0.0):
The stochastic depth rate.
output_a3_attentions (`bool`, *optional*, defaults to `False`):
Whether or not the model should returns A^3 module attentions.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
Example:
```python
>>> from transformers import MgpstrConfig, MgpstrForSceneTextRecognition
>>> # Initializing a Mgpstr mgp-str-base style configuration
>>> configuration = MgpstrConfig()
>>> # Initializing a model (with random weights) from the mgp-str-base style configuration
>>> model = MgpstrForSceneTextRecognition(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "mgp-str"
def __init__(
self,
image_size=[32, 128],
patch_size=4,
num_channels=3,
max_token_length=27,
num_character_labels=38,
num_bpe_labels=50257,
num_wordpiece_labels=30522,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
mlp_ratio=4.0,
qkv_bias=True,
distilled=False,
layer_norm_eps=1e-5,
drop_rate=0.0,
attn_drop_rate=0.0,
drop_path_rate=0.0,
output_a3_attentions=False,
initializer_range=0.02,
**kwargs,
):
super().__init__(**kwargs)
self.image_size = image_size
self.patch_size = patch_size
self.num_channels = num_channels
self.max_token_length = max_token_length
self.num_character_labels = num_character_labels
self.num_bpe_labels = num_bpe_labels
self.num_wordpiece_labels = num_wordpiece_labels
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.mlp_ratio = mlp_ratio
self.distilled = distilled
self.layer_norm_eps = layer_norm_eps
self.drop_rate = drop_rate
self.qkv_bias = qkv_bias
self.attn_drop_rate = attn_drop_rate
self.drop_path_rate = drop_path_rate
self.output_a3_attentions = output_a3_attentions
self.initializer_range = initializer_range
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/cpm/tokenization_cpm.py | # coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes."""
import os
import unicodedata
from shutil import copyfile
from typing import Any, Dict, List, Optional, Tuple
import sentencepiece as spm
from ...tokenization_utils import AddedToken, PreTrainedTokenizer
from ...utils import SPIECE_UNDERLINE, logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "spiece.model"}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {
"TsinghuaAI/CPM-Generate": "https://huggingface.co/TsinghuaAI/CPM-Generate/resolve/main/spiece.model",
}
}
class CpmTokenizer(PreTrainedTokenizer):
"""Runs pre-tokenization with Jieba segmentation tool. It is used in CPM models."""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
def __init__(
self,
vocab_file,
do_lower_case=False,
remove_space=True,
keep_accents=False,
bos_token="<s>",
eos_token="</s>",
unk_token="<unk>",
sep_token="<sep>",
pad_token="<pad>",
cls_token="<cls>",
mask_token="<mask>",
additional_special_tokens=["<eop>", "<eod>"],
sp_model_kwargs: Optional[Dict[str, Any]] = None,
**kwargs,
) -> None:
"""
Construct a CPM tokenizer. Based on [Jieba](https://pypi.org/project/jieba/) and
[SentencePiece](https://github.com/google/sentencepiece).
This tokenizer inherits from [`PreTrainedTokenizer`] which contains most of the main methods. Users should
refer to this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
[SentencePiece](https://github.com/google/sentencepiece) file (generally has a .spm extension) that
contains the vocabulary necessary to instantiate a tokenizer.
do_lower_case (`bool`, *optional*, defaults to `True`):
Whether to lowercase the input when tokenizing.
remove_space (`bool`, *optional*, defaults to `True`):
Whether to strip the text when tokenizing (removing excess spaces before and after the string).
keep_accents (`bool`, *optional*, defaults to `False`):
Whether to keep accents when tokenizing.
bos_token (`str`, *optional*, defaults to `"<s>"`):
The beginning of sequence token that was used during pretraining. Can be used a sequence classifier
token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the beginning of
sequence. The token used is the `cls_token`.
</Tip>
eos_token (`str`, *optional*, defaults to `"</s>"`):
The end of sequence token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the end of
sequence. The token used is the `sep_token`.
</Tip>
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be
this token instead.
sep_token (`str`, *optional*, defaults to `"<sep>"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences
for sequence classification or for a text and a question for question answering. It is also used as the
last token of a sequence built with special tokens.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
cls_token (`str`, *optional*, defaults to `"<cls>"`):
The classifier token which is used when doing sequence classification (classification of the whole
sequence instead of per-token classification). It is the first token of the sequence when built with
special tokens.
mask_token (`str`, *optional*, defaults to `"<mask>"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
additional_special_tokens (`List[str]`, *optional*, defaults to `["<eop>", "<eod>"]`):
Additional special tokens used by the tokenizer.
Attributes:
sp_model (`SentencePieceProcessor`):
The *SentencePiece* processor that is used for every conversion (string, tokens and IDs).
"""
# Mask token behave like a normal word, i.e. include the space before it
mask_token = AddedToken(mask_token, lstrip=True, rstrip=False) if isinstance(mask_token, str) else mask_token
self.sp_model_kwargs = {} if sp_model_kwargs is None else sp_model_kwargs
self.do_lower_case = do_lower_case
self.remove_space = remove_space
self.keep_accents = keep_accents
self.vocab_file = vocab_file
self.sp_model = spm.SentencePieceProcessor(**self.sp_model_kwargs)
self.sp_model.Load(vocab_file)
try:
import jieba
except ModuleNotFoundError as error:
raise error.__class__(
"You need to install jieba to use CpmTokenizer or CpmTokenizerFast. "
"See https://pypi.org/project/jieba/ for installation."
)
self.jieba = jieba
self.translator = str.maketrans(" \n", "\u2582\u2583")
super().__init__(
do_lower_case=do_lower_case,
remove_space=remove_space,
keep_accents=keep_accents,
bos_token=bos_token,
eos_token=eos_token,
unk_token=unk_token,
sep_token=sep_token,
pad_token=pad_token,
cls_token=cls_token,
mask_token=mask_token,
additional_special_tokens=additional_special_tokens,
sp_model_kwargs=self.sp_model_kwargs,
**kwargs,
)
self._pad_token_type_id = 3
@property
# Copied from transformers.models.xlnet.tokenization_xlnet.XLNetTokenizer.vocab_size
def vocab_size(self):
return len(self.sp_model)
# Copied from transformers.models.xlnet.tokenization_xlnet.XLNetTokenizer.get_vocab
def get_vocab(self):
vocab = {self.convert_ids_to_tokens(i): i for i in range(self.vocab_size)}
vocab.update(self.added_tokens_encoder)
return vocab
# Copied from transformers.models.xlnet.tokenization_xlnet.XLNetTokenizer.__getstate__
def __getstate__(self):
state = self.__dict__.copy()
state["sp_model"] = None
return state
# Copied from transformers.models.xlnet.tokenization_xlnet.XLNetTokenizer.__setstate__
def __setstate__(self, d):
self.__dict__ = d
# for backward compatibility
if not hasattr(self, "sp_model_kwargs"):
self.sp_model_kwargs = {}
self.sp_model = spm.SentencePieceProcessor(**self.sp_model_kwargs)
self.sp_model.Load(self.vocab_file)
# Copied from transformers.models.xlnet.tokenization_xlnet.XLNetTokenizer.preprocess_text
def preprocess_text(self, inputs):
if self.remove_space:
outputs = " ".join(inputs.strip().split())
else:
outputs = inputs
outputs = outputs.replace("``", '"').replace("''", '"')
if not self.keep_accents:
outputs = unicodedata.normalize("NFKD", outputs)
outputs = "".join([c for c in outputs if not unicodedata.combining(c)])
if self.do_lower_case:
outputs = outputs.lower()
return outputs
# Copied from transformers.models.xlnet.tokenization_xlnet.XLNetTokenizer._tokenize
def _tokenize(self, text: str) -> List[str]:
"""Tokenize a string."""
text = self.preprocess_text(text)
pieces = self.sp_model.encode(text, out_type=str)
new_pieces = []
for piece in pieces:
if len(piece) > 1 and piece[-1] == str(",") and piece[-2].isdigit():
cur_pieces = self.sp_model.EncodeAsPieces(piece[:-1].replace(SPIECE_UNDERLINE, ""))
if piece[0] != SPIECE_UNDERLINE and cur_pieces[0][0] == SPIECE_UNDERLINE:
if len(cur_pieces[0]) == 1:
cur_pieces = cur_pieces[1:]
else:
cur_pieces[0] = cur_pieces[0][1:]
cur_pieces.append(piece[-1])
new_pieces.extend(cur_pieces)
else:
new_pieces.append(piece)
return new_pieces
# Copied from transformers.models.xlnet.tokenization_xlnet.XLNetTokenizer._convert_token_to_id
def _convert_token_to_id(self, token):
"""Converts a token (str) in an id using the vocab."""
return self.sp_model.PieceToId(token)
# Copied from transformers.models.xlnet.tokenization_xlnet.XLNetTokenizer._convert_id_to_token
def _convert_id_to_token(self, index):
"""Converts an index (integer) in a token (str) using the vocab."""
return self.sp_model.IdToPiece(index)
# Copied from transformers.models.xlnet.tokenization_xlnet.XLNetTokenizer.convert_tokens_to_string
def convert_tokens_to_string(self, tokens):
"""Converts a sequence of tokens (strings for sub-words) in a single string."""
out_string = "".join(tokens).replace(SPIECE_UNDERLINE, " ").strip()
return out_string
# Copied from transformers.models.xlnet.tokenization_xlnet.XLNetTokenizer.build_inputs_with_special_tokens
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. An XLNet sequence has the following format:
- single sequence: `X <sep> <cls>`
- pair of sequences: `A <sep> B <sep> <cls>`
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return token_ids_0 + sep + cls
return token_ids_0 + sep + token_ids_1 + sep + cls
# Copied from transformers.models.xlnet.tokenization_xlnet.XLNetTokenizer.get_special_tokens_mask
def get_special_tokens_mask(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieve sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer `prepare_for_model` method.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
already_has_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
`List[int]`: A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
return super().get_special_tokens_mask(
token_ids_0=token_ids_0, token_ids_1=token_ids_1, already_has_special_tokens=True
)
if token_ids_1 is not None:
return ([0] * len(token_ids_0)) + [1] + ([0] * len(token_ids_1)) + [1, 1]
return ([0] * len(token_ids_0)) + [1, 1]
# Copied from transformers.models.xlnet.tokenization_xlnet.XLNetTokenizer.create_token_type_ids_from_sequences
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. An XLNet
sequence pair mask has the following format:
```
0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1
| first sequence | second sequence |
```
If `token_ids_1` is `None`, this method only returns the first portion of the mask (0s).
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [token type IDs](../glossary#token-type-ids) according to the given sequence(s).
"""
sep = [self.sep_token_id]
cls_segment_id = [2]
if token_ids_1 is None:
return len(token_ids_0 + sep) * [0] + cls_segment_id
return len(token_ids_0 + sep) * [0] + len(token_ids_1 + sep) * [1] + cls_segment_id
# Copied from transformers.models.xlnet.tokenization_xlnet.XLNetTokenizer.save_vocabulary
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory")
return
out_vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
if os.path.abspath(self.vocab_file) != os.path.abspath(out_vocab_file) and os.path.isfile(self.vocab_file):
copyfile(self.vocab_file, out_vocab_file)
elif not os.path.isfile(self.vocab_file):
with open(out_vocab_file, "wb") as fi:
content_spiece_model = self.sp_model.serialized_model_proto()
fi.write(content_spiece_model)
return (out_vocab_file,)
def _decode(self, *args, **kwargs):
text = super()._decode(*args, **kwargs)
text = text.replace(" ", "").replace("\u2582", " ").replace("\u2583", "\n")
return text
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/cpm/__init__.py | # Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_sentencepiece_available, is_tokenizers_available
_import_structure = {}
try:
if not is_sentencepiece_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["tokenization_cpm"] = ["CpmTokenizer"]
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["tokenization_cpm_fast"] = ["CpmTokenizerFast"]
if TYPE_CHECKING:
try:
if not is_sentencepiece_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .tokenization_cpm import CpmTokenizer
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .tokenization_cpm_fast import CpmTokenizerFast
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/cpm/tokenization_cpm_fast.py | # coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes."""
import os
from shutil import copyfile
from typing import List, Optional, Tuple
from ...tokenization_utils_fast import AddedToken, PreTrainedTokenizerFast
from ...utils import logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "spiece.model", "tokenizer_file": "tokenizer.json"}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {
"TsinghuaAI/CPM-Generate": "https://huggingface.co/TsinghuaAI/CPM-Generate/resolve/main/spiece.model",
},
"tokenizer_file": {
"TsinghuaAI/CPM-Generate": "https://huggingface.co/TsinghuaAI/CPM-Generate/resolve/main/tokenizer.json",
},
}
class CpmTokenizerFast(PreTrainedTokenizerFast):
"""Runs pre-tokenization with Jieba segmentation tool. It is used in CPM models."""
def __init__(
self,
vocab_file=None,
tokenizer_file=None,
do_lower_case=False,
remove_space=True,
keep_accents=False,
bos_token="<s>",
eos_token="</s>",
unk_token="<unk>",
sep_token="<sep>",
pad_token="<pad>",
cls_token="<cls>",
mask_token="<mask>",
additional_special_tokens=["<eop>", "<eod>"],
**kwargs,
):
"""
Construct a CPM tokenizer. Based on [Jieba](https://pypi.org/project/jieba/) and
[SentencePiece](https://github.com/google/sentencepiece).
This tokenizer inherits from [`PreTrainedTokenizer`] which contains most of the main methods. Users should
refer to this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
[SentencePiece](https://github.com/google/sentencepiece) file (generally has a .spm extension) that
contains the vocabulary necessary to instantiate a tokenizer.
do_lower_case (`bool`, *optional*, defaults to `True`):
Whether to lowercase the input when tokenizing.
remove_space (`bool`, *optional*, defaults to `True`):
Whether to strip the text when tokenizing (removing excess spaces before and after the string).
keep_accents (`bool`, *optional*, defaults to `False`):
Whether to keep accents when tokenizing.
bos_token (`str`, *optional*, defaults to `"<s>"`):
The beginning of sequence token that was used during pretraining. Can be used a sequence classifier
token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the beginning of
sequence. The token used is the `cls_token`.
</Tip>
eos_token (`str`, *optional*, defaults to `"</s>"`):
The end of sequence token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the end of
sequence. The token used is the `sep_token`.
</Tip>
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be
this token instead.
sep_token (`str`, *optional*, defaults to `"<sep>"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences
for sequence classification or for a text and a question for question answering. It is also used as the
last token of a sequence built with special tokens.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
cls_token (`str`, *optional*, defaults to `"<cls>"`):
The classifier token which is used when doing sequence classification (classification of the whole
sequence instead of per-token classification). It is the first token of the sequence when built with
special tokens.
mask_token (`str`, *optional*, defaults to `"<mask>"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
additional_special_tokens (`List[str]`, *optional*, defaults to `["<eop>", "<eod>"]`):
Additional special tokens used by the tokenizer.
Attributes:
sp_model (`SentencePieceProcessor`):
The *SentencePiece* processor that is used for every conversion (string, tokens and IDs).
"""
# Mask token behave like a normal word, i.e. include the space before it
mask_token = AddedToken(mask_token, lstrip=True, rstrip=False) if isinstance(mask_token, str) else mask_token
super().__init__(
vocab_file=vocab_file,
tokenizer_file=tokenizer_file,
do_lower_case=do_lower_case,
remove_space=remove_space,
keep_accents=keep_accents,
bos_token=bos_token,
eos_token=eos_token,
unk_token=unk_token,
sep_token=sep_token,
pad_token=pad_token,
cls_token=cls_token,
mask_token=mask_token,
additional_special_tokens=additional_special_tokens,
**kwargs,
)
self._pad_token_type_id = 3
self.do_lower_case = do_lower_case
self.remove_space = remove_space
self.keep_accents = keep_accents
self.vocab_file = vocab_file
try:
import jieba
except ModuleNotFoundError as error:
raise error.__class__(
"You need to install jieba to use CpmTokenizer or CpmTokenizerFast. "
"See https://pypi.org/project/jieba/ for installation."
)
self.jieba = jieba
self.translator = str.maketrans(" \n", "\u2582\u2583")
@property
def can_save_slow_tokenizer(self) -> bool:
return os.path.isfile(self.vocab_file) if self.vocab_file else False
# Copied from transformers.models.xlnet.tokenization_xlnet_fast.XLNetTokenizerFast.build_inputs_with_special_tokens
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. An XLNet sequence has the following format:
- single sequence: `X <sep> <cls>`
- pair of sequences: `A <sep> B <sep> <cls>`
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return token_ids_0 + sep + cls
return token_ids_0 + sep + token_ids_1 + sep + cls
# Copied from transformers.models.xlnet.tokenization_xlnet_fast.XLNetTokenizerFast.create_token_type_ids_from_sequences
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. An XLNet
sequence pair mask has the following format:
```
0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1
| first sequence | second sequence |
```
If `token_ids_1` is `None`, this method only returns the first portion of the mask (0s).
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [token type IDs](../glossary#token-type-ids) according to the given sequence(s).
"""
sep = [self.sep_token_id]
cls_segment_id = [2]
if token_ids_1 is None:
return len(token_ids_0 + sep) * [0] + cls_segment_id
return len(token_ids_0 + sep) * [0] + len(token_ids_1 + sep) * [1] + cls_segment_id
# Copied from transformers.models.xlnet.tokenization_xlnet_fast.XLNetTokenizerFast.save_vocabulary
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not self.can_save_slow_tokenizer:
raise ValueError(
"Your fast tokenizer does not have the necessary information to save the vocabulary for a slow "
"tokenizer."
)
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory")
return
out_vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
if os.path.abspath(self.vocab_file) != os.path.abspath(out_vocab_file):
copyfile(self.vocab_file, out_vocab_file)
return (out_vocab_file,)
def _batch_encode_plus(self, batch_text_or_text_pairs, *args, **kwargs):
batch_text_or_text_pairs = [
" ".join([x.translate(self.translator) for x in self.jieba.cut(text, cut_all=False)])
for text in batch_text_or_text_pairs
]
return super()._batch_encode_plus(batch_text_or_text_pairs, *args, **kwargs)
def _decode(self, *args, **kwargs):
text = super()._decode(*args, **kwargs)
text = text.replace(" ", "").replace("\u2582", " ").replace("\u2583", "\n")
return text
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/hubert/convert_hubert_original_s3prl_checkpoint_to_pytorch.py | # coding=utf-8
# Copyright 2021 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert Hubert checkpoint."""
import argparse
import torch
from transformers import HubertConfig, HubertForSequenceClassification, Wav2Vec2FeatureExtractor, logging
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
SUPPORTED_MODELS = ["UtteranceLevel"]
@torch.no_grad()
def convert_s3prl_checkpoint(base_model_name, config_path, checkpoint_path, model_dump_path):
"""
Copy/paste/tweak model's weights to transformers design.
"""
checkpoint = torch.load(checkpoint_path, map_location="cpu")
if checkpoint["Config"]["downstream_expert"]["modelrc"]["select"] not in SUPPORTED_MODELS:
raise NotImplementedError(f"The supported s3prl models are {SUPPORTED_MODELS}")
downstream_dict = checkpoint["Downstream"]
hf_congfig = HubertConfig.from_pretrained(config_path)
hf_model = HubertForSequenceClassification.from_pretrained(base_model_name, config=hf_congfig)
hf_feature_extractor = Wav2Vec2FeatureExtractor.from_pretrained(
base_model_name, return_attention_mask=True, do_normalize=False
)
if hf_congfig.use_weighted_layer_sum:
hf_model.layer_weights.data = checkpoint["Featurizer"]["weights"]
hf_model.projector.weight.data = downstream_dict["projector.weight"]
hf_model.projector.bias.data = downstream_dict["projector.bias"]
hf_model.classifier.weight.data = downstream_dict["model.post_net.linear.weight"]
hf_model.classifier.bias.data = downstream_dict["model.post_net.linear.bias"]
hf_feature_extractor.save_pretrained(model_dump_path)
hf_model.save_pretrained(model_dump_path)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"--base_model_name", default=None, type=str, help="Name of the huggingface pretrained base model."
)
parser.add_argument("--config_path", default=None, type=str, help="Path to the huggingface classifier config.")
parser.add_argument("--checkpoint_path", default=None, type=str, help="Path to the s3prl checkpoint.")
parser.add_argument("--model_dump_path", default=None, type=str, help="Path to the final converted model.")
args = parser.parse_args()
convert_s3prl_checkpoint(args.base_model_name, args.config_path, args.checkpoint_path, args.model_dump_path)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/hubert/modeling_tf_hubert.py | # coding=utf-8
# Copyright 2021 The Fairseq Authors and the HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" TensorFlow Hubert model."""
from __future__ import annotations
import warnings
from typing import Any, Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import TFBaseModelOutput, TFCausalLMOutput
from ...modeling_tf_utils import (
TFPreTrainedModel,
get_initializer,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_hubert import HubertConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "HubertConfig"
TF_HUBERT_PRETRAINED_MODEL_ARCHIVE_LIST = [
"facebook/hubert-base-ls960",
# See all Hubert models at https://huggingface.co/models?filter=hubert
]
LARGE_NEGATIVE = -1e8
# Copied from transformers.models.wav2vec2.modeling_tf_wav2vec2._sample_without_replacement
def _sample_without_replacement(distribution, num_samples):
"""
Categorical sampling without replacement is currently not implemented. The gumbel-max trick will do for now - see
https://github.com/tensorflow/tensorflow/issues/9260 for more info
"""
z = -tf.math.log(tf.random.uniform(shape_list(distribution), 0, 1))
_, indices = tf.nn.top_k(distribution + z, num_samples)
return indices
# Copied from transformers.models.wav2vec2.modeling_tf_wav2vec2._scatter_values_on_batch_indices
def _scatter_values_on_batch_indices(values, batch_indices, output_shape):
"""
Scatter function as in PyTorch with indices in format (batch_dim, indixes)
"""
indices_shape = shape_list(batch_indices)
# broadcast batch dim to indices_shape
broad_casted_batch_dims = tf.reshape(
tf.broadcast_to(tf.expand_dims(tf.range(indices_shape[0]), axis=-1), indices_shape), [1, -1]
)
# transform batch_indices to pair_indices
pair_indices = tf.transpose(tf.concat([broad_casted_batch_dims, tf.reshape(batch_indices, [1, -1])], 0))
# scatter values to pair indices
return tf.scatter_nd(pair_indices, tf.reshape(values, [-1]), output_shape)
# Copied from transformers.models.wav2vec2.modeling_tf_wav2vec2._compute_mask_indices
def _compute_mask_indices(
shape: Tuple[int, int],
mask_prob: float,
mask_length: int,
min_masks: int = 0,
) -> tf.Tensor:
"""
Computes random mask spans for a given shape
Args:
shape: the shape for which to compute masks.
should be of size 2 where first element is batch size and 2nd is timesteps
attention_mask: optional padding mask of the same size as shape, which will prevent masking padded elements
mask_prob:
probability for each token to be chosen as start of the span to be masked. this will be multiplied by
number of timesteps divided by length of mask span to mask approximately this percentage of all elements.
however due to overlaps, the actual number will be smaller (unless no_overlap is True)
mask_length: size of the mask
min_masks: minimum number of masked spans
Adapted from [fairseq's
data_utils.py](https://github.com/pytorch/fairseq/blob/e0788f7007a8473a76db573985031f3c94201e79/fairseq/data/data_utils.py#L376).
"""
batch_size, sequence_length = shape
if mask_length < 1:
raise ValueError("`mask_length` has to be bigger than 0.")
tf.debugging.assert_less(
mask_length,
sequence_length,
message=(
f"`mask_length` has to be smaller than `sequence_length`, but got `mask_length`: {mask_length} and"
f" `sequence_length`: {sequence_length}`"
),
)
# compute number of masked spans in batch
num_masked_spans = mask_prob * tf.cast(sequence_length, tf.float32) / mask_length + tf.random.uniform((1,))
num_masked_spans = tf.maximum(num_masked_spans, min_masks)
num_masked_spans = tf.cast(num_masked_spans, tf.int32)
# make sure num masked indices <= sequence_length
num_masked_spans = tf.math.minimum(sequence_length // mask_length, num_masked_spans)
num_masked_spans = tf.squeeze(num_masked_spans)
# SpecAugment mask to fill
spec_aug_mask = tf.zeros((batch_size, sequence_length), dtype=tf.int32)
# uniform distribution to sample from, make sure that offset samples are < sequence_length
uniform_dist = tf.ones((batch_size, sequence_length - (mask_length - 1)))
# get random indices to mask
spec_aug_mask_idxs = _sample_without_replacement(uniform_dist, num_masked_spans)
# expand masked indices to masked spans
spec_aug_mask_idxs = tf.expand_dims(spec_aug_mask_idxs, -1)
spec_aug_mask_idxs = tf.tile(spec_aug_mask_idxs, (1, 1, mask_length))
spec_aug_mask_idxs = tf.reshape(spec_aug_mask_idxs, (batch_size, num_masked_spans * mask_length))
offsets = tf.range(mask_length)[tf.newaxis, tf.newaxis, :]
offsets = tf.tile(offsets, (batch_size, num_masked_spans, 1))
offsets = tf.reshape(offsets, (batch_size, num_masked_spans * mask_length))
spec_aug_mask_idxs = spec_aug_mask_idxs + offsets
# scatter indices to mask
spec_aug_mask = _scatter_values_on_batch_indices(
tf.ones_like(spec_aug_mask_idxs), spec_aug_mask_idxs, tf.shape(spec_aug_mask)
)
return spec_aug_mask
# Copied from transformers.models.bart.modeling_tf_bart._expand_mask
def _expand_mask(mask: tf.Tensor, tgt_len: Optional[int] = None):
"""
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
"""
src_len = shape_list(mask)[1]
tgt_len = tgt_len if tgt_len is not None else src_len
one_cst = tf.constant(1.0)
mask = tf.cast(mask, dtype=one_cst.dtype)
expanded_mask = tf.tile(mask[:, None, None, :], (1, 1, tgt_len, 1))
return (one_cst - expanded_mask) * LARGE_NEGATIVE
# Copied from transformers.models.wav2vec2.modeling_tf_wav2vec2.TFWav2Vec2GroupNorm with Wav2Vec2->Hubert
class TFHubertGroupNorm(tf.keras.layers.Layer):
"""
From tensorflow-addons https://www.tensorflow.org/addons/api_docs/python/tfa/layers/GroupNormalization
"""
def __init__(
self,
groups: int = 32,
axis: int = -1,
epsilon: float = 1e-3,
center: bool = True,
scale: bool = True,
beta_initializer: tf.keras.initializers.Initializer = "zeros",
gamma_initializer: tf.keras.initializers.Initializer = "ones",
beta_regularizer: tf.keras.regularizers.Regularizer = None,
gamma_regularizer: tf.keras.regularizers.Regularizer = None,
beta_constraint: tf.keras.constraints.Constraint = None,
gamma_constraint: tf.keras.constraints.Constraint = None,
**kwargs,
):
super().__init__(**kwargs)
self.supports_masking = True
self.groups = groups
self.axis = axis
self.epsilon = epsilon
self.center = center
self.scale = scale
self.beta_initializer = tf.keras.initializers.get(beta_initializer)
self.gamma_initializer = tf.keras.initializers.get(gamma_initializer)
self.beta_regularizer = tf.keras.regularizers.get(beta_regularizer)
self.gamma_regularizer = tf.keras.regularizers.get(gamma_regularizer)
self.beta_constraint = tf.keras.constraints.get(beta_constraint)
self.gamma_constraint = tf.keras.constraints.get(gamma_constraint)
self._check_axis()
def build(self, input_shape):
self._check_if_input_shape_is_none(input_shape)
self._set_number_of_groups_for_instance_norm(input_shape)
self._check_size_of_dimensions(input_shape)
self._create_input_spec(input_shape)
self._add_gamma_weight(input_shape)
self._add_beta_weight(input_shape)
self.built = True
super().build(input_shape)
def call(self, inputs):
input_shape = tf.keras.backend.int_shape(inputs)
tensor_input_shape = tf.shape(inputs)
reshaped_inputs, group_shape = self._reshape_into_groups(inputs, input_shape, tensor_input_shape)
normalized_inputs = self._apply_normalization(reshaped_inputs, input_shape)
is_instance_norm = (input_shape[self.axis] // self.groups) == 1
if not is_instance_norm:
outputs = tf.reshape(normalized_inputs, tensor_input_shape)
else:
outputs = normalized_inputs
return outputs
def get_config(self):
config = {
"groups": self.groups,
"axis": self.axis,
"epsilon": self.epsilon,
"center": self.center,
"scale": self.scale,
"beta_initializer": tf.keras.initializers.serialize(self.beta_initializer),
"gamma_initializer": tf.keras.initializers.serialize(self.gamma_initializer),
"beta_regularizer": tf.keras.regularizers.serialize(self.beta_regularizer),
"gamma_regularizer": tf.keras.regularizers.serialize(self.gamma_regularizer),
"beta_constraint": tf.keras.constraints.serialize(self.beta_constraint),
"gamma_constraint": tf.keras.constraints.serialize(self.gamma_constraint),
}
base_config = super().get_config()
return {**base_config, **config}
def compute_output_shape(self, input_shape):
return input_shape
def _reshape_into_groups(self, inputs, input_shape, tensor_input_shape):
group_shape = [tensor_input_shape[i] for i in range(len(input_shape))]
is_instance_norm = (input_shape[self.axis] // self.groups) == 1
if not is_instance_norm:
group_shape[self.axis] = input_shape[self.axis] // self.groups
group_shape.insert(self.axis, self.groups)
group_shape = tf.stack(group_shape)
reshaped_inputs = tf.reshape(inputs, group_shape)
return reshaped_inputs, group_shape
else:
return inputs, group_shape
def _apply_normalization(self, reshaped_inputs, input_shape):
group_shape = tf.keras.backend.int_shape(reshaped_inputs)
group_reduction_axes = list(range(1, len(group_shape)))
is_instance_norm = (input_shape[self.axis] // self.groups) == 1
if not is_instance_norm:
axis = -2 if self.axis == -1 else self.axis - 1
else:
axis = -1 if self.axis == -1 else self.axis - 1
group_reduction_axes.pop(axis)
mean, variance = tf.nn.moments(reshaped_inputs, group_reduction_axes, keepdims=True)
gamma, beta = self._get_reshaped_weights(input_shape)
normalized_inputs = tf.nn.batch_normalization(
reshaped_inputs,
mean=mean,
variance=variance,
scale=gamma,
offset=beta,
variance_epsilon=self.epsilon,
)
return normalized_inputs
def _get_reshaped_weights(self, input_shape):
broadcast_shape = self._create_broadcast_shape(input_shape)
gamma = None
beta = None
if self.scale:
gamma = tf.reshape(self.gamma, broadcast_shape)
if self.center:
beta = tf.reshape(self.beta, broadcast_shape)
return gamma, beta
def _check_if_input_shape_is_none(self, input_shape):
dim = input_shape[self.axis]
if dim is None:
raise ValueError(
"Axis "
+ str(self.axis)
+ " of input tensor should have a defined dimension but the layer received an input with shape "
+ str(input_shape)
+ "."
)
def _set_number_of_groups_for_instance_norm(self, input_shape):
dim = input_shape[self.axis]
if self.groups == -1:
self.groups = dim
def _check_size_of_dimensions(self, input_shape):
dim = input_shape[self.axis]
if dim < self.groups:
raise ValueError(
"Number of groups ("
+ str(self.groups)
+ ") cannot be more than the number of channels ("
+ str(dim)
+ ")."
)
if dim % self.groups != 0:
raise ValueError(
"Number of groups ("
+ str(self.groups)
+ ") must be a multiple of the number of channels ("
+ str(dim)
+ ")."
)
def _check_axis(self):
if self.axis == 0:
raise ValueError(
"You are trying to normalize your batch axis. Do you want to use tf.layer.batch_normalization instead"
)
def _create_input_spec(self, input_shape):
dim = input_shape[self.axis]
self.input_spec = tf.keras.layers.InputSpec(ndim=len(input_shape), axes={self.axis: dim})
def _add_gamma_weight(self, input_shape):
dim = input_shape[self.axis]
shape = (dim,)
if self.scale:
self.gamma = self.add_weight(
shape=shape,
name="gamma",
initializer=self.gamma_initializer,
regularizer=self.gamma_regularizer,
constraint=self.gamma_constraint,
)
else:
self.gamma = None
def _add_beta_weight(self, input_shape):
dim = input_shape[self.axis]
shape = (dim,)
if self.center:
self.beta = self.add_weight(
shape=shape,
name="beta",
initializer=self.beta_initializer,
regularizer=self.beta_regularizer,
constraint=self.beta_constraint,
)
else:
self.beta = None
def _create_broadcast_shape(self, input_shape):
broadcast_shape = [1] * len(input_shape)
is_instance_norm = (input_shape[self.axis] // self.groups) == 1
if not is_instance_norm:
broadcast_shape[self.axis] = input_shape[self.axis] // self.groups
broadcast_shape.insert(self.axis, self.groups)
else:
broadcast_shape[self.axis] = self.groups
return broadcast_shape
# Copied from transformers.models.wav2vec2.modeling_tf_wav2vec2.TFWav2Vec2WeightNormConv1D with Wav2Vec2->Hubert
class TFHubertWeightNormConv1D(tf.keras.layers.Conv1D):
"""Adapted from https://www.tensorflow.org/probability/api_docs/python/tfp/layers/weight_norm/WeightNorm"""
def __init__(self, filters, kernel_size, groups, explicit_padding, **kwargs):
super().__init__(
filters=filters,
kernel_size=kernel_size,
groups=groups,
padding="valid",
use_bias=True,
bias_initializer="he_normal",
**kwargs,
)
self.explicit_padding = explicit_padding
self.filter_axis = 2
self.kernel_norm_axes = tf.constant([0, 1])
def _init_norm(self):
"""Set the norm of the weight vector."""
kernel_norm = tf.sqrt(tf.reduce_sum(tf.square(self.weight_v), axis=self.kernel_norm_axes))
self.weight_g.assign(kernel_norm[:, tf.newaxis, tf.newaxis])
def _normalize_kernel(self):
"""Generate normalized weights."""
kernel = tf.nn.l2_normalize(self.weight_v, axis=self.kernel_norm_axes) * tf.transpose(self.weight_g)
self.kernel = tf.transpose(kernel)
def build(self, input_shape):
if not self.built:
super().build(input_shape)
self.kernel = tf.Variable(tf.transpose(self.kernel), name="weight_v", trainable=True)
self.weight_v = self.kernel
self.weight_g = self.add_weight(
name="weight_g",
shape=(int(self.weight_v.shape[self.filter_axis]), 1, 1),
initializer="ones",
dtype=self.weight_v.dtype,
trainable=True,
)
self._init_norm()
self.bias = self.add_weight(name="bias", shape=(self.filters,), initializer="zeros", trainable=True)
def call(self, inputs):
# TODO Matt: Assigning to attributes in call() is deeply sinful in TensorFlow, as it should be idempotent.
# This whole layer should be replaced by a layer that doesn't inherit from Conv1D, but instead calls
# a functional 1d convolution with normalized weights that it generates (but does not store!)
self._normalize_kernel()
padded_inputs = tf.pad(inputs, ((0, 0), (self.explicit_padding, self.explicit_padding), (0, 0)))
output = super().call(padded_inputs)
return output
# Copied from transformers.models.wav2vec2.modeling_tf_wav2vec2.TFWav2Vec2NoLayerNormConvLayer with Wav2Vec2->Hubert
class TFHubertNoLayerNormConvLayer(tf.keras.layers.Layer):
def __init__(self, config: HubertConfig, layer_id: int = 0, **kwargs: Any) -> None:
super().__init__(**kwargs)
self.in_conv_dim = config.conv_dim[layer_id] if layer_id > 0 else 1
self.out_conv_dim = config.conv_dim[layer_id]
self.conv = tf.keras.layers.Conv1D(
filters=self.out_conv_dim,
kernel_size=config.conv_kernel[layer_id],
strides=config.conv_stride[layer_id],
use_bias=config.conv_bias,
name="conv",
)
self.activation = get_tf_activation(config.feat_extract_activation)
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.conv(hidden_states)
hidden_states = self.activation(hidden_states)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "conv", None) is not None:
with tf.name_scope(self.conv.name):
self.conv.build([None, None, self.in_conv_dim])
# Copied from transformers.models.wav2vec2.modeling_tf_wav2vec2.TFWav2Vec2LayerNormConvLayer with Wav2Vec2->Hubert
class TFHubertLayerNormConvLayer(tf.keras.layers.Layer):
def __init__(self, config: HubertConfig, layer_id: int = 0, **kwargs: Any) -> None:
super().__init__(**kwargs)
self.in_conv_dim = config.conv_dim[layer_id] if layer_id > 0 else 1
self.out_conv_dim = config.conv_dim[layer_id]
self.conv = tf.keras.layers.Conv1D(
filters=self.out_conv_dim,
kernel_size=config.conv_kernel[layer_id],
strides=config.conv_stride[layer_id],
use_bias=config.conv_bias,
name="conv",
)
self.layer_norm = tf.keras.layers.LayerNormalization(name="layer_norm", epsilon=config.layer_norm_eps)
self.activation = get_tf_activation(config.feat_extract_activation)
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.conv(hidden_states)
hidden_states = self.layer_norm(hidden_states)
hidden_states = self.activation(hidden_states)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "conv", None) is not None:
with tf.name_scope(self.conv.name):
self.conv.build([None, None, self.in_conv_dim])
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.out_conv_dim])
# Copied from transformers.models.wav2vec2.modeling_tf_wav2vec2.TFWav2Vec2GroupNormConvLayer with Wav2Vec2->Hubert
class TFHubertGroupNormConvLayer(tf.keras.layers.Layer):
def __init__(self, config: HubertConfig, layer_id: int = 0, **kwargs: Any) -> None:
super().__init__(**kwargs)
self.in_conv_dim = config.conv_dim[layer_id] if layer_id > 0 else 1
self.out_conv_dim = config.conv_dim[layer_id]
self.conv = tf.keras.layers.Conv1D(
filters=self.out_conv_dim,
kernel_size=config.conv_kernel[layer_id],
strides=config.conv_stride[layer_id],
use_bias=config.conv_bias,
name="conv",
)
self.activation = get_tf_activation(config.feat_extract_activation)
self.layer_norm = TFHubertGroupNorm(groups=self.out_conv_dim, epsilon=config.layer_norm_eps, name="layer_norm")
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.conv(hidden_states)
hidden_states = self.layer_norm(hidden_states)
hidden_states = self.activation(hidden_states)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "conv", None) is not None:
with tf.name_scope(self.conv.name):
self.conv.build([None, None, self.in_conv_dim])
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.out_conv_dim])
# Copied from transformers.models.wav2vec2.modeling_tf_wav2vec2.TFWav2Vec2PositionalConvEmbedding with Wav2Vec2->Hubert
class TFHubertPositionalConvEmbedding(tf.keras.layers.Layer):
def __init__(self, config: HubertConfig, **kwargs: Any) -> None:
super().__init__(**kwargs)
self.conv = TFHubertWeightNormConv1D(
filters=config.hidden_size,
kernel_size=config.num_conv_pos_embeddings,
groups=config.num_conv_pos_embedding_groups,
explicit_padding=config.num_conv_pos_embeddings // 2,
name="conv",
)
self.padding = TFHubertSamePadLayer(config.num_conv_pos_embeddings)
self.activation = get_tf_activation(config.feat_extract_activation)
self.config = config
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.conv(hidden_states)
hidden_states = self.padding(hidden_states)
hidden_states = self.activation(hidden_states)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "conv", None) is not None:
with tf.name_scope(self.conv.name):
self.conv.build([None, None, self.config.hidden_size])
# Copied from transformers.models.wav2vec2.modeling_tf_wav2vec2.TFWav2Vec2SamePadLayer with Wav2Vec2->Hubert
class TFHubertSamePadLayer(tf.keras.layers.Layer):
def __init__(self, num_conv_pos_embeddings, **kwargs):
super().__init__(**kwargs)
self.num_pad_remove = 1 if num_conv_pos_embeddings % 2 == 0 else 0
def call(self, hidden_states):
if self.num_pad_remove > 0:
hidden_states = hidden_states[:, : -self.num_pad_remove, :]
return hidden_states
class TFHubertFeatureEncoder(tf.keras.layers.Layer):
def __init__(self, config: HubertConfig, **kwargs: Any) -> None:
super().__init__(**kwargs)
if config.feat_extract_norm == "group":
conv_layers = [TFHubertGroupNormConvLayer(config, layer_id=0, name=f"conv_layers.{0}")] + [
TFHubertNoLayerNormConvLayer(config, layer_id=i + 1, name=f"conv_layers.{i+1}")
for i in range(config.num_feat_extract_layers - 1)
]
elif config.feat_extract_norm == "layer":
conv_layers = [
TFHubertLayerNormConvLayer(config, layer_id=i, name=f"conv_layers.{i}")
for i in range(config.num_feat_extract_layers)
]
else:
raise ValueError(
f"`config.feat_extract_norm` is {config.feat_extract_norm}, but has to be one of ['group', 'layer']"
)
self.conv_layers = conv_layers
def call(self, input_values):
hidden_states = tf.expand_dims(input_values, -1)
for conv_layer in self.conv_layers:
hidden_states = conv_layer(hidden_states)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
for conv_layer in self.conv_layers:
with tf.name_scope(conv_layer.name):
conv_layer.build(None)
class TFHubertFeatureExtractor(TFHubertFeatureEncoder):
def __init__(self, config, **kwargs):
super().__init__(config, **kwargs)
warnings.warn(
f"The class `{self.__class__.__name__}` has been depreciated "
"and will be removed in Transformers v5. "
f"Use `{self.__class__.__bases__[0].__name__}` instead.",
FutureWarning,
)
class TFHubertFeatureProjection(tf.keras.layers.Layer):
def __init__(self, config: HubertConfig, **kwargs):
super().__init__(**kwargs)
self.layer_norm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm")
self.projection = tf.keras.layers.Dense(
units=config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
bias_initializer="zeros",
name="projection",
)
self.dropout = tf.keras.layers.Dropout(rate=config.feat_proj_dropout)
self.config = config
def call(self, hidden_states: tf.Tensor, training: bool = False) -> tf.Tensor:
hidden_states = self.layer_norm(hidden_states)
hidden_states = self.projection(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.config.conv_dim[-1]])
if getattr(self, "projection", None) is not None:
with tf.name_scope(self.projection.name):
self.projection.build([None, None, self.config.conv_dim[-1]])
# Copied from transformers.models.bart.modeling_tf_bart.TFBartAttention with TFBart->TFHubert
class TFHubertAttention(tf.keras.layers.Layer):
"""Multi-headed attention from "Attention Is All You Need"""
def __init__(
self,
embed_dim: int,
num_heads: int,
dropout: float = 0.0,
is_decoder: bool = False,
bias: bool = True,
**kwargs,
):
super().__init__(**kwargs)
self.embed_dim = embed_dim
self.num_heads = num_heads
self.dropout = tf.keras.layers.Dropout(dropout)
self.head_dim = embed_dim // num_heads
if (self.head_dim * num_heads) != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_heads (got `embed_dim`: {self.embed_dim}"
f" and `num_heads`: {num_heads})."
)
self.scaling = self.head_dim**-0.5
self.is_decoder = is_decoder
self.k_proj = tf.keras.layers.Dense(embed_dim, use_bias=bias, name="k_proj")
self.q_proj = tf.keras.layers.Dense(embed_dim, use_bias=bias, name="q_proj")
self.v_proj = tf.keras.layers.Dense(embed_dim, use_bias=bias, name="v_proj")
self.out_proj = tf.keras.layers.Dense(embed_dim, use_bias=bias, name="out_proj")
def _shape(self, tensor: tf.Tensor, seq_len: int, bsz: int):
return tf.transpose(tf.reshape(tensor, (bsz, seq_len, self.num_heads, self.head_dim)), (0, 2, 1, 3))
def call(
self,
hidden_states: tf.Tensor,
key_value_states: tf.Tensor | None = None,
past_key_value: Tuple[Tuple[tf.Tensor]] | None = None,
attention_mask: tf.Tensor | None = None,
layer_head_mask: tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Tuple[tf.Tensor, tf.Tensor | None]:
"""Input shape: Batch x Time x Channel"""
# if key_value_states are provided this layer is used as a cross-attention layer
# for the decoder
is_cross_attention = key_value_states is not None
bsz, tgt_len, embed_dim = shape_list(hidden_states)
# get query proj
query_states = self.q_proj(hidden_states) * self.scaling
# get key, value proj
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_states = past_key_value[0]
value_states = past_key_value[1]
elif is_cross_attention:
# cross_attentions
key_states = self._shape(self.k_proj(key_value_states), -1, bsz)
value_states = self._shape(self.v_proj(key_value_states), -1, bsz)
elif past_key_value is not None:
# reuse k, v, self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
key_states = tf.concat([past_key_value[0], key_states], axis=2)
value_states = tf.concat([past_key_value[1], value_states], axis=2)
else:
# self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
if self.is_decoder:
# if cross_attention save Tuple(tf.Tensor, tf.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(tf.Tensor, tf.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_states, value_states)
proj_shape = (bsz * self.num_heads, -1, self.head_dim)
query_states = tf.reshape(self._shape(query_states, tgt_len, bsz), proj_shape)
key_states = tf.reshape(key_states, proj_shape)
value_states = tf.reshape(value_states, proj_shape)
src_len = shape_list(key_states)[1]
attn_weights = tf.matmul(query_states, key_states, transpose_b=True)
tf.debugging.assert_equal(
shape_list(attn_weights),
[bsz * self.num_heads, tgt_len, src_len],
message=(
f"Attention weights should be of size {(bsz * self.num_heads, tgt_len, src_len)}, but is"
f" {shape_list(attn_weights)}"
),
)
if attention_mask is not None:
tf.debugging.assert_equal(
shape_list(attention_mask),
[bsz, 1, tgt_len, src_len],
message=(
f"Attention mask should be of size {(bsz, 1, tgt_len, src_len)}, but is"
f" {shape_list(attention_mask)}"
),
)
attention_mask = tf.cast(attention_mask, dtype=attn_weights.dtype)
attn_weights = tf.reshape(attn_weights, (bsz, self.num_heads, tgt_len, src_len)) + attention_mask
attn_weights = tf.reshape(attn_weights, (bsz * self.num_heads, tgt_len, src_len))
attn_weights = stable_softmax(attn_weights, axis=-1)
if layer_head_mask is not None:
tf.debugging.assert_equal(
shape_list(layer_head_mask),
[self.num_heads],
message=(
f"Head mask for a single layer should be of size {(self.num_heads)}, but is"
f" {shape_list(layer_head_mask)}"
),
)
attn_weights = tf.reshape(layer_head_mask, (1, -1, 1, 1)) * tf.reshape(
attn_weights, (bsz, self.num_heads, tgt_len, src_len)
)
attn_weights = tf.reshape(attn_weights, (bsz * self.num_heads, tgt_len, src_len))
attn_probs = self.dropout(attn_weights, training=training)
attn_output = tf.matmul(attn_probs, value_states)
tf.debugging.assert_equal(
shape_list(attn_output),
[bsz * self.num_heads, tgt_len, self.head_dim],
message=(
f"`attn_output` should be of size {(bsz, self.num_heads, tgt_len, self.head_dim)}, but is"
f" {shape_list(attn_output)}"
),
)
attn_output = tf.transpose(
tf.reshape(attn_output, (bsz, self.num_heads, tgt_len, self.head_dim)), (0, 2, 1, 3)
)
attn_output = tf.reshape(attn_output, (bsz, tgt_len, embed_dim))
attn_output = self.out_proj(attn_output)
attn_weights: tf.Tensor = tf.reshape(attn_weights, (bsz, self.num_heads, tgt_len, src_len))
return attn_output, attn_weights, past_key_value
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "k_proj", None) is not None:
with tf.name_scope(self.k_proj.name):
self.k_proj.build([None, None, self.embed_dim])
if getattr(self, "q_proj", None) is not None:
with tf.name_scope(self.q_proj.name):
self.q_proj.build([None, None, self.embed_dim])
if getattr(self, "v_proj", None) is not None:
with tf.name_scope(self.v_proj.name):
self.v_proj.build([None, None, self.embed_dim])
if getattr(self, "out_proj", None) is not None:
with tf.name_scope(self.out_proj.name):
self.out_proj.build([None, None, self.embed_dim])
# Copied from transformers.models.wav2vec2.modeling_tf_wav2vec2.TFWav2Vec2FeedForward with Wav2Vec2->Hubert
class TFHubertFeedForward(tf.keras.layers.Layer):
def __init__(self, config: HubertConfig, **kwargs):
super().__init__(**kwargs)
self.intermediate_dropout = tf.keras.layers.Dropout(config.activation_dropout)
self.intermediate_dense = tf.keras.layers.Dense(
units=config.intermediate_size,
kernel_initializer=get_initializer(config.initializer_range),
bias_initializer="zeros",
name="intermediate_dense",
)
self.intermediate_act_fn = get_tf_activation(config.hidden_act)
self.output_dense = tf.keras.layers.Dense(
units=config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
bias_initializer="zeros",
name="output_dense",
)
self.output_dropout = tf.keras.layers.Dropout(config.hidden_dropout)
self.config = config
def call(self, hidden_states: tf.Tensor, training: bool = False) -> tf.Tensor:
hidden_states = self.intermediate_dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
hidden_states = self.intermediate_dropout(hidden_states, training=training)
hidden_states = self.output_dense(hidden_states)
hidden_states = self.output_dropout(hidden_states, training=training)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "intermediate_dense", None) is not None:
with tf.name_scope(self.intermediate_dense.name):
self.intermediate_dense.build([None, None, self.config.hidden_size])
if getattr(self, "output_dense", None) is not None:
with tf.name_scope(self.output_dense.name):
self.output_dense.build([None, None, self.config.intermediate_size])
# Copied from transformers.models.wav2vec2.modeling_tf_wav2vec2.TFWav2Vec2EncoderLayer with Wav2Vec2->Hubert
class TFHubertEncoderLayer(tf.keras.layers.Layer):
def __init__(self, config: HubertConfig, **kwargs):
super().__init__(**kwargs)
self.attention = TFHubertAttention(
embed_dim=config.hidden_size,
num_heads=config.num_attention_heads,
dropout=config.attention_dropout,
is_decoder=False,
name="attention",
)
self.dropout = tf.keras.layers.Dropout(config.hidden_dropout)
self.layer_norm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm")
self.feed_forward = TFHubertFeedForward(config, name="feed_forward")
self.final_layer_norm = tf.keras.layers.LayerNormalization(
epsilon=config.layer_norm_eps, name="final_layer_norm"
)
self.config = config
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor | None = None,
output_attentions: Optional[bool] = False,
training: bool = False,
) -> Tuple[tf.Tensor]:
attn_residual = hidden_states
hidden_states, attn_weights, _ = self.attention(
hidden_states, attention_mask=attention_mask, training=training
)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = attn_residual + hidden_states
hidden_states = self.layer_norm(hidden_states)
hidden_states = hidden_states + self.feed_forward(hidden_states)
hidden_states = self.final_layer_norm(hidden_states)
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_weights,)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "attention", None) is not None:
with tf.name_scope(self.attention.name):
self.attention.build(None)
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.config.hidden_size])
if getattr(self, "feed_forward", None) is not None:
with tf.name_scope(self.feed_forward.name):
self.feed_forward.build(None)
if getattr(self, "final_layer_norm", None) is not None:
with tf.name_scope(self.final_layer_norm.name):
self.final_layer_norm.build([None, None, self.config.hidden_size])
# Copied from transformers.models.wav2vec2.modeling_tf_wav2vec2.TFWav2Vec2EncoderLayerStableLayerNorm with Wav2Vec2->Hubert
class TFHubertEncoderLayerStableLayerNorm(tf.keras.layers.Layer):
def __init__(self, config: HubertConfig, **kwargs):
super().__init__(**kwargs)
self.attention = TFHubertAttention(
embed_dim=config.hidden_size,
num_heads=config.num_attention_heads,
dropout=config.attention_dropout,
is_decoder=False,
name="attention",
)
self.dropout = tf.keras.layers.Dropout(config.hidden_dropout)
self.layer_norm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm")
self.feed_forward = TFHubertFeedForward(config, name="feed_forward")
self.final_layer_norm = tf.keras.layers.LayerNormalization(
epsilon=config.layer_norm_eps, name="final_layer_norm"
)
self.config = config
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor | None = None,
output_attentions: Optional[bool] = False,
training: bool = False,
) -> Tuple[tf.Tensor]:
attn_residual = hidden_states
hidden_states = self.layer_norm(hidden_states)
hidden_states, attn_weights, _ = self.attention(
hidden_states, attention_mask=attention_mask, training=training
)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = attn_residual + hidden_states
hidden_states = hidden_states + self.feed_forward(self.final_layer_norm(hidden_states))
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_weights,)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "attention", None) is not None:
with tf.name_scope(self.attention.name):
self.attention.build(None)
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.config.hidden_size])
if getattr(self, "feed_forward", None) is not None:
with tf.name_scope(self.feed_forward.name):
self.feed_forward.build(None)
if getattr(self, "final_layer_norm", None) is not None:
with tf.name_scope(self.final_layer_norm.name):
self.final_layer_norm.build([None, None, self.config.hidden_size])
# Copied from transformers.models.wav2vec2.modeling_tf_wav2vec2.TFWav2Vec2Encoder with Wav2Vec2->Hubert
class TFHubertEncoder(tf.keras.layers.Layer):
def __init__(self, config: HubertConfig, **kwargs):
super().__init__(**kwargs)
self.config = config
self.pos_conv_embed = TFHubertPositionalConvEmbedding(config, name="pos_conv_embed")
self.layer_norm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm")
self.dropout = tf.keras.layers.Dropout(config.hidden_dropout)
self.layer = [TFHubertEncoderLayer(config, name=f"layers.{i}") for i in range(config.num_hidden_layers)]
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor | None = None,
output_attentions: Optional[bool] = False,
output_hidden_states: Optional[bool] = False,
return_dict: Optional[bool] = True,
training: Optional[bool] = False,
) -> Union[TFBaseModelOutput, Tuple[tf.Tensor]]:
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
if attention_mask is not None:
hidden_states = hidden_states * tf.expand_dims(attention_mask, -1)
attention_mask = _expand_mask(attention_mask)
else:
attention_mask = None
position_embeddings = self.pos_conv_embed(hidden_states)
hidden_states = hidden_states + position_embeddings
hidden_states = self.layer_norm(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
dropout_probability = np.random.uniform(0, 1)
if training and (dropout_probability < self.config.layerdrop): # skip the layer
continue
layer_outputs = layer_module(
hidden_states=hidden_states,
attention_mask=attention_mask,
output_attentions=output_attentions,
training=training,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
# Add last layer
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_self_attentions] if v is not None)
return TFBaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "pos_conv_embed", None) is not None:
with tf.name_scope(self.pos_conv_embed.name):
self.pos_conv_embed.build(None)
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.config.hidden_size])
if getattr(self, "layer", None) is not None:
for layer in self.layer:
with tf.name_scope(layer.name):
layer.build(None)
# Copied from transformers.models.wav2vec2.modeling_tf_wav2vec2.TFWav2Vec2EncoderStableLayerNorm with Wav2Vec2->Hubert
class TFHubertEncoderStableLayerNorm(tf.keras.layers.Layer):
def __init__(self, config: HubertConfig, **kwargs):
super().__init__(**kwargs)
self.config = config
self.pos_conv_embed = TFHubertPositionalConvEmbedding(config, name="pos_conv_embed")
self.layer_norm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm")
self.dropout = tf.keras.layers.Dropout(config.hidden_dropout)
self.layer = [
TFHubertEncoderLayerStableLayerNorm(config, name=f"layers.{i}") for i in range(config.num_hidden_layers)
]
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor | None = None,
output_attentions: Optional[bool] = False,
output_hidden_states: Optional[bool] = False,
return_dict: Optional[bool] = True,
training: Optional[bool] = False,
) -> Union[TFBaseModelOutput, Tuple[tf.Tensor]]:
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
if attention_mask is not None:
hidden_states = hidden_states * tf.expand_dims(attention_mask, -1)
attention_mask = _expand_mask(attention_mask)
else:
attention_mask = None
position_embeddings = self.pos_conv_embed(hidden_states)
hidden_states = hidden_states + position_embeddings
hidden_states = self.dropout(hidden_states, training=training)
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
dropout_probability = np.random.uniform(0, 1)
if training and (dropout_probability < self.config.layerdrop): # skip the layer
continue
layer_outputs = layer_module(
hidden_states=hidden_states,
attention_mask=attention_mask,
output_attentions=output_attentions,
training=training,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
hidden_states = self.layer_norm(hidden_states)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_self_attentions] if v is not None)
return TFBaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "pos_conv_embed", None) is not None:
with tf.name_scope(self.pos_conv_embed.name):
self.pos_conv_embed.build(None)
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.config.hidden_size])
if getattr(self, "layer", None) is not None:
for layer in self.layer:
with tf.name_scope(layer.name):
layer.build(None)
@keras_serializable
class TFHubertMainLayer(tf.keras.layers.Layer):
config_class = HubertConfig
def __init__(self, config: HubertConfig, **kwargs):
super().__init__(**kwargs)
self.config = config
self.feature_extractor = TFHubertFeatureEncoder(config, name="feature_extractor")
self.feature_projection = TFHubertFeatureProjection(config, name="feature_projection")
if config.do_stable_layer_norm:
self.encoder = TFHubertEncoderStableLayerNorm(config, name="encoder")
else:
self.encoder = TFHubertEncoder(config, name="encoder")
def build(self, input_shape=None):
self.masked_spec_embed = self.add_weight(
shape=(self.config.hidden_size,), initializer="uniform", trainable=True, name="masked_spec_embed"
)
if self.built:
return
self.built = True
if getattr(self, "feature_extractor", None) is not None:
with tf.name_scope(self.feature_extractor.name):
self.feature_extractor.build(None)
if getattr(self, "feature_projection", None) is not None:
with tf.name_scope(self.feature_projection.name):
self.feature_projection.build(None)
if getattr(self, "encoder", None) is not None:
with tf.name_scope(self.encoder.name):
self.encoder.build(None)
def _get_feat_extract_output_lengths(self, input_lengths: tf.Tensor):
"""
Computes the output length of the convolutional layers
"""
def _conv_out_length(input_length, kernel_size, stride):
# 1D convolutional layer output length formula taken
# from https://pytorch.org/docs/stable/generated/torch.nn.Conv1d.html
return (input_length - kernel_size) // stride + 1
for kernel_size, stride in zip(self.config.conv_kernel, self.config.conv_stride):
input_lengths = _conv_out_length(input_lengths, kernel_size, stride)
return input_lengths
def _mask_hidden_states(self, hidden_states: tf.Tensor, mask_time_indices: tf.Tensor | None = None):
"""
Masks extracted features along time axis and/or along feature axis according to
[SpecAugment](https://arxiv.org/abs/1904.08779).
"""
batch_size, sequence_length, hidden_size = shape_list(hidden_states)
# `config.apply_spec_augment` can set masking to False
if not getattr(self.config, "apply_spec_augment", True):
return hidden_states
if mask_time_indices is not None:
# apply SpecAugment along time axis with given mask_time_indices
hidden_states = tf.where(
tf.cast(mask_time_indices[:, :, tf.newaxis], tf.bool),
self.masked_spec_embed[tf.newaxis, tf.newaxis, :],
hidden_states,
)
elif self.config.mask_time_prob > 0:
# generate indices & apply SpecAugment along time axis
mask_time_indices = _compute_mask_indices(
(batch_size, sequence_length),
mask_prob=self.config.mask_time_prob,
mask_length=self.config.mask_time_length,
min_masks=2,
)
hidden_states = tf.where(
tf.cast(mask_time_indices[:, :, tf.newaxis], tf.bool),
self.masked_spec_embed[tf.newaxis, tf.newaxis, :],
hidden_states,
)
# apply SpecAugment along feature axis
if self.config.mask_feature_prob > 0:
mask_feature_indices = _compute_mask_indices(
(batch_size, hidden_size),
mask_prob=self.config.mask_feature_prob,
mask_length=self.config.mask_feature_length,
)
hidden_states = tf.where(mask_feature_indices[:, tf.newaxis, :], hidden_states, 0)
return hidden_states
@unpack_inputs
def call(
self,
input_values: tf.Tensor,
attention_mask: tf.Tensor | None = None,
token_type_ids: tf.Tensor | None = None,
position_ids: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
inputs_embeds: tf.Tensor | None = None,
output_attentions: tf.Tensor | None = None,
output_hidden_states: tf.Tensor | None = None,
return_dict: Optional[bool] = None,
training: bool = False,
**kwargs: Any,
):
hidden_states = self.feature_extractor(tf.cast(input_values, tf.float32), training=training)
if attention_mask is not None:
# compute real output lengths according to convolution formula
output_lengths = self._get_feat_extract_output_lengths(tf.reduce_sum(attention_mask, -1))
attention_mask = tf.sequence_mask(
output_lengths, maxlen=shape_list(hidden_states)[1], dtype=hidden_states.dtype
)
hidden_states = self.feature_projection(hidden_states, training=training)
mask_time_indices = kwargs.get("mask_time_indices", None)
if training:
hidden_states = self._mask_hidden_states(hidden_states, mask_time_indices=mask_time_indices)
encoder_outputs = self.encoder(
hidden_states,
attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
hidden_states = encoder_outputs[0]
if not return_dict:
return (hidden_states,) + encoder_outputs[1:]
return TFBaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
class TFHubertPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = HubertConfig
base_model_prefix = "hubert"
main_input_name = "input_values"
@property
def input_signature(self):
return {
"input_values": tf.TensorSpec((None, 16000), tf.float32, name="input_values"),
"attention_mask": tf.TensorSpec((None, None), tf.int32, name="attention_mask"),
"token_type_ids": tf.TensorSpec((None, None), tf.int32, name="token_type_ids"),
}
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
logger.warning(
f"\n{self.__class__.__name__} has backpropagation operations that are NOT supported on CPU. If you wish "
"to train/fine-tune this model, you need a GPU or a TPU"
)
HUBERT_START_DOCSTRING = r"""
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a [tf.keras.Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model) subclass. Use it
as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to general usage and
behavior.
<Tip>
TensorFlow models and layers in `transformers` accept two formats as input:
- having all inputs as keyword arguments (like PyTorch models), or
- having all inputs as a list, tuple or dict in the first positional argument.
The reason the second format is supported is that Keras methods prefer this format when passing inputs to models
and layers. Because of this support, when using methods like `model.fit()` things should "just work" for you - just
pass your inputs and labels in any format that `model.fit()` supports! If, however, you want to use the second
format outside of Keras methods like `fit()` and `predict()`, such as when creating your own layers or models with
the Keras `Functional` API, there are three possibilities you can use to gather all the input Tensors in the first
positional argument:
- a single Tensor with `input_values` only and nothing else: `model(input_values)`
- a list of varying length with one or several input Tensors IN THE ORDER given in the docstring:
`model([input_values, attention_mask])` or `model([input_values, attention_mask, token_type_ids])`
- a dictionary with one or several input Tensors associated to the input names given in the docstring:
`model({"input_values": input_values, "token_type_ids": token_type_ids})`
Note that when creating models and layers with
[subclassing](https://keras.io/guides/making_new_layers_and_models_via_subclassing/) then you don't need to worry
about any of this, as you can just pass inputs like you would to any other Python function!
</Tip>
Args:
config ([`HubertConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
HUBERT_INPUTS_DOCSTRING = r"""
Args:
input_values (`np.ndarray`, `tf.Tensor`, `List[tf.Tensor]` `Dict[str, tf.Tensor]` or `Dict[str, np.ndarray]` and each example must have the shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.__call__`] and
[`PreTrainedTokenizer.encode`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`np.ndarray` or `tf.Tensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
token_type_ids (`np.ndarray` or `tf.Tensor` of shape `({0})`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`np.ndarray` or `tf.Tensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`np.ndarray` or `tf.Tensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`np.ndarray` or `tf.Tensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_values` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert `input_values` indices into associated vectors
than the model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail. This argument can be used only in eager mode, in graph mode the value in the
config will be used instead.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail. This argument can be used only in eager mode, in graph mode the value in the config will be
used instead.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple. This argument can be used in
eager mode, in graph mode the value will always be set to True.
training (`bool`, *optional*, defaults to `False``):
Whether or not to use the model in training mode (some modules like dropout modules have different
behaviors between training and evaluation).
"""
@add_start_docstrings(
"The bare TFHubert Model transformer outputing raw hidden-states without any specific head on top.",
HUBERT_START_DOCSTRING,
)
class TFHubertModel(TFHubertPreTrainedModel):
def __init__(self, config: HubertConfig, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.config = config
self.hubert = TFHubertMainLayer(config, name="hubert")
@add_start_docstrings_to_model_forward(HUBERT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFBaseModelOutput, config_class=_CONFIG_FOR_DOC)
@unpack_inputs
def call(
self,
input_values: tf.Tensor,
attention_mask: tf.Tensor | None = None,
token_type_ids: tf.Tensor | None = None,
position_ids: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
inputs_embeds: tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFBaseModelOutput, Tuple[tf.Tensor]]:
"""
Returns:
Example:
```python
>>> from transformers import AutoProcessor, TFHubertModel
>>> from datasets import load_dataset
>>> import soundfile as sf
>>> processor = AutoProcessor.from_pretrained("facebook/hubert-large-ls960-ft")
>>> model = TFHubertModel.from_pretrained("facebook/hubert-large-ls960-ft")
>>> def map_to_array(batch):
... speech, _ = sf.read(batch["file"])
... batch["speech"] = speech
... return batch
>>> ds = load_dataset("hf-internal-testing/librispeech_asr_dummy", "clean", split="validation")
>>> ds = ds.map(map_to_array)
>>> input_values = processor(ds["speech"][0], return_tensors="tf").input_values # Batch size 1
>>> hidden_states = model(input_values).last_hidden_state
```"""
output_hidden_states = output_hidden_states if output_hidden_states else self.config.output_hidden_states
output_attentions = output_attentions if output_attentions else self.config.output_attentions
return_dict = return_dict if return_dict else self.config.return_dict
outputs = self.hubert(
input_values=input_values,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "hubert", None) is not None:
with tf.name_scope(self.hubert.name):
self.hubert.build(None)
@add_start_docstrings(
"""TFHubert Model with a `language modeling` head on top for Connectionist Temporal Classification (CTC).""",
HUBERT_START_DOCSTRING,
)
class TFHubertForCTC(TFHubertPreTrainedModel):
def __init__(self, config: HubertConfig, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.hubert = TFHubertMainLayer(config, name="hubert")
self.dropout = tf.keras.layers.Dropout(config.final_dropout)
self.lm_head = tf.keras.layers.Dense(config.vocab_size, name="lm_head")
self.output_hidden_size = (
config.output_hidden_size if hasattr(config, "add_adapter") and config.add_adapter else config.hidden_size
)
def freeze_feature_extractor(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameters will
not be updated during training.
"""
warnings.warn(
"The method `freeze_feature_extractor` is deprecated and will be removed in Transformers v5. "
"Please use the equivalent `freeze_feature_encoder` method instead.",
FutureWarning,
)
self.freeze_feature_encoder()
def freeze_feature_encoder(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameter will
not be updated during training.
"""
self.hubert.feature_extractor.trainable = False
@add_start_docstrings_to_model_forward(HUBERT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFCausalLMOutput, config_class=_CONFIG_FOR_DOC)
@unpack_inputs
def call(
self,
input_values: tf.Tensor,
attention_mask: tf.Tensor | None = None,
token_type_ids: tf.Tensor | None = None,
position_ids: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
inputs_embeds: tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
labels: tf.Tensor | None = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[TFCausalLMOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` or `np.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_values` docstring) Tokens with indices set to `-100` are ignored (masked),
the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
Returns:
Example:
```python
>>> import tensorflow as tf
>>> from transformers import AutoProcessor, TFHubertForCTC
>>> from datasets import load_dataset
>>> import soundfile as sf
>>> processor = AutoProcessor.from_pretrained("facebook/hubert-large-ls960-ft")
>>> model = TFHubertForCTC.from_pretrained("facebook/hubert-large-ls960-ft")
>>> def map_to_array(batch):
... speech, _ = sf.read(batch["file"])
... batch["speech"] = speech
... return batch
>>> ds = load_dataset("hf-internal-testing/librispeech_asr_dummy", "clean", split="validation")
>>> ds = ds.map(map_to_array)
>>> input_values = processor(ds["speech"][0], return_tensors="tf").input_values # Batch size 1
>>> logits = model(input_values).logits
>>> predicted_ids = tf.argmax(logits, axis=-1)
>>> transcription = processor.decode(predicted_ids[0])
>>> # compute loss
>>> target_transcription = "A MAN SAID TO THE UNIVERSE SIR I EXIST"
>>> # Pass the transcription as text to encode labels
>>> labels = processor(text=transcription, return_tensors="tf").input_values
>>> loss = model(input_values, labels=labels).loss
```"""
outputs = self.hubert(
input_values=input_values,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
hidden_states = outputs[0]
hidden_states = self.dropout(hidden_states, training=training)
logits = self.lm_head(hidden_states)
if labels is not None:
if tf.reduce_max(labels) >= self.config.vocab_size:
raise ValueError(f"Label values must be <= vocab_size: {self.config.vocab_size}")
attention_mask = (
attention_mask if attention_mask is not None else tf.ones_like(input_values, dtype=tf.float32)
)
input_lengths = self.hubert._get_feat_extract_output_lengths(tf.reduce_sum(attention_mask, axis=-1))
# assuming that padded tokens are filled with -100
# when not being attended to
labels_mask = tf.cast(labels >= 0, tf.int32)
target_lengths = tf.reduce_sum(labels_mask, axis=-1)
loss = tf.nn.ctc_loss(
logits=logits,
labels=labels,
logit_length=input_lengths,
label_length=target_lengths,
blank_index=self.config.pad_token_id,
logits_time_major=False,
)
if self.config.ctc_loss_reduction == "sum":
loss = tf.reduce_sum(loss)
loss = tf.reshape(loss, (1,))
if self.config.ctc_loss_reduction == "mean":
loss = tf.reduce_mean(loss)
loss = tf.reshape(loss, (1,))
else:
loss = None
if not return_dict:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFCausalLMOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "hubert", None) is not None:
with tf.name_scope(self.hubert.name):
self.hubert.build(None)
if getattr(self, "lm_head", None) is not None:
with tf.name_scope(self.lm_head.name):
self.lm_head.build([None, None, self.output_hidden_size])
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/hubert/convert_distilhubert_original_s3prl_checkpoint_to_pytorch.py | # coding=utf-8
# Copyright 2021 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert Hubert checkpoint."""
import argparse
import torch
from s3prl.hub import distilhubert
from transformers import HubertConfig, HubertModel, Wav2Vec2FeatureExtractor, logging
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
MAPPING = {
"post_extract_proj": "feature_projection.projection",
"encoder.pos_conv.0": "encoder.pos_conv_embed.conv",
"self_attn.k_proj": "encoder.layers.*.attention.k_proj",
"self_attn.v_proj": "encoder.layers.*.attention.v_proj",
"self_attn.q_proj": "encoder.layers.*.attention.q_proj",
"self_attn.out_proj": "encoder.layers.*.attention.out_proj",
"self_attn_layer_norm": "encoder.layers.*.layer_norm",
"fc1": "encoder.layers.*.feed_forward.intermediate_dense",
"fc2": "encoder.layers.*.feed_forward.output_dense",
"final_layer_norm": "encoder.layers.*.final_layer_norm",
"encoder.layer_norm": "encoder.layer_norm",
"mask_emb": "masked_spec_embed",
}
def set_recursively(hf_pointer, key, value, full_name, weight_type):
for attribute in key.split("."):
hf_pointer = getattr(hf_pointer, attribute)
if weight_type is not None:
hf_shape = getattr(hf_pointer, weight_type).shape
else:
hf_shape = hf_pointer.shape
assert hf_shape == value.shape, (
f"Shape of hf {key + '.' + weight_type if weight_type is not None else ''} is {hf_shape}, but should be"
f" {value.shape} for {full_name}"
)
if weight_type == "weight":
hf_pointer.weight.data = value
elif weight_type == "weight_g":
hf_pointer.weight_g.data = value
elif weight_type == "weight_v":
hf_pointer.weight_v.data = value
elif weight_type == "bias":
hf_pointer.bias.data = value
else:
hf_pointer.data = value
logger.info(f"{key + '.' + weight_type if weight_type is not None else ''} was initialized from {full_name}.")
def recursively_load_weights(fairseq_model, hf_model):
unused_weights = []
fairseq_dict = fairseq_model.state_dict()
feature_extractor = hf_model.feature_extractor
for name, value in fairseq_dict.items():
is_used = False
if "conv_layers" in name:
load_conv_layer(
name,
value,
feature_extractor,
unused_weights,
hf_model.config.feat_extract_norm == "group",
)
is_used = True
else:
for key, mapped_key in MAPPING.items():
mapped_key = mapped_key
if key in name:
is_used = True
if "*" in mapped_key:
layer_index = name.split(key)[0].split(".")[-2]
mapped_key = mapped_key.replace("*", layer_index)
if "weight_g" in name:
weight_type = "weight_g"
elif "weight_v" in name:
weight_type = "weight_v"
elif "weight" in name:
weight_type = "weight"
elif "bias" in name:
weight_type = "bias"
else:
weight_type = None
set_recursively(hf_model, mapped_key, value, name, weight_type)
continue
if not is_used:
unused_weights.append(name)
logger.warning(f"Unused weights: {unused_weights}")
def load_conv_layer(full_name, value, feature_extractor, unused_weights, use_group_norm):
name = full_name.split("conv_layers.")[-1]
items = name.split(".")
layer_id = int(items[0])
type_id = int(items[1])
if type_id == 0:
if "bias" in name:
assert value.shape == feature_extractor.conv_layers[layer_id].conv.bias.data.shape, (
f"{full_name} has size {value.shape}, but"
f" {feature_extractor.conv_layers[layer_id].conv.bias.data.shape} was found."
)
feature_extractor.conv_layers[layer_id].conv.bias.data = value
logger.info(f"Feat extract conv layer {layer_id} was initialized from {full_name}.")
elif "weight" in name:
assert value.shape == feature_extractor.conv_layers[layer_id].conv.weight.data.shape, (
f"{full_name} has size {value.shape}, but"
f" {feature_extractor.conv_layers[layer_id].conv.weight.data.shape} was found."
)
feature_extractor.conv_layers[layer_id].conv.weight.data = value
logger.info(f"Feat extract conv layer {layer_id} was initialized from {full_name}.")
elif (type_id == 2 and not use_group_norm) or (type_id == 2 and layer_id == 0 and use_group_norm):
if "bias" in name:
assert value.shape == feature_extractor.conv_layers[layer_id].layer_norm.bias.data.shape, (
f"{full_name} has size {value.shape}, but {feature_extractor[layer_id].layer_norm.bias.data.shape} was"
" found."
)
feature_extractor.conv_layers[layer_id].layer_norm.bias.data = value
logger.info(f"Feat extract layer norm weight of layer {layer_id} was initialized from {full_name}.")
elif "weight" in name:
assert value.shape == feature_extractor.conv_layers[layer_id].layer_norm.weight.data.shape, (
f"{full_name} has size {value.shape}, but"
f" {feature_extractor[layer_id].layer_norm.weight.data.shape} was found."
)
feature_extractor.conv_layers[layer_id].layer_norm.weight.data = value
logger.info(f"Feat extract layer norm weight of layer {layer_id} was initialized from {full_name}.")
else:
unused_weights.append(full_name)
def convert_config(model):
config = HubertConfig()
fs_config = model.config
config.activation_dropout = fs_config.activation_dropout
config.apply_spec_augment = False
config.attention_dropout = fs_config.attention_dropout
config.conv_bias = False
conv_layers = eval(fs_config.extractor_conv_feature_layers)
config.conv_dim = [x[0] for x in conv_layers]
config.conv_kernel = [x[1] for x in conv_layers]
config.conv_stride = [x[2] for x in conv_layers]
config.feat_extract_activation = "gelu"
config.feat_extract_norm = "layer" if fs_config.extractor_mode == "layer_norm" else "group"
config.feat_proj_layer_norm = False
config.feat_proj_dropout = 0.0
config.final_dropout = 0.0
config.hidden_act = fs_config.activation_fn
config.hidden_dropout = fs_config.dropout
config.hidden_size = fs_config.encoder_embed_dim
config.initializer_range = 0.02
config.intermediate_size = fs_config.encoder_ffn_embed_dim
config.layer_norm_eps = 1e-5
config.layerdrop = 0.0
config.num_attention_heads = fs_config.encoder_attention_heads
config.num_conv_pos_embedding_groups = fs_config.conv_pos_groups
config.num_conv_pos_embeddings = fs_config.conv_pos
config.num_feat_extract_layers = len(conv_layers)
config.num_hidden_layers = fs_config.encoder_layers
return config
@torch.no_grad()
def convert_hubert_checkpoint(pytorch_dump_folder_path, config_path=None):
"""
Copy/paste/tweak model's weights to transformers design.
"""
model = distilhubert().model.model
if config_path is not None:
config = HubertConfig.from_pretrained(config_path)
else:
config = convert_config(model)
model = model.eval()
feature_extractor = Wav2Vec2FeatureExtractor(
feature_size=1,
sampling_rate=16000,
padding_value=0,
do_normalize=False,
return_attention_mask=False,
)
hf_model = HubertModel(config)
recursively_load_weights(model, hf_model)
feature_extractor.save_pretrained(pytorch_dump_folder_path)
hf_model.save_pretrained(pytorch_dump_folder_path)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument("--pytorch_dump_folder_path", default=None, type=str, help="Path to the output PyTorch model.")
parser.add_argument("--config_path", default=None, type=str, help="Path to hf config.json of model to convert")
args = parser.parse_args()
convert_hubert_checkpoint(args.pytorch_dump_folder_path, args.config_path)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/hubert/__init__.py | # Copyright 2021 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_tf_available, is_torch_available
_import_structure = {"configuration_hubert": ["HUBERT_PRETRAINED_CONFIG_ARCHIVE_MAP", "HubertConfig"]}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_hubert"] = [
"HUBERT_PRETRAINED_MODEL_ARCHIVE_LIST",
"HubertForCTC",
"HubertForSequenceClassification",
"HubertModel",
"HubertPreTrainedModel",
]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_hubert"] = [
"TF_HUBERT_PRETRAINED_MODEL_ARCHIVE_LIST",
"TFHubertForCTC",
"TFHubertModel",
"TFHubertPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_hubert import HUBERT_PRETRAINED_CONFIG_ARCHIVE_MAP, HubertConfig
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_hubert import (
HUBERT_PRETRAINED_MODEL_ARCHIVE_LIST,
HubertForCTC,
HubertForSequenceClassification,
HubertModel,
HubertPreTrainedModel,
)
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_hubert import (
TF_HUBERT_PRETRAINED_MODEL_ARCHIVE_LIST,
TFHubertForCTC,
TFHubertModel,
TFHubertPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/hubert/configuration_hubert.py | # coding=utf-8
# Copyright 2021 The Fairseq Authors and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Hubert model configuration"""
import functools
import operator
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
HUBERT_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"facebook/hubert-base-ls960": "https://huggingface.co/facebook/hubert-base-ls960/resolve/main/config.json",
# See all Hubert models at https://huggingface.co/models?filter=hubert
}
class HubertConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`HubertModel`]. It is used to instantiate an
Hubert model according to the specified arguments, defining the model architecture. Instantiating a configuration
with the defaults will yield a similar configuration to that of the Hubert
[facebook/hubert-base-ls960](https://huggingface.co/facebook/hubert-base-ls960) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 32):
Vocabulary size of the Hubert model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`HubertModel`]. Vocabulary size of the model. Defines the different
tokens that can be represented by the *inputs_ids* passed to the forward method of [`HubertModel`].
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (i.e., feed-forward) layer in the Transformer encoder.
hidden_act (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"selu"` and `"gelu_new"` are supported.
hidden_dropout(`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
activation_dropout (`float`, *optional*, defaults to 0.1):
The dropout ratio for activations inside the fully connected layer.
attention_dropout(`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention probabilities.
final_dropout (`float`, *optional*, defaults to 0.1):
The dropout probabilitiy for the final projection layer of [`Wav2Vec2ForCTC`].
layerdrop (`float`, *optional*, defaults to 0.1):
The LayerDrop probability. See the [LayerDrop paper](see https://arxiv.org/abs/1909.11556) for more
details.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
feat_extract_norm (`str`, *optional*, defaults to `"group"`):
The norm to be applied to 1D convolutional layers in feature encoder. One of `"group"` for group
normalization of only the first 1D convolutional layer or `"layer"` for layer normalization of all 1D
convolutional layers.
feat_proj_dropout (`float`, *optional*, defaults to 0.0):
The dropout probability for output of the feature encoder.
feat_proj_layer_norm (`bool`, *optional*, defaults to `True`):
Whether to apply LayerNorm to the output of the feature encoder.
feat_extract_activation (`str, `optional`, defaults to `"gelu"`):
The non-linear activation function (function or string) in the 1D convolutional layers of the feature
extractor. If string, `"gelu"`, `"relu"`, `"selu"` and `"gelu_new"` are supported.
conv_dim (`Tuple[int]`, *optional*, defaults to `(512, 512, 512, 512, 512, 512, 512)`):
A tuple of integers defining the number of input and output channels of each 1D convolutional layer in the
feature encoder. The length of *conv_dim* defines the number of 1D convolutional layers.
conv_stride (`Tuple[int]`, *optional*, defaults to `(5, 2, 2, 2, 2, 2, 2)`):
A tuple of integers defining the stride of each 1D convolutional layer in the feature encoder. The length
of *conv_stride* defines the number of convolutional layers and has to match the length of *conv_dim*.
conv_kernel (`Tuple[int]`, *optional*, defaults to `(10, 3, 3, 3, 3, 3, 3)`):
A tuple of integers defining the kernel size of each 1D convolutional layer in the feature encoder. The
length of *conv_kernel* defines the number of convolutional layers and has to match the length of
*conv_dim*.
conv_bias (`bool`, *optional*, defaults to `False`):
Whether the 1D convolutional layers have a bias.
num_conv_pos_embeddings (`int`, *optional*, defaults to 128):
Number of convolutional positional embeddings. Defines the kernel size of 1D convolutional positional
embeddings layer.
num_conv_pos_embedding_groups (`int`, *optional*, defaults to 16):
Number of groups of 1D convolutional positional embeddings layer.
do_stable_layer_norm (`bool`, *optional*, defaults to `False`):
Whether do apply *stable* layer norm architecture of the Transformer encoder. `do_stable_layer_norm is
True` corresponds to applying layer norm before the attention layer, whereas `do_stable_layer_norm is
False` corresponds to applying layer norm after the attention layer.
apply_spec_augment (`bool`, *optional*, defaults to `True`):
Whether to apply *SpecAugment* data augmentation to the outputs of the feature encoder. For reference see
[SpecAugment: A Simple Data Augmentation Method for Automatic Speech
Recognition](https://arxiv.org/abs/1904.08779).
mask_time_prob (`float`, *optional*, defaults to 0.05):
Percentage (between 0 and 1) of all feature vectors along the time axis which will be masked. The masking
procecure generates ''mask_time_prob*len(time_axis)/mask_time_length'' independent masks over the axis. If
reasoning from the propability of each feature vector to be chosen as the start of the vector span to be
masked, *mask_time_prob* should be `prob_vector_start*mask_time_length`. Note that overlap may decrease the
actual percentage of masked vectors. This is only relevant if `apply_spec_augment is True`.
mask_time_length (`int`, *optional*, defaults to 10):
Length of vector span along the time axis.
mask_time_min_masks (`int`, *optional*, defaults to 2),:
The minimum number of masks of length `mask_feature_length` generated along the time axis, each time step,
irrespectively of `mask_feature_prob`. Only relevant if ''mask_time_prob*len(time_axis)/mask_time_length <
mask_time_min_masks''
mask_feature_prob (`float`, *optional*, defaults to 0.0):
Percentage (between 0 and 1) of all feature vectors along the feature axis which will be masked. The
masking procecure generates ''mask_feature_prob*len(feature_axis)/mask_time_length'' independent masks over
the axis. If reasoning from the propability of each feature vector to be chosen as the start of the vector
span to be masked, *mask_feature_prob* should be `prob_vector_start*mask_feature_length`. Note that overlap
may decrease the actual percentage of masked vectors. This is only relevant if `apply_spec_augment is
True`.
mask_feature_length (`int`, *optional*, defaults to 10):
Length of vector span along the feature axis.
mask_feature_min_masks (`int`, *optional*, defaults to 0),:
The minimum number of masks of length `mask_feature_length` generated along the feature axis, each time
step, irrespectively of `mask_feature_prob`. Only relevant if
''mask_feature_prob*len(feature_axis)/mask_feature_length < mask_feature_min_masks''
ctc_loss_reduction (`str`, *optional*, defaults to `"sum"`):
Specifies the reduction to apply to the output of `torch.nn.CTCLoss`. Only relevant when training an
instance of [`HubertForCTC`].
ctc_zero_infinity (`bool`, *optional*, defaults to `False`):
Whether to zero infinite losses and the associated gradients of `torch.nn.CTCLoss`. Infinite losses mainly
occur when the inputs are too short to be aligned to the targets. Only relevant when training an instance
of [`HubertForCTC`].
use_weighted_layer_sum (`bool`, *optional*, defaults to `False`):
Whether to use a weighted average of layer outputs with learned weights. Only relevant when using an
instance of [`HubertForSequenceClassification`].
classifier_proj_size (`int`, *optional*, defaults to 256):
Dimensionality of the projection before token mean-pooling for classification.
Example:
```python
>>> from transformers import HubertModel, HubertConfig
>>> # Initializing a Hubert facebook/hubert-base-ls960 style configuration
>>> configuration = HubertConfig()
>>> # Initializing a model from the facebook/hubert-base-ls960 style configuration
>>> model = HubertModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "hubert"
def __init__(
self,
vocab_size=32,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
intermediate_size=3072,
hidden_act="gelu",
hidden_dropout=0.1,
activation_dropout=0.1,
attention_dropout=0.1,
feat_proj_layer_norm=True,
feat_proj_dropout=0.0,
final_dropout=0.1,
layerdrop=0.1,
initializer_range=0.02,
layer_norm_eps=1e-5,
feat_extract_norm="group",
feat_extract_activation="gelu",
conv_dim=(512, 512, 512, 512, 512, 512, 512),
conv_stride=(5, 2, 2, 2, 2, 2, 2),
conv_kernel=(10, 3, 3, 3, 3, 2, 2),
conv_bias=False,
num_conv_pos_embeddings=128,
num_conv_pos_embedding_groups=16,
do_stable_layer_norm=False,
apply_spec_augment=True,
mask_time_prob=0.05,
mask_time_length=10,
mask_time_min_masks=2,
mask_feature_prob=0.0,
mask_feature_length=10,
mask_feature_min_masks=0,
ctc_loss_reduction="sum",
ctc_zero_infinity=False,
use_weighted_layer_sum=False,
classifier_proj_size=256,
pad_token_id=0,
bos_token_id=1,
eos_token_id=2,
**kwargs,
):
super().__init__(**kwargs, pad_token_id=pad_token_id, bos_token_id=bos_token_id, eos_token_id=eos_token_id)
self.hidden_size = hidden_size
self.feat_extract_norm = feat_extract_norm
self.feat_extract_activation = feat_extract_activation
self.conv_dim = list(conv_dim)
self.conv_stride = list(conv_stride)
self.conv_kernel = list(conv_kernel)
self.conv_bias = conv_bias
self.num_conv_pos_embeddings = num_conv_pos_embeddings
self.num_conv_pos_embedding_groups = num_conv_pos_embedding_groups
self.num_feat_extract_layers = len(self.conv_dim)
self.num_hidden_layers = num_hidden_layers
self.intermediate_size = intermediate_size
self.hidden_act = hidden_act
self.num_attention_heads = num_attention_heads
self.hidden_dropout = hidden_dropout
self.attention_dropout = attention_dropout
self.activation_dropout = activation_dropout
self.feat_proj_layer_norm = feat_proj_layer_norm
self.feat_proj_dropout = feat_proj_dropout
self.final_dropout = final_dropout
self.layerdrop = layerdrop
self.layer_norm_eps = layer_norm_eps
self.initializer_range = initializer_range
self.vocab_size = vocab_size
self.do_stable_layer_norm = do_stable_layer_norm
self.use_weighted_layer_sum = use_weighted_layer_sum
self.classifier_proj_size = classifier_proj_size
if (
(len(self.conv_stride) != self.num_feat_extract_layers)
or (len(self.conv_kernel) != self.num_feat_extract_layers)
or (len(self.conv_dim) != self.num_feat_extract_layers)
):
raise ValueError(
"Configuration for convolutional layers is incorrect. It is required that `len(config.conv_dim)` =="
" `len(config.conv_stride)` == `len(config.conv_kernel)`, but is `len(config.conv_dim) ="
f" {len(self.conv_dim)}`, `len(config.conv_stride) = {len(self.conv_stride)}`,"
f" `len(config.conv_kernel) = {len(self.conv_kernel)}`."
)
# fine-tuning config parameters for SpecAugment: https://arxiv.org/abs/1904.08779
self.apply_spec_augment = apply_spec_augment
self.mask_time_prob = mask_time_prob
self.mask_time_length = mask_time_length
self.mask_time_min_masks = mask_time_min_masks
self.mask_feature_prob = mask_feature_prob
self.mask_feature_length = mask_feature_length
self.mask_feature_min_masks = mask_feature_min_masks
# ctc loss
self.ctc_loss_reduction = ctc_loss_reduction
self.ctc_zero_infinity = ctc_zero_infinity
@property
def inputs_to_logits_ratio(self):
return functools.reduce(operator.mul, self.conv_stride, 1)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/hubert/convert_hubert_original_pytorch_checkpoint_to_pytorch.py | # coding=utf-8
# Copyright 2021 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert Hubert checkpoint."""
import argparse
import json
import os
import fairseq
import torch
from fairseq.data import Dictionary
from transformers import (
HubertConfig,
HubertForCTC,
HubertModel,
Wav2Vec2CTCTokenizer,
Wav2Vec2FeatureExtractor,
Wav2Vec2Processor,
logging,
)
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
MAPPING = {
"post_extract_proj": "feature_projection.projection",
"encoder.pos_conv.0": "encoder.pos_conv_embed.conv",
"self_attn.k_proj": "encoder.layers.*.attention.k_proj",
"self_attn.v_proj": "encoder.layers.*.attention.v_proj",
"self_attn.q_proj": "encoder.layers.*.attention.q_proj",
"self_attn.out_proj": "encoder.layers.*.attention.out_proj",
"self_attn_layer_norm": "encoder.layers.*.layer_norm",
"fc1": "encoder.layers.*.feed_forward.intermediate_dense",
"fc2": "encoder.layers.*.feed_forward.output_dense",
"final_layer_norm": "encoder.layers.*.final_layer_norm",
"encoder.layer_norm": "encoder.layer_norm",
"w2v_model.layer_norm": "feature_projection.layer_norm",
"w2v_encoder.proj": "lm_head",
"mask_emb": "masked_spec_embed",
}
def set_recursively(hf_pointer, key, value, full_name, weight_type):
for attribute in key.split("."):
hf_pointer = getattr(hf_pointer, attribute)
if weight_type is not None:
hf_shape = getattr(hf_pointer, weight_type).shape
else:
hf_shape = hf_pointer.shape
assert hf_shape == value.shape, (
f"Shape of hf {key + '.' + weight_type if weight_type is not None else ''} is {hf_shape}, but should be"
f" {value.shape} for {full_name}"
)
if weight_type == "weight":
hf_pointer.weight.data = value
elif weight_type == "weight_g":
hf_pointer.weight_g.data = value
elif weight_type == "weight_v":
hf_pointer.weight_v.data = value
elif weight_type == "bias":
hf_pointer.bias.data = value
else:
hf_pointer.data = value
logger.info(f"{key + '.' + weight_type if weight_type is not None else ''} was initialized from {full_name}.")
def recursively_load_weights(fairseq_model, hf_model, is_finetuned):
unused_weights = []
fairseq_dict = fairseq_model.state_dict()
feature_extractor = hf_model.hubert.feature_extractor if is_finetuned else hf_model.feature_extractor
for name, value in fairseq_dict.items():
is_used = False
if "conv_layers" in name:
load_conv_layer(
name,
value,
feature_extractor,
unused_weights,
hf_model.config.feat_extract_norm == "group",
)
is_used = True
else:
for key, mapped_key in MAPPING.items():
mapped_key = "hubert." + mapped_key if (is_finetuned and mapped_key != "lm_head") else mapped_key
if key in name or (key.split("w2v_model.")[-1] == name.split(".")[0] and not is_finetuned):
is_used = True
if "*" in mapped_key:
layer_index = name.split(key)[0].split(".")[-2]
mapped_key = mapped_key.replace("*", layer_index)
if "weight_g" in name:
weight_type = "weight_g"
elif "weight_v" in name:
weight_type = "weight_v"
elif "weight" in name:
weight_type = "weight"
elif "bias" in name:
weight_type = "bias"
else:
weight_type = None
set_recursively(hf_model, mapped_key, value, name, weight_type)
continue
if not is_used:
unused_weights.append(name)
logger.warning(f"Unused weights: {unused_weights}")
def load_conv_layer(full_name, value, feature_extractor, unused_weights, use_group_norm):
name = full_name.split("conv_layers.")[-1]
items = name.split(".")
layer_id = int(items[0])
type_id = int(items[1])
if type_id == 0:
if "bias" in name:
assert value.shape == feature_extractor.conv_layers[layer_id].conv.bias.data.shape, (
f"{full_name} has size {value.shape}, but"
f" {feature_extractor.conv_layers[layer_id].conv.bias.data.shape} was found."
)
feature_extractor.conv_layers[layer_id].conv.bias.data = value
logger.info(f"Feat extract conv layer {layer_id} was initialized from {full_name}.")
elif "weight" in name:
assert value.shape == feature_extractor.conv_layers[layer_id].conv.weight.data.shape, (
f"{full_name} has size {value.shape}, but"
f" {feature_extractor.conv_layers[layer_id].conv.weight.data.shape} was found."
)
feature_extractor.conv_layers[layer_id].conv.weight.data = value
logger.info(f"Feat extract conv layer {layer_id} was initialized from {full_name}.")
elif (type_id == 2 and not use_group_norm) or (type_id == 2 and layer_id == 0 and use_group_norm):
if "bias" in name:
assert value.shape == feature_extractor.conv_layers[layer_id].layer_norm.bias.data.shape, (
f"{full_name} has size {value.shape}, but {feature_extractor[layer_id].layer_norm.bias.data.shape} was"
" found."
)
feature_extractor.conv_layers[layer_id].layer_norm.bias.data = value
logger.info(f"Feat extract layer norm weight of layer {layer_id} was initialized from {full_name}.")
elif "weight" in name:
assert value.shape == feature_extractor.conv_layers[layer_id].layer_norm.weight.data.shape, (
f"{full_name} has size {value.shape}, but"
f" {feature_extractor[layer_id].layer_norm.weight.data.shape} was found."
)
feature_extractor.conv_layers[layer_id].layer_norm.weight.data = value
logger.info(f"Feat extract layer norm weight of layer {layer_id} was initialized from {full_name}.")
else:
unused_weights.append(full_name)
@torch.no_grad()
def convert_hubert_checkpoint(
checkpoint_path, pytorch_dump_folder_path, config_path=None, dict_path=None, is_finetuned=True
):
"""
Copy/paste/tweak model's weights to transformers design.
"""
if config_path is not None:
config = HubertConfig.from_pretrained(config_path)
else:
config = HubertConfig()
if is_finetuned:
if dict_path:
target_dict = Dictionary.load(dict_path)
# important change bos & pad token id since CTC symbol is <pad> and
# not <s> as in fairseq
config.bos_token_id = target_dict.pad_index
config.pad_token_id = target_dict.bos_index
config.eos_token_id = target_dict.eos_index
config.vocab_size = len(target_dict.symbols)
vocab_path = os.path.join(pytorch_dump_folder_path, "vocab.json")
if not os.path.isdir(pytorch_dump_folder_path):
logger.error("--pytorch_dump_folder_path ({}) should be a directory".format(pytorch_dump_folder_path))
return
os.makedirs(pytorch_dump_folder_path, exist_ok=True)
with open(vocab_path, "w", encoding="utf-8") as vocab_handle:
json.dump(target_dict.indices, vocab_handle)
tokenizer = Wav2Vec2CTCTokenizer(
vocab_path,
unk_token=target_dict.unk_word,
pad_token=target_dict.pad_word,
bos_token=target_dict.bos_word,
eos_token=target_dict.eos_word,
word_delimiter_token="|",
do_lower_case=False,
)
return_attention_mask = True if config.feat_extract_norm == "layer" else False
feature_extractor = Wav2Vec2FeatureExtractor(
feature_size=1,
sampling_rate=16000,
padding_value=0,
do_normalize=True,
return_attention_mask=return_attention_mask,
)
processor = Wav2Vec2Processor(feature_extractor=feature_extractor, tokenizer=tokenizer)
processor.save_pretrained(pytorch_dump_folder_path)
hf_wav2vec = HubertForCTC(config)
else:
hf_wav2vec = HubertModel(config)
if is_finetuned:
model, _, _ = fairseq.checkpoint_utils.load_model_ensemble_and_task(
[checkpoint_path], arg_overrides={"data": "/".join(dict_path.split("/")[:-1])}
)
else:
model, _, _ = fairseq.checkpoint_utils.load_model_ensemble_and_task([checkpoint_path])
model = model[0].eval()
recursively_load_weights(model, hf_wav2vec, is_finetuned)
hf_wav2vec.save_pretrained(pytorch_dump_folder_path)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument("--pytorch_dump_folder_path", default=None, type=str, help="Path to the output PyTorch model.")
parser.add_argument("--checkpoint_path", default=None, type=str, help="Path to fairseq checkpoint")
parser.add_argument("--dict_path", default=None, type=str, help="Path to dict of fine-tuned model")
parser.add_argument("--config_path", default=None, type=str, help="Path to hf config.json of model to convert")
parser.add_argument(
"--not_finetuned", action="store_true", help="Whether the model to convert is a fine-tuned model or not"
)
args = parser.parse_args()
convert_hubert_checkpoint(
args.checkpoint_path, args.pytorch_dump_folder_path, args.config_path, args.dict_path, not args.not_finetuned
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/hubert/modeling_hubert.py | # coding=utf-8
# Copyright 2021 The Fairseq Authors and the HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch Hubert model."""
import warnings
from typing import Optional, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import CrossEntropyLoss
from ...activations import ACT2FN
from ...integrations.deepspeed import is_deepspeed_zero3_enabled
from ...modeling_outputs import BaseModelOutput, CausalLMOutput, SequenceClassifierOutput
from ...modeling_utils import PreTrainedModel
from ...utils import (
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_hubert import HubertConfig
logger = logging.get_logger(__name__)
_HIDDEN_STATES_START_POSITION = 1
# General docstring
_CONFIG_FOR_DOC = "HubertConfig"
# Base docstring
_CHECKPOINT_FOR_DOC = "facebook/hubert-large-ls960-ft"
_EXPECTED_OUTPUT_SHAPE = [1, 292, 768]
# CTC docstring
_CTC_EXPECTED_OUTPUT = "'MISTER QUILTER IS THE APOSTLE OF THE MIDDLE CLASSES AND WE ARE GLAD TO WELCOME HIS GOSPEL'"
_CTC_EXPECTED_LOSS = 22.68
# Audio class docstring
_SEQ_CLASS_CHECKPOINT = "superb/hubert-base-superb-ks"
_SEQ_CLASS_EXPECTED_OUTPUT = "'_unknown_'"
_SEQ_CLASS_EXPECTED_LOSS = 8.53
HUBERT_PRETRAINED_MODEL_ARCHIVE_LIST = [
"facebook/hubert-base-ls960",
# See all Hubert models at https://huggingface.co/models?filter=hubert
]
# Copied from transformers.models.wav2vec2.modeling_wav2vec2._compute_mask_indices
def _compute_mask_indices(
shape: Tuple[int, int],
mask_prob: float,
mask_length: int,
attention_mask: Optional[torch.LongTensor] = None,
min_masks: int = 0,
) -> np.ndarray:
"""
Computes random mask spans for a given shape. Used to implement [SpecAugment: A Simple Data Augmentation Method for
ASR](https://arxiv.org/abs/1904.08779). Note that this method is not optimized to run on TPU and should be run on
CPU as part of the preprocessing during training.
Args:
shape: The shape for which to compute masks. This should be of a tuple of size 2 where
the first element is the batch size and the second element is the length of the axis to span.
mask_prob: The percentage of the whole axis (between 0 and 1) which will be masked. The number of
independently generated mask spans of length `mask_length` is computed by
`mask_prob*shape[1]/mask_length`. Note that due to overlaps, `mask_prob` is an upper bound and the
actual percentage will be smaller.
mask_length: size of the mask
min_masks: minimum number of masked spans
attention_mask: A (right-padded) attention mask which independently shortens the feature axis of
each batch dimension.
"""
batch_size, sequence_length = shape
if mask_length < 1:
raise ValueError("`mask_length` has to be bigger than 0.")
if mask_length > sequence_length:
raise ValueError(
f"`mask_length` has to be smaller than `sequence_length`, but got `mask_length`: {mask_length}"
f" and `sequence_length`: {sequence_length}`"
)
# epsilon is used for probabilistic rounding
epsilon = np.random.rand(1).item()
def compute_num_masked_span(input_length):
"""Given input length, compute how many spans should be masked"""
num_masked_span = int(mask_prob * input_length / mask_length + epsilon)
num_masked_span = max(num_masked_span, min_masks)
# make sure num masked span <= sequence_length
if num_masked_span * mask_length > sequence_length:
num_masked_span = sequence_length // mask_length
# make sure num_masked span is also <= input_length - (mask_length - 1)
if input_length - (mask_length - 1) < num_masked_span:
num_masked_span = max(input_length - (mask_length - 1), 0)
return num_masked_span
# compute number of masked spans in batch
input_lengths = (
attention_mask.sum(-1).detach().tolist()
if attention_mask is not None
else [sequence_length for _ in range(batch_size)]
)
# SpecAugment mask to fill
spec_aug_mask = np.zeros((batch_size, sequence_length), dtype=bool)
spec_aug_mask_idxs = []
max_num_masked_span = compute_num_masked_span(sequence_length)
if max_num_masked_span == 0:
return spec_aug_mask
for input_length in input_lengths:
# compute num of masked spans for this input
num_masked_span = compute_num_masked_span(input_length)
# get random indices to mask
spec_aug_mask_idx = np.random.choice(
np.arange(input_length - (mask_length - 1)), num_masked_span, replace=False
)
# pick first sampled index that will serve as a dummy index to pad vector
# to ensure same dimension for all batches due to probabilistic rounding
# Picking first sample just pads those vectors twice.
if len(spec_aug_mask_idx) == 0:
# this case can only happen if `input_length` is strictly smaller then
# `sequence_length` in which case the last token has to be a padding
# token which we can use as a dummy mask id
dummy_mask_idx = sequence_length - 1
else:
dummy_mask_idx = spec_aug_mask_idx[0]
spec_aug_mask_idx = np.concatenate(
[spec_aug_mask_idx, np.ones(max_num_masked_span - num_masked_span, dtype=np.int32) * dummy_mask_idx]
)
spec_aug_mask_idxs.append(spec_aug_mask_idx)
spec_aug_mask_idxs = np.array(spec_aug_mask_idxs)
# expand masked indices to masked spans
spec_aug_mask_idxs = np.broadcast_to(
spec_aug_mask_idxs[:, :, None], (batch_size, max_num_masked_span, mask_length)
)
spec_aug_mask_idxs = spec_aug_mask_idxs.reshape(batch_size, max_num_masked_span * mask_length)
# add offset to the starting indexes so that indexes now create a span
offsets = np.arange(mask_length)[None, None, :]
offsets = np.broadcast_to(offsets, (batch_size, max_num_masked_span, mask_length)).reshape(
batch_size, max_num_masked_span * mask_length
)
spec_aug_mask_idxs = spec_aug_mask_idxs + offsets
# ensure that we cannot have indices larger than sequence_length
if spec_aug_mask_idxs.max() > sequence_length - 1:
spec_aug_mask_idxs[spec_aug_mask_idxs > sequence_length - 1] = sequence_length - 1
# scatter indices to mask
np.put_along_axis(spec_aug_mask, spec_aug_mask_idxs, 1, -1)
return spec_aug_mask
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2NoLayerNormConvLayer with Wav2Vec2->Hubert
class HubertNoLayerNormConvLayer(nn.Module):
def __init__(self, config, layer_id=0):
super().__init__()
self.in_conv_dim = config.conv_dim[layer_id - 1] if layer_id > 0 else 1
self.out_conv_dim = config.conv_dim[layer_id]
self.conv = nn.Conv1d(
self.in_conv_dim,
self.out_conv_dim,
kernel_size=config.conv_kernel[layer_id],
stride=config.conv_stride[layer_id],
bias=config.conv_bias,
)
self.activation = ACT2FN[config.feat_extract_activation]
def forward(self, hidden_states):
hidden_states = self.conv(hidden_states)
hidden_states = self.activation(hidden_states)
return hidden_states
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2LayerNormConvLayer with Wav2Vec2->Hubert
class HubertLayerNormConvLayer(nn.Module):
def __init__(self, config, layer_id=0):
super().__init__()
self.in_conv_dim = config.conv_dim[layer_id - 1] if layer_id > 0 else 1
self.out_conv_dim = config.conv_dim[layer_id]
self.conv = nn.Conv1d(
self.in_conv_dim,
self.out_conv_dim,
kernel_size=config.conv_kernel[layer_id],
stride=config.conv_stride[layer_id],
bias=config.conv_bias,
)
self.layer_norm = nn.LayerNorm(self.out_conv_dim, elementwise_affine=True)
self.activation = ACT2FN[config.feat_extract_activation]
def forward(self, hidden_states):
hidden_states = self.conv(hidden_states)
hidden_states = hidden_states.transpose(-2, -1)
hidden_states = self.layer_norm(hidden_states)
hidden_states = hidden_states.transpose(-2, -1)
hidden_states = self.activation(hidden_states)
return hidden_states
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2GroupNormConvLayer with Wav2Vec2->Hubert
class HubertGroupNormConvLayer(nn.Module):
def __init__(self, config, layer_id=0):
super().__init__()
self.in_conv_dim = config.conv_dim[layer_id - 1] if layer_id > 0 else 1
self.out_conv_dim = config.conv_dim[layer_id]
self.conv = nn.Conv1d(
self.in_conv_dim,
self.out_conv_dim,
kernel_size=config.conv_kernel[layer_id],
stride=config.conv_stride[layer_id],
bias=config.conv_bias,
)
self.activation = ACT2FN[config.feat_extract_activation]
self.layer_norm = nn.GroupNorm(num_groups=self.out_conv_dim, num_channels=self.out_conv_dim, affine=True)
def forward(self, hidden_states):
hidden_states = self.conv(hidden_states)
hidden_states = self.layer_norm(hidden_states)
hidden_states = self.activation(hidden_states)
return hidden_states
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2PositionalConvEmbedding with Wav2Vec2->Hubert
class HubertPositionalConvEmbedding(nn.Module):
def __init__(self, config):
super().__init__()
self.conv = nn.Conv1d(
config.hidden_size,
config.hidden_size,
kernel_size=config.num_conv_pos_embeddings,
padding=config.num_conv_pos_embeddings // 2,
groups=config.num_conv_pos_embedding_groups,
)
weight_norm = nn.utils.weight_norm
if hasattr(nn.utils.parametrizations, "weight_norm"):
weight_norm = nn.utils.parametrizations.weight_norm
if is_deepspeed_zero3_enabled():
import deepspeed
with deepspeed.zero.GatheredParameters(self.conv.weight, modifier_rank=0):
self.conv = weight_norm(self.conv, name="weight", dim=2)
deepspeed.zero.register_external_parameter(self, self.conv.weight_v)
deepspeed.zero.register_external_parameter(self, self.conv.weight_g)
else:
self.conv = weight_norm(self.conv, name="weight", dim=2)
self.padding = HubertSamePadLayer(config.num_conv_pos_embeddings)
self.activation = ACT2FN[config.feat_extract_activation]
def forward(self, hidden_states):
hidden_states = hidden_states.transpose(1, 2)
hidden_states = self.conv(hidden_states)
hidden_states = self.padding(hidden_states)
hidden_states = self.activation(hidden_states)
hidden_states = hidden_states.transpose(1, 2)
return hidden_states
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2SamePadLayer with Wav2Vec2->Hubert
class HubertSamePadLayer(nn.Module):
def __init__(self, num_conv_pos_embeddings):
super().__init__()
self.num_pad_remove = 1 if num_conv_pos_embeddings % 2 == 0 else 0
def forward(self, hidden_states):
if self.num_pad_remove > 0:
hidden_states = hidden_states[:, :, : -self.num_pad_remove]
return hidden_states
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2FeatureEncoder with Wav2Vec2->Hubert
class HubertFeatureEncoder(nn.Module):
"""Construct the features from raw audio waveform"""
def __init__(self, config):
super().__init__()
if config.feat_extract_norm == "group":
conv_layers = [HubertGroupNormConvLayer(config, layer_id=0)] + [
HubertNoLayerNormConvLayer(config, layer_id=i + 1) for i in range(config.num_feat_extract_layers - 1)
]
elif config.feat_extract_norm == "layer":
conv_layers = [HubertLayerNormConvLayer(config, layer_id=i) for i in range(config.num_feat_extract_layers)]
else:
raise ValueError(
f"`config.feat_extract_norm` is {config.feat_extract_norm}, but has to be one of ['group', 'layer']"
)
self.conv_layers = nn.ModuleList(conv_layers)
self.gradient_checkpointing = False
self._requires_grad = True
def _freeze_parameters(self):
for param in self.parameters():
param.requires_grad = False
self._requires_grad = False
def forward(self, input_values):
hidden_states = input_values[:, None]
# make sure hidden_states require grad for gradient_checkpointing
if self._requires_grad and self.training:
hidden_states.requires_grad = True
for conv_layer in self.conv_layers:
if self._requires_grad and self.gradient_checkpointing and self.training:
hidden_states = self._gradient_checkpointing_func(
conv_layer.__call__,
hidden_states,
)
else:
hidden_states = conv_layer(hidden_states)
return hidden_states
class HubertFeatureExtractor(HubertFeatureEncoder):
def __init__(self, config):
super().__init__(config)
warnings.warn(
f"The class `{self.__class__.__name__}` has been depreciated "
"and will be removed in Transformers v5. "
f"Use `{self.__class__.__bases__[0].__name__}` instead.",
FutureWarning,
)
class HubertFeatureProjection(nn.Module):
def __init__(self, config):
super().__init__()
self.feat_proj_layer_norm = config.feat_proj_layer_norm
if self.feat_proj_layer_norm:
self.layer_norm = nn.LayerNorm(config.conv_dim[-1], eps=config.layer_norm_eps)
self.projection = nn.Linear(config.conv_dim[-1], config.hidden_size)
self.dropout = nn.Dropout(config.feat_proj_dropout)
def forward(self, hidden_states):
# non-projected hidden states are needed for quantization
if self.feat_proj_layer_norm:
hidden_states = self.layer_norm(hidden_states)
hidden_states = self.projection(hidden_states)
hidden_states = self.dropout(hidden_states)
return hidden_states
# Copied from transformers.models.bart.modeling_bart.BartAttention with Bart->Hubert
class HubertAttention(nn.Module):
"""Multi-headed attention from 'Attention Is All You Need' paper"""
def __init__(
self,
embed_dim: int,
num_heads: int,
dropout: float = 0.0,
is_decoder: bool = False,
bias: bool = True,
is_causal: bool = False,
config: Optional[HubertConfig] = None,
):
super().__init__()
self.embed_dim = embed_dim
self.num_heads = num_heads
self.dropout = dropout
self.head_dim = embed_dim // num_heads
self.config = config
if (self.head_dim * num_heads) != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_heads (got `embed_dim`: {self.embed_dim}"
f" and `num_heads`: {num_heads})."
)
self.scaling = self.head_dim**-0.5
self.is_decoder = is_decoder
self.is_causal = is_causal
self.k_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.v_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.q_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.out_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
def _shape(self, tensor: torch.Tensor, seq_len: int, bsz: int):
return tensor.view(bsz, seq_len, self.num_heads, self.head_dim).transpose(1, 2).contiguous()
def forward(
self,
hidden_states: torch.Tensor,
key_value_states: Optional[torch.Tensor] = None,
past_key_value: Optional[Tuple[torch.Tensor]] = None,
attention_mask: Optional[torch.Tensor] = None,
layer_head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
"""Input shape: Batch x Time x Channel"""
# if key_value_states are provided this layer is used as a cross-attention layer
# for the decoder
is_cross_attention = key_value_states is not None
bsz, tgt_len, _ = hidden_states.size()
# get query proj
query_states = self.q_proj(hidden_states) * self.scaling
# get key, value proj
# `past_key_value[0].shape[2] == key_value_states.shape[1]`
# is checking that the `sequence_length` of the `past_key_value` is the same as
# the provided `key_value_states` to support prefix tuning
if (
is_cross_attention
and past_key_value is not None
and past_key_value[0].shape[2] == key_value_states.shape[1]
):
# reuse k,v, cross_attentions
key_states = past_key_value[0]
value_states = past_key_value[1]
elif is_cross_attention:
# cross_attentions
key_states = self._shape(self.k_proj(key_value_states), -1, bsz)
value_states = self._shape(self.v_proj(key_value_states), -1, bsz)
elif past_key_value is not None:
# reuse k, v, self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
key_states = torch.cat([past_key_value[0], key_states], dim=2)
value_states = torch.cat([past_key_value[1], value_states], dim=2)
else:
# self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
if self.is_decoder:
# if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_states, value_states)
proj_shape = (bsz * self.num_heads, -1, self.head_dim)
query_states = self._shape(query_states, tgt_len, bsz).view(*proj_shape)
key_states = key_states.reshape(*proj_shape)
value_states = value_states.reshape(*proj_shape)
src_len = key_states.size(1)
attn_weights = torch.bmm(query_states, key_states.transpose(1, 2))
if attn_weights.size() != (bsz * self.num_heads, tgt_len, src_len):
raise ValueError(
f"Attention weights should be of size {(bsz * self.num_heads, tgt_len, src_len)}, but is"
f" {attn_weights.size()}"
)
if attention_mask is not None:
if attention_mask.size() != (bsz, 1, tgt_len, src_len):
raise ValueError(
f"Attention mask should be of size {(bsz, 1, tgt_len, src_len)}, but is {attention_mask.size()}"
)
attn_weights = attn_weights.view(bsz, self.num_heads, tgt_len, src_len) + attention_mask
attn_weights = attn_weights.view(bsz * self.num_heads, tgt_len, src_len)
attn_weights = nn.functional.softmax(attn_weights, dim=-1)
if layer_head_mask is not None:
if layer_head_mask.size() != (self.num_heads,):
raise ValueError(
f"Head mask for a single layer should be of size {(self.num_heads,)}, but is"
f" {layer_head_mask.size()}"
)
attn_weights = layer_head_mask.view(1, -1, 1, 1) * attn_weights.view(bsz, self.num_heads, tgt_len, src_len)
attn_weights = attn_weights.view(bsz * self.num_heads, tgt_len, src_len)
if output_attentions:
# this operation is a bit awkward, but it's required to
# make sure that attn_weights keeps its gradient.
# In order to do so, attn_weights have to be reshaped
# twice and have to be reused in the following
attn_weights_reshaped = attn_weights.view(bsz, self.num_heads, tgt_len, src_len)
attn_weights = attn_weights_reshaped.view(bsz * self.num_heads, tgt_len, src_len)
else:
attn_weights_reshaped = None
attn_probs = nn.functional.dropout(attn_weights, p=self.dropout, training=self.training)
attn_output = torch.bmm(attn_probs, value_states)
if attn_output.size() != (bsz * self.num_heads, tgt_len, self.head_dim):
raise ValueError(
f"`attn_output` should be of size {(bsz * self.num_heads, tgt_len, self.head_dim)}, but is"
f" {attn_output.size()}"
)
attn_output = attn_output.view(bsz, self.num_heads, tgt_len, self.head_dim)
attn_output = attn_output.transpose(1, 2)
# Use the `embed_dim` from the config (stored in the class) rather than `hidden_state` because `attn_output` can be
# partitioned across GPUs when using tensor-parallelism.
attn_output = attn_output.reshape(bsz, tgt_len, self.embed_dim)
attn_output = self.out_proj(attn_output)
return attn_output, attn_weights_reshaped, past_key_value
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2FeedForward with Wav2Vec2->Hubert
class HubertFeedForward(nn.Module):
def __init__(self, config):
super().__init__()
self.intermediate_dropout = nn.Dropout(config.activation_dropout)
self.intermediate_dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
self.output_dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.output_dropout = nn.Dropout(config.hidden_dropout)
def forward(self, hidden_states):
hidden_states = self.intermediate_dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
hidden_states = self.intermediate_dropout(hidden_states)
hidden_states = self.output_dense(hidden_states)
hidden_states = self.output_dropout(hidden_states)
return hidden_states
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2EncoderLayer with Wav2Vec2->Hubert
class HubertEncoderLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.attention = HubertAttention(
embed_dim=config.hidden_size,
num_heads=config.num_attention_heads,
dropout=config.attention_dropout,
is_decoder=False,
)
self.dropout = nn.Dropout(config.hidden_dropout)
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.feed_forward = HubertFeedForward(config)
self.final_layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(self, hidden_states, attention_mask=None, output_attentions=False):
attn_residual = hidden_states
hidden_states, attn_weights, _ = self.attention(
hidden_states, attention_mask=attention_mask, output_attentions=output_attentions
)
hidden_states = self.dropout(hidden_states)
hidden_states = attn_residual + hidden_states
hidden_states = self.layer_norm(hidden_states)
hidden_states = hidden_states + self.feed_forward(hidden_states)
hidden_states = self.final_layer_norm(hidden_states)
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_weights,)
return outputs
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2AttnAdapterLayer with Wav2Vec2->Hubert
class HubertAttnAdapterLayer(nn.Module):
def __init__(self, config):
"""
Implements adapter modules directly with 3D tensor weight as parameters and without using ModuleList to speed
up training throughput.
"""
super().__init__()
self.input_dim = config.adapter_attn_dim
self.hidden_dim = config.hidden_size
self.norm = nn.LayerNorm(self.hidden_dim)
self.linear_1 = nn.Linear(self.hidden_dim, self.input_dim)
self.act_fn = nn.ReLU()
self.linear_2 = nn.Linear(self.input_dim, self.hidden_dim)
def forward(self, hidden_states: torch.FloatTensor):
hidden_states = self.norm(hidden_states)
hidden_states = self.linear_1(hidden_states)
hidden_states = self.act_fn(hidden_states)
hidden_states = self.linear_2(hidden_states)
return hidden_states
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2EncoderLayerStableLayerNorm with Wav2Vec2->Hubert
class HubertEncoderLayerStableLayerNorm(nn.Module):
def __init__(self, config):
super().__init__()
self.attention = HubertAttention(
embed_dim=config.hidden_size,
num_heads=config.num_attention_heads,
dropout=config.attention_dropout,
is_decoder=False,
)
self.dropout = nn.Dropout(config.hidden_dropout)
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.feed_forward = HubertFeedForward(config)
self.final_layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
if getattr(config, "adapter_attn_dim", None) is not None:
self.adapter_layer = HubertAttnAdapterLayer(config)
else:
self.adapter_layer = None
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
):
attn_residual = hidden_states
hidden_states = self.layer_norm(hidden_states)
hidden_states, attn_weights, _ = self.attention(
hidden_states, attention_mask=attention_mask, output_attentions=output_attentions
)
hidden_states = self.dropout(hidden_states)
hidden_states = attn_residual + hidden_states
hidden_states = hidden_states + self.feed_forward(self.final_layer_norm(hidden_states))
if self.adapter_layer is not None:
hidden_states = hidden_states + self.adapter_layer(hidden_states)
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_weights,)
return outputs
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2Encoder with Wav2Vec2->Hubert
class HubertEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.pos_conv_embed = HubertPositionalConvEmbedding(config)
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout)
self.layers = nn.ModuleList([HubertEncoderLayer(config) for _ in range(config.num_hidden_layers)])
self.gradient_checkpointing = False
def forward(
self,
hidden_states: torch.tensor,
attention_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
if attention_mask is not None:
# make sure padded tokens output 0
expand_attention_mask = attention_mask.unsqueeze(-1).repeat(1, 1, hidden_states.shape[2])
hidden_states[~expand_attention_mask] = 0
# extend attention_mask
attention_mask = 1.0 - attention_mask[:, None, None, :].to(dtype=hidden_states.dtype)
attention_mask = attention_mask * torch.finfo(hidden_states.dtype).min
attention_mask = attention_mask.expand(
attention_mask.shape[0], 1, attention_mask.shape[-1], attention_mask.shape[-1]
)
position_embeddings = self.pos_conv_embed(hidden_states)
hidden_states = hidden_states + position_embeddings
hidden_states = self.layer_norm(hidden_states)
hidden_states = self.dropout(hidden_states)
deepspeed_zero3_is_enabled = is_deepspeed_zero3_enabled()
for layer in self.layers:
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
dropout_probability = torch.rand([])
skip_the_layer = True if self.training and (dropout_probability < self.config.layerdrop) else False
if not skip_the_layer or deepspeed_zero3_is_enabled:
# under deepspeed zero3 all gpus must run in sync
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer.__call__,
hidden_states,
attention_mask,
output_attentions,
)
else:
layer_outputs = layer(
hidden_states, attention_mask=attention_mask, output_attentions=output_attentions
)
hidden_states = layer_outputs[0]
if skip_the_layer:
layer_outputs = (None, None)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_self_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2EncoderStableLayerNorm with Wav2Vec2->Hubert
class HubertEncoderStableLayerNorm(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.pos_conv_embed = HubertPositionalConvEmbedding(config)
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout)
self.layers = nn.ModuleList(
[HubertEncoderLayerStableLayerNorm(config) for _ in range(config.num_hidden_layers)]
)
self.gradient_checkpointing = False
def forward(
self,
hidden_states,
attention_mask=None,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
):
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
if attention_mask is not None:
# make sure padded tokens are not attended to
expand_attention_mask = attention_mask.unsqueeze(-1).repeat(1, 1, hidden_states.shape[2])
hidden_states[~expand_attention_mask] = 0
# extend attention_mask
attention_mask = 1.0 - attention_mask[:, None, None, :].to(dtype=hidden_states.dtype)
attention_mask = attention_mask * torch.finfo(hidden_states.dtype).min
attention_mask = attention_mask.expand(
attention_mask.shape[0], 1, attention_mask.shape[-1], attention_mask.shape[-1]
)
position_embeddings = self.pos_conv_embed(hidden_states)
hidden_states = hidden_states + position_embeddings
hidden_states = self.dropout(hidden_states)
deepspeed_zero3_is_enabled = is_deepspeed_zero3_enabled()
for layer in self.layers:
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
dropout_probability = torch.rand([])
skip_the_layer = True if self.training and (dropout_probability < self.config.layerdrop) else False
if not skip_the_layer or deepspeed_zero3_is_enabled:
# under deepspeed zero3 all gpus must run in sync
# XXX: could optimize this like synced_gpus in generate_utils but not sure if it's worth the code complication
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer.__call__,
hidden_states,
attention_mask,
output_attentions,
)
else:
layer_outputs = layer(
hidden_states, attention_mask=attention_mask, output_attentions=output_attentions
)
hidden_states = layer_outputs[0]
if skip_the_layer:
layer_outputs = (None, None)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
hidden_states = self.layer_norm(hidden_states)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_self_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
class HubertPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = HubertConfig
base_model_prefix = "hubert"
main_input_name = "input_values"
supports_gradient_checkpointing = True
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, nn.Linear):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
elif isinstance(module, (nn.LayerNorm, nn.GroupNorm)):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
elif isinstance(module, nn.Conv1d):
if is_deepspeed_zero3_enabled():
import deepspeed
if hasattr(module, "weight_v") and hasattr(module, "weight_g"):
with deepspeed.zero.GatheredParameters([module.weight_v, module.weight_g], modifier_rank=0):
nn.init.kaiming_normal_(module.weight.data)
else:
with deepspeed.zero.GatheredParameters(module.weight, modifier_rank=0):
nn.init.kaiming_normal_(module.weight.data)
else:
nn.init.kaiming_normal_(module.weight.data)
if isinstance(module, (nn.Linear, nn.Conv1d)) and module.bias is not None:
module.bias.data.zero_()
def _get_feat_extract_output_lengths(self, input_lengths: Union[torch.LongTensor, int]):
"""
Computes the output length of the convolutional layers
"""
def _conv_out_length(input_length, kernel_size, stride):
# 1D convolutional layer output length formula taken
# from https://pytorch.org/docs/stable/generated/torch.nn.Conv1d.html
return torch.div(input_length - kernel_size, stride, rounding_mode="floor") + 1
for kernel_size, stride in zip(self.config.conv_kernel, self.config.conv_stride):
input_lengths = _conv_out_length(input_lengths, kernel_size, stride)
return input_lengths
def _get_feature_vector_attention_mask(self, feature_vector_length: int, attention_mask: torch.LongTensor):
output_lengths = self._get_feat_extract_output_lengths(attention_mask.sum(-1)).to(torch.long)
batch_size = attention_mask.shape[0]
attention_mask = torch.zeros(
(batch_size, feature_vector_length), dtype=attention_mask.dtype, device=attention_mask.device
)
# these two operations makes sure that all values before the output lengths idxs are attended to
attention_mask[(torch.arange(attention_mask.shape[0], device=attention_mask.device), output_lengths - 1)] = 1
attention_mask = attention_mask.flip([-1]).cumsum(-1).flip([-1]).bool()
return attention_mask
HUBERT_START_DOCSTRING = r"""
Hubert was proposed in [HuBERT: Self-Supervised Speech Representation Learning by Masked Prediction of Hidden
Units](https://arxiv.org/abs/2106.07447) by Wei-Ning Hsu, Benjamin Bolte, Yao-Hung Hubert Tsai, Kushal Lakhotia,
Ruslan Salakhutdinov, Abdelrahman Mohamed.
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving etc.).
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) sub-class. Use
it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`HubertConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
HUBERT_INPUTS_DOCSTRING = r"""
Args:
input_values (`torch.FloatTensor` of shape `(batch_size, sequence_length)`):
Float values of input raw speech waveform. Values can be obtained by loading a `.flac` or `.wav` audio file
into an array of type `List[float]` or a `numpy.ndarray`, *e.g.* via the soundfile library (`pip install
soundfile`). To prepare the array into `input_values`, the [`AutoProcessor`] should be used for padding and
conversion into a tensor of type `torch.FloatTensor`. See [`Wav2Vec2Processor.__call__`] for details.
attention_mask (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing convolution and attention on padding token indices. Mask values selected in `[0,
1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
<Tip warning={true}>
`attention_mask` should only be passed if the corresponding processor has `config.return_attention_mask ==
True`. For all models whose processor has `config.return_attention_mask == False`, such as
[hubert-base](https://huggingface.co/facebook/hubert-base-ls960), `attention_mask` should **not** be passed
to avoid degraded performance when doing batched inference. For such models `input_values` should simply be
padded with 0 and passed without `attention_mask`. Be aware that these models also yield slightly different
results depending on whether `input_values` is padded or not.
</Tip>
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare Hubert Model transformer outputting raw hidden-states without any specific head on top.",
HUBERT_START_DOCSTRING,
)
class HubertModel(HubertPreTrainedModel):
def __init__(self, config: HubertConfig):
super().__init__(config)
self.config = config
self.feature_extractor = HubertFeatureEncoder(config)
self.feature_projection = HubertFeatureProjection(config)
if config.mask_time_prob > 0.0 or config.mask_feature_prob > 0.0:
self.masked_spec_embed = nn.Parameter(torch.FloatTensor(config.hidden_size).uniform_())
if config.do_stable_layer_norm:
self.encoder = HubertEncoderStableLayerNorm(config)
else:
self.encoder = HubertEncoder(config)
# Initialize weights and apply final processing
self.post_init()
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2Model._mask_hidden_states
def _mask_hidden_states(
self,
hidden_states: torch.FloatTensor,
mask_time_indices: Optional[torch.FloatTensor] = None,
attention_mask: Optional[torch.LongTensor] = None,
):
"""
Masks extracted features along time axis and/or along feature axis according to
[SpecAugment](https://arxiv.org/abs/1904.08779).
"""
# `config.apply_spec_augment` can set masking to False
if not getattr(self.config, "apply_spec_augment", True):
return hidden_states
# generate indices & apply SpecAugment along time axis
batch_size, sequence_length, hidden_size = hidden_states.size()
if mask_time_indices is not None:
# apply SpecAugment along time axis with given mask_time_indices
hidden_states[mask_time_indices] = self.masked_spec_embed.to(hidden_states.dtype)
elif self.config.mask_time_prob > 0 and self.training:
mask_time_indices = _compute_mask_indices(
(batch_size, sequence_length),
mask_prob=self.config.mask_time_prob,
mask_length=self.config.mask_time_length,
attention_mask=attention_mask,
min_masks=self.config.mask_time_min_masks,
)
mask_time_indices = torch.tensor(mask_time_indices, device=hidden_states.device, dtype=torch.bool)
hidden_states[mask_time_indices] = self.masked_spec_embed.to(hidden_states.dtype)
if self.config.mask_feature_prob > 0 and self.training:
# generate indices & apply SpecAugment along feature axis
mask_feature_indices = _compute_mask_indices(
(batch_size, hidden_size),
mask_prob=self.config.mask_feature_prob,
mask_length=self.config.mask_feature_length,
min_masks=self.config.mask_feature_min_masks,
)
mask_feature_indices = torch.tensor(mask_feature_indices, device=hidden_states.device, dtype=torch.bool)
mask_feature_indices = mask_feature_indices[:, None].expand(-1, sequence_length, -1)
hidden_states[mask_feature_indices] = 0
return hidden_states
@add_start_docstrings_to_model_forward(HUBERT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=BaseModelOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_values: Optional[torch.Tensor],
attention_mask: Optional[torch.Tensor] = None,
mask_time_indices: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutput]:
"""
Returns:
Example:
```python
>>> from transformers import AutoProcessor, HubertModel
>>> from datasets import load_dataset
>>> import soundfile as sf
>>> processor = AutoProcessor.from_pretrained("facebook/hubert-large-ls960-ft")
>>> model = HubertModel.from_pretrained("facebook/hubert-large-ls960-ft")
>>> def map_to_array(batch):
... speech, _ = sf.read(batch["file"])
... batch["speech"] = speech
... return batch
>>> ds = load_dataset("hf-internal-testing/librispeech_asr_dummy", "clean", split="validation")
>>> ds = ds.map(map_to_array)
>>> input_values = processor(ds["speech"][0], return_tensors="pt").input_values # Batch size 1
>>> hidden_states = model(input_values).last_hidden_state
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
extract_features = self.feature_extractor(input_values)
extract_features = extract_features.transpose(1, 2)
if attention_mask is not None:
# compute reduced attention_mask corresponding to feature vectors
attention_mask = self._get_feature_vector_attention_mask(extract_features.shape[1], attention_mask)
hidden_states = self.feature_projection(extract_features)
hidden_states = self._mask_hidden_states(hidden_states, mask_time_indices=mask_time_indices)
encoder_outputs = self.encoder(
hidden_states,
attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = encoder_outputs[0]
if not return_dict:
return (hidden_states,) + encoder_outputs[1:]
return BaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
@add_start_docstrings(
"""Hubert Model with a `language modeling` head on top for Connectionist Temporal Classification (CTC).""",
HUBERT_START_DOCSTRING,
)
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2ForCTC with Wav2Vec2->Hubert, wav2vec2->hubert, WAV_2_VEC_2->HUBERT
class HubertForCTC(HubertPreTrainedModel):
def __init__(self, config, target_lang: Optional[str] = None):
super().__init__(config)
self.hubert = HubertModel(config)
self.dropout = nn.Dropout(config.final_dropout)
self.target_lang = target_lang
if config.vocab_size is None:
raise ValueError(
f"You are trying to instantiate {self.__class__} with a configuration that "
"does not define the vocabulary size of the language model head. Please "
"instantiate the model as follows: `HubertForCTC.from_pretrained(..., vocab_size=vocab_size)`. "
"or define `vocab_size` of your model's configuration."
)
output_hidden_size = (
config.output_hidden_size if hasattr(config, "add_adapter") and config.add_adapter else config.hidden_size
)
self.lm_head = nn.Linear(output_hidden_size, config.vocab_size)
# Initialize weights and apply final processing
self.post_init()
def tie_weights(self):
"""
This method overwrites [`~PreTrainedModel.tie_weights`] so that adapter weights can be correctly loaded when
passing `target_lang=...` to `from_pretrained(...)`.
This method is **not** supposed to be called by the user and is prone to be changed in the future.
"""
# Note that `tie_weights` is usually used to tie input and output embedding weights. The method is re-purposed to
# correctly load adapter layers for Hubert so that we do not have to introduce a new API to
# [`PreTrainedModel`]. While slightly hacky, Hubert never has to tie input and output embeddings, so that it is
# ok to repurpose this function here.
target_lang = self.target_lang
if target_lang is not None and getattr(self.config, "adapter_attn_dim", None) is None:
raise ValueError(f"Cannot pass `target_lang`: {target_lang} if `config.adapter_attn_dim` is not defined.")
elif target_lang is None and getattr(self.config, "adapter_attn_dim", None) is not None:
logger.info("By default `target_lang` is set to 'eng'.")
elif target_lang is not None:
self.load_adapter(target_lang, force_load=True)
def freeze_feature_extractor(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameter will
not be updated during training.
"""
warnings.warn(
"The method `freeze_feature_extractor` is deprecated and will be removed in Transformers v5. "
"Please use the equivalent `freeze_feature_encoder` method instead.",
FutureWarning,
)
self.freeze_feature_encoder()
def freeze_feature_encoder(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameter will
not be updated during training.
"""
self.hubert.feature_extractor._freeze_parameters()
def freeze_base_model(self):
"""
Calling this function will disable the gradient computation for the base model so that its parameters will not
be updated during training. Only the classification head will be updated.
"""
for param in self.hubert.parameters():
param.requires_grad = False
@add_start_docstrings_to_model_forward(HUBERT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=CausalLMOutput,
config_class=_CONFIG_FOR_DOC,
expected_output=_CTC_EXPECTED_OUTPUT,
expected_loss=_CTC_EXPECTED_LOSS,
)
def forward(
self,
input_values: Optional[torch.Tensor],
attention_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: Optional[torch.Tensor] = None,
) -> Union[Tuple, CausalLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, target_length)`, *optional*):
Labels for connectionist temporal classification. Note that `target_length` has to be smaller or equal to
the sequence length of the output logits. Indices are selected in `[-100, 0, ..., config.vocab_size - 1]`.
All labels set to `-100` are ignored (masked), the loss is only computed for labels in `[0, ...,
config.vocab_size - 1]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.hubert(
input_values,
attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0]
hidden_states = self.dropout(hidden_states)
logits = self.lm_head(hidden_states)
loss = None
if labels is not None:
if labels.max() >= self.config.vocab_size:
raise ValueError(f"Label values must be <= vocab_size: {self.config.vocab_size}")
# retrieve loss input_lengths from attention_mask
attention_mask = (
attention_mask if attention_mask is not None else torch.ones_like(input_values, dtype=torch.long)
)
input_lengths = self._get_feat_extract_output_lengths(attention_mask.sum(-1)).to(torch.long)
# assuming that padded tokens are filled with -100
# when not being attended to
labels_mask = labels >= 0
target_lengths = labels_mask.sum(-1)
flattened_targets = labels.masked_select(labels_mask)
# ctc_loss doesn't support fp16
log_probs = nn.functional.log_softmax(logits, dim=-1, dtype=torch.float32).transpose(0, 1)
with torch.backends.cudnn.flags(enabled=False):
loss = nn.functional.ctc_loss(
log_probs,
flattened_targets,
input_lengths,
target_lengths,
blank=self.config.pad_token_id,
reduction=self.config.ctc_loss_reduction,
zero_infinity=self.config.ctc_zero_infinity,
)
if not return_dict:
output = (logits,) + outputs[_HIDDEN_STATES_START_POSITION:]
return ((loss,) + output) if loss is not None else output
return CausalLMOutput(
loss=loss, logits=logits, hidden_states=outputs.hidden_states, attentions=outputs.attentions
)
@add_start_docstrings(
"""
Hubert Model with a sequence classification head on top (a linear layer over the pooled output) for tasks like
SUPERB Keyword Spotting.
""",
HUBERT_START_DOCSTRING,
)
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2ForSequenceClassification with Wav2Vec2->Hubert, wav2vec2->hubert, WAV_2_VEC_2->HUBERT
class HubertForSequenceClassification(HubertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
if hasattr(config, "add_adapter") and config.add_adapter:
raise ValueError(
"Sequence classification does not support the use of Hubert adapters (config.add_adapter=True)"
)
self.hubert = HubertModel(config)
num_layers = config.num_hidden_layers + 1 # transformer layers + input embeddings
if config.use_weighted_layer_sum:
self.layer_weights = nn.Parameter(torch.ones(num_layers) / num_layers)
self.projector = nn.Linear(config.hidden_size, config.classifier_proj_size)
self.classifier = nn.Linear(config.classifier_proj_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
def freeze_feature_extractor(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameters will
not be updated during training.
"""
warnings.warn(
"The method `freeze_feature_extractor` is deprecated and will be removed in Transformers v5. "
"Please use the equivalent `freeze_feature_encoder` method instead.",
FutureWarning,
)
self.freeze_feature_encoder()
def freeze_feature_encoder(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameter will
not be updated during training.
"""
self.hubert.feature_extractor._freeze_parameters()
def freeze_base_model(self):
"""
Calling this function will disable the gradient computation for the base model so that its parameters will not
be updated during training. Only the classification head will be updated.
"""
for param in self.hubert.parameters():
param.requires_grad = False
@add_start_docstrings_to_model_forward(HUBERT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_SEQ_CLASS_CHECKPOINT,
output_type=SequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
modality="audio",
expected_output=_SEQ_CLASS_EXPECTED_OUTPUT,
expected_loss=_SEQ_CLASS_EXPECTED_LOSS,
)
def forward(
self,
input_values: Optional[torch.Tensor],
attention_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: Optional[torch.Tensor] = None,
) -> Union[Tuple, SequenceClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
output_hidden_states = True if self.config.use_weighted_layer_sum else output_hidden_states
outputs = self.hubert(
input_values,
attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
if self.config.use_weighted_layer_sum:
hidden_states = outputs[_HIDDEN_STATES_START_POSITION]
hidden_states = torch.stack(hidden_states, dim=1)
norm_weights = nn.functional.softmax(self.layer_weights, dim=-1)
hidden_states = (hidden_states * norm_weights.view(-1, 1, 1)).sum(dim=1)
else:
hidden_states = outputs[0]
hidden_states = self.projector(hidden_states)
if attention_mask is None:
pooled_output = hidden_states.mean(dim=1)
else:
padding_mask = self._get_feature_vector_attention_mask(hidden_states.shape[1], attention_mask)
hidden_states[~padding_mask] = 0.0
pooled_output = hidden_states.sum(dim=1) / padding_mask.sum(dim=1).view(-1, 1)
logits = self.classifier(pooled_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.config.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[_HIDDEN_STATES_START_POSITION:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/ctrl/__init__.py | # Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_tf_available, is_torch_available
_import_structure = {
"configuration_ctrl": ["CTRL_PRETRAINED_CONFIG_ARCHIVE_MAP", "CTRLConfig"],
"tokenization_ctrl": ["CTRLTokenizer"],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_ctrl"] = [
"CTRL_PRETRAINED_MODEL_ARCHIVE_LIST",
"CTRLForSequenceClassification",
"CTRLLMHeadModel",
"CTRLModel",
"CTRLPreTrainedModel",
]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_ctrl"] = [
"TF_CTRL_PRETRAINED_MODEL_ARCHIVE_LIST",
"TFCTRLForSequenceClassification",
"TFCTRLLMHeadModel",
"TFCTRLModel",
"TFCTRLPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_ctrl import CTRL_PRETRAINED_CONFIG_ARCHIVE_MAP, CTRLConfig
from .tokenization_ctrl import CTRLTokenizer
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_ctrl import (
CTRL_PRETRAINED_MODEL_ARCHIVE_LIST,
CTRLForSequenceClassification,
CTRLLMHeadModel,
CTRLModel,
CTRLPreTrainedModel,
)
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_ctrl import (
TF_CTRL_PRETRAINED_MODEL_ARCHIVE_LIST,
TFCTRLForSequenceClassification,
TFCTRLLMHeadModel,
TFCTRLModel,
TFCTRLPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/ctrl/tokenization_ctrl.py | # coding=utf-8
# Copyright 2018 Salesforce and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes for Salesforce CTRL."""
import json
import os
from typing import Optional, Tuple
import regex as re
from ...tokenization_utils import PreTrainedTokenizer
from ...utils import logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {
"vocab_file": "vocab.json",
"merges_file": "merges.txt",
}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {"ctrl": "https://raw.githubusercontent.com/salesforce/ctrl/master/ctrl-vocab.json"},
"merges_file": {"ctrl": "https://raw.githubusercontent.com/salesforce/ctrl/master/ctrl-merges.txt"},
}
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {
"ctrl": 256,
}
CONTROL_CODES = {
"Pregnancy": 168629,
"Christianity": 7675,
"Explain": 106423,
"Fitness": 63440,
"Saving": 63163,
"Ask": 27171,
"Ass": 95985,
"Joke": 163509,
"Questions": 45622,
"Thoughts": 49605,
"Retail": 52342,
"Feminism": 164338,
"Writing": 11992,
"Atheism": 192263,
"Netflix": 48616,
"Computing": 39639,
"Opinion": 43213,
"Alone": 44967,
"Funny": 58917,
"Gaming": 40358,
"Human": 4088,
"India": 1331,
"Joker": 77138,
"Diet": 36206,
"Legal": 11859,
"Norman": 4939,
"Tip": 72689,
"Weight": 52343,
"Movies": 46273,
"Running": 23425,
"Science": 2090,
"Horror": 37793,
"Confession": 60572,
"Finance": 12250,
"Politics": 16360,
"Scary": 191985,
"Support": 12654,
"Technologies": 32516,
"Teenage": 66160,
"Event": 32769,
"Learned": 67460,
"Notion": 182770,
"Wikipedia": 37583,
"Books": 6665,
"Extract": 76050,
"Confessions": 102701,
"Conspiracy": 75932,
"Links": 63674,
"Narcissus": 150425,
"Relationship": 54766,
"Relationships": 134796,
"Reviews": 41671,
"News": 4256,
"Translation": 26820,
"multilingual": 128406,
}
def get_pairs(word):
"""
Return set of symbol pairs in a word.
Word is represented as tuple of symbols (symbols being variable-length strings).
"""
pairs = set()
prev_char = word[0]
for char in word[1:]:
pairs.add((prev_char, char))
prev_char = char
pairs = set(pairs)
return pairs
class CTRLTokenizer(PreTrainedTokenizer):
"""
Construct a CTRL tokenizer. Based on Byte-Pair-Encoding.
This tokenizer inherits from [`PreTrainedTokenizer`] which contains most of the main methods. Users should refer to
this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
Path to the vocabulary file.
merges_file (`str`):
Path to the merges file.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
control_codes = CONTROL_CODES
def __init__(self, vocab_file, merges_file, unk_token="<unk>", **kwargs):
with open(vocab_file, encoding="utf-8") as vocab_handle:
self.encoder = json.load(vocab_handle)
self.decoder = {v: k for k, v in self.encoder.items()}
with open(merges_file, encoding="utf-8") as merges_handle:
merges = merges_handle.read().split("\n")[1:-1]
merges = [tuple(merge.split()) for merge in merges]
self.bpe_ranks = dict(zip(merges, range(len(merges))))
self.cache = {}
super().__init__(unk_token=unk_token, **kwargs)
@property
def vocab_size(self):
return len(self.encoder)
def get_vocab(self):
return dict(self.encoder, **self.added_tokens_encoder)
def bpe(self, token):
if token in self.cache:
return self.cache[token]
word = tuple(token)
word = tuple(list(word[:-1]) + [word[-1] + "</w>"])
pairs = get_pairs(word)
if not pairs:
return token
while True:
bigram = min(pairs, key=lambda pair: self.bpe_ranks.get(pair, float("inf")))
if bigram not in self.bpe_ranks:
break
first, second = bigram
new_word = []
i = 0
while i < len(word):
try:
j = word.index(first, i)
except ValueError:
new_word.extend(word[i:])
break
else:
new_word.extend(word[i:j])
i = j
if word[i] == first and i < len(word) - 1 and word[i + 1] == second:
new_word.append(first + second)
i += 2
else:
new_word.append(word[i])
i += 1
new_word = tuple(new_word)
word = new_word
if len(word) == 1:
break
else:
pairs = get_pairs(word)
word = "@@ ".join(word)
word = word[:-4]
self.cache[token] = word
return word
def _tokenize(self, text):
"""Tokenize a string."""
split_tokens = []
words = re.findall(r"\S+\n?", text)
for token in words:
split_tokens.extend(list(self.bpe(token).split(" ")))
return split_tokens
def _convert_token_to_id(self, token):
"""Converts a token (str) in an id using the vocab."""
return self.encoder.get(token, self.encoder.get(self.unk_token))
def _convert_id_to_token(self, index):
"""Converts an index (integer) in a token (str) using the vocab."""
return self.decoder.get(index, self.unk_token)
def convert_tokens_to_string(self, tokens):
"""Converts a sequence of tokens (string) in a single string."""
out_string = " ".join(tokens).replace("@@ ", "").strip()
return out_string
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory")
return
vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
merge_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["merges_file"]
)
with open(vocab_file, "w", encoding="utf-8") as f:
f.write(json.dumps(self.encoder, indent=2, sort_keys=True, ensure_ascii=False) + "\n")
index = 0
with open(merge_file, "w", encoding="utf-8") as writer:
writer.write("#version: 0.2\n")
for bpe_tokens, token_index in sorted(self.bpe_ranks.items(), key=lambda kv: kv[1]):
if index != token_index:
logger.warning(
f"Saving vocabulary to {merge_file}: BPE merge indices are not consecutive."
" Please check that the tokenizer is not corrupted!"
)
index = token_index
writer.write(" ".join(bpe_tokens) + "\n")
index += 1
return vocab_file, merge_file
# def decode(self, token_ids, skip_special_tokens=False, clean_up_tokenization_spaces=True):
# filtered_tokens = ' '.join(self.convert_ids_to_tokens(token_ids, skip_special_tokens=skip_special_tokens))
# tokens_generated_so_far = re.sub('(@@ )', '', string=filtered_tokens)
# tokens_generated_so_far = re.sub('(@@ ?$)', '', string=tokens_generated_so_far)
# return ''.join(tokens_generated_so_far)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/ctrl/modeling_ctrl.py | # coding=utf-8
# Copyright 2018 Salesforce and HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch CTRL model."""
from typing import Optional, Tuple, Union
import numpy as np
import torch
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...modeling_outputs import BaseModelOutputWithPast, CausalLMOutputWithPast, SequenceClassifierOutput
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import Conv1D, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_ctrl import CTRLConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "CTRLConfig"
CTRL_PRETRAINED_MODEL_ARCHIVE_LIST = [
"Salesforce/ctrl"
# See all CTRL models at https://huggingface.co/models?filter=ctrl
]
def angle_defn(pos, i, d_model_size):
angle_rates = 1 / torch.pow(10000, (2 * (i // 2)) / d_model_size)
return pos * angle_rates
def positional_encoding(position, d_model_size, dtype):
# create the sinusoidal pattern for the positional encoding
angle_rads = angle_defn(
torch.arange(position, dtype=dtype).unsqueeze(1),
torch.arange(d_model_size, dtype=dtype).unsqueeze(0),
d_model_size,
)
sines = torch.sin(angle_rads[:, 0::2])
cosines = torch.cos(angle_rads[:, 1::2])
pos_encoding = torch.cat([sines, cosines], dim=-1)
return pos_encoding
def scaled_dot_product_attention(q, k, v, mask, attention_mask=None, head_mask=None):
# calculate attention
matmul_qk = torch.matmul(q, k.permute(0, 1, 3, 2))
dk = k.shape[-1]
scaled_attention_logits = matmul_qk / np.sqrt(dk)
if mask is not None:
nd, ns = scaled_attention_logits.size(-2), scaled_attention_logits.size(-1)
scaled_attention_logits += mask[ns - nd : ns, :ns] * -1e4
if attention_mask is not None:
# Apply the attention mask
scaled_attention_logits = scaled_attention_logits + attention_mask
attention_weights = torch.softmax(scaled_attention_logits, dim=-1)
# Mask heads if we want to
if head_mask is not None:
attention_weights = attention_weights * head_mask
output = torch.matmul(attention_weights, v)
return output, attention_weights
class MultiHeadAttention(nn.Module):
def __init__(self, d_model_size, num_heads):
super().__init__()
self.num_heads = num_heads
self.d_model_size = d_model_size
self.depth = int(d_model_size / self.num_heads)
self.Wq = nn.Linear(d_model_size, d_model_size)
self.Wk = nn.Linear(d_model_size, d_model_size)
self.Wv = nn.Linear(d_model_size, d_model_size)
self.dense = nn.Linear(d_model_size, d_model_size)
self.pruned_heads = set()
def prune_heads(self, heads):
attention_head_size = self.d_model_size // self.num_heads
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(heads, self.num_heads, attention_head_size, self.pruned_heads)
# Prune linear layers
self.Wq = prune_linear_layer(self.Wq, index)
self.Wk = prune_linear_layer(self.Wk, index)
self.Wv = prune_linear_layer(self.Wv, index)
self.dense = prune_linear_layer(self.dense, index, dim=1)
# Update hyper params
self.num_heads = self.num_heads - len(heads)
self.d_model_size = attention_head_size * self.num_heads
self.pruned_heads = self.pruned_heads.union(heads)
def split_into_heads(self, x, batch_size):
x = x.reshape(batch_size, -1, self.num_heads, self.depth)
return x.permute([0, 2, 1, 3])
def forward(
self,
v,
k,
q,
mask,
layer_past=None,
attention_mask=None,
head_mask=None,
use_cache=False,
output_attentions=False,
):
batch_size = q.shape[0]
q = self.Wq(q)
k = self.Wk(k)
v = self.Wv(v)
q = self.split_into_heads(q, batch_size)
k = self.split_into_heads(k, batch_size)
v = self.split_into_heads(v, batch_size)
if layer_past is not None:
past_key, past_value = layer_past[0], layer_past[1]
k = torch.cat((past_key, k), dim=-2)
v = torch.cat((past_value, v), dim=-2)
if use_cache is True:
present = torch.stack((k, v))
else:
present = (None,)
output = scaled_dot_product_attention(q, k, v, mask, attention_mask, head_mask)
scaled_attention = output[0].permute([0, 2, 1, 3])
attn = output[1]
original_size_attention = scaled_attention.reshape(batch_size, -1, self.d_model_size)
output = self.dense(original_size_attention)
outputs = (output, present)
if output_attentions:
outputs = outputs + (attn,)
return outputs
def point_wise_feed_forward_network(d_model_size, dff):
return nn.Sequential(nn.Linear(d_model_size, dff), nn.ReLU(), nn.Linear(dff, d_model_size))
class EncoderLayer(nn.Module):
def __init__(self, d_model_size, num_heads, dff, rate=0.1):
super().__init__()
self.multi_head_attention = MultiHeadAttention(d_model_size, num_heads)
self.ffn = point_wise_feed_forward_network(d_model_size, dff)
self.layernorm1 = nn.LayerNorm(d_model_size, eps=1e-6)
self.layernorm2 = nn.LayerNorm(d_model_size, eps=1e-6)
self.dropout1 = nn.Dropout(rate)
self.dropout2 = nn.Dropout(rate)
def forward(
self, x, mask, layer_past=None, attention_mask=None, head_mask=None, use_cache=False, output_attentions=False
):
normed = self.layernorm1(x)
attn_outputs = self.multi_head_attention(
normed,
normed,
normed,
mask,
layer_past=layer_past,
attention_mask=attention_mask,
head_mask=head_mask,
use_cache=use_cache,
output_attentions=output_attentions,
)
attn_output = attn_outputs[0]
attn_output = self.dropout1(attn_output)
out1 = x + attn_output
out2 = self.layernorm2(out1)
ffn_output = self.ffn(out2)
ffn_output = self.dropout2(ffn_output)
out2 = out1 + ffn_output
outputs = (out2,) + attn_outputs[1:]
return outputs
class CTRLPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = CTRLConfig
base_model_prefix = "transformer"
def _init_weights(self, module):
"""Initialize the weights."""
if isinstance(module, (nn.Linear, Conv1D)):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
CTRL_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`CTRLConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
CTRL_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
`input_ids_length` = `sequence_length` if `past_key_values` is `None` else `past_key_values[0].shape[-2]`
(`sequence_length` of input past key value states). Indices of input sequence tokens in the vocabulary.
If `past_key_values` is used, only input IDs that do not have their past calculated should be passed as
`input_ids`.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.__call__`] and
[`PreTrainedTokenizer.encode`] for details.
[What are input IDs?](../glossary#input-ids)
past_key_values (`Tuple[Tuple[torch.FloatTensor]]` of length `config.n_layers`):
Contains pre-computed hidden-states (key and values in the attention blocks) as computed by the model (see
`past_key_values` output below). Can be used to speed up sequential decoding. The `input_ids` which have
their past given to this model should not be passed as input ids as they have already been computed.
attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
token_type_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare CTRL Model transformer outputting raw hidden-states without any specific head on top.",
CTRL_START_DOCSTRING,
)
class CTRLModel(CTRLPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.d_model_size = config.n_embd
self.num_layers = config.n_layer
self.pos_encoding = positional_encoding(config.n_positions, self.d_model_size, torch.float)
self.w = nn.Embedding(config.vocab_size, config.n_embd)
self.dropout = nn.Dropout(config.embd_pdrop)
self.h = nn.ModuleList(
[EncoderLayer(config.n_embd, config.n_head, config.dff, config.resid_pdrop) for _ in range(config.n_layer)]
)
self.layernorm = nn.LayerNorm(config.n_embd, eps=config.layer_norm_epsilon)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.w
def set_input_embeddings(self, new_embeddings):
self.w = new_embeddings
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer}
"""
for layer, heads in heads_to_prune.items():
self.h[layer].multi_head_attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(CTRL_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=BaseModelOutputWithPast, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], BaseModelOutputWithPast]:
r"""
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, CTRLModel
>>> import torch
>>> tokenizer = AutoTokenizer.from_pretrained("Salesforce/ctrl")
>>> model = CTRLModel.from_pretrained("Salesforce/ctrl")
>>> # CTRL was trained with control codes as the first token
>>> inputs = tokenizer("Opinion My dog is cute", return_tensors="pt")
>>> assert inputs["input_ids"][0, 0].item() in tokenizer.control_codes.values()
>>> outputs = model(**inputs)
>>> last_hidden_states = outputs.last_hidden_state
>>> list(last_hidden_states.shape)
[1, 5, 1280]
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
use_cache = use_cache if use_cache is not None else self.config.use_cache
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
self.warn_if_padding_and_no_attention_mask(input_ids, attention_mask)
input_shape = input_ids.size()
input_ids = input_ids.view(-1, input_shape[-1])
batch_size = input_ids.shape[0]
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
batch_size = inputs_embeds.shape[0]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
device = input_ids.device if input_ids is not None else inputs_embeds.device
if past_key_values is None:
past_length = 0
past_key_values = tuple([None] * len(self.h))
else:
past_length = past_key_values[0][0].size(-2)
if position_ids is None:
position_ids = torch.arange(past_length, input_shape[-1] + past_length, dtype=torch.long, device=device)
position_ids = position_ids.unsqueeze(0)
# Attention mask.
if attention_mask is not None:
if batch_size <= 0:
raise ValueError("batch_size has to be defined and > 0")
attention_mask = attention_mask.view(batch_size, -1)
# We create a 3D attention mask from a 2D tensor mask.
# Sizes are [batch_size, 1, 1, to_seq_length]
# So we can broadcast to [batch_size, num_heads, from_seq_length, to_seq_length]
# this attention mask is more simple than the triangular masking of causal attention
# used in OpenAI GPT, we just need to prepare the broadcast dimension here.
attention_mask = attention_mask.unsqueeze(1).unsqueeze(2)
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and the dtype's smallest value for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
attention_mask = attention_mask.to(dtype=self.dtype) # fp16 compatibility
attention_mask = (1.0 - attention_mask) * torch.finfo(self.dtype).min
# Prepare head mask if needed
head_mask = self.get_head_mask(head_mask, self.config.n_layer)
if token_type_ids is not None:
token_type_ids = token_type_ids.view(-1, input_shape[-1])
token_type_embeds = self.w(token_type_ids)
token_type_embeds *= np.sqrt(self.d_model_size)
else:
token_type_embeds = 0
if inputs_embeds is None:
inputs_embeds = self.w(input_ids)
# inputs_embeds = embedded.unsqueeze(0) if len(input_ids.shape)<2 else embedded
seq_len = input_shape[-1]
mask = torch.triu(torch.ones(seq_len + past_length, seq_len + past_length), 1).to(device)
inputs_embeds *= np.sqrt(self.d_model_size)
# `self.pos_encoding` won't be sent to the correct device along the model, so we do it manually.
self.pos_encoding = self.pos_encoding.to(device)
pos_embeds = self.pos_encoding[position_ids, :]
hidden_states = inputs_embeds + pos_embeds + token_type_embeds
hidden_states = self.dropout(hidden_states)
presents = () if use_cache else None
all_hidden_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
for i, (h, layer_past) in enumerate(zip(self.h, past_key_values)):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
outputs = h(
hidden_states,
mask,
layer_past=layer_past,
attention_mask=attention_mask,
head_mask=head_mask[i],
use_cache=use_cache,
output_attentions=output_attentions,
)
hidden_states, present = outputs[:2]
if use_cache is True:
presents = presents + (present,)
if output_attentions:
all_attentions += (outputs[2],)
hidden_states = self.layernorm(hidden_states)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, presents, all_hidden_states, all_attentions] if v is not None)
return BaseModelOutputWithPast(
last_hidden_state=hidden_states,
past_key_values=presents,
hidden_states=all_hidden_states,
attentions=all_attentions,
)
@add_start_docstrings(
"""
The CTRL Model transformer with a language modeling head on top (linear layer with weights tied to the input
embeddings).
""",
CTRL_START_DOCSTRING,
)
class CTRLLMHeadModel(CTRLPreTrainedModel):
_tied_weights_keys = ["lm_head.weight"]
def __init__(self, config):
super().__init__(config)
self.transformer = CTRLModel(config)
self.lm_head = nn.Linear(config.n_embd, config.vocab_size, bias=True)
# Initialize weights and apply final processing
self.post_init()
def get_output_embeddings(self):
return self.lm_head
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
def prepare_inputs_for_generation(self, input_ids, past_key_values=None, use_cache=None, **kwargs):
# only last tokens for inputs_ids if past is defined in kwargs
if past_key_values is not None:
past_length = past_key_values[0][0].shape[2]
# Some generation methods already pass only the last input ID
if input_ids.shape[1] > past_length:
remove_prefix_length = past_length
else:
# Default to old behavior: keep only final ID
remove_prefix_length = input_ids.shape[1] - 1
input_ids = input_ids[:, remove_prefix_length:]
return {"input_ids": input_ids, "past_key_values": past_key_values, "use_cache": use_cache}
@add_start_docstrings_to_model_forward(CTRL_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=CausalLMOutputWithPast, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], CausalLMOutputWithPast]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for language modeling. Note that the labels **are shifted** inside the model, i.e. you can set
`labels = input_ids` Indices are selected in `[-100, 0, ..., config.vocab_size]` All labels set to `-100`
are ignored (masked), the loss is only computed for labels in `[0, ..., config.vocab_size]`
Returns:
Example:
```python
>>> import torch
>>> from transformers import AutoTokenizer, CTRLLMHeadModel
>>> tokenizer = AutoTokenizer.from_pretrained("Salesforce/ctrl")
>>> model = CTRLLMHeadModel.from_pretrained("Salesforce/ctrl")
>>> # CTRL was trained with control codes as the first token
>>> inputs = tokenizer("Wikipedia The llama is", return_tensors="pt")
>>> assert inputs["input_ids"][0, 0].item() in tokenizer.control_codes.values()
>>> sequence_ids = model.generate(inputs["input_ids"])
>>> sequences = tokenizer.batch_decode(sequence_ids)
>>> sequences
['Wikipedia The llama is a member of the family Bovidae. It is native to the Andes of Peru,']
>>> outputs = model(**inputs, labels=inputs["input_ids"])
>>> round(outputs.loss.item(), 2)
9.21
>>> list(outputs.logits.shape)
[1, 5, 246534]
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.transformer(
input_ids,
past_key_values=past_key_values,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = transformer_outputs[0]
lm_logits = self.lm_head(hidden_states)
loss = None
if labels is not None:
# Shift so that tokens < n predict n
shift_logits = lm_logits[..., :-1, :].contiguous()
shift_labels = labels[..., 1:].contiguous()
# Flatten the tokens
loss_fct = CrossEntropyLoss()
loss = loss_fct(shift_logits.view(-1, shift_logits.size(-1)), shift_labels.view(-1))
if not return_dict:
output = (lm_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return CausalLMOutputWithPast(
loss=loss,
logits=lm_logits,
past_key_values=transformer_outputs.past_key_values,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
@staticmethod
def _reorder_cache(
past_key_values: Tuple[Tuple[torch.Tensor]], beam_idx: torch.Tensor
) -> Tuple[Tuple[torch.Tensor]]:
"""
This function is used to re-order the `past_key_values` cache if [`~PreTrainedModel.beam_search`] or
[`~PreTrainedModel.beam_sample`] is called. This is required to match `past_key_values` with the correct
beam_idx at every generation step.
"""
return tuple(
tuple(past_state.index_select(0, beam_idx.to(past_state.device)) for past_state in layer_past)
for layer_past in past_key_values
)
@add_start_docstrings(
"""
The CTRL Model transformer with a sequence classification head on top (linear layer).
[`CTRLForSequenceClassification`] uses the last token in order to do the classification, as other causal models
(e.g. GPT-2) do. Since it does classification on the last token, it requires to know the position of the last
token. If a `pad_token_id` is defined in the configuration, it finds the last token that is not a padding token in
each row. If no `pad_token_id` is defined, it simply takes the last value in each row of the batch. Since it cannot
guess the padding tokens when `inputs_embeds` are passed instead of `input_ids`, it does the same (take the last
value in each row of the batch).
""",
CTRL_START_DOCSTRING,
)
class CTRLForSequenceClassification(CTRLPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.transformer = CTRLModel(config)
self.classifier = nn.Linear(config.n_embd, self.num_labels, bias=False)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(CTRL_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=SequenceClassifierOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], SequenceClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
Returns:
Example of single-label classification:
```python
>>> import torch
>>> from transformers import AutoTokenizer, CTRLForSequenceClassification
>>> tokenizer = AutoTokenizer.from_pretrained("Salesforce/ctrl")
>>> model = CTRLForSequenceClassification.from_pretrained("Salesforce/ctrl")
>>> # CTRL was trained with control codes as the first token
>>> inputs = tokenizer("Opinion My dog is cute", return_tensors="pt")
>>> assert inputs["input_ids"][0, 0].item() in tokenizer.control_codes.values()
>>> with torch.no_grad():
... logits = model(**inputs).logits
>>> predicted_class_id = logits.argmax().item()
>>> model.config.id2label[predicted_class_id]
'LABEL_0'
```
```python
>>> import torch
>>> torch.manual_seed(42) # doctest: +IGNORE_RESULT
>>> # To train a model on `num_labels` classes, you can pass `num_labels=num_labels` to `.from_pretrained(...)`
>>> num_labels = len(model.config.id2label)
>>> model = CTRLForSequenceClassification.from_pretrained("Salesforce/ctrl", num_labels=num_labels)
>>> labels = torch.tensor(1)
>>> loss = model(**inputs, labels=labels).loss
>>> round(loss.item(), 2)
0.35
```
Example of multi-label classification:
```python
>>> import torch
>>> from transformers import AutoTokenizer, CTRLForSequenceClassification
>>> tokenizer = AutoTokenizer.from_pretrained("Salesforce/ctrl")
>>> model = CTRLForSequenceClassification.from_pretrained(
... "Salesforce/ctrl", problem_type="multi_label_classification"
... )
>>> # CTRL was trained with control codes as the first token
>>> inputs = tokenizer("Opinion My dog is cute", return_tensors="pt")
>>> assert inputs["input_ids"][0, 0].item() in tokenizer.control_codes.values()
>>> with torch.no_grad():
... logits = model(**inputs).logits
>>> predicted_class_id = logits.argmax().item()
>>> model.config.id2label[predicted_class_id]
'LABEL_0'
```
```python
>>> # To train a model on `num_labels` classes, you can pass `num_labels=num_labels` to `.from_pretrained(...)`
>>> num_labels = len(model.config.id2label)
>>> model = CTRLForSequenceClassification.from_pretrained("Salesforce/ctrl", num_labels=num_labels)
>>> num_labels = len(model.config.id2label)
>>> labels = torch.nn.functional.one_hot(torch.tensor([predicted_class_id]), num_classes=num_labels).to(
... torch.float
... )
>>> loss = model(**inputs, labels=labels).loss
>>> loss.backward() # doctest: +IGNORE_RESULT
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.transformer(
input_ids,
past_key_values=past_key_values,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = transformer_outputs[0]
logits = self.classifier(hidden_states)
if input_ids is not None:
batch_size, sequence_length = input_ids.shape[:2]
else:
batch_size, sequence_length = inputs_embeds.shape[:2]
if self.config.pad_token_id is None and batch_size != 1:
raise ValueError("Cannot handle batch sizes > 1 if no padding token is defined.")
if self.config.pad_token_id is None:
sequence_lengths = -1
else:
if input_ids is not None:
# if no pad token found, use modulo instead of reverse indexing for ONNX compatibility
sequence_lengths = torch.eq(input_ids, self.config.pad_token_id).int().argmax(-1) - 1
sequence_lengths = sequence_lengths % input_ids.shape[-1]
sequence_lengths = sequence_lengths.to(logits.device)
else:
sequence_lengths = -1
logger.warning(
f"{self.__class__.__name__} will not detect padding tokens in `inputs_embeds`. Results may be "
"unexpected if using padding tokens in conjunction with `inputs_embeds.`"
)
pooled_logits = logits[range(batch_size), sequence_lengths]
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(pooled_logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(pooled_logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(pooled_logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(pooled_logits, labels)
if not return_dict:
output = (pooled_logits,) + transformer_outputs[2:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=pooled_logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/ctrl/modeling_tf_ctrl.py | # coding=utf-8
# Copyright 2018 Salesforce and HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" TF 2.0 CTRL model."""
from __future__ import annotations
from typing import Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...modeling_tf_outputs import TFBaseModelOutputWithPast, TFCausalLMOutputWithPast, TFSequenceClassifierOutput
from ...modeling_tf_utils import (
TFCausalLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFSequenceClassificationLoss,
get_initializer,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import check_embeddings_within_bounds, shape_list, stable_softmax
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_ctrl import CTRLConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "Salesforce/ctrl"
_CONFIG_FOR_DOC = "CTRLConfig"
TF_CTRL_PRETRAINED_MODEL_ARCHIVE_LIST = [
"Salesforce/ctrl"
# See all CTRL models at https://huggingface.co/models?filter=ctrl
]
def angle_defn(pos, i, d_model_size):
angle_rates = 1 / np.power(10000, (2 * (i // 2)) / d_model_size)
return pos * angle_rates
def positional_encoding(position, d_model_size):
# create the sinusoidal pattern for the positional encoding
angle_rads = angle_defn(np.arange(position)[:, np.newaxis], np.arange(d_model_size)[np.newaxis, :], d_model_size)
sines = np.sin(angle_rads[:, 0::2])
cosines = np.cos(angle_rads[:, 1::2])
pos_encoding = tf.convert_to_tensor(np.concatenate([sines, cosines], axis=-1))
return pos_encoding
def scaled_dot_product_attention(q, k, v, mask, attention_mask=None, head_mask=None):
# calculate attention
matmul_qk = tf.matmul(q, k, transpose_b=True)
dk = tf.cast(shape_list(k)[-1], dtype=matmul_qk.dtype)
scaled_attention_logits = matmul_qk / tf.math.sqrt(dk)
if mask is not None:
scaled_attention_logits += tf.cast(mask * -1e4, dtype=scaled_attention_logits.dtype)
if attention_mask is not None:
# Apply the attention mask
attention_mask = tf.cast(attention_mask, dtype=scaled_attention_logits.dtype)
scaled_attention_logits = scaled_attention_logits + attention_mask
attention_weights = stable_softmax(scaled_attention_logits, axis=-1)
# Mask heads if we want to
if head_mask is not None:
attention_weights = attention_weights * head_mask
output = tf.matmul(attention_weights, v)
return output, attention_weights
class TFMultiHeadAttention(tf.keras.layers.Layer):
def __init__(self, d_model_size, num_heads, output_attentions=False, **kwargs):
super().__init__(**kwargs)
self.num_heads = num_heads
self.d_model_size = d_model_size
self.output_attentions = output_attentions
self.depth = int(d_model_size / self.num_heads)
self.Wq = tf.keras.layers.Dense(d_model_size, name="Wq")
self.Wk = tf.keras.layers.Dense(d_model_size, name="Wk")
self.Wv = tf.keras.layers.Dense(d_model_size, name="Wv")
self.dense = tf.keras.layers.Dense(d_model_size, name="dense")
def split_into_heads(self, x, batch_size):
x = tf.reshape(x, (batch_size, -1, self.num_heads, self.depth))
return tf.transpose(x, perm=[0, 2, 1, 3])
def call(self, v, k, q, mask, layer_past, attention_mask, head_mask, use_cache, output_attentions, training=False):
batch_size = shape_list(q)[0]
q = self.Wq(q)
k = self.Wk(k)
v = self.Wv(v)
q = self.split_into_heads(q, batch_size)
k = self.split_into_heads(k, batch_size)
v = self.split_into_heads(v, batch_size)
if layer_past is not None:
past_key, past_value = tf.unstack(layer_past, axis=0)
k = tf.concat((past_key, k), axis=-2)
v = tf.concat((past_value, v), axis=-2)
if use_cache:
present = tf.stack((k, v), axis=0)
else:
present = (None,)
output = scaled_dot_product_attention(q, k, v, mask, attention_mask, head_mask)
scaled_attention = tf.transpose(output[0], perm=[0, 2, 1, 3])
attn = output[1]
original_size_attention = tf.reshape(scaled_attention, (batch_size, -1, self.d_model_size))
output = self.dense(original_size_attention)
outputs = (output, present)
if output_attentions:
outputs = outputs + (attn,)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "Wq", None) is not None:
with tf.name_scope(self.Wq.name):
self.Wq.build([None, None, self.d_model_size])
if getattr(self, "Wk", None) is not None:
with tf.name_scope(self.Wk.name):
self.Wk.build([None, None, self.d_model_size])
if getattr(self, "Wv", None) is not None:
with tf.name_scope(self.Wv.name):
self.Wv.build([None, None, self.d_model_size])
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.d_model_size])
class TFPointWiseFeedForwardLayer(tf.keras.layers.Layer):
def __init__(self, d_model_size, dff, **kwargs):
super().__init__(**kwargs)
self.dense_0 = tf.keras.layers.Dense(dff, activation="relu", name="0")
self.dense_2 = tf.keras.layers.Dense(d_model_size, name="2")
self.d_model_size = d_model_size
self.dff = dff
def call(self, inputs, trainable=False):
dense_0_output = self.dense_0(inputs)
dense_2_output = self.dense_2(dense_0_output)
return dense_2_output
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense_0", None) is not None:
with tf.name_scope(self.dense_0.name):
self.dense_0.build([None, None, self.d_model_size])
if getattr(self, "dense_2", None) is not None:
with tf.name_scope(self.dense_2.name):
self.dense_2.build([None, None, self.dff])
class TFEncoderLayer(tf.keras.layers.Layer):
def __init__(
self, d_model_size, num_heads, dff, rate=0.1, layer_norm_epsilon=1e-6, output_attentions=False, **kwargs
):
super().__init__(**kwargs)
self.output_attentions = output_attentions
self.multi_head_attention = TFMultiHeadAttention(
d_model_size, num_heads, output_attentions=self.output_attentions, name="multi_head_attention"
)
self.ffn = TFPointWiseFeedForwardLayer(d_model_size, dff, name="ffn")
self.layernorm1 = tf.keras.layers.LayerNormalization(epsilon=layer_norm_epsilon, name="layernorm1")
self.layernorm2 = tf.keras.layers.LayerNormalization(epsilon=layer_norm_epsilon, name="layernorm2")
self.dropout1 = tf.keras.layers.Dropout(rate)
self.dropout2 = tf.keras.layers.Dropout(rate)
self.d_model_size = d_model_size
def call(self, x, mask, layer_past, attention_mask, head_mask, use_cache, output_attentions, training=False):
normed = self.layernorm1(x)
attn_outputs = self.multi_head_attention(
normed,
normed,
normed,
mask,
layer_past,
attention_mask,
head_mask,
use_cache,
output_attentions,
training=training,
)
attn_output = attn_outputs[0]
attn_output = self.dropout1(attn_output, training=training)
out1 = x + attn_output
out2 = self.layernorm2(out1)
ffn_output = self.ffn(out2)
ffn_output = self.dropout2(ffn_output, training=training)
out2 = out1 + ffn_output
outputs = (out2,) + attn_outputs[1:]
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "multi_head_attention", None) is not None:
with tf.name_scope(self.multi_head_attention.name):
self.multi_head_attention.build(None)
if getattr(self, "ffn", None) is not None:
with tf.name_scope(self.ffn.name):
self.ffn.build(None)
if getattr(self, "layernorm1", None) is not None:
with tf.name_scope(self.layernorm1.name):
self.layernorm1.build([None, None, self.d_model_size])
if getattr(self, "layernorm2", None) is not None:
with tf.name_scope(self.layernorm2.name):
self.layernorm2.build([None, None, self.d_model_size])
@keras_serializable
class TFCTRLMainLayer(tf.keras.layers.Layer):
config_class = CTRLConfig
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.config = config
self.output_hidden_states = config.output_hidden_states
self.output_attentions = config.output_attentions
self.use_cache = config.use_cache
self.return_dict = config.use_return_dict
self.d_model_size = config.n_embd
self.num_layers = config.n_layer
self.pos_encoding = positional_encoding(config.n_positions, self.d_model_size)
self.w = tf.keras.layers.Embedding(
input_dim=config.vocab_size,
output_dim=config.n_embd,
embeddings_initializer=get_initializer(config.initializer_range),
name="w",
)
self.dropout = tf.keras.layers.Dropout(config.embd_pdrop)
self.h = [
TFEncoderLayer(
config.n_embd,
config.n_head,
config.dff,
config.resid_pdrop,
config.layer_norm_epsilon,
self.output_attentions,
name=f"h_._{i}",
)
for i in range(config.n_layer)
]
self.layernorm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_epsilon, name="layernorm")
def get_input_embeddings(self):
return self.w
def set_input_embeddings(self, new_embeddings):
self.w = new_embeddings
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer}
"""
raise NotImplementedError
@unpack_inputs
def call(
self,
input_ids: TFModelInputType | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[Tuple, TFBaseModelOutputWithPast]:
# If using past key value states, only the last tokens
# should be given as an input
if past_key_values is not None:
if input_ids is not None:
input_ids = input_ids[:, -1:]
if inputs_embeds is not None:
inputs_embeds = inputs_embeds[:, -1:]
if token_type_ids is not None:
token_type_ids = token_type_ids[:, -1:]
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = shape_list(input_ids)
input_ids = tf.reshape(input_ids, [-1, input_shape[-1]])
elif inputs_embeds is not None:
input_shape = shape_list(inputs_embeds)[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if past_key_values is None:
past_length = 0
past_key_values = [None] * len(self.h)
else:
past_length = shape_list(past_key_values[0][0])[-2]
if position_ids is None:
position_ids = tf.expand_dims(tf.range(past_length, input_shape[-1] + past_length, dtype=tf.int32), axis=0)
position_ids = tf.tile(position_ids, [input_shape[0], 1])
# Attention mask.
if attention_mask is not None:
# We create a 3D attention mask from a 2D tensor mask.
# Sizes are [batch_size, 1, 1, to_seq_length]
# So we can broadcast to [batch_size, num_heads, from_seq_length, to_seq_length]
# this attention mask is more simple than the triangular masking of causal attention
# used in OpenAI GPT, we just need to prepare the broadcast dimension here.
attention_mask = tf.reshape(attention_mask, (input_shape[0], 1, 1, input_shape[1] + past_length))
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and -10000.0 for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
one_cst = tf.constant(1.0)
ten_thousand_cst = tf.constant(-10000.0)
attention_mask = tf.cast(attention_mask, dtype=one_cst.dtype)
attention_mask = tf.multiply(tf.subtract(one_cst, attention_mask), ten_thousand_cst)
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# head_mask has shape n_layer x batch x n_heads x N x N
if head_mask is not None:
raise NotImplementedError
else:
head_mask = [None] * self.num_layers
if token_type_ids is not None:
token_type_ids = tf.reshape(token_type_ids, [-1, shape_list(token_type_ids)[-1]])
token_type_embeds = self.w(token_type_ids)
token_type_embeds *= tf.math.sqrt(tf.cast(self.d_model_size, dtype=token_type_embeds.dtype))
else:
token_type_embeds = tf.constant(0.0)
position_ids = tf.reshape(position_ids, [-1, shape_list(position_ids)[-1]])
if inputs_embeds is None:
check_embeddings_within_bounds(input_ids, self.w.input_dim)
inputs_embeds = self.w(input_ids)
seq_len = input_shape[-1]
mask = 1 - tf.linalg.band_part(tf.ones((seq_len, seq_len)), -1, 0)
inputs_embeds *= tf.math.sqrt(tf.cast(self.d_model_size, inputs_embeds.dtype))
pos_embeds = tf.gather(self.pos_encoding, position_ids)
pos_embeds = tf.cast(pos_embeds, dtype=token_type_embeds.dtype)
hidden_states = inputs_embeds + pos_embeds + token_type_embeds
hidden_states = self.dropout(hidden_states, training=training)
output_shape = input_shape + [shape_list(hidden_states)[-1]]
presents = () if use_cache else None
all_hidden_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
for i, (h, layer_past) in enumerate(zip(self.h, past_key_values)):
if output_hidden_states:
all_hidden_states = all_hidden_states + (tf.reshape(hidden_states, output_shape),)
outputs = h(
hidden_states,
mask,
layer_past,
attention_mask,
head_mask[i],
use_cache,
output_attentions,
training=training,
)
hidden_states, present = outputs[:2]
if use_cache:
presents = presents + (present,)
if output_attentions:
all_attentions = all_attentions + (outputs[2],)
hidden_states = self.layernorm(hidden_states)
hidden_states = tf.reshape(hidden_states, output_shape)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if output_attentions:
# let the number of heads free (-1) so we can extract attention even after head pruning
attention_output_shape = input_shape[:-1] + [-1] + shape_list(all_attentions[0])[-2:]
all_attentions = tuple(tf.reshape(t, attention_output_shape) for t in all_attentions)
if not return_dict:
return tuple(v for v in [hidden_states, presents, all_hidden_states, all_attentions] if v is not None)
return TFBaseModelOutputWithPast(
last_hidden_state=hidden_states,
past_key_values=presents,
hidden_states=all_hidden_states,
attentions=all_attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "w", None) is not None:
with tf.name_scope(self.w.name):
self.w.build(None)
if getattr(self, "layernorm", None) is not None:
with tf.name_scope(self.layernorm.name):
self.layernorm.build([None, None, self.config.n_embd])
if getattr(self, "h", None) is not None:
for layer in self.h:
with tf.name_scope(layer.name):
layer.build(None)
class TFCTRLPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = CTRLConfig
base_model_prefix = "transformer"
CTRL_START_DOCSTRING = r"""
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a [tf.keras.Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model) subclass. Use it
as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to general usage and
behavior.
<Tip>
TensorFlow models and layers in `transformers` accept two formats as input:
- having all inputs as keyword arguments (like PyTorch models), or
- having all inputs as a list, tuple or dict in the first positional argument.
The reason the second format is supported is that Keras methods prefer this format when passing inputs to models
and layers. Because of this support, when using methods like `model.fit()` things should "just work" for you - just
pass your inputs and labels in any format that `model.fit()` supports! If, however, you want to use the second
format outside of Keras methods like `fit()` and `predict()`, such as when creating your own layers or models with
the Keras `Functional` API, there are three possibilities you can use to gather all the input Tensors in the first
positional argument:
- a single Tensor with `input_ids` only and nothing else: `model(input_ids)`
- a list of varying length with one or several input Tensors IN THE ORDER given in the docstring:
`model([input_ids, attention_mask])` or `model([input_ids, attention_mask, token_type_ids])`
- a dictionary with one or several input Tensors associated to the input names given in the docstring:
`model({"input_ids": input_ids, "token_type_ids": token_type_ids})`
Note that when creating models and layers with
[subclassing](https://keras.io/guides/making_new_layers_and_models_via_subclassing/) then you don't need to worry
about any of this, as you can just pass inputs like you would to any other Python function!
</Tip>
Parameters:
config ([`CTRLConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
CTRL_INPUTS_DOCSTRING = r"""
Args:
input_ids (`Numpy array` or `tf.Tensor` of shape `(batch_size, input_ids_length)`):
`input_ids_length` = `sequence_length` if `past` is `None` else `past[0].shape[-2]` (`sequence_length` of
input past key value states).
Indices of input sequence tokens in the vocabulary.
If `past` is used, only input IDs that do not have their past calculated should be passed as `input_ids`.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.__call__`] and
[`PreTrainedTokenizer.encode`] for details.
[What are input IDs?](../glossary#input-ids)
past (`List[tf.Tensor]` of length `config.n_layers`):
Contains pre-computed hidden-states (key and values in the attention blocks) as computed by the model (see
`past` output below). Can be used to speed up sequential decoding. The token ids which have their past
given to this model should not be passed as input ids as they have already been computed.
attention_mask (`tf.Tensor` or `Numpy array` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
token_type_ids (`tf.Tensor` or `Numpy array` of shape `(batch_size, sequence_length)`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`tf.Tensor` or `Numpy array` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`tf.Tensor` or `Numpy array` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
use_cache (`bool`, *optional*):
If set to `True`, `past` key value states are returned and can be used to speed up decoding (see `past`).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail. This argument can be used only in eager mode, in graph mode the value in the
config will be used instead.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail. This argument can be used only in eager mode, in graph mode the value in the config will be
used instead.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple. This argument can be used in
eager mode, in graph mode the value will always be set to True.
training (`bool`, *optional*, defaults to `False`):
Whether or not to use the model in training mode (some modules like dropout modules have different
behaviors between training and evaluation).
"""
@add_start_docstrings(
"The bare CTRL Model transformer outputting raw hidden-states without any specific head on top.",
CTRL_START_DOCSTRING,
)
class TFCTRLModel(TFCTRLPreTrainedModel):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFCTRLMainLayer(config, name="transformer")
@unpack_inputs
@add_start_docstrings_to_model_forward(CTRL_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFBaseModelOutputWithPast,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[Tuple, TFBaseModelOutputWithPast]:
outputs = self.transformer(
input_ids=input_ids,
past_key_values=past_key_values,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
class TFCTRLBiasLayer(tf.keras.layers.Layer):
"""
Bias as a layer. It is used for serialization purposes: `tf.keras.Model.save_weights` stores on a per-layer basis,
so all weights have to be registered in a layer.
"""
def __init__(self, shape, initializer, trainable, name, **kwargs):
super().__init__(name=name, **kwargs)
self.shape = shape
self.initializer = initializer
self.trainable = trainable
def build(self, input_shape):
self.bias = self.add_weight(
name="bias", shape=self.shape, initializer=self.initializer, trainable=self.trainable
)
super().build(input_shape)
def call(self, x):
return x + self.bias
@add_start_docstrings(
"""
The CTRL Model transformer with a language modeling head on top (linear layer with weights tied to the input
embeddings).
""",
CTRL_START_DOCSTRING,
)
class TFCTRLLMHeadModel(TFCTRLPreTrainedModel, TFCausalLanguageModelingLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFCTRLMainLayer(config, name="transformer")
self.bias_layer = TFCTRLBiasLayer(
name="lm_head", shape=[1, config.vocab_size], initializer="zeros", trainable=True
)
def get_output_embeddings(self):
return self.get_input_embeddings()
def set_output_embeddings(self, value):
self.set_input_embeddings(value)
def get_bias(self):
return {"lm_head.bias": self.bias_layer.bias}
def set_bias(self, value):
# Replaces the existing layers containing bias for correct (de)serialization.
vocab_size = value["lm_head.bias"].shape[-1]
self.bias_layer = TFCTRLBiasLayer(
name="final_logits_bias", shape=[1, vocab_size], initializer="zeros", trainable=True
)
self.bias_layer.build(None)
self.bias_layer.bias.assign(value["lm_head.bias"])
# Copied from transformers.models.gpt2.modeling_tf_gpt2.TFGPT2LMHeadModel.prepare_inputs_for_generation
def prepare_inputs_for_generation(self, inputs, past_key_values=None, use_cache=None, **kwargs):
token_type_ids = kwargs.get("token_type_ids", None)
# only last token for inputs_ids if past is defined in kwargs
if past_key_values:
inputs = tf.expand_dims(inputs[:, -1], -1)
if token_type_ids is not None:
token_type_ids = tf.expand_dims(token_type_ids[:, -1], -1)
position_ids = kwargs.get("position_ids", None)
attention_mask = kwargs.get("attention_mask", None)
if attention_mask is not None and position_ids is None:
position_ids = tf.math.cumsum(attention_mask, axis=-1, exclusive=True)
if past_key_values:
position_ids = tf.expand_dims(position_ids[:, -1], -1)
return {
"input_ids": inputs,
"attention_mask": attention_mask,
"position_ids": position_ids,
"past_key_values": past_key_values,
"use_cache": use_cache,
"token_type_ids": token_type_ids,
}
@unpack_inputs
@add_start_docstrings_to_model_forward(CTRL_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFCausalLMOutputWithPast,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[Tuple, TFCausalLMOutputWithPast]:
r"""
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the cross entropy classification loss. Indices should be in `[0, ...,
config.vocab_size - 1]`.
"""
transformer_outputs = self.transformer(
input_ids=input_ids,
past_key_values=past_key_values,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
hidden_states = transformer_outputs[0]
logits = tf.matmul(hidden_states, self.transformer.w.weights, transpose_b=True)
logits = self.bias_layer(logits)
loss = None
if labels is not None:
# shift labels to the left and cut last logit token
shifted_logits = logits[:, :-1]
labels = labels[:, 1:]
loss = self.hf_compute_loss(labels, shifted_logits)
if not return_dict:
output = (logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFCausalLMOutputWithPast(
loss=loss,
logits=logits,
past_key_values=transformer_outputs.past_key_values,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
if getattr(self, "bias_layer", None) is not None:
with tf.name_scope(self.bias_layer.name):
self.bias_layer.build(None)
@add_start_docstrings(
"""
The CTRL Model transformer with a sequence classification head on top (linear layer).
[`TFCTRLForSequenceClassification`] uses the last token in order to do the classification, as other causal models
(e.g. GPT-1, GPT-2) do.
Since it does classification on the last token, it requires to know the position of the last token. If a
`pad_token_id` is defined in the configuration, it finds the last token that is not a padding token in each row. If
no `pad_token_id` is defined, it simply takes the last value in each row of the batch. Since it cannot guess the
padding tokens when `inputs_embeds` are passed instead of `input_ids`, it does the same (take the last value in
each row of the batch).
""",
CTRL_START_DOCSTRING,
)
class TFCTRLForSequenceClassification(TFCTRLPreTrainedModel, TFSequenceClassificationLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.classifier = tf.keras.layers.Dense(
config.num_labels,
kernel_initializer=get_initializer(config.initializer_range),
name="classifier",
use_bias=False,
)
self.transformer = TFCTRLMainLayer(config, name="transformer")
self.config = config
def get_output_embeddings(self):
# Remove after transformers v4.32. Fix this model's `test_model_common_attributes` test too.
logger.warning(
"Sequence classification models do not have output embeddings. `.get_output_embeddings` will be removed "
"in transformers v4.32."
)
return self.transformer.w
@unpack_inputs
@add_start_docstrings_to_model_forward(CTRL_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFSequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[Tuple, TFSequenceClassifierOutput]:
r"""
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the cross entropy classification loss. Indices should be in `[0, ...,
config.vocab_size - 1]`.
"""
transformer_outputs = self.transformer(
input_ids=input_ids,
past_key_values=past_key_values,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
hidden_states = transformer_outputs[0]
logits = self.classifier(hidden_states)
in_logits = None
if self.config.pad_token_id is None:
sequence_lengths = -1
else:
if input_ids is not None:
sequence_lengths = (
tf.argmax(tf.cast(tf.math.equal(input_ids, self.config.pad_token_id), input_ids.dtype), axis=-1)
- 1
)
sequence_lengths = tf.where(sequence_lengths >= 0, sequence_lengths, input_ids.shape[-1] - 1)
in_logits = tf.gather(logits, sequence_lengths, batch_dims=1, axis=1)
else:
sequence_lengths = -1
logger.warning(
f"{self.__class__.__name__} will not detect padding tokens in `inputs_embeds`. Results may be "
"unexpected if using padding tokens in conjunction with `inputs_embeds.`"
)
loss = None
if labels is not None:
if input_ids is not None:
batch_size, sequence_length = shape_list(input_ids)[:2]
else:
batch_size, sequence_length = shape_list(inputs_embeds)[:2]
if self.config.pad_token_id is None and batch_size != 1:
raise ValueError("Cannot handle batch sizes > 1 if no padding token is defined.")
if not tf.is_tensor(sequence_lengths):
in_logits = logits[0:batch_size, sequence_lengths]
loss = self.hf_compute_loss(tf.reshape(labels, [-1, 1]), tf.reshape(in_logits, [-1, self.num_labels]))
pooled_logits = in_logits if in_logits is not None else logits
if not return_dict:
output = (pooled_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFSequenceClassifierOutput(
loss=loss,
logits=pooled_logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "classifier", None) is not None:
with tf.name_scope(self.classifier.name):
self.classifier.build([None, None, self.config.n_embd])
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/ctrl/configuration_ctrl.py | # coding=utf-8
# Copyright 2018 Salesforce and HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Salesforce CTRL configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
CTRL_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"Salesforce/ctrl": "https://huggingface.co/Salesforce/ctrl/resolve/main/config.json"
}
class CTRLConfig(PretrainedConfig):
"""
This is the configuration class to store the configuration of a [`CTRLModel`] or a [`TFCTRLModel`]. It is used to
instantiate a CTRL model according to the specified arguments, defining the model architecture. Instantiating a
configuration with the defaults will yield a similar configuration to that of the
[Salesforce/ctrl](https://huggingface.co/Salesforce/ctrl) architecture from SalesForce.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 246534):
Vocabulary size of the CTRL model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`CTRLModel`] or [`TFCTRLModel`].
n_positions (`int`, *optional*, defaults to 256):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
n_embd (`int`, *optional*, defaults to 1280):
Dimensionality of the embeddings and hidden states.
dff (`int`, *optional*, defaults to 8192):
Dimensionality of the inner dimension of the feed forward networks (FFN).
n_layer (`int`, *optional*, defaults to 48):
Number of hidden layers in the Transformer encoder.
n_head (`int`, *optional*, defaults to 16):
Number of attention heads for each attention layer in the Transformer encoder.
resid_pdrop (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
embd_pdrop (`int`, *optional*, defaults to 0.1):
The dropout ratio for the embeddings.
layer_norm_epsilon (`float`, *optional*, defaults to 1e-06):
The epsilon to use in the layer normalization layers
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models).
Examples:
```python
>>> from transformers import CTRLConfig, CTRLModel
>>> # Initializing a CTRL configuration
>>> configuration = CTRLConfig()
>>> # Initializing a model (with random weights) from the configuration
>>> model = CTRLModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "ctrl"
keys_to_ignore_at_inference = ["past_key_values"]
attribute_map = {
"max_position_embeddings": "n_positions",
"hidden_size": "n_embd",
"num_attention_heads": "n_head",
"num_hidden_layers": "n_layer",
}
def __init__(
self,
vocab_size=246534,
n_positions=256,
n_embd=1280,
dff=8192,
n_layer=48,
n_head=16,
resid_pdrop=0.1,
embd_pdrop=0.1,
layer_norm_epsilon=1e-6,
initializer_range=0.02,
use_cache=True,
**kwargs,
):
self.vocab_size = vocab_size
self.n_positions = n_positions
self.n_embd = n_embd
self.n_layer = n_layer
self.n_head = n_head
self.dff = dff
self.resid_pdrop = resid_pdrop
self.embd_pdrop = embd_pdrop
self.layer_norm_epsilon = layer_norm_epsilon
self.initializer_range = initializer_range
self.use_cache = use_cache
super().__init__(**kwargs)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/persimmon/configuration_persimmon.py | # coding=utf-8
# Copyright 2023 Adept AI and the HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Persimmon model configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
PERSIMMON_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"adept/persimmon-8b-base": "https://huggingface.co/adept/persimmon-8b-base/resolve/main/config.json",
}
class PersimmonConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`PersimmonModel`]. It is used to instantiate an
Persimmon model according to the specified arguments, defining the model architecture. Instantiating a
configuration with the defaults will yield a similar configuration to that of the
[adept/persimmon-8b-base](https://huggingface.co/adept/persimmon-8b-base).
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 262144):
Vocabulary size of the Persimmon model. Defines the number of different tokens that can be represented by
the `inputs_ids` passed when calling [`PersimmonModel`]
hidden_size (`int`, *optional*, defaults to 4096):
Dimension of the hidden representations.
intermediate_size (`int`, *optional*, defaults to 16384):
Dimension of the MLP representations.
num_hidden_layers (`int`, *optional*, defaults to 36):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 64):
Number of attention heads for each attention layer in the Transformer encoder.
hidden_act (`str` or `function`, *optional*, defaults to `"relu2"`):
The non-linear activation function (function or string) in the decoder.
max_position_embeddings (`int`, *optional*, defaults to 16384):
The maximum sequence length that this model might ever be used with.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-5):
The epsilon used by the rms normalization layers.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models). Only
relevant if `config.is_decoder=True`.
tie_word_embeddings(`bool`, *optional*, defaults to `False`):
Whether to tie weight embeddings
rope_theta (`float`, *optional*, defaults to 25000.0):
The base period of the RoPE embeddings.
rope_scaling (`Dict`, *optional*):
Dictionary containing the scaling configuration for the RoPE embeddings. Currently supports two scaling
strategies: linear and dynamic. Their scaling factor must be a float greater than 1. The expected format is
`{"type": strategy name, "factor": scaling factor}`. When using this flag, don't update
`max_position_embeddings` to the expected new maximum. See the following thread for more information on how
these scaling strategies behave:
https://www.reddit.com/r/LocalPersimmon/comments/14mrgpr/dynamically_scaled_rope_further_increases/. This
is an experimental feature, subject to breaking API changes in future versions.
qk_layernorm (`bool`, *optional*, default to `True`):
Whether or not to normalize the Queries and Keys after projecting the hidden states
hidden_dropout (`float`, *optional*, default to 0.0):
The dropout ratio after applying the MLP to the hidden states.
attention_dropout (`float`, *optional*, default to 0.0):
The dropout ratio after computing the attention scores.
partial_rotary_factor (`float`, *optional*, default to 0.5):
Percentage of the query and keys which will have rotary embedding.
Example:
```python
>>> from transformers import PersimmonModel, PersimmonConfig
>>> # Initializing a Persimmon persimmon-7b style configuration
>>> configuration = PersimmonConfig()
```"""
model_type = "persimmon"
keys_to_ignore_at_inference = ["past_key_values"]
def __init__(
self,
vocab_size=262144,
hidden_size=4096,
intermediate_size=16384,
num_hidden_layers=36,
num_attention_heads=64,
hidden_act="relu2",
max_position_embeddings=16384,
initializer_range=0.02,
layer_norm_eps=1e-5,
use_cache=True,
tie_word_embeddings=False,
rope_theta=25000.0,
rope_scaling=None,
qk_layernorm=True,
hidden_dropout=0.0,
attention_dropout=0.0,
partial_rotary_factor=0.5,
pad_token_id=None,
bos_token_id=1,
eos_token_id=2,
**kwargs,
):
self.vocab_size = vocab_size
self.max_position_embeddings = max_position_embeddings
self.hidden_size = hidden_size
self.intermediate_size = intermediate_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.hidden_act = hidden_act
self.initializer_range = initializer_range
self.layer_norm_eps = layer_norm_eps
self.use_cache = use_cache
self.rope_theta = rope_theta
self.rope_scaling = rope_scaling
self.qk_layernorm = qk_layernorm
self.hidden_dropout = hidden_dropout
self.attention_dropout = attention_dropout
self.partial_rotary_factor = partial_rotary_factor
self._rope_scaling_validation()
super().__init__(
pad_token_id=pad_token_id,
bos_token_id=bos_token_id,
eos_token_id=eos_token_id,
tie_word_embeddings=tie_word_embeddings,
**kwargs,
)
# Copied from transformers.models.llama.configuration_llama.LlamaConfig._rope_scaling_validation
def _rope_scaling_validation(self):
"""
Validate the `rope_scaling` configuration.
"""
if self.rope_scaling is None:
return
if not isinstance(self.rope_scaling, dict) or len(self.rope_scaling) != 2:
raise ValueError(
"`rope_scaling` must be a dictionary with with two fields, `type` and `factor`, "
f"got {self.rope_scaling}"
)
rope_scaling_type = self.rope_scaling.get("type", None)
rope_scaling_factor = self.rope_scaling.get("factor", None)
if rope_scaling_type is None or rope_scaling_type not in ["linear", "dynamic"]:
raise ValueError(
f"`rope_scaling`'s type field must be one of ['linear', 'dynamic'], got {rope_scaling_type}"
)
if rope_scaling_factor is None or not isinstance(rope_scaling_factor, float) or rope_scaling_factor <= 1.0:
raise ValueError(f"`rope_scaling`'s factor field must be a float > 1, got {rope_scaling_factor}")
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/persimmon/__init__.py | # Copyright 2023 AdeptAI and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_torch_available,
)
_import_structure = {
"configuration_persimmon": ["PERSIMMON_PRETRAINED_CONFIG_ARCHIVE_MAP", "PersimmonConfig"],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_persimmon"] = [
"PersimmonForCausalLM",
"PersimmonModel",
"PersimmonPreTrainedModel",
"PersimmonForSequenceClassification",
]
if TYPE_CHECKING:
from .configuration_persimmon import PERSIMMON_PRETRAINED_CONFIG_ARCHIVE_MAP, PersimmonConfig
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_persimmon import (
PersimmonForCausalLM,
PersimmonForSequenceClassification,
PersimmonModel,
PersimmonPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/persimmon/convert_persimmon_weights_to_hf.py | # Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import argparse
import os
import warnings
import flatdict
import torch
from transformers import LlamaTokenizer, PersimmonConfig, PersimmonForCausalLM
try:
from transformers import LlamaTokenizerFast
tokenizer_class = LlamaTokenizerFast
except ImportError as e:
warnings.warn(e)
warnings.warn(
"The converted tokenizer will be the `slow` tokenizer. To use the fast, update your `tokenizers` library and re-run the tokenizer conversion"
)
tokenizer_class = LlamaTokenizer
"""
Sample usage:
```
git clone https://github.com/persimmon-ai-labs/adept-inference
wget https://axtkn4xl5cip.objectstorage.us-phoenix-1.oci.customer-oci.com/n/axtkn4xl5cip/b/adept-public-data/o/8b_base_model_release.tar
wget https://axtkn4xl5cip.objectstorage.us-phoenix-1.oci.customer-oci.com/n/axtkn4xl5cip/b/adept-public-data/o/8b_chat_model_release.tar
python src/transformers/models/persimmon/convert_persimmon_weights_to_hf.py --input_dir /path/to/downloaded/persimmon/weights/ --output_dir /output/path
```
Thereafter, models can be loaded via:
```py
from transformers import PersimmonForCausalLM, PersimmonTokenizer
model = PersimmonForCausalLM.from_pretrained("/output/path")
tokenizer = PersimmonTokenizer.from_pretrained("/output/path")
```
Important note: you need to be able to host the whole model in RAM to execute this script (even if the biggest versions
come in several checkpoints they each contain a part of each weight of the model, so we need to load them all in RAM).
"""
KEYS_TO_MODIFY_MAPPING = {
"self_attention": "self_attn",
"language_model.encoder": "model",
"word_embeddings_for_head": "lm_head",
"language_model.embedding.word_embeddings": "model.embed_tokens",
}
KEYS_TO_REMOVE = "rotary_emb.inv_freq"
def rename_state_dict(state_dict):
model_state_dict = {}
for key, value in state_dict.items():
for key_to_modify, new_key in KEYS_TO_MODIFY_MAPPING.items():
if key_to_modify in key:
key = key.replace(key_to_modify, new_key)
if KEYS_TO_REMOVE in key:
continue
model_state_dict[key] = value
return model_state_dict
def convert_persimmon_checkpoint(pytorch_dump_folder_path, ada_lib_path, pt_model_path, safe_serialization=False):
import sys
sys.path.insert(0, ada_lib_path)
model_state_dict_base = torch.load(pt_model_path, map_location="cpu")
state_dict = flatdict.FlatDict(model_state_dict_base["model"], ".")
state_dict = rename_state_dict(state_dict)
transformers_config = PersimmonConfig()
model = PersimmonForCausalLM(transformers_config, eos_token_id=71013, bos_token_id=71013).to(torch.bfloat16)
model.load_state_dict(state_dict)
model.save_pretrained(pytorch_dump_folder_path, safe_serialization=safe_serialization)
transformers_config.save_pretrained(pytorch_dump_folder_path)
def main():
parser = argparse.ArgumentParser()
parser.add_argument(
"--input_dir",
help="Location of Persimmon weights, which contains tokenizer.model and model folders",
)
parser.add_argument(
"--pt_model_path",
help="Location of Persimmon `model_optim_rng.pt`",
)
parser.add_argument(
"--output_dir",
help="Location to write HF model and tokenizer",
)
parser.add_argument(
"--ada_lib_path",
help="Location to write HF model and tokenizer",
)
parser.add_argument("--safe_serialization", type=bool, help="Whether or not to save using `safetensors`.")
args = parser.parse_args()
spm_path = os.path.join(args.input_dir, "adept_vocab.model")
convert_persimmon_checkpoint(
pytorch_dump_folder_path=args.output_dir,
pt_model_path=args.pt_model_path,
safe_serialization=args.safe_serialization,
ada_lib_path=args.ada_lib_path,
)
tokenizer = tokenizer_class(spm_path, bos_token="|ENDOFTEXT|", eos_token="|ENDOFTEXT|")
tokenizer.save_pretrained(args.output_dir)
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/persimmon/modeling_persimmon.py | # coding=utf-8
# Copyright 2023 EleutherAI and the HuggingFace Inc. team. All rights reserved.
#
# This code is based on EleutherAI's GPT-NeoX library and the GPT-NeoX
# and OPT implementations in this library. It has been modified from its
# original forms to accommodate minor architectural differences compared
# to GPT-NeoX and OPT used by the Meta AI team that trained the model.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch Persimmon model."""
import math
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...cache_utils import Cache, DynamicCache
from ...modeling_attn_mask_utils import _prepare_4d_causal_attention_mask
from ...modeling_outputs import BaseModelOutputWithPast, CausalLMOutputWithPast, SequenceClassifierOutputWithPast
from ...modeling_utils import PreTrainedModel
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_persimmon import PersimmonConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "PersimmonConfig"
# Copied from transformers.models.llama.modeling_llama.LlamaRotaryEmbedding with Llama->Persimmon
class PersimmonRotaryEmbedding(nn.Module):
def __init__(self, dim, max_position_embeddings=2048, base=10000, device=None):
super().__init__()
self.dim = dim
self.max_position_embeddings = max_position_embeddings
self.base = base
inv_freq = 1.0 / (self.base ** (torch.arange(0, self.dim, 2).float().to(device) / self.dim))
self.register_buffer("inv_freq", inv_freq, persistent=False)
# Build here to make `torch.jit.trace` work.
self._set_cos_sin_cache(
seq_len=max_position_embeddings, device=self.inv_freq.device, dtype=torch.get_default_dtype()
)
def _set_cos_sin_cache(self, seq_len, device, dtype):
self.max_seq_len_cached = seq_len
t = torch.arange(self.max_seq_len_cached, device=device, dtype=self.inv_freq.dtype)
freqs = torch.outer(t, self.inv_freq)
# Different from paper, but it uses a different permutation in order to obtain the same calculation
emb = torch.cat((freqs, freqs), dim=-1)
self.register_buffer("cos_cached", emb.cos().to(dtype), persistent=False)
self.register_buffer("sin_cached", emb.sin().to(dtype), persistent=False)
def forward(self, x, seq_len=None):
# x: [bs, num_attention_heads, seq_len, head_size]
if seq_len > self.max_seq_len_cached:
self._set_cos_sin_cache(seq_len=seq_len, device=x.device, dtype=x.dtype)
return (
self.cos_cached[:seq_len].to(dtype=x.dtype),
self.sin_cached[:seq_len].to(dtype=x.dtype),
)
# Copied from transformers.models.llama.modeling_llama.LlamaLinearScalingRotaryEmbedding with Llama->Persimmon
class PersimmonLinearScalingRotaryEmbedding(PersimmonRotaryEmbedding):
"""PersimmonRotaryEmbedding extended with linear scaling. Credits to the Reddit user /u/kaiokendev"""
def __init__(self, dim, max_position_embeddings=2048, base=10000, device=None, scaling_factor=1.0):
self.scaling_factor = scaling_factor
super().__init__(dim, max_position_embeddings, base, device)
def _set_cos_sin_cache(self, seq_len, device, dtype):
self.max_seq_len_cached = seq_len
t = torch.arange(self.max_seq_len_cached, device=device, dtype=self.inv_freq.dtype)
t = t / self.scaling_factor
freqs = torch.outer(t, self.inv_freq)
# Different from paper, but it uses a different permutation in order to obtain the same calculation
emb = torch.cat((freqs, freqs), dim=-1)
self.register_buffer("cos_cached", emb.cos().to(dtype), persistent=False)
self.register_buffer("sin_cached", emb.sin().to(dtype), persistent=False)
# Copied from transformers.models.llama.modeling_llama.LlamaDynamicNTKScalingRotaryEmbedding with Llama->Persimmon
class PersimmonDynamicNTKScalingRotaryEmbedding(PersimmonRotaryEmbedding):
"""PersimmonRotaryEmbedding extended with Dynamic NTK scaling. Credits to the Reddit users /u/bloc97 and /u/emozilla"""
def __init__(self, dim, max_position_embeddings=2048, base=10000, device=None, scaling_factor=1.0):
self.scaling_factor = scaling_factor
super().__init__(dim, max_position_embeddings, base, device)
def _set_cos_sin_cache(self, seq_len, device, dtype):
self.max_seq_len_cached = seq_len
if seq_len > self.max_position_embeddings:
base = self.base * (
(self.scaling_factor * seq_len / self.max_position_embeddings) - (self.scaling_factor - 1)
) ** (self.dim / (self.dim - 2))
inv_freq = 1.0 / (base ** (torch.arange(0, self.dim, 2).float().to(device) / self.dim))
self.register_buffer("inv_freq", inv_freq, persistent=False)
t = torch.arange(self.max_seq_len_cached, device=device, dtype=self.inv_freq.dtype)
freqs = torch.outer(t, self.inv_freq)
# Different from paper, but it uses a different permutation in order to obtain the same calculation
emb = torch.cat((freqs, freqs), dim=-1)
self.register_buffer("cos_cached", emb.cos().to(dtype), persistent=False)
self.register_buffer("sin_cached", emb.sin().to(dtype), persistent=False)
# Copied from transformers.models.llama.modeling_llama.rotate_half
def rotate_half(x):
"""Rotates half the hidden dims of the input."""
x1 = x[..., : x.shape[-1] // 2]
x2 = x[..., x.shape[-1] // 2 :]
return torch.cat((-x2, x1), dim=-1)
# Copied from transformers.models.llama.modeling_llama.apply_rotary_pos_emb
def apply_rotary_pos_emb(q, k, cos, sin, position_ids, unsqueeze_dim=1):
"""Applies Rotary Position Embedding to the query and key tensors.
Args:
q (`torch.Tensor`): The query tensor.
k (`torch.Tensor`): The key tensor.
cos (`torch.Tensor`): The cosine part of the rotary embedding.
sin (`torch.Tensor`): The sine part of the rotary embedding.
position_ids (`torch.Tensor`):
The position indices of the tokens corresponding to the query and key tensors. For example, this can be
used to pass offsetted position ids when working with a KV-cache.
unsqueeze_dim (`int`, *optional*, defaults to 1):
The 'unsqueeze_dim' argument specifies the dimension along which to unsqueeze cos[position_ids] and
sin[position_ids] so that they can be properly broadcasted to the dimensions of q and k. For example, note
that cos[position_ids] and sin[position_ids] have the shape [batch_size, seq_len, head_dim]. Then, if q and
k have the shape [batch_size, heads, seq_len, head_dim], then setting unsqueeze_dim=1 makes
cos[position_ids] and sin[position_ids] broadcastable to the shapes of q and k. Similarly, if q and k have
the shape [batch_size, seq_len, heads, head_dim], then set unsqueeze_dim=2.
Returns:
`tuple(torch.Tensor)` comprising of the query and key tensors rotated using the Rotary Position Embedding.
"""
cos = cos[position_ids].unsqueeze(unsqueeze_dim)
sin = sin[position_ids].unsqueeze(unsqueeze_dim)
q_embed = (q * cos) + (rotate_half(q) * sin)
k_embed = (k * cos) + (rotate_half(k) * sin)
return q_embed, k_embed
# Copied from transformers.models.gpt_neox.modeling_gpt_neox.GPTNeoXMLP with GPTNeoX->Persimmon
class PersimmonMLP(nn.Module):
def __init__(self, config):
super().__init__()
self.dense_h_to_4h = nn.Linear(config.hidden_size, config.intermediate_size)
self.dense_4h_to_h = nn.Linear(config.intermediate_size, config.hidden_size)
self.act = ACT2FN[config.hidden_act]
def forward(self, hidden_states):
hidden_states = self.dense_h_to_4h(hidden_states)
hidden_states = self.act(hidden_states)
hidden_states = self.dense_4h_to_h(hidden_states)
return hidden_states
class PersimmonAttention(nn.Module):
"""Multi-headed attention from 'Attention Is All You Need' paper"""
def __init__(self, config: PersimmonConfig, layer_idx: Optional[int] = None):
super().__init__()
self.config = config
self.layer_idx = layer_idx
if layer_idx is None:
logger.warning_once(
f"Instantiating {self.__class__.__name__} without passing a `layer_idx` is not recommended and will "
"lead to errors during the forward call if caching is used. Please make sure to provide a `layer_idx` "
"when creating this class."
)
self.hidden_size = config.hidden_size
self.num_heads = config.num_attention_heads
self.head_dim = self.hidden_size // self.num_heads
self.max_position_embeddings = config.max_position_embeddings
self.rope_theta = config.rope_theta
self.partial_rotary_factor = config.partial_rotary_factor
self.is_causal = True
if (self.head_dim * self.num_heads) != self.hidden_size:
raise ValueError(
f"hidden_size must be divisible by num_heads (got `hidden_size`: {self.hidden_size}"
f" and `num_heads`: {self.num_heads})."
)
self.query_key_value = nn.Linear(self.hidden_size, 3 * self.hidden_size, bias=True)
self.dense = nn.Linear(self.num_heads * self.head_dim, self.hidden_size, bias=True)
self.qk_layernorm = config.qk_layernorm
if self.qk_layernorm:
self.q_layernorm = nn.LayerNorm(
config.hidden_size // self.num_heads, eps=config.layer_norm_eps, elementwise_affine=True
)
self.k_layernorm = nn.LayerNorm(
config.hidden_size // self.num_heads, eps=config.layer_norm_eps, elementwise_affine=True
)
self.attention_dropout = nn.Dropout(config.attention_dropout)
self._init_rope()
def _init_rope(self):
if self.config.rope_scaling is None:
self.rotary_emb = PersimmonRotaryEmbedding(
int(self.partial_rotary_factor * self.head_dim),
max_position_embeddings=self.max_position_embeddings,
base=self.rope_theta,
)
else:
scaling_type = self.config.rope_scaling["type"]
scaling_factor = self.config.rope_scaling["factor"]
if scaling_type == "linear":
self.rotary_emb = PersimmonLinearScalingRotaryEmbedding(
int(self.partial_rotary_factor * self.head_dim),
max_position_embeddings=self.max_position_embeddings,
scaling_factor=scaling_factor,
base=self.rope_theta,
)
elif scaling_type == "dynamic":
self.rotary_emb = PersimmonDynamicNTKScalingRotaryEmbedding(
int(self.partial_rotary_factor * self.head_dim),
max_position_embeddings=self.max_position_embeddings,
scaling_factor=scaling_factor,
base=self.rope_theta,
)
else:
raise ValueError(f"Unknown RoPE scaling type {scaling_type}")
# Copied from transformers.models.bloom.modeling_bloom.BloomAttention._split_heads
def _split_heads(self, fused_qkv: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor, torch.Tensor]:
"""
Split the last dimension into (num_heads, head_dim) without making any copies, results share same memory
storage as `fused_qkv`
Args:
fused_qkv (`torch.tensor`, *required*): [batch_size, seq_length, num_heads * 3 * head_dim]
Returns:
query: [batch_size, seq_length, num_heads, head_dim] key: [batch_size, seq_length, num_heads, head_dim]
value: [batch_size, seq_length, num_heads, head_dim]
"""
batch_size, seq_length, three_times_hidden_size = fused_qkv.shape
fused_qkv = fused_qkv.view(batch_size, seq_length, self.num_heads, 3, self.head_dim)
return fused_qkv[..., 0, :], fused_qkv[..., 1, :], fused_qkv[..., 2, :]
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_value: Optional[Cache] = None,
output_attentions: bool = False,
use_cache: bool = False,
) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
bsz, q_len, _ = hidden_states.size()
# [batch_size, seq_length, 3 x hidden_size]
fused_qkv = self.query_key_value(hidden_states)
# 3 x [batch_size, seq_length, num_heads, head_dim]
(query_states, key_states, value_states) = self._split_heads(fused_qkv)
if self.qk_layernorm:
query_states = self.q_layernorm(query_states)
key_states = self.k_layernorm(key_states)
# [batch_size, num_heads, seq_length, head_dim] -> [batch_size, seq_length, num_heads, head_dim]
query_states = query_states.transpose(1, 2)
value_states = value_states.transpose(1, 2)
key_states = key_states.transpose(1, 2)
kv_seq_len = key_states.shape[-2]
if past_key_value is not None:
if self.layer_idx is None:
raise ValueError(
f"The cache structure has changed since version v4.36. If you are using {self.__class__.__name__} "
"for auto-regressive decoding with k/v caching, please make sure to initialize the attention class "
"with a layer index."
)
kv_seq_len += past_key_value.get_usable_length(kv_seq_len, self.layer_idx)
cos, sin = self.rotary_emb(value_states, seq_len=kv_seq_len)
# Partial rotary embedding
query_rot, query_pass = (
query_states[..., : self.rotary_emb.dim],
query_states[..., self.rotary_emb.dim :],
)
key_rot, key_pass = (
key_states[..., : self.rotary_emb.dim],
key_states[..., self.rotary_emb.dim :],
)
# [batch_size, seq_length, num_heads, head_dim // config.partial_rotary_factor]
query_rot, key_rot = apply_rotary_pos_emb(query_rot, key_rot, cos, sin, position_ids)
# [batch_size, seq_length, num_heads, head_dim]
query_states = torch.cat((query_rot, query_pass), dim=-1)
key_states = torch.cat((key_rot, key_pass), dim=-1)
if past_key_value is not None:
# Specific to RoPE models with partial rotation
cache_kwargs = {"sin": sin, "cos": cos, "partial_rotation_size": self.rotary_emb.dim}
key_states, value_states = past_key_value.update(key_states, value_states, self.layer_idx, cache_kwargs)
attn_weights = torch.matmul(query_states, key_states.transpose(2, 3)) / math.sqrt(self.head_dim)
if attn_weights.size() != (bsz, self.num_heads, q_len, kv_seq_len):
raise ValueError(
f"Attention weights should be of size {(bsz, self.num_heads, q_len, kv_seq_len)}, but is"
f" {attn_weights.size()}"
)
if attention_mask is not None:
if attention_mask.size() != (bsz, 1, q_len, kv_seq_len):
raise ValueError(
f"Attention mask should be of size {(bsz, 1, q_len, kv_seq_len)}, but is {attention_mask.size()}"
)
attn_weights = attn_weights + attention_mask
# upcast attention to fp32
attn_weights = nn.functional.softmax(attn_weights, dtype=torch.float32, dim=-1).to(query_states.dtype)
attn_weights = self.attention_dropout(attn_weights)
attn_output = torch.matmul(attn_weights, value_states)
if attn_output.size() != (bsz, self.num_heads, q_len, self.head_dim):
raise ValueError(
f"`attn_output` should be of size {(bsz, self.num_heads, q_len, self.head_dim)}, but is"
f" {attn_output.size()}"
)
attn_output = attn_output.transpose(1, 2).contiguous()
attn_output = attn_output.reshape(bsz, q_len, self.hidden_size)
attn_output = self.dense(attn_output)
if not output_attentions:
attn_weights = None
return attn_output, attn_weights, past_key_value
class PersimmonDecoderLayer(nn.Module):
def __init__(self, config: PersimmonConfig, layer_idx: int):
super().__init__()
self.hidden_size = config.hidden_size
self.self_attn = PersimmonAttention(config=config, layer_idx=layer_idx)
self.mlp = PersimmonMLP(config)
self.input_layernorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.post_attention_layernorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_value: Optional[Tuple[torch.Tensor]] = None,
output_attentions: Optional[bool] = False,
use_cache: Optional[bool] = False,
) -> Tuple[torch.FloatTensor, Optional[Tuple[torch.FloatTensor, torch.FloatTensor]]]:
"""
Args:
hidden_states (`torch.FloatTensor`): input to the layer of shape `(batch, seq_len, embed_dim)`
attention_mask (`torch.FloatTensor`, *optional*): attention mask of size
`(batch, 1, tgt_len, src_len)` where padding elements are indicated by very large negative values.
position_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range
`[0, config.n_positions - 1]`.
[What are position IDs?](../glossary#position-ids)
past_key_value (`Tuple(torch.FloatTensor)`, *optional*):
cached past key and value projection states
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding
(see `past_key_values`).
"""
residual = hidden_states
hidden_states = self.input_layernorm(hidden_states)
# Self Attention
hidden_states, self_attn_weights, present_key_value = self.self_attn(
hidden_states=hidden_states,
attention_mask=attention_mask,
position_ids=position_ids,
past_key_value=past_key_value,
output_attentions=output_attentions,
use_cache=use_cache,
)
hidden_states = residual + hidden_states
# Fully Connected
residual = hidden_states
hidden_states = self.post_attention_layernorm(hidden_states)
hidden_states = self.mlp(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = hidden_states + residual
outputs = (hidden_states,)
if output_attentions:
outputs += (self_attn_weights,)
if use_cache:
outputs += (present_key_value,)
return outputs
PERSIMMON_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`PersimmonConfig`]):
Model configuration class with all the parameters of the model. Initializing with a config file does not
load the weights associated with the model, only the configuration. Check out the
[`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
@add_start_docstrings(
"The bare Persimmon Model outputting raw hidden-states without any specific head on top.",
PERSIMMON_START_DOCSTRING,
)
class PersimmonPreTrainedModel(PreTrainedModel):
config_class = PersimmonConfig
base_model_prefix = "model"
supports_gradient_checkpointing = True
_no_split_modules = ["PersimmonDecoderLayer"]
_skip_keys_device_placement = "past_key_values"
_supports_cache_class = True
def _init_weights(self, module):
std = self.config.initializer_range
if isinstance(module, nn.Linear):
module.weight.data.normal_(mean=0.0, std=std)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=std)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
PERSIMMON_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
If `past_key_values` is used, optionally only the last `decoder_input_ids` have to be input (see
`past_key_values`).
If you want to change padding behavior, you should read [`modeling_opt._prepare_decoder_attention_mask`]
and modify to your needs. See diagram 1 in [the paper](https://arxiv.org/abs/1910.13461) for more
information on the default strategy.
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
position_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.n_positions - 1]`.
[What are position IDs?](../glossary#position-ids)
past_key_values (`Cache` or `tuple(tuple(torch.FloatTensor))`, *optional*):
Pre-computed hidden-states (key and values in the self-attention blocks and in the cross-attention
blocks) that can be used to speed up sequential decoding. This typically consists in the `past_key_values`
returned by the model at a previous stage of decoding, when `use_cache=True` or `config.use_cache=True`.
Two formats are allowed:
- a [`~cache_utils.Cache`] instance;
- Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of
shape `(batch_size, num_heads, sequence_length, embed_size_per_head)`). This is also known as the legacy
cache format.
The model will output the same cache format that is fed as input. If no `past_key_values` are passed, the
legacy cache format will be returned.
If `past_key_values` are used, the user can optionally input only the last `input_ids` (those that don't
have their past key value states given to this model) of shape `(batch_size, 1)` instead of all `input_ids`
of shape `(batch_size, sequence_length)`.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare Persimmon Model outputting raw hidden-states without any specific head on top.",
PERSIMMON_START_DOCSTRING,
)
class PersimmonModel(PersimmonPreTrainedModel):
"""
Transformer decoder consisting of *config.num_hidden_layers* layers. Each layer is a [`PersimmonDecoderLayer`]
Args:
config: PersimmonConfig
"""
def __init__(self, config: PersimmonConfig):
super().__init__(config)
self.padding_idx = config.pad_token_id
self.vocab_size = config.vocab_size
self.embed_tokens = nn.Embedding(config.vocab_size, config.hidden_size, self.padding_idx)
self.layers = nn.ModuleList(
[PersimmonDecoderLayer(config, layer_idx) for layer_idx in range(config.num_hidden_layers)]
)
self.final_layernorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.gradient_checkpointing = False
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.embed_tokens
def set_input_embeddings(self, value):
self.embed_tokens = value
@add_start_docstrings_to_model_forward(PERSIMMON_INPUTS_DOCSTRING)
def forward(
self,
input_ids: torch.LongTensor = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutputWithPast]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# retrieve input_ids and inputs_embeds
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both decoder_input_ids and decoder_inputs_embeds at the same time")
elif input_ids is not None:
batch_size, seq_length = input_ids.shape
elif inputs_embeds is not None:
batch_size, seq_length, _ = inputs_embeds.shape
else:
raise ValueError("You have to specify either decoder_input_ids or decoder_inputs_embeds")
seq_length_with_past = seq_length
past_key_values_length = 0
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning_once(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
if use_cache:
use_legacy_cache = not isinstance(past_key_values, Cache)
if use_legacy_cache:
past_key_values = DynamicCache.from_legacy_cache(past_key_values)
past_key_values_length = past_key_values.get_usable_length(seq_length)
seq_length_with_past = seq_length_with_past + past_key_values_length
if position_ids is None:
device = input_ids.device if input_ids is not None else inputs_embeds.device
position_ids = torch.arange(
past_key_values_length, seq_length + past_key_values_length, dtype=torch.long, device=device
)
position_ids = position_ids.unsqueeze(0)
if inputs_embeds is None:
inputs_embeds = self.embed_tokens(input_ids)
# embed positions
if attention_mask is None:
attention_mask = torch.ones(
(batch_size, seq_length_with_past), dtype=torch.bool, device=inputs_embeds.device
)
attention_mask = _prepare_4d_causal_attention_mask(
attention_mask, (batch_size, seq_length), inputs_embeds, past_key_values_length
)
hidden_states = inputs_embeds
# decoder layers
all_hidden_states = () if output_hidden_states else None
all_self_attns = () if output_attentions else None
next_decoder_cache = None
for decoder_layer in self.layers:
if output_hidden_states:
all_hidden_states += (hidden_states,)
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
decoder_layer.__call__,
hidden_states,
attention_mask,
position_ids,
past_key_values,
output_attentions,
)
else:
layer_outputs = decoder_layer(
hidden_states,
attention_mask=attention_mask,
position_ids=position_ids,
past_key_value=past_key_values,
output_attentions=output_attentions,
use_cache=use_cache,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache = layer_outputs[2 if output_attentions else 1]
if output_attentions:
all_self_attns += (layer_outputs[1],)
hidden_states = self.final_layernorm(hidden_states)
# add hidden states from the last decoder layer
if output_hidden_states:
all_hidden_states += (hidden_states,)
next_cache = None
if use_cache:
next_cache = next_decoder_cache.to_legacy_cache() if use_legacy_cache else next_decoder_cache
if not return_dict:
return tuple(v for v in [hidden_states, next_cache, all_hidden_states, all_self_attns] if v is not None)
return BaseModelOutputWithPast(
last_hidden_state=hidden_states,
past_key_values=next_cache,
hidden_states=all_hidden_states,
attentions=all_self_attns,
)
class PersimmonForCausalLM(PersimmonPreTrainedModel):
_tied_weights_keys = ["lm_head.weight"]
# Copied from transformers.models.llama.modeling_llama.LlamaForCausalLM.__init__ with LLAMA->PERSIMMON,Llama->Persimmon
def __init__(self, config):
super().__init__(config)
self.model = PersimmonModel(config)
self.vocab_size = config.vocab_size
self.lm_head = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
# Initialize weights and apply final processing
self.post_init()
# Copied from transformers.models.llama.modeling_llama.LlamaForCausalLM.get_input_embeddings
def get_input_embeddings(self):
return self.model.embed_tokens
# Copied from transformers.models.llama.modeling_llama.LlamaForCausalLM.set_input_embeddings
def set_input_embeddings(self, value):
self.model.embed_tokens = value
# Copied from transformers.models.llama.modeling_llama.LlamaForCausalLM.get_output_embeddings
def get_output_embeddings(self):
return self.lm_head
# Copied from transformers.models.llama.modeling_llama.LlamaForCausalLM.set_output_embeddings
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
# Copied from transformers.models.llama.modeling_llama.LlamaForCausalLM.set_decoder
def set_decoder(self, decoder):
self.model = decoder
# Copied from transformers.models.llama.modeling_llama.LlamaForCausalLM.get_decoder
def get_decoder(self):
return self.model
@add_start_docstrings_to_model_forward(PERSIMMON_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=CausalLMOutputWithPast, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: torch.LongTensor = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, CausalLMOutputWithPast]:
r"""
Args:
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should either be in `[0, ...,
config.vocab_size]` or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
(masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, PersimmonForCausalLM
>>> model = PersimmonForCausalLM.from_pretrained("adept/persimmon-8b-base")
>>> tokenizer = AutoTokenizer.from_pretrained("adept/persimmon-8b-base")
>>> prompt = "human: Hey, what should I eat for dinner?"
>>> inputs = tokenizer(prompt, return_tensors="pt")
>>> # Generate
>>> generate_ids = model.generate(inputs.input_ids, max_length=30)
>>> tokenizer.batch_decode(generate_ids, skip_special_tokens=True, clean_up_tokenization_spaces=False)[0]
'human: Hey, what should I eat for dinner?\n\ncat: 🐱\n\nhuman: 😐\n\n'
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# decoder outputs consists of (dec_features, layer_state, dec_hidden, dec_attn)
outputs = self.model(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0]
logits = self.lm_head(hidden_states)
loss = None
if labels is not None:
# Shift so that tokens < n predict n
shift_logits = logits[..., :-1, :].contiguous()
shift_labels = labels[..., 1:].contiguous()
# Flatten the tokens
loss_fct = CrossEntropyLoss()
shift_logits = shift_logits.view(-1, self.config.vocab_size)
shift_labels = shift_labels.view(-1)
# Enable model parallelism
shift_labels = shift_labels.to(shift_logits.device)
loss = loss_fct(shift_logits, shift_labels)
if not return_dict:
output = (logits,) + outputs[1:]
return (loss,) + output if loss is not None else output
return CausalLMOutputWithPast(
loss=loss,
logits=logits,
past_key_values=outputs.past_key_values,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
# Copied from transformers.models.llama.modeling_llama.LlamaForCausalLM.prepare_inputs_for_generation
def prepare_inputs_for_generation(
self, input_ids, past_key_values=None, attention_mask=None, inputs_embeds=None, **kwargs
):
if past_key_values is not None:
if isinstance(past_key_values, Cache):
cache_length = past_key_values.get_seq_length()
past_length = past_key_values.seen_tokens
max_cache_length = past_key_values.get_max_length()
else:
cache_length = past_length = past_key_values[0][0].shape[2]
max_cache_length = None
# Keep only the unprocessed tokens:
# 1 - If the length of the attention_mask exceeds the length of input_ids, then we are in a setting where
# some of the inputs are exclusively passed as part of the cache (e.g. when passing input_embeds as
# input)
if attention_mask is not None and attention_mask.shape[1] > input_ids.shape[1]:
input_ids = input_ids[:, -(attention_mask.shape[1] - past_length) :]
# 2 - If the past_length is smaller than input_ids', then input_ids holds all input tokens. We can discard
# input_ids based on the past_length.
elif past_length < input_ids.shape[1]:
input_ids = input_ids[:, past_length:]
# 3 - Otherwise (past_length >= input_ids.shape[1]), let's assume input_ids only has unprocessed tokens.
# If we are about to go beyond the maximum cache length, we need to crop the input attention mask.
if (
max_cache_length is not None
and attention_mask is not None
and cache_length + input_ids.shape[1] > max_cache_length
):
attention_mask = attention_mask[:, -max_cache_length:]
position_ids = kwargs.get("position_ids", None)
if attention_mask is not None and position_ids is None:
# create position_ids on the fly for batch generation
position_ids = attention_mask.long().cumsum(-1) - 1
position_ids.masked_fill_(attention_mask == 0, 1)
if past_key_values:
position_ids = position_ids[:, -input_ids.shape[1] :]
# if `inputs_embeds` are passed, we only want to use them in the 1st generation step
if inputs_embeds is not None and past_key_values is None:
model_inputs = {"inputs_embeds": inputs_embeds}
else:
model_inputs = {"input_ids": input_ids}
model_inputs.update(
{
"position_ids": position_ids,
"past_key_values": past_key_values,
"use_cache": kwargs.get("use_cache"),
"attention_mask": attention_mask,
}
)
return model_inputs
@staticmethod
def _reorder_cache(past_key_values, beam_idx):
reordered_past = ()
for layer_past in past_key_values:
reordered_past += (
tuple(past_state.index_select(0, beam_idx.to(past_state.device)) for past_state in layer_past),
)
return reordered_past
@add_start_docstrings(
"""
The Persimmon transformer with a sequence classification head on top (linear layer).
[`PersimmonForSequenceClassification`] uses the last token in order to do the classification, as other causal
models (e.g. GPT-2) do.
Since it does classification on the last token, it requires to know the position of the last token. If a
`pad_token_id` is defined in the configuration, it finds the last token that is not a padding token in each row. If
no `pad_token_id` is defined, it simply takes the last value in each row of the batch. Since it cannot guess the
padding tokens when `inputs_embeds` are passed instead of `input_ids`, it does the same (take the last value in
each row of the batch).
""",
PERSIMMON_START_DOCSTRING,
)
# Copied from transformers.models.llama.modeling_llama.LlamaForSequenceClassification with LLAMA->PERSIMMON,Llama->Persimmon
class PersimmonForSequenceClassification(PersimmonPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.model = PersimmonModel(config)
self.score = nn.Linear(config.hidden_size, self.num_labels, bias=False)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.model.embed_tokens
def set_input_embeddings(self, value):
self.model.embed_tokens = value
@add_start_docstrings_to_model_forward(PERSIMMON_INPUTS_DOCSTRING)
def forward(
self,
input_ids: torch.LongTensor = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, SequenceClassifierOutputWithPast]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.model(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = transformer_outputs[0]
logits = self.score(hidden_states)
if input_ids is not None:
batch_size = input_ids.shape[0]
else:
batch_size = inputs_embeds.shape[0]
if self.config.pad_token_id is None and batch_size != 1:
raise ValueError("Cannot handle batch sizes > 1 if no padding token is defined.")
if self.config.pad_token_id is None:
sequence_lengths = -1
else:
if input_ids is not None:
# if no pad token found, use modulo instead of reverse indexing for ONNX compatibility
sequence_lengths = torch.eq(input_ids, self.config.pad_token_id).int().argmax(-1) - 1
sequence_lengths = sequence_lengths % input_ids.shape[-1]
sequence_lengths = sequence_lengths.to(logits.device)
else:
sequence_lengths = -1
pooled_logits = logits[torch.arange(batch_size, device=logits.device), sequence_lengths]
loss = None
if labels is not None:
labels = labels.to(logits.device)
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(pooled_logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(pooled_logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(pooled_logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(pooled_logits, labels)
if not return_dict:
output = (pooled_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutputWithPast(
loss=loss,
logits=pooled_logits,
past_key_values=transformer_outputs.past_key_values,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/esm/convert_esm.py | # coding=utf-8
# Copyright 2022 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert ESM checkpoint."""
import argparse
import pathlib
from pathlib import Path
from tempfile import TemporaryDirectory
import esm as esm_module
import torch
from esm.esmfold.v1.misc import batch_encode_sequences as esmfold_encode_sequences
from esm.esmfold.v1.pretrained import esmfold_v1
from transformers.models.esm.configuration_esm import EsmConfig, EsmFoldConfig
from transformers.models.esm.modeling_esm import (
EsmForMaskedLM,
EsmForSequenceClassification,
EsmIntermediate,
EsmLayer,
EsmOutput,
EsmSelfAttention,
EsmSelfOutput,
)
from transformers.models.esm.modeling_esmfold import EsmForProteinFolding
from transformers.models.esm.tokenization_esm import EsmTokenizer
from transformers.utils import logging
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
SAMPLE_DATA = [
(
"protein1",
"MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA",
),
("protein2", "MKTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLA"),
("protein3", "MKTVRQERLKSI<mask>RILERSKEPVSGAQLAEELS<mask>SRQVIVQDIAYLRSLGYN<mask>VATPRGYVLAGG"),
("protein4", "MKTVRQERLKSI<mask>RILERSKEPVSGAQLAEELS<mask>SRQVIVQDIAYLRSLGYN<mask>VATPRGYVLA"),
]
MODEL_MAPPING = {
"esm1b_t33_650M_UR50S": esm_module.pretrained.esm1b_t33_650M_UR50S,
"esm1v_t33_650M_UR90S_1": esm_module.pretrained.esm1v_t33_650M_UR90S_1,
"esm1v_t33_650M_UR90S_2": esm_module.pretrained.esm1v_t33_650M_UR90S_2,
"esm1v_t33_650M_UR90S_3": esm_module.pretrained.esm1v_t33_650M_UR90S_3,
"esm1v_t33_650M_UR90S_4": esm_module.pretrained.esm1v_t33_650M_UR90S_4,
"esm1v_t33_650M_UR90S_5": esm_module.pretrained.esm1v_t33_650M_UR90S_5,
"esm2_t48_15B_UR50D": esm_module.pretrained.esm2_t48_15B_UR50D,
"esm2_t36_3B_UR50D": esm_module.pretrained.esm2_t36_3B_UR50D,
"esm2_t33_650M_UR50D": esm_module.pretrained.esm2_t33_650M_UR50D,
"esm2_t30_150M_UR50D": esm_module.pretrained.esm2_t30_150M_UR50D,
"esm2_t12_35M_UR50D": esm_module.pretrained.esm2_t12_35M_UR50D,
"esm2_t6_8M_UR50D": esm_module.pretrained.esm2_t6_8M_UR50D,
"esmfold_v1": esmfold_v1,
}
restypes = list("ARNDCQEGHILKMFPSTWYV")
restypes_with_x = restypes + ["X"]
restypes_with_extras = restypes_with_x + ["<pad>", "<mask>", "<cls>", "<sep>", "<eos>"]
def get_esmfold_tokenizer():
with TemporaryDirectory() as tempdir:
vocab = "\n".join(restypes_with_extras)
vocab_file = Path(tempdir) / "vocab.txt"
vocab_file.write_text(vocab)
hf_tokenizer = EsmTokenizer(vocab_file=str(vocab_file))
hf_tokenizer.pad_token_id = 0 # Overlaps with 'A' but that seems to be what they want
return hf_tokenizer
def transfer_and_check_weights(original_module, our_module):
status = our_module.load_state_dict(original_module.state_dict())
if status.missing_keys:
raise ValueError(f"Missing keys: {status.missing_keys}")
if status.unexpected_keys:
raise ValueError(f"Unexpected keys: {status.unexpected_keys}")
def convert_esm_checkpoint_to_pytorch(
model: str, pytorch_dump_folder_path: str, classification_head: bool, push_to_repo: str, auth_token: str
):
"""
Copy/paste/tweak esm's weights to our BERT structure.
"""
if model.startswith("esmfold"):
esm = MODEL_MAPPING[model]()
else:
esm, alphabet = MODEL_MAPPING[model]()
esm.eval() # disable dropout
if model.startswith("esmfold"):
embed_dim = esm.esm.embed_dim
num_layers = esm.esm.num_layers
num_attention_heads = esm.esm.attention_heads
intermediate_size = 4 * embed_dim
token_dropout = esm.esm.token_dropout
emb_layer_norm_before = False # This code path does not exist in ESM-2
position_embedding_type = "rotary"
is_folding_model = True
esmfold_config = EsmFoldConfig()
for key, val in esm.cfg.items():
if hasattr(esmfold_config, key) and key != "trunk":
setattr(esmfold_config, key, val)
for key, val in esm.cfg.trunk.items():
if hasattr(esmfold_config.trunk, key) and key != "structure_module":
setattr(esmfold_config.trunk, key, val)
for key, val in esm.cfg.trunk.structure_module.items():
if hasattr(esmfold_config.trunk.structure_module, key):
setattr(esmfold_config.trunk.structure_module, key, val)
elif hasattr(esm, "args"):
# Indicates an ESM-1b or ESM-1v model
embed_dim = esm.args.embed_dim
num_layers = esm.args.layers
num_attention_heads = esm.args.attention_heads
intermediate_size = esm.args.ffn_embed_dim
token_dropout = esm.args.token_dropout
emb_layer_norm_before = True if esm.emb_layer_norm_before else False
position_embedding_type = "absolute"
is_folding_model = False
esmfold_config = None
else:
# Indicates an ESM-2 model
embed_dim = esm.embed_dim
num_layers = esm.num_layers
num_attention_heads = esm.attention_heads
intermediate_size = 4 * embed_dim # This is hardcoded in ESM-2
token_dropout = esm.token_dropout
emb_layer_norm_before = False # This code path does not exist in ESM-2
position_embedding_type = "rotary"
is_folding_model = False
esmfold_config = None
if is_folding_model:
alphabet = esm.esm.alphabet
vocab_list = tuple(alphabet.all_toks)
mask_token_id = alphabet.mask_idx
pad_token_id = alphabet.padding_idx
if is_folding_model:
original_esm_model = esm.esm
else:
original_esm_model = esm
config = EsmConfig(
vocab_size=original_esm_model.embed_tokens.num_embeddings,
mask_token_id=mask_token_id,
hidden_size=embed_dim,
num_hidden_layers=num_layers,
num_attention_heads=num_attention_heads,
intermediate_size=intermediate_size,
max_position_embeddings=1026,
layer_norm_eps=1e-5, # PyTorch default used in fairseq
attention_probs_dropout_prob=0.0,
hidden_dropout_prob=0.0,
pad_token_id=pad_token_id,
emb_layer_norm_before=emb_layer_norm_before,
token_dropout=token_dropout,
position_embedding_type=position_embedding_type,
is_folding_model=is_folding_model,
esmfold_config=esmfold_config,
vocab_list=vocab_list,
)
if classification_head:
config.num_labels = esm.classification_heads["mnli"].out_proj.weight.shape[0]
print("Our ESM config:", config)
if model.startswith("esmfold"):
model_class = EsmForProteinFolding
elif classification_head:
model_class = EsmForSequenceClassification
else:
model_class = EsmForMaskedLM
model = model_class(config)
model.eval()
# Now let's copy all the weights.
# Embeddings
model.esm.embeddings.word_embeddings.weight = original_esm_model.embed_tokens.weight
if position_embedding_type == "absolute":
model.esm.embeddings.position_embeddings.weight = original_esm_model.embed_positions.weight
if config.emb_layer_norm_before:
model.esm.embeddings.layer_norm.weight = original_esm_model.emb_layer_norm_before.weight
model.esm.embeddings.layer_norm.bias = original_esm_model.emb_layer_norm_before.bias
model.esm.encoder.emb_layer_norm_after.weight = original_esm_model.emb_layer_norm_after.weight
model.esm.encoder.emb_layer_norm_after.bias = original_esm_model.emb_layer_norm_after.bias
for i in range(config.num_hidden_layers):
# Encoder: start of layer
layer: EsmLayer = model.esm.encoder.layer[i]
# esm_layer: TransformerSentenceEncoderLayer = original_esm_model.layers[i]
esm_layer = original_esm_model.layers[i]
# self attention
self_attn: EsmSelfAttention = layer.attention.self
assert (
esm_layer.self_attn.k_proj.weight.data.shape
== esm_layer.self_attn.q_proj.weight.data.shape
== esm_layer.self_attn.v_proj.weight.data.shape
== torch.Size((config.hidden_size, config.hidden_size))
)
self_attn.query.weight.data = esm_layer.self_attn.q_proj.weight
self_attn.query.bias.data = esm_layer.self_attn.q_proj.bias
self_attn.key.weight.data = esm_layer.self_attn.k_proj.weight
self_attn.key.bias.data = esm_layer.self_attn.k_proj.bias
self_attn.value.weight.data = esm_layer.self_attn.v_proj.weight
self_attn.value.bias.data = esm_layer.self_attn.v_proj.bias
if getattr(esm_layer.self_attn, "rot_emb", None) is not None:
# Matt: Although inv_freq is not a trainable weight, it is computed at model init and cached.
# During the training of ESM-2 the model was converted to float16 precision, which also converts
# the inv_freq tensor, and the loss of precision remains even if the model is loaded later as float32.
# If we recompute inv_freq without this loss of precision then we will get subtly different rotary
# embeddings, which are enough to cause significant discrepancies in model outputs. To avoid this,
# we make sure the new model copies the data from the old inv_freq.
self_attn.rotary_embeddings.inv_freq.data = esm_layer.self_attn.rot_emb.inv_freq
# LayerNorm changes for pre-activation
layer.attention.LayerNorm.weight = esm_layer.self_attn_layer_norm.weight
layer.attention.LayerNorm.bias = esm_layer.self_attn_layer_norm.bias
layer.LayerNorm.weight = esm_layer.final_layer_norm.weight
layer.LayerNorm.bias = esm_layer.final_layer_norm.bias
# self-attention output
self_output: EsmSelfOutput = layer.attention.output
assert self_output.dense.weight.shape == esm_layer.self_attn.out_proj.weight.shape
self_output.dense.weight = esm_layer.self_attn.out_proj.weight
self_output.dense.bias = esm_layer.self_attn.out_proj.bias
# intermediate
intermediate: EsmIntermediate = layer.intermediate
assert intermediate.dense.weight.shape == esm_layer.fc1.weight.shape
intermediate.dense.weight = esm_layer.fc1.weight
intermediate.dense.bias = esm_layer.fc1.bias
# output
bert_output: EsmOutput = layer.output
assert bert_output.dense.weight.shape == esm_layer.fc2.weight.shape
bert_output.dense.weight = esm_layer.fc2.weight
bert_output.dense.bias = esm_layer.fc2.bias
# end of layer
if is_folding_model:
model.esm_s_combine.data = esm.esm_s_combine.data
model.af2_to_esm.data = esm.af2_to_esm.data
transfer_and_check_weights(esm.embedding, model.embedding)
transfer_and_check_weights(esm.esm_s_mlp, model.esm_s_mlp)
transfer_and_check_weights(esm.trunk, model.trunk)
transfer_and_check_weights(esm.distogram_head, model.distogram_head)
transfer_and_check_weights(esm.ptm_head, model.ptm_head)
transfer_and_check_weights(esm.lm_head, model.lm_head)
transfer_and_check_weights(esm.lddt_head, model.lddt_head)
elif classification_head:
model.classifier.dense.weight = esm.esm.classification_heads["mnli"].dense.weight
model.classifier.dense.bias = esm.classification_heads["mnli"].dense.bias
model.classifier.out_proj.weight = esm.classification_heads["mnli"].out_proj.weight
model.classifier.out_proj.bias = esm.classification_heads["mnli"].out_proj.bias
else:
# LM Head
model.lm_head.dense.weight = esm.lm_head.dense.weight
model.lm_head.dense.bias = esm.lm_head.dense.bias
model.lm_head.layer_norm.weight = esm.lm_head.layer_norm.weight
model.lm_head.layer_norm.bias = esm.lm_head.layer_norm.bias
model.lm_head.decoder.weight = esm.lm_head.weight
model.lm_head.bias = esm.lm_head.bias
# Contact prediction head
transfer_and_check_weights(esm.contact_head, model.esm.contact_head)
# Prepare data (first 2 sequences from ESMStructuralSplitDataset superfamily / 4)
if is_folding_model:
# Folding models aren't trained on masked inputs and don't like mask tokens.
sample_data = SAMPLE_DATA[:2]
else:
sample_data = SAMPLE_DATA
if is_folding_model:
hf_tokenizer = get_esmfold_tokenizer()
hf_tokens = hf_tokenizer(
[row[1] for row in sample_data], return_tensors="pt", padding=True, add_special_tokens=False
)
esmfold_aas, esmfold_mask, _, _, _ = esmfold_encode_sequences([row[1] for row in sample_data])
success = torch.all(hf_tokens["input_ids"] == esmfold_aas) and torch.all(
hf_tokens["attention_mask"] == esmfold_mask
)
else:
# Let's check that we get the same results.
batch_converter = alphabet.get_batch_converter()
batch_labels, batch_strs, batch_tokens = batch_converter(sample_data)
# Prepare tokenizer and make sure it matches
with TemporaryDirectory() as tempdir:
vocab = "\n".join(alphabet.all_toks)
vocab_file = Path(tempdir) / "vocab.txt"
vocab_file.write_text(vocab)
hf_tokenizer = EsmTokenizer(vocab_file=str(vocab_file))
hf_tokens = hf_tokenizer([row[1] for row in sample_data], return_tensors="pt", padding=True)
success = torch.all(hf_tokens["input_ids"] == batch_tokens)
print("Do both models tokenizers output the same tokens?", "🔥" if success else "💩")
if not success:
raise Exception("Tokenization does not match!")
with torch.no_grad():
if is_folding_model:
# Let's test the model in parts
# ESMFold always converts the ESM stem to float16, which requires float16 ops
# that don't exist on CPU. Therefore, to test it we need to run it on GPU. However,
# ESMFold is what we in the community call a "big boy" and so we desperately avoid putting both the
# original and the converted model on the GPU at the same time.
their_output = esm.cuda().infer([row[1] for row in sample_data])
our_output = model.cuda()(
input_ids=hf_tokens["input_ids"].cuda(), attention_mask=hf_tokens["attention_mask"].cuda()
)
else:
our_output = model(**hf_tokens, output_hidden_states=True)
our_output = our_output["logits"]
if classification_head:
their_output = esm.model.classification_heads["mnli"](esm.extract_features(batch_tokens))
else:
their_output = esm(hf_tokens["input_ids"], repr_layers=list(range(999)))
their_output = their_output["logits"]
if is_folding_model:
max_absolute_diff = torch.max(torch.abs(our_output["positions"] - their_output["positions"])).item()
success = torch.allclose(our_output["positions"], their_output["positions"], atol=1e-5)
else:
max_absolute_diff = torch.max(torch.abs(our_output - their_output)).item()
success = torch.allclose(our_output, their_output, atol=1e-5)
print(f"max_absolute_diff = {max_absolute_diff}") # ~ 1e-5
print("Do both models output the same tensors?", "🔥" if success else "💩")
if not success:
raise Exception("Something went wRoNg")
if not is_folding_model:
# Let's check contact prediction too
our_output = model.predict_contacts(hf_tokens["input_ids"], hf_tokens["attention_mask"])
their_output = esm.predict_contacts(hf_tokens["input_ids"])
max_absolute_diff = torch.max(torch.abs(our_output - their_output)).item()
success = torch.allclose(our_output, their_output, atol=1e-5)
print("Contact prediction testing:")
print(f"max_absolute_diff = {max_absolute_diff}") # ~ 1e-5
print("Do both models output the same tensors?", "🔥" if success else "💩")
if not success:
raise Exception("Something went wRoNg")
pathlib.Path(pytorch_dump_folder_path).mkdir(parents=True, exist_ok=True)
print(f"Saving model to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
del esm # Free up some memory before continuing
print(f"Saving tokenizer to {pytorch_dump_folder_path}")
hf_tokenizer.save_pretrained(pytorch_dump_folder_path)
if push_to_repo:
model.push_to_hub(repo_id=push_to_repo, token_token=auth_token)
hf_tokenizer.push_to_hub(repo_id=push_to_repo, token_token=auth_token)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--pytorch_dump_folder_path", type=str, required=True, help="Path to the output PyTorch model."
)
parser.add_argument(
"--classification_head", action="store_true", help="Whether to convert a final classification head."
)
parser.add_argument("--model", default=None, type=str, required=True, help="Name of model to convert.")
parser.add_argument("--push_to_repo", type=str, help="Repo to upload to (including username!).")
parser.add_argument("--auth_token", type=str, help="HuggingFace auth token.")
args = parser.parse_args()
convert_esm_checkpoint_to_pytorch(
args.model, args.pytorch_dump_folder_path, args.classification_head, args.push_to_repo, args.auth_token
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/esm/modeling_esm.py | # coding=utf-8
# Copyright 2022 Meta and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch ESM model."""
import math
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...file_utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
MaskedLMOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import logging
from .configuration_esm import EsmConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "facebook/esm2_t6_8M_UR50D"
_CONFIG_FOR_DOC = "EsmConfig"
ESM_PRETRAINED_MODEL_ARCHIVE_LIST = [
"facebook/esm2_t6_8M_UR50D",
"facebook/esm2_t12_35M_UR50D",
# This is not a complete list of all ESM models!
# See all ESM models at https://huggingface.co/models?filter=esm
]
def rotate_half(x):
x1, x2 = x.chunk(2, dim=-1)
return torch.cat((-x2, x1), dim=-1)
def apply_rotary_pos_emb(x, cos, sin):
cos = cos[:, :, : x.shape[-2], :]
sin = sin[:, :, : x.shape[-2], :]
return (x * cos) + (rotate_half(x) * sin)
def gelu(x):
"""
This is the gelu implementation from the original ESM repo. Using F.gelu yields subtly wrong results.
"""
return x * 0.5 * (1.0 + torch.erf(x / math.sqrt(2.0)))
def symmetrize(x):
"Make layer symmetric in final two dimensions, used for contact prediction."
return x + x.transpose(-1, -2)
def average_product_correct(x):
"Perform average product correct, used for contact prediction."
a1 = x.sum(-1, keepdims=True)
a2 = x.sum(-2, keepdims=True)
a12 = x.sum((-1, -2), keepdims=True)
avg = a1 * a2
avg.div_(a12) # in-place to reduce memory
normalized = x - avg
return normalized
class RotaryEmbedding(torch.nn.Module):
"""
Rotary position embeddings based on those in
[RoFormer](https://huggingface.co/docs/transformers/model_doc/roformer). Query and keys are transformed by rotation
matrices which depend on their relative positions.
"""
def __init__(self, dim: int):
super().__init__()
# Generate and save the inverse frequency buffer (non trainable)
inv_freq = 1.0 / (10000 ** (torch.arange(0, dim, 2).float() / dim))
inv_freq = inv_freq
self.register_buffer("inv_freq", inv_freq)
self._seq_len_cached = None
self._cos_cached = None
self._sin_cached = None
def _update_cos_sin_tables(self, x, seq_dimension=2):
seq_len = x.shape[seq_dimension]
# Reset the tables if the sequence length has changed,
# or if we're on a new device (possibly due to tracing for instance)
if seq_len != self._seq_len_cached or self._cos_cached.device != x.device:
self._seq_len_cached = seq_len
t = torch.arange(x.shape[seq_dimension], device=x.device).type_as(self.inv_freq)
freqs = torch.outer(t, self.inv_freq)
emb = torch.cat((freqs, freqs), dim=-1).to(x.device)
self._cos_cached = emb.cos()[None, None, :, :]
self._sin_cached = emb.sin()[None, None, :, :]
return self._cos_cached, self._sin_cached
def forward(self, q: torch.Tensor, k: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor]:
self._cos_cached, self._sin_cached = self._update_cos_sin_tables(k, seq_dimension=-2)
return (
apply_rotary_pos_emb(q, self._cos_cached, self._sin_cached),
apply_rotary_pos_emb(k, self._cos_cached, self._sin_cached),
)
class EsmContactPredictionHead(nn.Module):
"""Performs symmetrization, apc, and computes a logistic regression on the output features"""
def __init__(
self,
in_features: int,
bias=True,
eos_idx: int = 2,
):
super().__init__()
self.in_features = in_features
self.eos_idx = eos_idx
self.regression = nn.Linear(in_features, 1, bias)
self.activation = nn.Sigmoid()
def forward(self, tokens, attentions):
# remove eos token attentions
eos_mask = tokens.ne(self.eos_idx).to(attentions)
eos_mask = eos_mask.unsqueeze(1) * eos_mask.unsqueeze(2)
attentions = attentions * eos_mask[:, None, None, :, :]
attentions = attentions[..., :-1, :-1]
# remove cls token attentions
attentions = attentions[..., 1:, 1:]
batch_size, layers, heads, seqlen, _ = attentions.size()
attentions = attentions.view(batch_size, layers * heads, seqlen, seqlen)
# features: batch x channels x tokens x tokens (symmetric)
attentions = attentions.to(
self.regression.weight.device
) # attentions always float32, may need to convert to float16
attentions = average_product_correct(symmetrize(attentions))
attentions = attentions.permute(0, 2, 3, 1)
return self.activation(self.regression(attentions).squeeze(3))
class EsmEmbeddings(nn.Module):
"""
Same as BertEmbeddings with a tiny tweak for positional embeddings indexing.
"""
def __init__(self, config):
super().__init__()
self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id)
if config.emb_layer_norm_before:
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
else:
self.layer_norm = None
self.dropout = nn.Dropout(config.hidden_dropout_prob)
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
self.register_buffer(
"position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)), persistent=False
)
self.padding_idx = config.pad_token_id
self.position_embeddings = nn.Embedding(
config.max_position_embeddings, config.hidden_size, padding_idx=self.padding_idx
)
self.token_dropout = config.token_dropout
self.mask_token_id = config.mask_token_id
def forward(
self, input_ids=None, attention_mask=None, position_ids=None, inputs_embeds=None, past_key_values_length=0
):
if position_ids is None:
if input_ids is not None:
# Create the position ids from the input token ids. Any padded tokens remain padded.
position_ids = create_position_ids_from_input_ids(input_ids, self.padding_idx, past_key_values_length)
else:
position_ids = self.create_position_ids_from_inputs_embeds(inputs_embeds)
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
# Note that if we want to support ESM-1 (not 1b!) in future then we need to support an
# embedding_scale factor here.
embeddings = inputs_embeds
# Matt: ESM has the option to handle masking in MLM in a slightly unusual way. If the token_dropout
# flag is False then it is handled in the same was as BERT/RoBERTa. If it is set to True, however,
# masked tokens are treated as if they were selected for input dropout and zeroed out.
# This "mask-dropout" is compensated for when masked tokens are not present, by scaling embeddings by
# a factor of (fraction of unmasked tokens during training) / (fraction of unmasked tokens in sample).
# This is analogous to the way that dropout layers scale down outputs during evaluation when not
# actually dropping out values (or, equivalently, scale up their un-dropped outputs in training).
if self.token_dropout:
embeddings = embeddings.masked_fill((input_ids == self.mask_token_id).unsqueeze(-1), 0.0)
mask_ratio_train = 0.15 * 0.8 # Hardcoded as the ratio used in all ESM model training runs
src_lengths = attention_mask.sum(-1)
mask_ratio_observed = (input_ids == self.mask_token_id).sum(-1).float() / src_lengths
embeddings = (embeddings * (1 - mask_ratio_train) / (1 - mask_ratio_observed)[:, None, None]).to(
embeddings.dtype
)
if self.position_embedding_type == "absolute":
position_embeddings = self.position_embeddings(position_ids)
embeddings = embeddings + position_embeddings
if self.layer_norm is not None:
embeddings = self.layer_norm(embeddings)
if attention_mask is not None:
embeddings = (embeddings * attention_mask.unsqueeze(-1)).to(embeddings.dtype)
# Matt: I think this line was copied incorrectly from BERT, disabling it for now.
# embeddings = self.dropout(embeddings)
return embeddings
def create_position_ids_from_inputs_embeds(self, inputs_embeds):
"""
We are provided embeddings directly. We cannot infer which are padded so just generate sequential position ids.
Args:
inputs_embeds: torch.Tensor
Returns: torch.Tensor
"""
input_shape = inputs_embeds.size()[:-1]
sequence_length = input_shape[1]
position_ids = torch.arange(
self.padding_idx + 1, sequence_length + self.padding_idx + 1, dtype=torch.long, device=inputs_embeds.device
)
return position_ids.unsqueeze(0).expand(input_shape)
class EsmSelfAttention(nn.Module):
def __init__(self, config, position_embedding_type=None):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(config.hidden_size, self.all_head_size)
self.key = nn.Linear(config.hidden_size, self.all_head_size)
self.value = nn.Linear(config.hidden_size, self.all_head_size)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
self.position_embedding_type = position_embedding_type or getattr(
config, "position_embedding_type", "absolute"
)
self.rotary_embeddings = None
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
self.max_position_embeddings = config.max_position_embeddings
self.distance_embedding = nn.Embedding(2 * config.max_position_embeddings - 1, self.attention_head_size)
elif self.position_embedding_type == "rotary":
self.rotary_embeddings = RotaryEmbedding(dim=self.attention_head_size)
self.is_decoder = config.is_decoder
def transpose_for_scores(self, x: torch.Tensor) -> torch.Tensor:
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
mixed_query_layer = self.query(hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_layer = past_key_value[0]
value_layer = past_key_value[1]
attention_mask = encoder_attention_mask
elif is_cross_attention:
key_layer = self.transpose_for_scores(self.key(encoder_hidden_states))
value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
key_layer = torch.cat([past_key_value[0], key_layer], dim=2)
value_layer = torch.cat([past_key_value[1], value_layer], dim=2)
else:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
# Matt: Our BERT model (which this code was derived from) scales attention logits down by sqrt(head_dim).
# ESM scales the query down by the same factor instead. Modulo numerical stability these are equivalent,
# but not when rotary embeddings get involved. Therefore, we scale the query here to match the original
# ESM code and fix rotary embeddings.
query_layer = query_layer * self.attention_head_size**-0.5
if self.is_decoder:
# if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_layer, value_layer)
if self.position_embedding_type == "rotary":
query_layer, key_layer = self.rotary_embeddings(query_layer, key_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
seq_length = hidden_states.size()[1]
position_ids_l = torch.arange(seq_length, dtype=torch.long, device=hidden_states.device).view(-1, 1)
position_ids_r = torch.arange(seq_length, dtype=torch.long, device=hidden_states.device).view(1, -1)
distance = position_ids_l - position_ids_r
positional_embedding = self.distance_embedding(distance + self.max_position_embeddings - 1)
positional_embedding = positional_embedding.to(dtype=query_layer.dtype) # fp16 compatibility
if self.position_embedding_type == "relative_key":
relative_position_scores = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores
elif self.position_embedding_type == "relative_key_query":
relative_position_scores_query = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
relative_position_scores_key = torch.einsum("bhrd,lrd->bhlr", key_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores_query + relative_position_scores_key
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in EsmModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = nn.functional.softmax(attention_scores, dim=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
if self.is_decoder:
outputs = outputs + (past_key_value,)
return outputs
class EsmSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = hidden_states + input_tensor
return hidden_states
class EsmAttention(nn.Module):
def __init__(self, config):
super().__init__()
self.self = EsmSelfAttention(config)
self.output = EsmSelfOutput(config)
self.pruned_heads = set()
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
):
hidden_states_ln = self.LayerNorm(hidden_states)
self_outputs = self.self(
hidden_states_ln,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
class EsmIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = gelu(hidden_states)
return hidden_states
class EsmOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = hidden_states + input_tensor
return hidden_states
class EsmLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = EsmAttention(config)
self.is_decoder = config.is_decoder
self.add_cross_attention = config.add_cross_attention
if self.add_cross_attention:
if not self.is_decoder:
raise RuntimeError(f"{self} should be used as a decoder model if cross attention is added")
self.crossattention = EsmAttention(config)
self.intermediate = EsmIntermediate(config)
self.output = EsmOutput(config)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
):
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
past_key_value=self_attn_past_key_value,
)
attention_output = self_attention_outputs[0]
# if decoder, the last output is tuple of self-attn cache
if self.is_decoder:
outputs = self_attention_outputs[1:-1]
present_key_value = self_attention_outputs[-1]
else:
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
cross_attn_present_key_value = None
if self.is_decoder and encoder_hidden_states is not None:
if not hasattr(self, "crossattention"):
raise AttributeError(
f"If `encoder_hidden_states` are passed, {self} has to be instantiated"
" with cross-attention layers by setting `config.add_cross_attention=True`"
)
# cross_attn cached key/values tuple is at positions 3,4 of past_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
cross_attn_past_key_value,
output_attentions,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights
# add cross-attn cache to positions 3,4 of present_key_value tuple
cross_attn_present_key_value = cross_attention_outputs[-1]
present_key_value = present_key_value + cross_attn_present_key_value
layer_output = self.feed_forward_chunk(attention_output)
outputs = (layer_output,) + outputs
# if decoder, return the attn key/values as the last output
if self.is_decoder:
outputs = outputs + (present_key_value,)
return outputs
def feed_forward_chunk(self, attention_output):
attention_output_ln = self.LayerNorm(attention_output)
intermediate_output = self.intermediate(attention_output_ln)
layer_output = self.output(intermediate_output, attention_output)
return layer_output
class EsmEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layer = nn.ModuleList([EsmLayer(config) for _ in range(config.num_hidden_layers)])
self.emb_layer_norm_after = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.gradient_checkpointing = False
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
):
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning_once(
"`use_cache=True` is incompatible with `config.gradient_checkpointing=True`. Setting "
"`use_cache=False`..."
)
use_cache = False
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
next_decoder_cache = () if use_cache else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
past_key_value = past_key_values[i] if past_key_values is not None else None
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer_module.__call__,
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
else:
layer_outputs = layer_module(
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache = next_decoder_cache + (layer_outputs[-1],)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if self.config.add_cross_attention:
all_cross_attentions = all_cross_attentions + (layer_outputs[2],)
if self.emb_layer_norm_after:
hidden_states = self.emb_layer_norm_after(hidden_states)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
# Copied from transformers.models.bert.modeling_bert.BertPooler
class EsmPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
class EsmPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = EsmConfig
base_model_prefix = "esm"
supports_gradient_checkpointing = True
_no_split_modules = ["EsmLayer", "EsmFoldTriangularSelfAttentionBlock", "EsmEmbeddings"]
# Copied from transformers.models.bert.modeling_bert.BertPreTrainedModel._init_weights
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, nn.Linear):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
ESM_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`EsmConfig`]): Model configuration class with all the parameters of the
model. Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
ESM_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.FloatTensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~file_utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare ESM Model transformer outputting raw hidden-states without any specific head on top.",
ESM_START_DOCSTRING,
)
class EsmModel(EsmPreTrainedModel):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in [Attention is
all you need](https://arxiv.org/abs/1706.03762) by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit,
Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin.
To behave as an decoder the model needs to be initialized with the `is_decoder` argument of the configuration set
to `True`. To be used in a Seq2Seq model, the model needs to initialized with both `is_decoder` argument and
`add_cross_attention` set to `True`; an `encoder_hidden_states` is then expected as an input to the forward pass.
"""
def __init__(self, config, add_pooling_layer=True):
super().__init__(config)
self.config = config
self.embeddings = EsmEmbeddings(config)
self.encoder = EsmEncoder(config)
self.pooler = EsmPooler(config) if add_pooling_layer else None
self.contact_head = EsmContactPredictionHead(
in_features=config.num_hidden_layers * config.num_attention_heads, bias=True
)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("(batch_size, sequence_length)"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithPoolingAndCrossAttentions,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], BaseModelOutputWithPoolingAndCrossAttentions]:
r"""
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
past_key_values (`tuple(tuple(torch.FloatTensor))` of length `config.n_layers` with each tuple having 4 tensors of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if self.config.is_decoder:
use_cache = use_cache if use_cache is not None else self.config.use_cache
else:
use_cache = False
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
self.warn_if_padding_and_no_attention_mask(input_ids, attention_mask)
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
batch_size, seq_length = input_shape
device = input_ids.device if input_ids is not None else inputs_embeds.device
# past_key_values_length
past_key_values_length = past_key_values[0][0].shape[2] if past_key_values is not None else 0
if attention_mask is None:
attention_mask = torch.ones(((batch_size, seq_length + past_key_values_length)), device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape)
# If a 2D or 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.config.is_decoder and encoder_hidden_states is not None:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device)
encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(
input_ids=input_ids,
position_ids=position_ids,
attention_mask=attention_mask,
inputs_embeds=inputs_embeds,
past_key_values_length=past_key_values_length,
)
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output) if self.pooler is not None else None
if not return_dict:
return (sequence_output, pooled_output) + encoder_outputs[1:]
return BaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
def predict_contacts(self, tokens, attention_mask):
attns = self(tokens, attention_mask=attention_mask, return_dict=True, output_attentions=True).attentions
attns = torch.stack(attns, dim=1) # Matches the original model layout
# In the original model, attentions for padding tokens are completely zeroed out.
# This makes no difference most of the time because the other tokens won't attend to them,
# but it does for the contact prediction task, which takes attentions as input,
# so we have to mimic that here.
attns *= attention_mask.unsqueeze(1).unsqueeze(2).unsqueeze(3)
attns *= attention_mask.unsqueeze(1).unsqueeze(2).unsqueeze(4)
return self.contact_head(tokens, attns)
@add_start_docstrings("""ESM Model with a `language modeling` head on top.""", ESM_START_DOCSTRING)
class EsmForMaskedLM(EsmPreTrainedModel):
_tied_weights_keys = ["lm_head.decoder.weight"]
def __init__(self, config):
super().__init__(config)
if config.is_decoder:
logger.warning(
"If you want to use `EsmForMaskedLM` make sure `config.is_decoder=False` for "
"bi-directional self-attention."
)
self.esm = EsmModel(config, add_pooling_layer=False)
self.lm_head = EsmLMHead(config)
self.init_weights()
def get_output_embeddings(self):
return self.lm_head.decoder
def set_output_embeddings(self, new_embeddings):
self.lm_head.decoder = new_embeddings
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=MaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
mask="<mask>",
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, MaskedLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
kwargs (`Dict[str, any]`, optional, defaults to *{}*):
Used to hide legacy arguments that have been deprecated.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
prediction_scores = self.lm_head(sequence_output)
masked_lm_loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
labels = labels.to(prediction_scores.device)
masked_lm_loss = loss_fct(prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return MaskedLMOutput(
loss=masked_lm_loss,
logits=prediction_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def predict_contacts(self, tokens, attention_mask):
return self.esm.predict_contacts(tokens, attention_mask=attention_mask)
class EsmLMHead(nn.Module):
"""ESM Head for masked language modeling."""
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.decoder = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
self.bias = nn.Parameter(torch.zeros(config.vocab_size))
def forward(self, features, **kwargs):
x = self.dense(features)
x = gelu(x)
x = self.layer_norm(x)
# project back to size of vocabulary with bias
x = self.decoder(x) + self.bias
return x
@add_start_docstrings(
"""
ESM Model transformer with a sequence classification/regression head on top (a linear layer on top of the pooled
output) e.g. for GLUE tasks.
""",
ESM_START_DOCSTRING,
)
class EsmForSequenceClassification(EsmPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.config = config
self.esm = EsmModel(config, add_pooling_layer=False)
self.classifier = EsmClassificationHead(config)
self.init_weights()
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=SequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, SequenceClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
labels = labels.to(logits.device)
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
ESM Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
ESM_START_DOCSTRING,
)
class EsmForTokenClassification(EsmPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.esm = EsmModel(config, add_pooling_layer=False)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
self.init_weights()
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, TokenClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output)
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
labels = labels.to(logits.device)
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
class EsmClassificationHead(nn.Module):
"""Head for sentence-level classification tasks."""
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.out_proj = nn.Linear(config.hidden_size, config.num_labels)
def forward(self, features, **kwargs):
x = features[:, 0, :] # take <s> token (equiv. to [CLS])
x = self.dropout(x)
x = self.dense(x)
x = torch.tanh(x)
x = self.dropout(x)
x = self.out_proj(x)
return x
def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols
are ignored. This is modified from fairseq's `utils.make_positions`.
Args:
x: torch.Tensor x:
Returns: torch.Tensor
"""
# The series of casts and type-conversions here are carefully balanced to both work with ONNX export and XLA.
mask = input_ids.ne(padding_idx).int()
incremental_indices = (torch.cumsum(mask, dim=1).type_as(mask) + past_key_values_length) * mask
return incremental_indices.long() + padding_idx
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/esm/__init__.py | # Copyright 2022 Facebook and The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_tf_available, is_torch_available
_import_structure = {
"configuration_esm": ["ESM_PRETRAINED_CONFIG_ARCHIVE_MAP", "EsmConfig"],
"tokenization_esm": ["EsmTokenizer"],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_esm"] = [
"ESM_PRETRAINED_MODEL_ARCHIVE_LIST",
"EsmForMaskedLM",
"EsmForSequenceClassification",
"EsmForTokenClassification",
"EsmModel",
"EsmPreTrainedModel",
]
_import_structure["modeling_esmfold"] = ["EsmForProteinFolding", "EsmFoldPreTrainedModel"]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_esm"] = [
"TF_ESM_PRETRAINED_MODEL_ARCHIVE_LIST",
"TFEsmForMaskedLM",
"TFEsmForSequenceClassification",
"TFEsmForTokenClassification",
"TFEsmModel",
"TFEsmPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_esm import ESM_PRETRAINED_CONFIG_ARCHIVE_MAP, EsmConfig
from .tokenization_esm import EsmTokenizer
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_esm import (
ESM_PRETRAINED_MODEL_ARCHIVE_LIST,
EsmForMaskedLM,
EsmForSequenceClassification,
EsmForTokenClassification,
EsmModel,
EsmPreTrainedModel,
)
from .modeling_esmfold import EsmFoldPreTrainedModel, EsmForProteinFolding
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_esm import (
TF_ESM_PRETRAINED_MODEL_ARCHIVE_LIST,
TFEsmForMaskedLM,
TFEsmForSequenceClassification,
TFEsmForTokenClassification,
TFEsmModel,
TFEsmPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/esm/configuration_esm.py | # coding=utf-8
# Copyright 2022 Meta and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" ESM model configuration"""
from dataclasses import asdict, dataclass
from typing import Optional
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
# TODO Update this
ESM_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"facebook/esm-1b": "https://huggingface.co/facebook/esm-1b/resolve/main/config.json",
# See all ESM models at https://huggingface.co/models?filter=esm
}
class EsmConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`ESMModel`]. It is used to instantiate a ESM model
according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the ESM
[facebook/esm-1b](https://huggingface.co/facebook/esm-1b) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*):
Vocabulary size of the ESM model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`ESMModel`].
mask_token_id (`int`, *optional*):
The index of the mask token in the vocabulary. This must be included in the config because of the
"mask-dropout" scaling trick, which will scale the inputs depending on the number of masked tokens.
pad_token_id (`int`, *optional*):
The index of the padding token in the vocabulary. This must be included in the config because certain parts
of the ESM code use this instead of the attention mask.
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (often named feed-forward) layer in the Transformer encoder.
hidden_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention probabilities.
max_position_embeddings (`int`, *optional*, defaults to 1026):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
position_embedding_type (`str`, *optional*, defaults to `"absolute"`):
Type of position embedding. Choose one of `"absolute"`, `"relative_key"`, `"relative_key_query", "rotary"`.
For positional embeddings use `"absolute"`. For more information on `"relative_key"`, please refer to
[Self-Attention with Relative Position Representations (Shaw et al.)](https://arxiv.org/abs/1803.02155).
For more information on `"relative_key_query"`, please refer to *Method 4* in [Improve Transformer Models
with Better Relative Position Embeddings (Huang et al.)](https://arxiv.org/abs/2009.13658).
is_decoder (`bool`, *optional*, defaults to `False`):
Whether the model is used as a decoder or not. If `False`, the model is used as an encoder.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models). Only
relevant if `config.is_decoder=True`.
emb_layer_norm_before (`bool`, *optional*):
Whether to apply layer normalization after embeddings but before the main stem of the network.
token_dropout (`bool`, defaults to `False`):
When this is enabled, masked tokens are treated as if they had been dropped out by input dropout.
Examples:
```python
>>> from transformers import EsmModel, EsmConfig
>>> # Initializing a ESM facebook/esm-1b style configuration >>> configuration = EsmConfig()
>>> # Initializing a model from the configuration >>> model = ESMModel(configuration)
>>> # Accessing the model configuration >>> configuration = model.config
```"""
model_type = "esm"
def __init__(
self,
vocab_size=None,
mask_token_id=None,
pad_token_id=None,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
intermediate_size=3072,
hidden_dropout_prob=0.1,
attention_probs_dropout_prob=0.1,
max_position_embeddings=1026,
initializer_range=0.02,
layer_norm_eps=1e-12,
position_embedding_type="absolute",
use_cache=True,
emb_layer_norm_before=None,
token_dropout=False,
is_folding_model=False,
esmfold_config=None,
vocab_list=None,
**kwargs,
):
super().__init__(pad_token_id=pad_token_id, mask_token_id=mask_token_id, **kwargs)
self.vocab_size = vocab_size
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.intermediate_size = intermediate_size
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.max_position_embeddings = max_position_embeddings
self.initializer_range = initializer_range
self.layer_norm_eps = layer_norm_eps
self.position_embedding_type = position_embedding_type
self.use_cache = use_cache
self.emb_layer_norm_before = emb_layer_norm_before
self.token_dropout = token_dropout
self.is_folding_model = is_folding_model
if is_folding_model:
if esmfold_config is None:
logger.info("No esmfold_config supplied for folding model, using default values.")
esmfold_config = EsmFoldConfig()
elif isinstance(esmfold_config, dict):
esmfold_config = EsmFoldConfig(**esmfold_config)
self.esmfold_config = esmfold_config
if vocab_list is None:
logger.warning("No vocab_list supplied for folding model, assuming the ESM-2 vocabulary!")
self.vocab_list = get_default_vocab_list()
else:
self.vocab_list = vocab_list
else:
self.esmfold_config = None
self.vocab_list = None
if self.esmfold_config is not None and getattr(self.esmfold_config, "use_esm_attn_map", False):
raise ValueError("The HuggingFace port of ESMFold does not support use_esm_attn_map at this time!")
def to_dict(self):
"""
Serializes this instance to a Python dictionary. Override the default [`~PretrainedConfig.to_dict`].
Returns:
`Dict[str, any]`: Dictionary of all the attributes that make up this configuration instance,
"""
output = super().to_dict()
if isinstance(self.esmfold_config, EsmFoldConfig):
output["esmfold_config"] = self.esmfold_config.to_dict()
return output
@dataclass
class EsmFoldConfig:
esm_type: str = None
fp16_esm: bool = True
use_esm_attn_map: bool = False
esm_ablate_pairwise: bool = False
esm_ablate_sequence: bool = False
esm_input_dropout: float = 0
embed_aa: bool = True
bypass_lm: bool = False
lddt_head_hid_dim: int = 128
trunk: "TrunkConfig" = None
def __post_init__(self):
if self.trunk is None:
self.trunk = TrunkConfig()
elif isinstance(self.trunk, dict):
self.trunk = TrunkConfig(**self.trunk)
def to_dict(self):
"""
Serializes this instance to a Python dictionary. Override the default [`~PretrainedConfig.to_dict`].
Returns:
`Dict[str, any]`: Dictionary of all the attributes that make up this configuration instance,
"""
output = asdict(self)
output["trunk"] = self.trunk.to_dict()
return output
@dataclass
class TrunkConfig:
num_blocks: int = 48
sequence_state_dim: int = 1024
pairwise_state_dim: int = 128
sequence_head_width: int = 32
pairwise_head_width: int = 32
position_bins: int = 32
dropout: float = 0
layer_drop: float = 0
cpu_grad_checkpoint: bool = False
max_recycles: int = 4
chunk_size: Optional[int] = 128
structure_module: "StructureModuleConfig" = None
def __post_init__(self):
if self.structure_module is None:
self.structure_module = StructureModuleConfig()
elif isinstance(self.structure_module, dict):
self.structure_module = StructureModuleConfig(**self.structure_module)
if self.max_recycles <= 0:
raise ValueError(f"`max_recycles` should be positive, got {self.max_recycles}.")
if self.sequence_state_dim % self.sequence_state_dim != 0:
raise ValueError(
"`sequence_state_dim` should be a round multiple of `sequence_state_dim`, got"
f" {self.sequence_state_dim} and {self.sequence_state_dim}."
)
if self.pairwise_state_dim % self.pairwise_state_dim != 0:
raise ValueError(
"`pairwise_state_dim` should be a round multiple of `pairwise_state_dim`, got"
f" {self.pairwise_state_dim} and {self.pairwise_state_dim}."
)
sequence_num_heads = self.sequence_state_dim // self.sequence_head_width
pairwise_num_heads = self.pairwise_state_dim // self.pairwise_head_width
if self.sequence_state_dim != sequence_num_heads * self.sequence_head_width:
raise ValueError(
"`sequence_state_dim` should be equal to `sequence_num_heads * sequence_head_width, got"
f" {self.sequence_state_dim} != {sequence_num_heads} * {self.sequence_head_width}."
)
if self.pairwise_state_dim != pairwise_num_heads * self.pairwise_head_width:
raise ValueError(
"`pairwise_state_dim` should be equal to `pairwise_num_heads * pairwise_head_width, got"
f" {self.pairwise_state_dim} != {pairwise_num_heads} * {self.pairwise_head_width}."
)
if self.pairwise_state_dim % 2 != 0:
raise ValueError(f"`pairwise_state_dim` should be even, got {self.pairwise_state_dim}.")
if self.dropout >= 0.4:
raise ValueError(f"`dropout` should not be greater than 0.4, got {self.dropout}.")
def to_dict(self):
"""
Serializes this instance to a Python dictionary. Override the default [`~PretrainedConfig.to_dict`].
Returns:
`Dict[str, any]`: Dictionary of all the attributes that make up this configuration instance,
"""
output = asdict(self)
output["structure_module"] = self.structure_module.to_dict()
return output
@dataclass
class StructureModuleConfig:
"""
Args:
sequence_dim:
Single representation channel dimension
pairwise_dim:
Pair representation channel dimension
ipa_dim:
IPA hidden channel dimension
resnet_dim:
Angle resnet (Alg. 23 lines 11-14) hidden channel dimension
num_heads_ipa:
Number of IPA heads
num_qk_points:
Number of query/key points to generate during IPA
num_v_points:
Number of value points to generate during IPA
dropout_rate:
Dropout rate used throughout the layer
num_blocks:
Number of structure module blocks
num_transition_layers:
Number of layers in the single representation transition (Alg. 23 lines 8-9)
num_resnet_blocks:
Number of blocks in the angle resnet
num_angles:
Number of angles to generate in the angle resnet
trans_scale_factor:
Scale of single representation transition hidden dimension
epsilon:
Small number used in angle resnet normalization
inf:
Large number used for attention masking
"""
sequence_dim: int = 384
pairwise_dim: int = 128
ipa_dim: int = 16
resnet_dim: int = 128
num_heads_ipa: int = 12
num_qk_points: int = 4
num_v_points: int = 8
dropout_rate: float = 0.1
num_blocks: int = 8
num_transition_layers: int = 1
num_resnet_blocks: int = 2
num_angles: int = 7
trans_scale_factor: int = 10
epsilon: float = 1e-8
inf: float = 1e5
def to_dict(self):
return asdict(self)
def get_default_vocab_list():
return (
"<cls>",
"<pad>",
"<eos>",
"<unk>",
"L",
"A",
"G",
"V",
"S",
"E",
"R",
"T",
"I",
"D",
"P",
"K",
"Q",
"N",
"F",
"Y",
"M",
"H",
"W",
"C",
"X",
"B",
"U",
"Z",
"O",
".",
"-",
"<null_1>",
"<mask>",
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/esm/modeling_tf_esm.py | # coding=utf-8
# Copyright 2022 Meta and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch ESM model."""
from __future__ import annotations
import os
from typing import Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from tensorflow.keras.activations import gelu
from tensorflow.keras.layers import Dense, Dropout, Embedding, Layer, LayerNormalization
from ...file_utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward
from ...modeling_tf_outputs import (
TFBaseModelOutputWithPastAndCrossAttentions,
TFBaseModelOutputWithPoolingAndCrossAttentions,
TFMaskedLMOutput,
TFSequenceClassifierOutput,
TFTokenClassifierOutput,
)
from ...modeling_tf_utils import (
TFMaskedLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFSequenceClassificationLoss,
TFTokenClassificationLoss,
get_initializer,
shape_list,
unpack_inputs,
)
from ...tf_utils import check_embeddings_within_bounds, stable_softmax
from ...utils import logging
from .configuration_esm import EsmConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "facebook/esm2_t6_8M_UR50D"
_CONFIG_FOR_DOC = "EsmConfig"
TF_ESM_PRETRAINED_MODEL_ARCHIVE_LIST = [
"facebook/esm2_t6_8M_UR50D",
"facebook/esm2_t12_35M_UR50D",
# This is not a complete list of all ESM models!
# See all ESM models at https://huggingface.co/models?filter=esm
]
def rotate_half(x):
x1, x2 = tf.split(x, 2, axis=-1)
return tf.concat((-x2, x1), axis=-1)
def apply_rotary_pos_emb(x, cos, sin):
cos = cos[:, :, : tf.shape(x)[-2], :]
sin = sin[:, :, : tf.shape(x)[-2], :]
return (x * cos) + (rotate_half(x) * sin)
def symmetrize(x):
"Make layer symmetric in final two dimensions, used for contact prediction."
return x + tf.linalg.matrix_transpose(x) # Transposes last two dimensions only
def average_product_correct(x):
"Perform average product correct, used for contact prediction."
a1 = tf.reduce_sum(x, -1, keepdims=True)
a2 = tf.reduce_sum(x, -2, keepdims=True)
a12 = tf.reduce_sum(x, (-1, -2), keepdims=True)
avg = a1 * a2
avg = avg / a12
normalized = x - avg
return normalized
class TFRotaryEmbedding(Layer):
"""
Rotary position embeddings based on those in
[RoFormer](https://huggingface.co/docs/transformers/model_doc/roformer). Query and keys are transformed by rotation
matrices which depend on their relative positions.
"""
def __init__(self, dim: int, name=None):
super().__init__(name=name)
# Matt: The PyTorch version of this layer does a lot of work to cache values, but we just rely on TF compilation
# and/or XLA to sort out constants like that. It actually may not seem like this layer needs to be stateful at
# all when we benefit from TF compilation, but it does. The reason is that self.inv_freq is a buffer in the
# original implementation, but all the shared ESM checkpoints were trained with fp16 params. This means that
# the inv_freq tensor was stored as a float16, and we need to replicate those lower-precision values or our
# models give different outputs from the original.
self.dim = dim
def build(self, input_shape):
super().build(input_shape)
self.inv_freq = self.add_weight(
"inv_freq", shape=(self.dim // 2,), dtype=tf.float32, initializer=get_initializer(1.0), trainable=False
)
self.inv_freq.assign(
1.0 / (10000 ** (tf.range(start=0, limit=self.dim, delta=2, dtype=tf.float32) / self.dim))
)
def _compute_cos_sin(self, x, seq_dimension=2):
seq_len = tf.shape(x)[seq_dimension]
t = tf.range(seq_len, dtype=self.inv_freq.dtype)
freqs = tf.einsum("i, j -> ij", t, self.inv_freq) # Outer multiplication
emb = tf.concat((freqs, freqs), axis=-1)[None, None, :, :]
return tf.cos(emb), tf.sin(emb)
def call(self, q: tf.Tensor, k: tf.Tensor) -> Tuple[tf.Tensor, tf.Tensor]:
cos_emb, sin_emb = self._compute_cos_sin(k, seq_dimension=-2)
return (
apply_rotary_pos_emb(q, cos_emb, sin_emb),
apply_rotary_pos_emb(k, cos_emb, sin_emb),
)
class TFEsmContactPredictionHead(Layer):
"""Performs symmetrization, apc, and computes a logistic regression on the output features"""
def __init__(
self,
in_features: int,
bias=True,
eos_idx: int = 2,
name=None,
):
super().__init__(name=name)
self.eos_idx = eos_idx
self.in_features = in_features
self.regression = Dense(1, use_bias=bias, activation="sigmoid", name="regression")
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "regression", None) is not None:
with tf.name_scope(self.regression.name):
self.regression.build((None, self.in_features))
def call(self, tokens, attentions):
# remove eos token attentions
eos_mask = tf.cast(tokens != self.eos_idx, attentions.dtype)
eos_mask = tf.expand_dims(eos_mask, 1) * tf.expand_dims(eos_mask, 2)
attentions = attentions * eos_mask[:, None, None, :, :]
attentions = attentions[..., :-1, :-1]
# remove cls token attentions
attentions = attentions[..., 1:, 1:]
batch_size, layers, heads, seqlen, _ = shape_list(attentions)
attentions = tf.reshape(attentions, (batch_size, layers * heads, seqlen, seqlen))
# features: batch x channels x tokens x tokens (symmetric)
attentions = average_product_correct(symmetrize(attentions))
attentions = tf.transpose(attentions, perm=(0, 2, 3, 1))
return tf.squeeze(self.regression(attentions), 3)
class TFEsmEmbeddings(Layer):
"""
Same as BertEmbeddings with a tiny tweak for positional embeddings indexing.
"""
def __init__(self, config, name=None):
super().__init__(name=name)
self.word_embeddings = Embedding(
config.vocab_size,
config.hidden_size,
embeddings_initializer=get_initializer(config.initializer_range),
name="word_embeddings",
)
self.position_embeddings = Embedding(
config.max_position_embeddings,
config.hidden_size,
embeddings_initializer=get_initializer(config.initializer_range),
name="position_embeddings",
)
if config.emb_layer_norm_before:
self.layer_norm = LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm")
else:
self.layer_norm = None
# Matt: I think this line was copied incorrectly from BERT, disabling for now
# self.dropout = Dropout(config.hidden_dropout_prob)
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
self.position_ids = tf.range(config.max_position_embeddings)[None, :]
self.padding_idx = config.pad_token_id
self.token_dropout = config.token_dropout
self.mask_token_id = config.mask_token_id
self.config = config
def call(
self, input_ids=None, attention_mask=None, position_ids=None, inputs_embeds=None, past_key_values_length=0
):
if position_ids is None:
if input_ids is not None:
# Create the position ids from the input token ids. Any padded tokens remain padded.
position_ids = create_position_ids_from_input_ids(input_ids, self.padding_idx, past_key_values_length)
else:
position_ids = self.create_position_ids_from_inputs_embeds(inputs_embeds)
if inputs_embeds is None:
check_embeddings_within_bounds(input_ids, self.config.vocab_size)
inputs_embeds = self.word_embeddings(input_ids)
# Note that if we want to support ESM-1 (not 1b!) in future then we need to support an
# embedding_scale factor here.
embeddings = inputs_embeds
# Matt: ESM has the option to handle masking in MLM in a slightly unusual way. If the token_dropout
# flag is False then it is handled in the same was as BERT/RoBERTa. If it is set to True, however,
# masked tokens are treated as if they were selected for input dropout and zeroed out.
# This "mask-dropout" is compensated for when masked tokens are not present, by scaling embeddings by
# a factor of (fraction of unmasked tokens during training) / (fraction of unmasked tokens in sample).
# This is analogous to the way that dropout layers scale down outputs during evaluation when not
# actually dropping out values (or, equivalently, scale up their un-dropped outputs in training).
if self.token_dropout:
embeddings = tf.where((input_ids == self.mask_token_id)[:, :, None], 0.0, embeddings)
mask_ratio_train = 0.15 * 0.8 # Hardcoded as the ratio used in all ESM model training runs
src_lengths = tf.cast(tf.reduce_sum(attention_mask, axis=-1), tf.float32)
masked_tokens = input_ids == self.mask_token_id
mask_ratio_observed = tf.math.count_nonzero(masked_tokens, dtype=tf.float32, axis=-1) / src_lengths
embeddings = embeddings * (1 - mask_ratio_train) / (1 - mask_ratio_observed)[:, None, None]
if self.position_embedding_type == "absolute":
position_embeddings = self.position_embeddings(position_ids)
embeddings += position_embeddings
if self.layer_norm is not None:
embeddings = self.layer_norm(embeddings)
if attention_mask is not None:
embeddings = embeddings * tf.cast(tf.expand_dims(attention_mask, -1), embeddings.dtype)
# Matt: I think this line was copied incorrectly from BERT, disabling it for now.
# embeddings = self.dropout(embeddings)
return embeddings
def create_position_ids_from_inputs_embeds(self, inputs_embeds):
"""
We are provided embeddings directly. We cannot infer which are padded so just generate sequential position ids.
Args:
inputs_embeds: tf.Tensor
Returns: tf.Tensor
"""
input_shape = shape_list(inputs_embeds)[:-1]
sequence_length = input_shape[1]
position_ids = tf.range(
start=self.padding_idx + 1, limit=sequence_length + self.padding_idx + 1, dtype=tf.int64
)
return tf.broadcast_to(tf.expand_dims(position_ids, 0), input_shape)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "word_embeddings", None) is not None:
with tf.name_scope(self.word_embeddings.name):
self.word_embeddings.build(None)
if getattr(self, "position_embeddings", None) is not None:
with tf.name_scope(self.position_embeddings.name):
self.position_embeddings.build(None)
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.config.hidden_size])
class TFEsmSelfAttention(Layer):
def __init__(self, config, position_embedding_type=None, name=None):
super().__init__(name=name)
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = Dense(
self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="query"
)
self.key = Dense(self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="key")
self.value = Dense(
self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="value"
)
self.dropout = Dropout(config.attention_probs_dropout_prob)
self.position_embedding_type = position_embedding_type or getattr(
config, "position_embedding_type", "absolute"
)
self.rotary_embeddings = None
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
self.max_position_embeddings = config.max_position_embeddings
self.distance_embedding = Embedding(
2 * config.max_position_embeddings - 1,
self.attention_head_size,
embeddings_initializer=get_initializer(config.initializer_range),
)
elif self.position_embedding_type == "rotary":
self.rotary_embeddings = TFRotaryEmbedding(dim=self.attention_head_size, name="rotary_embeddings")
self.is_decoder = config.is_decoder
self.config = config
def transpose_for_scores(self, x: tf.Tensor) -> tf.Tensor:
new_x_shape = shape_list(x)[:-1] + [self.num_attention_heads, self.attention_head_size]
x = tf.reshape(x, new_x_shape)
return tf.transpose(x, perm=(0, 2, 1, 3))
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
encoder_hidden_states: tf.Tensor | None = None,
encoder_attention_mask: tf.Tensor | None = None,
past_key_value: Tuple[Tuple[tf.Tensor]] | None = None,
output_attentions: Optional[bool] = False,
training: bool = False,
) -> Tuple[tf.Tensor]:
mixed_query_layer = self.query(hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_layer = past_key_value[0]
value_layer = past_key_value[1]
attention_mask = encoder_attention_mask
elif is_cross_attention:
key_layer = self.transpose_for_scores(self.key(encoder_hidden_states))
value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
key_layer = tf.concat([past_key_value[0], key_layer], axis=2)
value_layer = tf.concat([past_key_value[1], value_layer], axis=2)
else:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
# Matt: Our BERT model (which this code was derived from) scales attention logits down by sqrt(head_dim).
# ESM scales the query down by the same factor instead. Modulo numerical stability these are equivalent,
# but not when rotary embeddings get involved. Therefore, we scale the query here to match the original
# ESM code and fix rotary embeddings.
query_layer = query_layer * self.attention_head_size**-0.5
if self.is_decoder:
# if cross_attention save Tuple(tf.Tensor, tf.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(tf.Tensor, tf.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_layer, value_layer)
if self.position_embedding_type == "rotary":
query_layer, key_layer = self.rotary_embeddings(query_layer, key_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = tf.matmul(query_layer, key_layer, transpose_b=True)
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
seq_length = shape_list(hidden_states)[1]
position_ids_l = tf.expand_dims(tf.range(seq_length, dtype=tf.int64), -1)
position_ids_r = tf.expand_dims(tf.range(seq_length, dtype=tf.int64), 0)
distance = position_ids_l - position_ids_r
positional_embedding = self.distance_embedding(distance + self.max_position_embeddings - 1)
positional_embedding = tf.cast(positional_embedding, query_layer.dtype) # fp16 compatibility
if self.position_embedding_type == "relative_key":
relative_position_scores = tf.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores
elif self.position_embedding_type == "relative_key_query":
relative_position_scores_query = tf.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
relative_position_scores_key = tf.einsum("bhrd,lrd->bhlr", key_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores_query + relative_position_scores_key
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in EsmModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = stable_softmax(attention_scores, axis=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs, training=training)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = attention_probs @ value_layer
context_layer = tf.transpose(context_layer, perm=(0, 2, 1, 3))
new_context_layer_shape = shape_list(context_layer)[:-2] + [self.all_head_size]
context_layer = tf.reshape(context_layer, new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
if self.is_decoder:
outputs = outputs + (past_key_value,)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "query", None) is not None:
with tf.name_scope(self.query.name):
self.query.build([None, None, self.config.hidden_size])
if getattr(self, "key", None) is not None:
with tf.name_scope(self.key.name):
self.key.build([None, None, self.config.hidden_size])
if getattr(self, "value", None) is not None:
with tf.name_scope(self.value.name):
self.value.build([None, None, self.config.hidden_size])
if getattr(self, "rotary_embeddings", None) is not None:
with tf.name_scope(self.rotary_embeddings.name):
self.rotary_embeddings.build(None)
class TFEsmSelfOutput(Layer):
def __init__(self, config, name=None):
super().__init__(name=name)
self.dense = Dense(
config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.dropout = Dropout(config.hidden_dropout_prob)
self.config = config
def call(self, hidden_states, input_tensor, training=False):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states += input_tensor
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
class TFEsmAttention(Layer):
def __init__(self, config, name=None):
super().__init__(name=name)
self.self = TFEsmSelfAttention(config, name="self")
self.output_layer = TFEsmSelfOutput(config, name="output")
self.pruned_heads = set()
self.LayerNorm = LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.config = config
def prune_heads(self, heads):
raise NotImplementedError
def call(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
training=False,
):
hidden_states_ln = self.LayerNorm(hidden_states)
self_outputs = self.self(
hidden_states_ln,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
training,
)
attention_output = self.output_layer(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "self", None) is not None:
with tf.name_scope(self.self.name):
self.self.build(None)
if getattr(self, "output_layer", None) is not None:
with tf.name_scope(self.output_layer.name):
self.output_layer.build(None)
if getattr(self, "LayerNorm", None) is not None:
with tf.name_scope(self.LayerNorm.name):
self.LayerNorm.build([None, None, self.config.hidden_size])
class TFEsmIntermediate(tf.keras.layers.Layer):
def __init__(self, config: EsmConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.intermediate_size,
kernel_initializer=get_initializer(config.initializer_range),
name="dense",
)
self.config = config
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = tf.nn.gelu(hidden_states)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
class TFEsmOutput(Layer):
def __init__(self, config, name=None):
super().__init__(name=name)
self.dense = Dense(
config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.dropout = Dropout(config.hidden_dropout_prob)
self.config = config
def call(self, hidden_states, input_tensor, training=False):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states += input_tensor
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.intermediate_size])
class TFEsmLayer(Layer):
def __init__(self, config, name=None):
super().__init__(name=name)
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = TFEsmAttention(config, name="attention")
self.is_decoder = config.is_decoder
self.add_cross_attention = config.add_cross_attention
if self.add_cross_attention:
if not self.is_decoder:
raise RuntimeError(f"{self} should be used as a decoder model if cross attention is added")
self.crossattention = TFEsmAttention(config)
self.intermediate = TFEsmIntermediate(config, name="intermediate")
self.output_layer = TFEsmOutput(config, name="output")
self.LayerNorm = LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.config = config
def call(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
training=False,
):
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
past_key_value=self_attn_past_key_value,
training=training,
)
attention_output = self_attention_outputs[0]
# if decoder, the last output is tuple of self-attn cache
if self.is_decoder:
outputs = self_attention_outputs[1:-1]
present_key_value = self_attention_outputs[-1]
else:
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
cross_attn_present_key_value = None
if self.is_decoder and encoder_hidden_states is not None:
if not hasattr(self, "crossattention"):
raise AttributeError(
f"If `encoder_hidden_states` are passed, {self} has to be instantiated"
" with cross-attention layers by setting `config.add_cross_attention=True`"
)
# cross_attn cached key/values tuple is at positions 3,4 of past_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
cross_attn_past_key_value,
output_attentions,
training=training,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights
# add cross-attn cache to positions 3,4 of present_key_value tuple
cross_attn_present_key_value = cross_attention_outputs[-1]
present_key_value = present_key_value + cross_attn_present_key_value
layernorm_output = self.LayerNorm(attention_output)
intermediate_output = self.intermediate(hidden_states=layernorm_output)
layer_output = self.output_layer(
hidden_states=intermediate_output, input_tensor=attention_output, training=training
)
outputs = (layer_output,) + outputs # add attentions if we output them
# if decoder, return the attn key/values as the last output
if self.is_decoder:
outputs = outputs + (present_key_value,)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "attention", None) is not None:
with tf.name_scope(self.attention.name):
self.attention.build(None)
if getattr(self, "intermediate", None) is not None:
with tf.name_scope(self.intermediate.name):
self.intermediate.build(None)
if getattr(self, "output_layer", None) is not None:
with tf.name_scope(self.output_layer.name):
self.output_layer.build(None)
if getattr(self, "LayerNorm", None) is not None:
with tf.name_scope(self.LayerNorm.name):
self.LayerNorm.build([None, None, self.config.hidden_size])
class TFEsmEncoder(Layer):
def __init__(self, config, name=None):
super().__init__(name=name)
self.config = config
self.layer = [TFEsmLayer(config, name=f"layer_._{i}") for i in range(config.num_hidden_layers)]
self.emb_layer_norm_after = LayerNormalization(epsilon=config.layer_norm_eps, name="emb_layer_norm_after")
def call(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
training=False,
):
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
next_decoder_cache = () if use_cache else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
past_key_value = past_key_values[i] if past_key_values is not None else None
layer_outputs = layer_module(
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
training,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[-1],)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if self.config.add_cross_attention:
all_cross_attentions = all_cross_attentions + (layer_outputs[2],)
if self.emb_layer_norm_after:
hidden_states = self.emb_layer_norm_after(hidden_states)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return TFBaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "emb_layer_norm_after", None) is not None:
with tf.name_scope(self.emb_layer_norm_after.name):
self.emb_layer_norm_after.build([None, None, self.config.hidden_size])
if getattr(self, "layer", None) is not None:
for layer in self.layer:
with tf.name_scope(layer.name):
layer.build(None)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertPooler with Bert->Esm
class TFEsmPooler(tf.keras.layers.Layer):
def __init__(self, config: EsmConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
activation="tanh",
name="dense",
)
self.config = config
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(inputs=first_token_tensor)
return pooled_output
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
class TFEsmPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = EsmConfig
base_model_prefix = "esm"
ESM_START_DOCSTRING = r"""
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a Keras [Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model) subclass. Use it as a
regular Keras model and refer to the TF/Keras documentation for all matters related to general usage and behavior.
Parameters:
config ([`EsmConfig`]): Model configuration class with all the parameters of the
model. Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~TFPreTrainedModel.from_pretrained`] method to load the model weights.
"""
ESM_INPUTS_DOCSTRING = r"""
Args:
input_ids (`tf.Tensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`tf.Tensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`tf.Tensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`tf.Tensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`tf.Tensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~file_utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare ESM Model transformer outputting raw hidden-states without any specific head on top.",
ESM_START_DOCSTRING,
)
class TFEsmMainLayer(Layer):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in [Attention is
all you need](https://arxiv.org/abs/1706.03762) by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit,
Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin.
To behave as an decoder the model needs to be initialized with the `is_decoder` argument of the configuration set
to `True`. To be used in a Seq2Seq model, the model needs to initialized with both `is_decoder` argument and
`add_cross_attention` set to `True`; an `encoder_hidden_states` is then expected as an input to the forward pass.
"""
_keys_to_ignore_on_load_missing = [r"position_ids"]
def __init__(self, config, add_pooling_layer=True, name=None, **kwargs):
super().__init__(name=name, **kwargs)
self.config = config
self.is_decoder = config.is_decoder
self.embeddings = TFEsmEmbeddings(config, name="embeddings")
self.encoder = TFEsmEncoder(config, name="encoder")
self.pooler = TFEsmPooler(config, name="pooler") if add_pooling_layer else None
self.contact_head = TFEsmContactPredictionHead(
in_features=self.config.num_hidden_layers * self.config.num_attention_heads, bias=True, name="contact_head"
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "embeddings", None) is not None:
with tf.name_scope(self.embeddings.name):
self.embeddings.build(None)
if getattr(self, "encoder", None) is not None:
with tf.name_scope(self.encoder.name):
self.encoder.build(None)
if getattr(self, "pooler", None) is not None:
with tf.name_scope(self.pooler.name):
self.pooler.build(None)
if getattr(self, "contact_head", None) is not None:
with tf.name_scope(self.contact_head.name):
self.contact_head.build(None)
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value: tf.Variable):
self.embeddings.word_embeddings.weight = value
self.embeddings.vocab_size = shape_list(value)[0]
def _prune_heads(self, heads_to_prune):
raise NotImplementedError
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
encoder_hidden_states: np.ndarray | tf.Tensor | None = None,
encoder_attention_mask: np.ndarray | tf.Tensor | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFBaseModelOutputWithPoolingAndCrossAttentions, Tuple[tf.Tensor]]:
if not self.config.is_decoder:
use_cache = False
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = shape_list(input_ids)
elif inputs_embeds is not None:
input_shape = shape_list(inputs_embeds)[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
batch_size, seq_length = input_shape
if past_key_values is None:
past_key_values_length = 0
past_key_values = [None] * len(self.encoder.layer)
else:
past_key_values_length = shape_list(past_key_values[0][0])[-2]
if attention_mask is None:
attention_mask = tf.fill(dims=(batch_size, seq_length + past_key_values_length), value=1)
embedding_output = self.embeddings(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
past_key_values_length=past_key_values_length,
training=training,
)
# We create a 3D attention mask from a 2D tensor mask.
# Sizes are [batch_size, 1, 1, to_seq_length]
# So we can broadcast to [batch_size, num_heads, from_seq_length, to_seq_length]
# this attention mask is more simple than the triangular masking of causal attention
# used in OpenAI GPT, we just need to prepare the broadcast dimension here.
attention_mask_shape = shape_list(attention_mask)
mask_seq_length = seq_length + past_key_values_length
# Copied from `modeling_tf_t5.py`
# Provided a padding mask of dimensions [batch_size, mask_seq_length]
# - if the model is a decoder, apply a causal mask in addition to the padding mask
# - if the model is an encoder, make the mask broadcastable to [batch_size, num_heads, mask_seq_length, mask_seq_length]
if self.is_decoder:
seq_ids = tf.range(mask_seq_length)
causal_mask = tf.less_equal(
tf.tile(seq_ids[None, None, :], (batch_size, mask_seq_length, 1)),
seq_ids[None, :, None],
)
causal_mask = tf.cast(causal_mask, dtype=attention_mask.dtype)
extended_attention_mask = causal_mask * attention_mask[:, None, :]
attention_mask_shape = shape_list(extended_attention_mask)
extended_attention_mask = tf.reshape(
extended_attention_mask, (attention_mask_shape[0], 1, attention_mask_shape[1], attention_mask_shape[2])
)
if past_key_values[0] is not None:
# attention_mask needs to be sliced to the shape `[batch_size, 1, from_seq_length - cached_seq_length, to_seq_length]
extended_attention_mask = extended_attention_mask[:, :, -seq_length:, :]
else:
extended_attention_mask = tf.reshape(
attention_mask, (attention_mask_shape[0], 1, 1, attention_mask_shape[1])
)
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and -10000.0 for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
extended_attention_mask = tf.cast(extended_attention_mask, dtype=embedding_output.dtype)
one_cst = tf.constant(1.0, dtype=embedding_output.dtype)
ten_thousand_cst = tf.constant(-10000.0, dtype=embedding_output.dtype)
extended_attention_mask = tf.multiply(tf.subtract(one_cst, extended_attention_mask), ten_thousand_cst)
# Copied from `modeling_tf_t5.py` with -1e9 -> -10000
if self.is_decoder and encoder_attention_mask is not None:
# If a 2D ou 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, mask_seq_length, mask_seq_length]
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
encoder_attention_mask = tf.cast(encoder_attention_mask, dtype=extended_attention_mask.dtype)
num_dims_encoder_attention_mask = len(shape_list(encoder_attention_mask))
if num_dims_encoder_attention_mask == 3:
encoder_extended_attention_mask = encoder_attention_mask[:, None, :, :]
if num_dims_encoder_attention_mask == 2:
encoder_extended_attention_mask = encoder_attention_mask[:, None, None, :]
# T5 has a mask that can compare sequence ids, we can simulate this here with this transposition
# Cf. https://github.com/tensorflow/mesh/blob/8d2465e9bc93129b913b5ccc6a59aa97abd96ec6/mesh_tensorflow/transformer/transformer_layers.py#L270
# encoder_extended_attention_mask = tf.math.equal(encoder_extended_attention_mask,
# tf.transpose(encoder_extended_attention_mask, perm=(-1, -2)))
encoder_extended_attention_mask = (1.0 - encoder_extended_attention_mask) * -10000.0
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
if head_mask is not None:
raise NotImplementedError
else:
head_mask = [None] * self.config.num_hidden_layers
encoder_outputs = self.encoder(
hidden_states=embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(hidden_states=sequence_output) if self.pooler is not None else None
if not return_dict:
return (
sequence_output,
pooled_output,
) + encoder_outputs[1:]
return TFBaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
def predict_contacts(self, tokens, attention_mask):
attns = self(tokens, attention_mask=attention_mask, return_dict=True, output_attentions=True).attentions
attns = tf.stack(attns, axis=1) # Matches the original model layout
# In the original model, attentions for padding tokens are completely zeroed out.
# This makes no difference most of the time because the other tokens won't attend to them,
# but it does for the contact prediction task, which takes attentions as input,
# so we have to mimic that here.
attention_mask = tf.cast(attention_mask, attns.dtype)
attns *= attention_mask[:, None, None, None]
attns *= attention_mask[:, None, None, :, None]
return self.contact_head(tokens, attns)
@add_start_docstrings(
"The bare ESM Model transformer outputting raw hidden-states without any specific head on top.",
ESM_START_DOCSTRING,
)
class TFEsmModel(TFEsmPreTrainedModel):
def __init__(self, config: EsmConfig, add_pooling_layer=True, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.esm = TFEsmMainLayer(config, add_pooling_layer=add_pooling_layer, name="esm")
@unpack_inputs
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFBaseModelOutputWithPoolingAndCrossAttentions,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
encoder_hidden_states: np.ndarray | tf.Tensor | None = None,
encoder_attention_mask: np.ndarray | tf.Tensor | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[TFBaseModelOutputWithPoolingAndCrossAttentions, Tuple[tf.Tensor]]:
r"""
encoder_hidden_states (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
past_key_values (`Tuple[Tuple[tf.Tensor]]` of length `config.n_layers`)
contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*, defaults to `True`):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`). Set to `False` during training, `True` during generation
"""
outputs = self.esm(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
return outputs
def predict_contacts(self, tokens, attention_mask):
return self.esm.predict_contacts(tokens, attention_mask)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "esm", None) is not None:
with tf.name_scope(self.esm.name):
self.esm.build(None)
@add_start_docstrings("""ESM Model with a `language modeling` head on top.""", ESM_START_DOCSTRING)
class TFEsmForMaskedLM(TFEsmPreTrainedModel, TFMaskedLanguageModelingLoss):
_keys_to_ignore_on_load_missing = [r"position_ids"]
_keys_to_ignore_on_load_unexpected = [r"pooler"]
def __init__(self, config):
super().__init__(config)
if config.is_decoder:
logger.warning(
"If you want to use `EsmForMaskedLM` make sure `config.is_decoder=False` for "
"bi-directional self-attention."
)
self.esm = TFEsmMainLayer(config, add_pooling_layer=False, name="esm")
self.lm_head = TFEsmLMHead(config, name="lm_head")
if config.tie_word_embeddings:
# Ensure word embeddings are built so that we actually have something to tie
with tf.name_scope(os.path.join(self._name_scope(), "esm", "embeddings", "word_embeddings")):
self.esm.embeddings.word_embeddings.build((None, None))
self.lm_head.decoder = self.esm.embeddings.word_embeddings.weights[0]
def get_output_embeddings(self):
return self.lm_head.decoder
def set_output_embeddings(self, new_embeddings):
self.lm_head.decoder = new_embeddings
def get_lm_head(self):
return self.lm_head
@unpack_inputs
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFMaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
mask="<mask>",
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
encoder_hidden_states: np.ndarray | tf.Tensor | None = None,
encoder_attention_mask: np.ndarray | tf.Tensor | None = None,
labels: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFMaskedLMOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
kwargs (`Dict[str, any]`, optional, defaults to *{}*):
Used to hide legacy arguments that have been deprecated.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
prediction_scores = self.lm_head(sequence_output)
masked_lm_loss = None
if labels is not None:
masked_lm_loss = self.hf_compute_loss(labels=labels, logits=prediction_scores)
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return TFMaskedLMOutput(
loss=masked_lm_loss,
logits=prediction_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def predict_contacts(self, tokens, attention_mask):
return self.esm.predict_contacts(tokens, attention_mask)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "esm", None) is not None:
with tf.name_scope(self.esm.name):
self.esm.build(None)
if getattr(self, "lm_head", None) is not None:
with tf.name_scope(self.lm_head.name):
self.lm_head.build(None)
class TFEsmLMHead(Layer):
"""ESM Head for masked language modeling."""
def __init__(self, config, name=None):
super().__init__(name=name)
self.dense = Dense(
config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.layer_norm = LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm")
if config.tie_word_embeddings:
self.decoder = None
else:
self.decoder = Dense(
config.vocab_size,
kernel_initializer=get_initializer(config.initializer_range),
name="decoder",
use_bias=False,
)
self.config = config
def build(self, input_shape=None):
# Separate bias to match the PT model and allow weight cross-loading to work
# Put it in the build so it gets the right name when adding it as a weight
if self.built:
return
self.built = True
self.bias = self.add_weight("bias", shape=(self.config.vocab_size,), initializer="zeros", trainable=True)
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.config.hidden_size])
if getattr(self, "decoder", None) is not None and not self.config.tie_word_embeddings:
with tf.name_scope(self.decoder.name):
self.decoder.build([None, None, self.config.hidden_size])
def get_bias(self):
return {"bias": self.bias}
def call(self, features):
x = self.dense(features)
x = gelu(x)
x = self.layer_norm(x)
# project back to size of vocabulary with bias
if self.config.tie_word_embeddings:
x = tf.matmul(x, self.decoder, transpose_b=True) + self.bias
else:
x = self.decoder(x) + self.bias
return x
@add_start_docstrings(
"""
ESM Model transformer with a sequence classification/regression head on top (a linear layer on top of the pooled
output) e.g. for GLUE tasks.
""",
ESM_START_DOCSTRING,
)
class TFEsmForSequenceClassification(TFEsmPreTrainedModel, TFSequenceClassificationLoss):
_keys_to_ignore_on_load_missing = [r"position_ids"]
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.config = config
self.esm = TFEsmMainLayer(config, add_pooling_layer=False, name="esm")
self.classifier = TFEsmClassificationHead(config, name="classifier")
@unpack_inputs
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFSequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
labels: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFSequenceClassifierOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
logits = self.classifier(sequence_output)
loss = None if labels is None else self.hf_compute_loss(labels, logits)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFSequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "esm", None) is not None:
with tf.name_scope(self.esm.name):
self.esm.build(None)
if getattr(self, "classifier", None) is not None:
with tf.name_scope(self.classifier.name):
self.classifier.build(None)
@add_start_docstrings(
"""
ESM Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
ESM_START_DOCSTRING,
)
class TFEsmForTokenClassification(TFEsmPreTrainedModel, TFTokenClassificationLoss):
_keys_to_ignore_on_load_unexpected = [r"pooler"]
_keys_to_ignore_on_load_missing = [r"position_ids"]
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.esm = TFEsmMainLayer(config, add_pooling_layer=False, name="esm")
self.dropout = Dropout(config.hidden_dropout_prob)
self.classifier = Dense(config.num_labels, name="classifier")
self.config = config
@unpack_inputs
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFTokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
labels: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFTokenClassifierOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output, training=training)
logits = self.classifier(sequence_output)
loss = None if labels is None else self.hf_compute_loss(labels, logits)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFTokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "esm", None) is not None:
with tf.name_scope(self.esm.name):
self.esm.build(None)
if getattr(self, "classifier", None) is not None:
with tf.name_scope(self.classifier.name):
self.classifier.build([None, None, self.config.hidden_size])
class TFEsmClassificationHead(Layer):
"""Head for sentence-level classification tasks."""
def __init__(self, config, name=None):
super().__init__(name=name)
self.dense = Dense(
config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
activation="tanh",
name="dense",
)
self.dropout = Dropout(config.hidden_dropout_prob)
self.out_proj = Dense(
config.num_labels,
kernel_initializer=get_initializer(config.initializer_range),
activation="linear",
name="out_proj",
)
self.config = config
def call(self, features, training=False):
x = features[:, 0, :] # take <s> token (equiv. to [CLS])
x = self.dropout(x, training=training)
x = self.dense(x)
x = self.dropout(x, training=training)
x = self.out_proj(x)
return x
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
if getattr(self, "out_proj", None) is not None:
with tf.name_scope(self.out_proj.name):
self.out_proj.build([None, None, self.config.hidden_size])
def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols
are ignored. This is modified from fairseq's `utils.make_positions`.
Args:
x: tf.Tensor x:
Returns: tf.Tensor
"""
# The series of casts and type-conversions here are carefully balanced to both work with ONNX export and XLA.
mask = tf.cast(input_ids != padding_idx, tf.int64)
incremental_indices = (tf.cumsum(mask, axis=1) + past_key_values_length) * mask
return incremental_indices + padding_idx
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/esm/tokenization_esm.py | # coding=utf-8
# Copyright 2022 Meta and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes for ESM."""
import os
from typing import List, Optional, Union
from ...tokenization_utils import PreTrainedTokenizer
from ...tokenization_utils_base import AddedToken
from ...utils import logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "vocab.txt"}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {
"facebook/esm2_t6_8M_UR50D": "https://huggingface.co/facebook/esm2_t6_8M_UR50D/resolve/main/vocab.txt",
"facebook/esm2_t12_35M_UR50D": "https://huggingface.co/facebook/esm2_t12_35M_UR50D/resolve/main/vocab.txt",
},
}
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {
"facebook/esm2_t6_8M_UR50D": 1024,
"facebook/esm2_t12_35M_UR50D": 1024,
}
def load_vocab_file(vocab_file):
with open(vocab_file, "r") as f:
lines = f.read().splitlines()
return [l.strip() for l in lines]
class EsmTokenizer(PreTrainedTokenizer):
"""
Constructs an ESM tokenizer.
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
model_input_names = ["input_ids", "attention_mask"]
def __init__(
self,
vocab_file,
unk_token="<unk>",
cls_token="<cls>",
pad_token="<pad>",
mask_token="<mask>",
eos_token="<eos>",
**kwargs,
):
self.all_tokens = load_vocab_file(vocab_file)
self._id_to_token = dict(enumerate(self.all_tokens))
self._token_to_id = {tok: ind for ind, tok in enumerate(self.all_tokens)}
super().__init__(
unk_token=unk_token,
cls_token=cls_token,
pad_token=pad_token,
mask_token=mask_token,
eos_token=eos_token,
**kwargs,
)
# TODO, all the tokens are added? But they are also part of the vocab... bit strange.
# none of them are special, but they all need special splitting.
self.unique_no_split_tokens = self.all_tokens
self._update_trie(self.unique_no_split_tokens)
def _convert_id_to_token(self, index: int) -> str:
return self._id_to_token.get(index, self.unk_token)
def _convert_token_to_id(self, token: str) -> int:
return self._token_to_id.get(token, self._token_to_id.get(self.unk_token))
def _tokenize(self, text, **kwargs):
return text.split()
def get_vocab_size(self, with_added_tokens=False):
return len(self._id_to_token)
def get_vocab(self):
return {token: i for i, token in enumerate(self.all_tokens)}
def token_to_id(self, token: str) -> int:
return self._token_to_id.get(token, self._token_to_id.get(self.unk_token))
def id_to_token(self, index: int) -> str:
return self._id_to_token.get(index, self.unk_token)
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
cls = [self.cls_token_id]
sep = [self.eos_token_id] # No sep token in ESM vocabulary
if token_ids_1 is None:
if self.eos_token_id is None:
return cls + token_ids_0
else:
return cls + token_ids_0 + sep
elif self.eos_token_id is None:
raise ValueError("Cannot tokenize multiple sequences when EOS token is not set!")
return cls + token_ids_0 + sep + token_ids_1 + sep # Multiple inputs always have an EOS token
def get_special_tokens_mask(
self, token_ids_0: List, token_ids_1: Optional[List] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieves sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer `prepare_for_model` or `encode_plus` methods.
Args:
token_ids_0 (`List[int]`):
List of ids of the first sequence.
token_ids_1 (`List[int]`, *optional*):
List of ids of the second sequence.
already_has_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
if token_ids_1 is not None:
raise ValueError(
"You should not supply a second sequence if the provided sequence of "
"ids is already formatted with special tokens for the model."
)
return [1 if token in self.all_special_ids else 0 for token in token_ids_0]
mask = [1] + ([0] * len(token_ids_0)) + [1]
if token_ids_1 is not None:
mask += [0] * len(token_ids_1) + [1]
return mask
def save_vocabulary(self, save_directory, filename_prefix):
vocab_file = os.path.join(save_directory, (filename_prefix + "-" if filename_prefix else "") + "vocab.txt")
with open(vocab_file, "w") as f:
f.write("\n".join(self.all_tokens))
return (vocab_file,)
@property
def vocab_size(self) -> int:
return self.get_vocab_size(with_added_tokens=False)
def _add_tokens(self, new_tokens: Union[List[str], List[AddedToken]], special_tokens: bool = False) -> int:
return super()._add_tokens(new_tokens, special_tokens=True)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/esm/modeling_esmfold.py | # coding=utf-8
# Copyright 2022 Meta and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import math
import sys
from dataclasses import dataclass
from functools import partial
from typing import Callable, Dict, List, Optional, Sequence, Tuple, Union
import numpy as np
import torch
import torch.nn as nn
from torch.nn import LayerNorm
from ...integrations.deepspeed import is_deepspeed_available
from ...modeling_outputs import ModelOutput
from ...utils import (
ContextManagers,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_scipy_available,
logging,
replace_return_docstrings,
)
from .configuration_esm import EsmConfig
from .modeling_esm import ESM_START_DOCSTRING, EsmModel, EsmPreTrainedModel
from .openfold_utils import (
OFProtein,
Rigid,
Rotation,
atom14_to_atom37,
chunk_layer,
compute_predicted_aligned_error,
compute_tm,
frames_and_literature_positions_to_atom14_pos,
make_atom14_masks,
residue_constants,
to_pdb,
torsion_angles_to_frames,
)
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "facebook/esmfold_v1"
_CONFIG_FOR_DOC = "EsmConfig"
@dataclass
class EsmForProteinFoldingOutput(ModelOutput):
"""
Output type of [`EsmForProteinFoldingOutput`].
Args:
frames (`torch.FloatTensor`):
Output frames.
sidechain_frames (`torch.FloatTensor`):
Output sidechain frames.
unnormalized_angles (`torch.FloatTensor`):
Predicted unnormalized backbone and side chain torsion angles.
angles (`torch.FloatTensor`):
Predicted backbone and side chain torsion angles.
positions (`torch.FloatTensor`):
Predicted positions of the backbone and side chain atoms.
states (`torch.FloatTensor`):
Hidden states from the protein folding trunk.
s_s (`torch.FloatTensor`):
Per-residue embeddings derived by concatenating the hidden states of each layer of the ESM-2 LM stem.
s_z (`torch.FloatTensor`):
Pairwise residue embeddings.
distogram_logits (`torch.FloatTensor`):
Input logits to the distogram used to compute residue distances.
lm_logits (`torch.FloatTensor`):
Logits output by the ESM-2 protein language model stem.
aatype (`torch.FloatTensor`):
Input amino acids (AlphaFold2 indices).
atom14_atom_exists (`torch.FloatTensor`):
Whether each atom exists in the atom14 representation.
residx_atom14_to_atom37 (`torch.FloatTensor`):
Mapping between atoms in the atom14 and atom37 representations.
residx_atom37_to_atom14 (`torch.FloatTensor`):
Mapping between atoms in the atom37 and atom14 representations.
atom37_atom_exists (`torch.FloatTensor`):
Whether each atom exists in the atom37 representation.
residue_index (`torch.FloatTensor`):
The index of each residue in the protein chain. Unless internal padding tokens are used, this will just be
a sequence of integers from 0 to `sequence_length`.
lddt_head (`torch.FloatTensor`):
Raw outputs from the lddt head used to compute plddt.
plddt (`torch.FloatTensor`):
Per-residue confidence scores. Regions of low confidence may indicate areas where the model's prediction is
uncertain, or where the protein structure is disordered.
ptm_logits (`torch.FloatTensor`):
Raw logits used for computing ptm.
ptm (`torch.FloatTensor`):
TM-score output representing the model's high-level confidence in the overall structure.
aligned_confidence_probs (`torch.FloatTensor`):
Per-residue confidence scores for the aligned structure.
predicted_aligned_error (`torch.FloatTensor`):
Predicted error between the model's prediction and the ground truth.
max_predicted_aligned_error (`torch.FloatTensor`):
Per-sample maximum predicted error.
"""
frames: torch.FloatTensor = None
sidechain_frames: torch.FloatTensor = None
unnormalized_angles: torch.FloatTensor = None
angles: torch.FloatTensor = None
positions: torch.FloatTensor = None
states: torch.FloatTensor = None
s_s: torch.FloatTensor = None
s_z: torch.FloatTensor = None
distogram_logits: torch.FloatTensor = None
lm_logits: torch.FloatTensor = None
aatype: torch.FloatTensor = None
atom14_atom_exists: torch.FloatTensor = None
residx_atom14_to_atom37: torch.FloatTensor = None
residx_atom37_to_atom14: torch.FloatTensor = None
atom37_atom_exists: torch.FloatTensor = None
residue_index: torch.FloatTensor = None
lddt_head: torch.FloatTensor = None
plddt: torch.FloatTensor = None
ptm_logits: torch.FloatTensor = None
ptm: torch.FloatTensor = None
aligned_confidence_probs: torch.FloatTensor = None
predicted_aligned_error: torch.FloatTensor = None
max_predicted_aligned_error: torch.FloatTensor = None
ESMFOLD_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.FloatTensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
masking_pattern (`torch.LongTensor` of shape `({0})`, *optional*):
Locations of tokens to mask during training as a form of regularization. Mask values selected in `[0, 1]`.
num_recycles (`int`, *optional*, defaults to `None`):
Number of times to recycle the input sequence. If `None`, defaults to `config.num_recycles`. "Recycling"
consists of passing the output of the folding trunk back in as input to the trunk. During training, the
number of recycles should vary with each batch, to ensure that the model learns to output valid predictions
after each recycle. During inference, num_recycles should be set to the highest value that the model was
trained with for maximum accuracy. Accordingly, when this value is set to `None`, config.max_recycles is
used.
"""
def is_fp16_enabled():
# Autocast world
fp16_enabled = torch.get_autocast_gpu_dtype() == torch.float16
fp16_enabled = fp16_enabled and torch.is_autocast_enabled()
return fp16_enabled
def is_deepspeed_initialized():
if is_deepspeed_available():
return False
else:
try:
import deepspeed
# This is not available in all DeepSpeed versions.
return deepspeed.utils.is_initialized()
except Exception:
return False
def collate_dense_tensors(samples: List[torch.Tensor], pad_v: float = 0) -> torch.Tensor:
"""
Takes a list of tensors with the following dimensions:
[(d_11, ..., d_1K),
(d_21, ..., d_2K), ..., (d_N1, ..., d_NK)]
and stack + pads them into a single tensor of:
(N, max_i=1,N { d_i1 }, ..., max_i=1,N {diK})
"""
if len(samples) == 0:
return torch.Tensor()
if len({x.dim() for x in samples}) != 1:
raise RuntimeError(f"Samples has varying dimensions: {[x.dim() for x in samples]}")
(device,) = tuple({x.device for x in samples}) # assumes all on same device
max_shape = [max(lst) for lst in zip(*[x.shape for x in samples])]
result = torch.empty(len(samples), *max_shape, dtype=samples[0].dtype, device=device)
result.fill_(pad_v)
for i in range(len(samples)):
result_i = result[i]
t = samples[i]
result_i[tuple(slice(0, k) for k in t.shape)] = t
return result
def flatten_final_dims(t: torch.Tensor, no_dims: int):
return t.reshape(t.shape[:-no_dims] + (-1,))
def permute_final_dims(tensor: torch.Tensor, inds: List[int]):
zero_index = -1 * len(inds)
first_inds = list(range(len(tensor.shape[:zero_index])))
return tensor.permute(first_inds + [zero_index + i for i in inds])
def dict_multimap(fn, dicts):
first = dicts[0]
new_dict = {}
for k, v in first.items():
all_v = [d[k] for d in dicts]
if isinstance(v, dict):
new_dict[k] = dict_multimap(fn, all_v)
else:
new_dict[k] = fn(all_v)
return new_dict
def trunc_normal_init_(weights, scale=1.0, fan="fan_in"):
shape = weights.shape
scale = scale / max(1, shape[1])
if not is_scipy_available():
logger.warning(
"This init requires scipy, but scipy was not found, default to an approximation that might not be"
" equivalent."
)
std = math.sqrt(scale)
torch.nn.init.normal_(weights, std=std).clamp(min=0.0, max=2.0 * std)
else:
from scipy.stats import truncnorm
std = math.sqrt(scale) / truncnorm.std(a=-2, b=2, loc=0, scale=1)
samples = truncnorm.rvs(a=-2, b=2, loc=0, scale=std, size=weights.numel())
samples = np.reshape(samples, shape)
weights.copy_(torch.tensor(samples, device=weights.device))
def ipa_point_weights_init_(weights):
with torch.no_grad():
softplus_inverse_1 = 0.541324854612918
weights.fill_(softplus_inverse_1)
class EsmFoldLinear(nn.Linear):
"""
A Linear layer with built-in nonstandard initializations. Called just like torch.nn.Linear.
Implements the initializers in 1.11.4, plus some additional ones found in the code.
"""
def __init__(
self,
in_dim: int,
out_dim: int,
bias: bool = True,
init: str = "default",
init_fn: Optional[Callable[[torch.Tensor, torch.Tensor], None]] = None,
):
"""
Args:
in_dim:
The final dimension of inputs to the layer
out_dim:
The final dimension of layer outputs
bias:
Whether to learn an additive bias. True by default
init:
The initializer to use. Choose from:
"default": LeCun fan-in truncated normal initialization "relu": He initialization w/ truncated normal
distribution "glorot": Fan-average Glorot uniform initialization "gating": Weights=0, Bias=1 "normal":
Normal initialization with std=1/sqrt(fan_in) "final": Weights=0, Bias=0
Overridden by init_fn if the latter is not None.
init_fn:
A custom initializer taking weight and bias as inputs. Overrides init if not None.
"""
super().__init__(in_dim, out_dim, bias=bias)
if bias:
with torch.no_grad():
self.bias.fill_(0)
self.init = init
self.init_fn = init_fn
if init not in ["default", "relu", "glorot", "gating", "normal", "final"]:
raise ValueError("Invalid init string.")
class EsmFoldLayerNorm(nn.Module):
def __init__(self, c_in, eps=1e-5):
super().__init__()
self.c_in = (c_in,)
self.eps = eps
self.weight = nn.Parameter(torch.ones(c_in))
self.bias = nn.Parameter(torch.zeros(c_in))
def forward(self, x):
d = x.dtype
if d is torch.bfloat16 and not is_deepspeed_initialized():
with torch.cuda.amp.autocast(enabled=False):
out = nn.functional.layer_norm(x, self.c_in, self.weight.to(dtype=d), self.bias.to(dtype=d), self.eps)
else:
out = nn.functional.layer_norm(x, self.c_in, self.weight, self.bias, self.eps)
return out
@torch.jit.ignore
def softmax_no_cast(t: torch.Tensor, dim: int = -1) -> torch.Tensor:
"""
Softmax, but without automatic casting to fp32 when the input is of type bfloat16
"""
d = t.dtype
if d is torch.bfloat16 and not is_deepspeed_initialized():
with torch.cuda.amp.autocast(enabled=False):
s = torch.nn.functional.softmax(t, dim=dim)
else:
s = torch.nn.functional.softmax(t, dim=dim)
return s
class EsmFoldAttention(nn.Module):
"""
Standard multi-head attention using AlphaFold's default layer initialization. Allows multiple bias vectors.
"""
def __init__(
self,
c_q: int,
c_k: int,
c_v: int,
c_hidden: int,
no_heads: int,
gating: bool = True,
):
"""
Args:
c_q:
Input dimension of query data
c_k:
Input dimension of key data
c_v:
Input dimension of value data
c_hidden:
Per-head hidden dimension
no_heads:
Number of attention heads
gating:
Whether the output should be gated using query data
"""
super().__init__()
self.c_q = c_q
self.c_k = c_k
self.c_v = c_v
self.c_hidden = c_hidden
self.no_heads = no_heads
self.gating = gating
# DISCREPANCY: c_hidden is not the per-head channel dimension, as
# stated in the supplement, but the overall channel dimension.
self.linear_q = EsmFoldLinear(self.c_q, self.c_hidden * self.no_heads, bias=False, init="glorot")
self.linear_k = EsmFoldLinear(self.c_k, self.c_hidden * self.no_heads, bias=False, init="glorot")
self.linear_v = EsmFoldLinear(self.c_v, self.c_hidden * self.no_heads, bias=False, init="glorot")
self.linear_o = EsmFoldLinear(self.c_hidden * self.no_heads, self.c_q, init="final")
self.linear_g = None
if self.gating:
self.linear_g = EsmFoldLinear(self.c_q, self.c_hidden * self.no_heads, init="gating")
self.sigmoid = nn.Sigmoid()
def _prep_qkv(self, q_x: torch.Tensor, kv_x: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor, torch.Tensor]:
# [*, Q/K/V, H * C_hidden]
q = self.linear_q(q_x)
k = self.linear_k(kv_x)
v = self.linear_v(kv_x)
# [*, Q/K, H, C_hidden]
q = q.view(q.shape[:-1] + (self.no_heads, -1))
k = k.view(k.shape[:-1] + (self.no_heads, -1))
v = v.view(v.shape[:-1] + (self.no_heads, -1))
# [*, H, Q/K, C_hidden]
q = q.transpose(-2, -3)
k = k.transpose(-2, -3)
v = v.transpose(-2, -3)
q /= math.sqrt(self.c_hidden)
return q, k, v
def _wrap_up(self, o: torch.Tensor, q_x: torch.Tensor) -> torch.Tensor:
if self.linear_g is not None:
g = self.sigmoid(self.linear_g(q_x))
# [*, Q, H, C_hidden]
g = g.view(g.shape[:-1] + (self.no_heads, -1))
o = o * g
# [*, Q, H * C_hidden]
o = flatten_final_dims(o, 2)
# [*, Q, C_q]
o = self.linear_o(o)
return o
def forward(
self,
q_x: torch.Tensor,
kv_x: torch.Tensor,
biases: Optional[List[torch.Tensor]] = None,
use_memory_efficient_kernel: bool = False,
use_lma: bool = False,
lma_q_chunk_size: int = 1024,
lma_kv_chunk_size: int = 4096,
use_flash: bool = False,
flash_mask: Optional[torch.Tensor] = None,
) -> torch.Tensor:
"""
Args:
q_x:
[*, Q, C_q] query data
kv_x:
[*, K, C_k] key data
biases:
List of biases that broadcast to [*, H, Q, K]
use_memory_efficient_kernel:
Whether to use a custom memory-efficient attention kernel. This should be the default choice for most.
If none of the "use_<...>" flags are True, a stock PyTorch implementation is used instead
use_lma:
Whether to use low-memory attention (Staats & Rabe 2021). If none of the "use_<...>" flags are True, a
stock PyTorch implementation is used instead
lma_q_chunk_size:
Query chunk size (for LMA)
lma_kv_chunk_size:
Key/Value chunk size (for LMA)
Returns
[*, Q, C_q] attention update
"""
if use_lma and (lma_q_chunk_size is None or lma_kv_chunk_size is None):
raise ValueError("If use_lma is specified, lma_q_chunk_size and lma_kv_chunk_size must be provided")
if use_flash and biases is not None:
raise ValueError("use_flash is incompatible with the bias option. For masking, use flash_mask instead")
attn_options = [use_memory_efficient_kernel, use_lma, use_flash]
if sum(attn_options) > 1:
raise ValueError("Choose at most one alternative attention algorithm")
if biases is None:
biases = []
# [*, H, Q/K, C_hidden]
query, key, value = self._prep_qkv(q_x, kv_x)
key = permute_final_dims(key, (1, 0))
# [*, H, Q, K]
output = torch.matmul(query, key)
for b in biases:
output += b
output = softmax_no_cast(output, -1)
# [*, H, Q, C_hidden]
output = torch.matmul(output, value)
output = output.transpose(-2, -3)
output = self._wrap_up(output, q_x)
return output
class EsmFoldTriangleAttention(nn.Module):
def __init__(self, c_in, c_hidden, no_heads, starting=True, inf=1e9):
"""
Args:
c_in:
Input channel dimension
c_hidden:
Overall hidden channel dimension (not per-head)
no_heads:
Number of attention heads
"""
super().__init__()
self.c_in = c_in
self.c_hidden = c_hidden
self.no_heads = no_heads
self.starting = starting
self.inf = inf
self.layer_norm = LayerNorm(self.c_in)
self.linear = EsmFoldLinear(c_in, self.no_heads, bias=False, init="normal")
self.mha = EsmFoldAttention(self.c_in, self.c_in, self.c_in, self.c_hidden, self.no_heads)
@torch.jit.ignore
def _chunk(
self,
x: torch.Tensor,
biases: List[torch.Tensor],
chunk_size: int,
use_memory_efficient_kernel: bool = False,
use_lma: bool = False,
inplace_safe: bool = False,
) -> torch.Tensor:
"triangle! triangle!"
mha_inputs = {
"q_x": x,
"kv_x": x,
"biases": biases,
}
return chunk_layer(
partial(self.mha, use_memory_efficient_kernel=use_memory_efficient_kernel, use_lma=use_lma),
mha_inputs,
chunk_size=chunk_size,
no_batch_dims=len(x.shape[:-2]),
_out=x if inplace_safe else None,
)
def forward(
self,
x: torch.Tensor,
mask: Optional[torch.Tensor] = None,
chunk_size: Optional[int] = None,
use_memory_efficient_kernel: bool = False,
use_lma: bool = False,
inplace_safe: bool = False,
) -> torch.Tensor:
"""
Args:
x:
[*, I, J, C_in] input tensor (e.g. the pair representation)
Returns:
[*, I, J, C_in] output tensor
"""
if mask is None:
# [*, I, J]
mask = x.new_ones(
x.shape[:-1],
)
if not self.starting:
x = x.transpose(-2, -3)
mask = mask.transpose(-1, -2)
# [*, I, J, C_in]
x = self.layer_norm(x)
# [*, I, 1, 1, J]
mask_bias = (self.inf * (mask - 1))[..., :, None, None, :]
# [*, H, I, J]
triangle_bias = permute_final_dims(self.linear(x), (2, 0, 1))
# [*, 1, H, I, J]
triangle_bias = triangle_bias.unsqueeze(-4)
biases = [mask_bias, triangle_bias]
if chunk_size is not None:
x = self._chunk(
x,
biases,
chunk_size,
use_memory_efficient_kernel=use_memory_efficient_kernel,
use_lma=use_lma,
inplace_safe=inplace_safe,
)
else:
x = self.mha(
q_x=x, kv_x=x, biases=biases, use_memory_efficient_kernel=use_memory_efficient_kernel, use_lma=use_lma
)
if not self.starting:
x = x.transpose(-2, -3)
return x
class EsmFoldTriangleMultiplicativeUpdate(nn.Module):
"""
Implements Algorithms 11 and 12.
"""
def __init__(self, config, _outgoing=True):
super().__init__()
c_hidden = config.pairwise_state_dim
self._outgoing = _outgoing
self.linear_a_p = EsmFoldLinear(c_hidden, c_hidden)
self.linear_a_g = EsmFoldLinear(c_hidden, c_hidden, init="gating")
self.linear_b_p = EsmFoldLinear(c_hidden, c_hidden)
self.linear_b_g = EsmFoldLinear(c_hidden, c_hidden, init="gating")
self.linear_g = EsmFoldLinear(c_hidden, c_hidden, init="gating")
self.linear_z = EsmFoldLinear(c_hidden, c_hidden, init="final")
self.layer_norm_in = LayerNorm(c_hidden)
self.layer_norm_out = LayerNorm(c_hidden)
self.sigmoid = nn.Sigmoid()
def _combine_projections(
self, a: torch.Tensor, b: torch.Tensor, _inplace_chunk_size: Optional[int] = None
) -> torch.Tensor:
if self._outgoing:
a = permute_final_dims(a, (2, 0, 1))
b = permute_final_dims(b, (2, 1, 0))
else:
a = permute_final_dims(a, (2, 1, 0))
b = permute_final_dims(b, (2, 0, 1))
if _inplace_chunk_size is not None:
# To be replaced by torch vmap
for i in range(0, a.shape[-3], _inplace_chunk_size):
a_chunk = a[..., i : i + _inplace_chunk_size, :, :]
b_chunk = b[..., i : i + _inplace_chunk_size, :, :]
a[..., i : i + _inplace_chunk_size, :, :] = torch.matmul(
a_chunk,
b_chunk,
)
p = a
else:
p = torch.matmul(a, b)
return permute_final_dims(p, (1, 2, 0))
def _inference_forward(
self,
z: torch.Tensor,
mask: Optional[torch.Tensor] = None,
inplace_chunk_size: Optional[int] = None,
with_add: bool = True,
):
"""
Args:
z:
A [*, N, N, C_z] pair representation
mask:
A [*, N, N] pair mask
inplace_chunk_size:
Size of chunks used in the main computation. Increase to trade memory for speed.
with_add:
If True, z is overwritten with (z + update). Otherwise, it is overwritten with (update).
Returns:
A reference to the overwritten z
More memory-efficient, inference-only version of the forward function. Uses in-place operations, fusion of the
addition that happens after this module in the Evoformer, a smidge of recomputation, and a cache of overwritten
values to lower peak memory consumption of this module from 5x the size of the input tensor z to 2.5x its size.
Useful for inference on extremely long sequences.
It works as follows. We will make reference to variables used in the default forward implementation below.
Naively, triangle multiplication attention requires the manifestation of 5 tensors the size of z: 1) z, the
"square" input tensor, 2) a, the first projection of z, 3) b, the second projection of b, 4) g, a z-sized mask,
and 5) a z-sized tensor for intermediate computations. For large N, this is prohibitively expensive; for
N=4000, for example, z is more than 8GB alone. To avoid this problem, we compute b, g, and all intermediate
tensors in small chunks, noting that the chunks required to compute a chunk of the output depend only on the
tensor a and corresponding vertical and horizontal chunks of z. This suggests an algorithm that loops over
pairs of chunks of z: hereafter "columns" and "rows" of z, even though each "column" and "row" in fact contains
inplace_chunk_size contiguous true columns and rows of z. Writing output chunks to a new tensor would bring
total memory consumption down to 3x the size of z. However, more memory can be saved by writing output chunks
directly to z in-place. WLOG, we choose to write output chunks vertically, overwriting the ith "column" of z at
the end of the ith iteration of the main loop. Despite this overwriting, the ith column is always one column
ahead of previously overwritten columns and can be recovered directly from z. After the first iteration,
however, the ith row of z is always at least partially overwritten. For this reason, we introduce the z-cache,
a tensor one-half the size of z. The z-cache initially contains the left half (2nd and 3rd quadrants) of z. For
0 < i < N/2, the missing left part of the ith row of z is recovered from this cache at the beginning of the ith
iteration. Once i exceeds n/2, the cache is "reoriented" to encompass the 3rd and 4th quadrants of z instead.
Though the 3rd quadrant of the original z is entirely overwritten at this point, it can be recovered from the
z-cache itself. Thereafter, the ith row of z can be recovered in its entirety from the reoriented z-cache.
After the final iteration, z has been completely overwritten and contains the triangular multiplicative update.
If with_add is True, it instead contains the sum of z and the triangular multiplicative update. In either case,
peak memory consumption is just 2.5x the size of z, disregarding memory used for chunks and other small
variables.
"""
if mask is None:
mask = z.new_ones(z.shape[:-1])
mask = mask.unsqueeze(-1)
def compute_projection_helper(pair, mask, a=True):
if a:
linear_g = self.linear_a_g
linear_p = self.linear_a_p
else:
linear_g = self.linear_b_g
linear_p = self.linear_b_p
pair = self.layer_norm_in(pair)
p = linear_g(pair)
p.sigmoid_()
p *= linear_p(pair)
p *= mask
p = permute_final_dims(p, (2, 0, 1))
return p
def compute_projection(pair, mask, a=True, chunked=True):
need_transpose = self._outgoing ^ a
if not chunked:
p = compute_projection_helper(pair, mask, a)
if need_transpose:
p = p.transpose(-1, -2)
else:
# This computation is chunked so as not to exceed our 2.5x
# budget with a large intermediate tensor
linear_g = self.linear_a_g if a else self.linear_b_g
c = linear_g.bias.shape[-1]
out_shape = pair.shape[:-3] + (c,) + pair.shape[-3:-1]
p = pair.new_zeros(out_shape)
for i in range(0, pair.shape[-3], inplace_chunk_size):
pair_chunk = pair[..., i : i + inplace_chunk_size, :, :]
pair_chunk = compute_projection_helper(
pair[..., i : i + inplace_chunk_size, :, :],
mask[..., i : i + inplace_chunk_size, :, :],
a,
)
if need_transpose:
pair_chunk = pair_chunk.transpose(-1, -2)
p[..., i : i + inplace_chunk_size] = pair_chunk
else:
p[..., i : i + inplace_chunk_size, :] = pair_chunk
del pair_chunk
return p
# We start by fully manifesting a. In addition to the input, this
# brings total memory consumption to 2x z (disregarding size of chunks)
# [*, N, N, c]
a = compute_projection(z, mask, True, chunked=True)
if inplace_chunk_size is not None:
n = a.shape[-1]
half_n = n // 2 + n % 2
row_dim = -3
col_dim = -2
b_chunk_dim = row_dim if self._outgoing else col_dim
def empty_slicer(t):
return [slice(None) for _ in t.shape]
def slice_tensor(t, start, end, dim):
# Slices start:end from the dim dimension of t
s = empty_slicer(t)
s[dim] = slice(start, end)
return t[s]
def flip_z_cache_(z_cache, z):
# "Reorient" the z_cache (see below), filling it with quadrants
# 3---recovered from the z_cache---and 4---recovered from z---
# of the input tensor z.
quadrant_3 = slice_tensor(z_cache, half_n, None, row_dim)
z_cache = z_cache.transpose(row_dim, col_dim)
# If n is odd, we need to shrink the z_cache by one row
z_cache = z_cache[..., : (n // 2), :, :]
# Move the 3rd quadrant of z into the
first_half_slicer = empty_slicer(z_cache)
first_half_slicer[col_dim] = slice(0, half_n)
z_cache[first_half_slicer] = quadrant_3
# Get the fourth quadrant of z
quadrant_4 = slice_tensor(z, half_n, None, row_dim)
quadrant_4 = slice_tensor(quadrant_4, half_n, None, col_dim)
# Insert said quadrant into the rotated z-cache
quadrant_3_slicer = empty_slicer(z_cache)
quadrant_3_slicer[col_dim] = slice(half_n, None)
z_cache[quadrant_3_slicer] = quadrant_4
return z_cache
# Initialize the z cache to the left half of z.
z_cache_shape = list(z.shape)
z_cache_shape[col_dim] = half_n
z_cache = z.new_zeros(z_cache_shape)
z_cache_slicer = empty_slicer(z_cache)
z_cache_slicer[col_dim] = slice(0, half_n)
z_cache.copy_(z[z_cache_slicer])
z_cache_rotated = False
# We need to reorient the z-cache at the halfway point, and we
# don't want a single chunk to straddle that point. We contract one
# of the chunks in the middle to address that problem.
i_range = list(range(0, half_n, inplace_chunk_size))
initial_offsets = [i_2 - i_1 for i_1, i_2 in zip(i_range, i_range[1:] + [half_n])]
after_half = list(range(half_n, n, inplace_chunk_size))
after_half_offsets = [inplace_chunk_size for _ in after_half]
combined_range_with_offsets = zip(i_range + after_half, initial_offsets + after_half_offsets)
for i, offset in combined_range_with_offsets:
if not z_cache_rotated and i >= half_n:
z_cache = flip_z_cache_(z_cache, z)
z_cache_rotated = True
z_chunk_b = slice_tensor(z, i, i + offset, b_chunk_dim)
mask_chunk = slice_tensor(mask, i, i + offset, b_chunk_dim)
z_chunk_b = z_chunk_b.clone()
if b_chunk_dim == col_dim:
z_chunk_b = slice_tensor(z, i, i + offset, col_dim)
else: # b_chunk_dim == row_dim
# In this case, the b-dimension (b_chunk_dim) is partially
# overwritten at the end of each iteration. We need to
# restore the missing component from the z-cache.
if not z_cache_rotated:
z_chunk_slicer = empty_slicer(z_chunk_b)
z_chunk_slicer[col_dim] = slice(0, half_n)
z_chunk_b[z_chunk_slicer] = slice_tensor(z_cache, i, i + offset, row_dim)
else:
z_cache_offset = i - half_n
z_chunk_b = slice_tensor(z_cache, z_cache_offset, z_cache_offset + offset, row_dim)
b_chunk = compute_projection(z_chunk_b, mask_chunk, a=False, chunked=False)
del z_chunk_b
x_chunk = torch.matmul(a, b_chunk)
x_chunk = permute_final_dims(x_chunk, (1, 2, 0))
x_chunk = self.layer_norm_out(x_chunk)
x_chunk = self.linear_z(x_chunk)
# The g dimension (col_dim) is parallel to and ahead of the
# overwrites in z. We can extract the g chunk normally.
z_chunk_g = slice_tensor(z, i, i + offset, col_dim)
g_chunk = self.linear_g(self.layer_norm_in(z_chunk_g))
g_chunk.sigmoid_()
del z_chunk_g
x_chunk *= g_chunk
# Write the columns into z in-place
z_slicer = empty_slicer(z)
z_slicer[col_dim] = slice(i, i + offset)
if with_add:
z[z_slicer] += x_chunk
else:
z[z_slicer] = x_chunk
else:
b = compute_projection(z, mask, False, False)
x = torch.matmul(a, b)
x = self.layer_norm_out(x)
x = self.linear_z(x)
g = self.linear_g(z)
g.sigmoid_()
x *= g
if with_add:
z += x
else:
z = x
return z
def forward(
self,
z: torch.Tensor,
mask: Optional[torch.Tensor] = None,
inplace_safe: bool = False,
_add_with_inplace: bool = False,
_inplace_chunk_size: Optional[int] = 256,
) -> torch.Tensor:
"""
Args:
x:
[*, N_res, N_res, C_z] input tensor
mask:
[*, N_res, N_res] input mask
Returns:
[*, N_res, N_res, C_z] output tensor
"""
if inplace_safe:
x = self._inference_forward(
z,
mask,
inplace_chunk_size=_inplace_chunk_size,
with_add=_add_with_inplace,
)
return x
if mask is None:
mask = z.new_ones(z.shape[:-1])
mask = mask.unsqueeze(-1)
z = self.layer_norm_in(z)
a = mask
a = a * self.sigmoid(self.linear_a_g(z))
a = a * self.linear_a_p(z)
b = mask
b = b * self.sigmoid(self.linear_b_g(z))
b = b * self.linear_b_p(z)
if is_fp16_enabled():
with torch.cuda.amp.autocast(enabled=False):
x = self._combine_projections(a.float(), b.float())
else:
x = self._combine_projections(a, b)
del a, b
x = self.layer_norm_out(x)
x = self.linear_z(x)
g = self.sigmoid(self.linear_g(z))
x = x * g
return x
class EsmFoldPreTrainedModel(EsmPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
# Subclass `EsMPreTrainedModel` to deal with special init
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, EsmFoldLinear):
with torch.no_grad():
if module.init_fn is not None:
module.init_fn(module.weight, module.bias)
elif module.init == "default":
trunc_normal_init_(module.weight, scale=1.0)
elif module.init == "relu":
trunc_normal_init_(module.weight, scale=2.0)
elif module.init == "glorot":
nn.init.xavier_uniform_(module.weight, gain=1)
elif module.init == "gating":
module.weight.fill_(0.0)
if module.bias:
module.bias.fill_(1.0)
elif module.init == "normal":
torch.nn.init.kaiming_normal_(module.weight, nonlinearity="linear")
elif module.init == "final":
module.weight.fill_(0.0)
elif isinstance(module, EsmFoldInvariantPointAttention):
ipa_point_weights_init_(module.head_weights)
elif isinstance(module, EsmFoldTriangularSelfAttentionBlock):
torch.nn.init.zeros_(module.tri_mul_in.linear_z.weight)
torch.nn.init.zeros_(module.tri_mul_in.linear_z.bias)
torch.nn.init.zeros_(module.tri_mul_out.linear_z.weight)
torch.nn.init.zeros_(module.tri_mul_out.linear_z.bias)
torch.nn.init.zeros_(module.tri_att_start.mha.linear_o.weight)
torch.nn.init.zeros_(module.tri_att_start.mha.linear_o.bias)
torch.nn.init.zeros_(module.tri_att_end.mha.linear_o.weight)
torch.nn.init.zeros_(module.tri_att_end.mha.linear_o.bias)
torch.nn.init.zeros_(module.sequence_to_pair.o_proj.weight)
torch.nn.init.zeros_(module.sequence_to_pair.o_proj.bias)
torch.nn.init.zeros_(module.pair_to_sequence.linear.weight)
torch.nn.init.zeros_(module.seq_attention.o_proj.weight)
torch.nn.init.zeros_(module.seq_attention.o_proj.bias)
torch.nn.init.zeros_(module.mlp_seq.mlp[-2].weight)
torch.nn.init.zeros_(module.mlp_seq.mlp[-2].bias)
torch.nn.init.zeros_(module.mlp_pair.mlp[-2].weight)
torch.nn.init.zeros_(module.mlp_pair.mlp[-2].bias)
else:
super()._init_weights(module)
class EsmFoldSelfAttention(nn.Module):
def __init__(self, embed_dim, num_heads, head_width, gated=False):
super().__init__()
assert embed_dim == num_heads * head_width
self.embed_dim = embed_dim
self.num_heads = num_heads
self.head_width = head_width
self.proj = nn.Linear(embed_dim, embed_dim * 3, bias=False)
self.o_proj = nn.Linear(embed_dim, embed_dim, bias=True)
self.gated = gated
if gated:
self.g_proj = nn.Linear(embed_dim, embed_dim)
torch.nn.init.zeros_(self.g_proj.weight)
torch.nn.init.ones_(self.g_proj.bias)
self.rescale_factor = self.head_width**-0.5
torch.nn.init.zeros_(self.o_proj.bias)
def forward(self, x, mask=None, bias=None, indices=None):
"""
Basic self attention with optional mask and external pairwise bias. To handle sequences of different lengths,
use mask.
Inputs:
x: batch of input sequneces (.. x L x C) mask: batch of boolean masks where 1=valid, 0=padding position (..
x L_k) bias: batch of scalar pairwise attention biases (.. x Lq x Lk x num_heads)
Outputs:
sequence projection (B x L x embed_dim), attention maps (B x L x L x num_heads)
"""
t = self.proj(x).view(*x.shape[:2], self.num_heads, -1)
t = t.permute(0, 2, 1, 3)
q, k, v = t.chunk(3, dim=-1)
q = self.rescale_factor * q
a = torch.einsum("...qc,...kc->...qk", q, k)
# Add external attention bias.
if bias is not None:
a = a + bias.permute(0, 3, 1, 2)
# Do not attend to padding tokens.
if mask is not None:
mask = mask[:, None, None]
a = a.masked_fill(mask == False, -np.inf) # noqa: E712
a = nn.functional.softmax(a, dim=-1)
y = torch.einsum("...hqk,...hkc->...qhc", a, v)
y = y.reshape(*y.shape[:2], -1)
if self.gated:
y = self.g_proj(x).sigmoid() * y
y = self.o_proj(y)
return y, a.permute(0, 3, 1, 2)
class EsmFoldDropout(nn.Module):
"""
Implementation of dropout with the ability to share the dropout mask along a particular dimension.
"""
def __init__(self, r: float, batch_dim: Union[int, List[int]]):
super().__init__()
self.r = r
if isinstance(batch_dim, int):
batch_dim = [batch_dim]
self.batch_dim = batch_dim
self.dropout = nn.Dropout(self.r)
def forward(self, x: torch.Tensor) -> torch.Tensor:
shape = list(x.shape)
if self.batch_dim is not None:
for bd in self.batch_dim:
shape[bd] = 1
return x * self.dropout(x.new_ones(shape))
class EsmFoldSequenceToPair(nn.Module):
def __init__(self, sequence_state_dim, inner_dim, pairwise_state_dim):
super().__init__()
self.layernorm = nn.LayerNorm(sequence_state_dim)
self.proj = nn.Linear(sequence_state_dim, inner_dim * 2, bias=True)
self.o_proj = nn.Linear(2 * inner_dim, pairwise_state_dim, bias=True)
torch.nn.init.zeros_(self.proj.bias)
torch.nn.init.zeros_(self.o_proj.bias)
def forward(self, sequence_state):
"""
Inputs:
sequence_state: B x L x sequence_state_dim
Output:
pairwise_state: B x L x L x pairwise_state_dim
Intermediate state:
B x L x L x 2*inner_dim
"""
assert len(sequence_state.shape) == 3
s = self.layernorm(sequence_state)
s = self.proj(s)
q, k = s.chunk(2, dim=-1)
prod = q[:, None, :, :] * k[:, :, None, :]
diff = q[:, None, :, :] - k[:, :, None, :]
x = torch.cat([prod, diff], dim=-1)
x = self.o_proj(x)
return x
class EsmFoldPairToSequence(nn.Module):
def __init__(self, pairwise_state_dim, num_heads):
super().__init__()
self.layernorm = nn.LayerNorm(pairwise_state_dim)
self.linear = nn.Linear(pairwise_state_dim, num_heads, bias=False)
def forward(self, pairwise_state):
"""
Inputs:
pairwise_state: B x L x L x pairwise_state_dim
Output:
pairwise_bias: B x L x L x num_heads
"""
assert len(pairwise_state.shape) == 4
z = self.layernorm(pairwise_state)
pairwise_bias = self.linear(z)
return pairwise_bias
class EsmFoldResidueMLP(nn.Module):
def __init__(self, embed_dim, inner_dim, dropout=0):
super().__init__()
self.mlp = nn.Sequential(
nn.LayerNorm(embed_dim),
nn.Linear(embed_dim, inner_dim),
nn.ReLU(),
nn.Linear(inner_dim, embed_dim),
nn.Dropout(dropout),
)
def forward(self, x):
return x + self.mlp(x)
class EsmFoldTriangularSelfAttentionBlock(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
sequence_state_dim = config.sequence_state_dim
pairwise_state_dim = config.pairwise_state_dim
sequence_num_heads = sequence_state_dim // config.sequence_head_width
pairwise_num_heads = pairwise_state_dim // config.pairwise_head_width
self.layernorm_1 = nn.LayerNorm(sequence_state_dim)
self.sequence_to_pair = EsmFoldSequenceToPair(sequence_state_dim, pairwise_state_dim // 2, pairwise_state_dim)
self.pair_to_sequence = EsmFoldPairToSequence(pairwise_state_dim, sequence_num_heads)
self.seq_attention = EsmFoldSelfAttention(
sequence_state_dim, sequence_num_heads, config.sequence_head_width, gated=True
)
self.tri_mul_out = EsmFoldTriangleMultiplicativeUpdate(config, _outgoing=True)
self.tri_mul_in = EsmFoldTriangleMultiplicativeUpdate(config, _outgoing=False)
self.tri_att_start = EsmFoldTriangleAttention(
pairwise_state_dim, config.pairwise_head_width, pairwise_num_heads, inf=1e9, starting=True
)
self.tri_att_end = EsmFoldTriangleAttention(
pairwise_state_dim, config.pairwise_head_width, pairwise_num_heads, inf=1e9, starting=False
)
self.mlp_seq = EsmFoldResidueMLP(sequence_state_dim, 4 * sequence_state_dim, dropout=config.dropout)
self.mlp_pair = EsmFoldResidueMLP(pairwise_state_dim, 4 * pairwise_state_dim, dropout=config.dropout)
self.drop = nn.Dropout(config.dropout)
self.row_drop = EsmFoldDropout(config.dropout * 2, 2)
self.col_drop = EsmFoldDropout(config.dropout * 2, 1)
def forward(self, sequence_state, pairwise_state, mask=None, chunk_size=None, **__kwargs):
"""
Inputs:
sequence_state: B x L x sequence_state_dim pairwise_state: B x L x L x pairwise_state_dim mask: B x L boolean
tensor of valid positions
Output:
sequence_state: B x L x sequence_state_dim pairwise_state: B x L x L x pairwise_state_dim
"""
if len(sequence_state.shape) != 3:
raise ValueError(f"`sequence_state` should be a 3d-tensor, got {len(sequence_state.shape)} dims.")
if len(pairwise_state.shape) != 4:
raise ValueError(f"`pairwise_state` should be a 4d-tensor, got {len(pairwise_state.shape)} dims.")
if mask is not None and len(mask.shape) != 2:
raise ValueError(f"`mask` should be a 2d-tensor, got {len(mask.shape)} dims.")
batch_dim, seq_dim, sequence_state_dim = sequence_state.shape
pairwise_state_dim = pairwise_state.shape[3]
if sequence_state_dim != self.config.sequence_state_dim:
raise ValueError(
"`sequence_state` last dimension should be equal to `self.sequence_state_dim`. Got "
f"{sequence_state_dim} != {self.config.sequence_state_dim}."
)
if pairwise_state_dim != self.config.pairwise_state_dim:
raise ValueError(
"`pairwise_state` last dimension should be equal to `self.pairwise_state_dim`. Got "
f"{pairwise_state_dim} != {self.config.pairwise_state_dim}."
)
if batch_dim != pairwise_state.shape[0]:
raise ValueError(
f"`sequence_state` and `pairwise_state` have inconsistent batch size: {batch_dim} != "
f"{pairwise_state.shape[0]}."
)
if seq_dim != pairwise_state.shape[1] or seq_dim != pairwise_state.shape[2]:
raise ValueError(
f"`sequence_state` and `pairwise_state` have inconsistent sequence length: {seq_dim} != "
f"{pairwise_state.shape[1]} or {pairwise_state.shape[2]}."
)
# Update sequence state
bias = self.pair_to_sequence(pairwise_state)
# Self attention with bias + mlp.
y = self.layernorm_1(sequence_state)
y, _ = self.seq_attention(y, mask=mask, bias=bias)
sequence_state = sequence_state + self.drop(y)
sequence_state = self.mlp_seq(sequence_state)
# Update pairwise state
pairwise_state = pairwise_state + self.sequence_to_pair(sequence_state)
# Axial attention with triangular bias.
tri_mask = mask.unsqueeze(2) * mask.unsqueeze(1) if mask is not None else None
pairwise_state = pairwise_state + self.row_drop(self.tri_mul_out(pairwise_state, mask=tri_mask))
pairwise_state = pairwise_state + self.col_drop(self.tri_mul_in(pairwise_state, mask=tri_mask))
pairwise_state = pairwise_state + self.row_drop(
self.tri_att_start(pairwise_state, mask=tri_mask, chunk_size=chunk_size)
)
pairwise_state = pairwise_state + self.col_drop(
self.tri_att_end(pairwise_state, mask=tri_mask, chunk_size=chunk_size)
)
# MLP over pairs.
pairwise_state = self.mlp_pair(pairwise_state)
return sequence_state, pairwise_state
class EsmCategoricalMixture:
def __init__(self, param, bins=50, start=0, end=1):
# All tensors are of shape ..., bins.
self.logits = param
bins = torch.linspace(start, end, bins + 1, device=self.logits.device, dtype=self.logits.dtype)
self.v_bins = (bins[:-1] + bins[1:]) / 2
def log_prob(self, true):
# Shapes are:
# self.probs: ... x bins
# true : ...
true_index = (true.unsqueeze(-1) - self.v_bins[[None] * true.ndim]).abs().argmin(-1)
nll = self.logits.log_softmax(-1)
return torch.take_along_dim(nll, true_index.unsqueeze(-1), dim=-1).squeeze(-1)
def mean(self):
return (self.logits.softmax(-1) @ self.v_bins.unsqueeze(1)).squeeze(-1)
def categorical_lddt(logits, bins=50):
# Logits are ..., 37, bins.
return EsmCategoricalMixture(logits, bins=bins).mean()
def get_axial_mask(mask):
"""
Helper to convert B x L mask of valid positions to axial mask used in row column attentions.
Input:
mask: B x L tensor of booleans
Output:
mask: B x L x L tensor of booleans
"""
if mask is None:
return None
if len(mask.shape) != 2:
raise ValueError(f"`mask` should be a 2d-tensor, got {len(mask.shape)} dims.")
batch_dim, seq_dim = mask.shape
m = mask.unsqueeze(1).expand(batch_dim, seq_dim, seq_dim)
m = m.reshape(batch_dim * seq_dim, seq_dim)
return m
class EsmFoldRelativePosition(nn.Module):
def __init__(self, config):
super().__init__()
self.bins = config.position_bins
# Note an additional offset is used so that the 0th position
# is reserved for masked pairs.
self.embedding = torch.nn.Embedding(2 * self.bins + 2, config.pairwise_state_dim)
def forward(self, residue_index, mask=None):
"""
Input:
residue_index: B x L tensor of indices (dytpe=torch.long) mask: B x L tensor of booleans
Output:
pairwise_state: B x L x L x pairwise_state_dim tensor of embeddings
"""
if residue_index.dtype != torch.long:
raise ValueError(f"`residue_index` has dtype {residue_index.dtype}, it should be `torch.long`.")
if mask is not None and residue_index.shape != mask.shape:
raise ValueError(
f"`residue_index` and `mask` have inconsistent shapes: {residue_index.shape} != {mask.shape}."
)
diff = residue_index[:, None, :] - residue_index[:, :, None]
diff = diff.clamp(-self.bins, self.bins)
diff = diff + self.bins + 1 # Add 1 to adjust for padding index.
if mask is not None:
mask = mask[:, None, :] * mask[:, :, None]
diff[mask == False] = 0 # noqa: E712
output = self.embedding(diff)
return output
class EsmFoldAngleResnetBlock(nn.Module):
def __init__(self, config):
super().__init__()
self.linear_1 = EsmFoldLinear(config.resnet_dim, config.resnet_dim, init="relu")
self.linear_2 = EsmFoldLinear(config.resnet_dim, config.resnet_dim, init="final")
self.relu = nn.ReLU()
def forward(self, a: torch.Tensor) -> torch.Tensor:
s_initial = a
a = self.relu(a)
a = self.linear_1(a)
a = self.relu(a)
a = self.linear_2(a)
return a + s_initial
class EsmFoldAngleResnet(nn.Module):
"""
Implements Algorithm 20, lines 11-14
"""
def __init__(self, config):
super().__init__()
self.config = config
self.linear_in = EsmFoldLinear(config.sequence_dim, config.resnet_dim)
self.linear_initial = EsmFoldLinear(config.sequence_dim, config.resnet_dim)
self.layers = nn.ModuleList()
for _ in range(config.num_resnet_blocks):
layer = EsmFoldAngleResnetBlock(config)
self.layers.append(layer)
self.linear_out = EsmFoldLinear(config.resnet_dim, config.num_angles * 2)
self.relu = nn.ReLU()
def forward(self, s: torch.Tensor, s_initial: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor]:
"""
Args:
s:
[*, C_hidden] single embedding
s_initial:
[*, C_hidden] single embedding as of the start of the StructureModule
Returns:
[*, no_angles, 2] predicted angles
"""
# NOTE: The ReLU's applied to the inputs are absent from the supplement
# pseudocode but present in the source. For maximal compatibility with
# the pretrained weights, I'm going with the source.
# [*, C_hidden]
s_initial = self.relu(s_initial)
s_initial = self.linear_initial(s_initial)
s = self.relu(s)
s = self.linear_in(s)
s = s + s_initial
for l in self.layers:
s = l(s)
s = self.relu(s)
# [*, no_angles * 2]
s = self.linear_out(s)
# [*, no_angles, 2]
s = s.view(s.shape[:-1] + (-1, 2))
unnormalized_s = s
norm_denom = torch.sqrt(
torch.clamp(
torch.sum(s**2, dim=-1, keepdim=True),
min=self.config.epsilon,
)
)
s = s / norm_denom
return unnormalized_s, s
class EsmFoldInvariantPointAttention(nn.Module):
"""
Implements Algorithm 22.
"""
def __init__(self, config):
super().__init__()
self.config = config
c_s = config.sequence_dim
c_z = config.pairwise_dim
self.hidden_dim = config.ipa_dim
self.num_heads = config.num_heads_ipa
self.num_qk_points = config.num_qk_points
self.num_v_points = config.num_v_points
# These linear layers differ from their specifications in the
# supplement. There, they lack bias and use Glorot initialization.
# Here as in the official source, they have bias and use the default
# Lecun initialization.
hc = config.ipa_dim * config.num_heads_ipa
self.linear_q = EsmFoldLinear(c_s, hc)
self.linear_kv = EsmFoldLinear(c_s, 2 * hc)
hpq = config.num_heads_ipa * config.num_qk_points * 3
self.linear_q_points = EsmFoldLinear(c_s, hpq)
hpkv = config.num_heads_ipa * (config.num_qk_points + config.num_v_points) * 3
self.linear_kv_points = EsmFoldLinear(c_s, hpkv)
self.linear_b = EsmFoldLinear(c_z, config.num_heads_ipa)
self.head_weights = nn.Parameter(torch.zeros((config.num_heads_ipa)))
concat_out_dim = config.num_heads_ipa * (c_z + config.ipa_dim + config.num_v_points * 4)
self.linear_out = EsmFoldLinear(concat_out_dim, c_s, init="final")
self.softmax = nn.Softmax(dim=-1)
self.softplus = nn.Softplus()
def forward(
self,
s: torch.Tensor,
z: Optional[torch.Tensor],
r: Rigid,
mask: torch.Tensor,
_offload_inference: bool = False,
_z_reference_list: Optional[Sequence[torch.Tensor]] = None,
) -> torch.Tensor:
"""
Args:
s:
[*, N_res, C_s] single representation
z:
[*, N_res, N_res, C_z] pair representation
r:
[*, N_res] transformation object
mask:
[*, N_res] mask
Returns:
[*, N_res, C_s] single representation update
"""
z = [z]
#######################################
# Generate scalar and point activations
#######################################
# [*, N_res, H * C_hidden]
q = self.linear_q(s)
kv = self.linear_kv(s)
# [*, N_res, H, C_hidden]
q = q.view(q.shape[:-1] + (self.num_heads, -1))
# [*, N_res, H, 2 * C_hidden]
kv = kv.view(kv.shape[:-1] + (self.num_heads, -1))
# [*, N_res, H, C_hidden]
k, v = torch.split(kv, self.hidden_dim, dim=-1)
# [*, N_res, H * P_q * 3]
q_pts = self.linear_q_points(s)
# This is kind of clunky, but it's how the original does it
# [*, N_res, H * P_q, 3]
q_pts = torch.split(q_pts, q_pts.shape[-1] // 3, dim=-1)
q_pts = torch.stack(q_pts, dim=-1)
q_pts = r[..., None].apply(q_pts)
# [*, N_res, H, P_q, 3]
q_pts = q_pts.view(q_pts.shape[:-2] + (self.num_heads, self.num_qk_points, 3))
# [*, N_res, H * (P_q + P_v) * 3]
kv_pts = self.linear_kv_points(s)
# [*, N_res, H * (P_q + P_v), 3]
kv_pts = torch.split(kv_pts, kv_pts.shape[-1] // 3, dim=-1)
kv_pts = torch.stack(kv_pts, dim=-1)
kv_pts = r[..., None].apply(kv_pts)
# [*, N_res, H, (P_q + P_v), 3]
kv_pts = kv_pts.view(kv_pts.shape[:-2] + (self.num_heads, -1, 3))
# [*, N_res, H, P_q/P_v, 3]
k_pts, v_pts = torch.split(kv_pts, [self.num_qk_points, self.num_v_points], dim=-2)
##########################
# Compute attention scores
##########################
# [*, N_res, N_res, H]
b = self.linear_b(z[0])
if _offload_inference:
assert sys.getrefcount(z[0]) == 2
z[0] = z[0].cpu()
# [*, H, N_res, N_res]
if is_fp16_enabled():
with torch.cuda.amp.autocast(enabled=False):
a = torch.matmul(
permute_final_dims(q.float(), (1, 0, 2)), # [*, H, N_res, C_hidden]
permute_final_dims(k.float(), (1, 2, 0)), # [*, H, C_hidden, N_res]
)
else:
a = torch.matmul(
permute_final_dims(q, (1, 0, 2)), # [*, H, N_res, C_hidden]
permute_final_dims(k, (1, 2, 0)), # [*, H, C_hidden, N_res]
)
a *= math.sqrt(1.0 / (3 * self.hidden_dim))
a += math.sqrt(1.0 / 3) * permute_final_dims(b, (2, 0, 1))
# [*, N_res, N_res, H, P_q, 3]
pt_att = q_pts.unsqueeze(-4) - k_pts.unsqueeze(-5)
pt_att = pt_att**2
# [*, N_res, N_res, H, P_q]
pt_att = sum(torch.unbind(pt_att, dim=-1))
head_weights = self.softplus(self.head_weights).view(*((1,) * len(pt_att.shape[:-2]) + (-1, 1)))
head_weights = head_weights * math.sqrt(1.0 / (3 * (self.num_qk_points * 9.0 / 2)))
pt_att = pt_att * head_weights
# [*, N_res, N_res, H]
pt_att = torch.sum(pt_att, dim=-1) * (-0.5)
# [*, N_res, N_res]
square_mask = mask.unsqueeze(-1) * mask.unsqueeze(-2)
square_mask = self.config.inf * (square_mask - 1)
# [*, H, N_res, N_res]
pt_att = permute_final_dims(pt_att, (2, 0, 1))
a = a + pt_att
a = a + square_mask.unsqueeze(-3)
a = self.softmax(a)
################
# Compute output
################
# [*, N_res, H, C_hidden]
o = torch.matmul(a, v.transpose(-2, -3).to(dtype=a.dtype)).transpose(-2, -3)
# [*, N_res, H * C_hidden]
o = flatten_final_dims(o, 2)
# [*, H, 3, N_res, P_v]
o_pt = torch.sum(
(a[..., None, :, :, None] * permute_final_dims(v_pts, (1, 3, 0, 2))[..., None, :, :]),
dim=-2,
)
# [*, N_res, H, P_v, 3]
o_pt = permute_final_dims(o_pt, (2, 0, 3, 1))
o_pt = r[..., None, None].invert_apply(o_pt)
# [*, N_res, H * P_v]
o_pt_norm = flatten_final_dims(torch.sqrt(torch.sum(o_pt**2, dim=-1) + self.config.epsilon), 2)
# [*, N_res, H * P_v, 3]
o_pt = o_pt.reshape(*o_pt.shape[:-3], -1, 3)
if _offload_inference:
z[0] = z[0].to(o_pt.device)
# [*, N_res, H, C_z]
o_pair = torch.matmul(a.transpose(-2, -3), z[0].to(dtype=a.dtype))
# [*, N_res, H * C_z]
o_pair = flatten_final_dims(o_pair, 2)
# [*, N_res, C_s]
s = self.linear_out(
torch.cat((o, *torch.unbind(o_pt, dim=-1), o_pt_norm, o_pair), dim=-1).to(dtype=z[0].dtype)
)
return s
class EsmFoldBackboneUpdate(nn.Module):
"""
Implements part of Algorithm 23.
"""
def __init__(self, config):
super().__init__()
self.linear = EsmFoldLinear(config.sequence_dim, 6, init="final")
def forward(self, s: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor]:
"""
Args:
[*, N_res, C_s] single representation
Returns:
[*, N_res, 6] update vector
"""
# [*, 6]
update = self.linear(s)
return update
class EsmFoldStructureModuleTransitionLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.linear_1 = EsmFoldLinear(config.sequence_dim, config.sequence_dim, init="relu")
self.linear_2 = EsmFoldLinear(config.sequence_dim, config.sequence_dim, init="relu")
self.linear_3 = EsmFoldLinear(config.sequence_dim, config.sequence_dim, init="final")
self.relu = nn.ReLU()
def forward(self, s):
s_initial = s
s = self.linear_1(s)
s = self.relu(s)
s = self.linear_2(s)
s = self.relu(s)
s = self.linear_3(s)
s = s + s_initial
return s
class EsmFoldStructureModuleTransition(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layers = nn.ModuleList()
for _ in range(config.num_transition_layers):
l = EsmFoldStructureModuleTransitionLayer(config)
self.layers.append(l)
self.dropout = nn.Dropout(config.dropout_rate)
self.layer_norm = LayerNorm(config.sequence_dim)
def forward(self, s):
for l in self.layers:
s = l(s)
s = self.dropout(s)
s = self.layer_norm(s)
return s
class EsmFoldStructureModule(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
# Buffers to be lazily initialized later
# self.default_frames
# self.group_idx
# self.atom_mask
# self.lit_positions
self.layer_norm_s = LayerNorm(config.sequence_dim)
self.layer_norm_z = LayerNorm(config.pairwise_dim)
self.linear_in = EsmFoldLinear(config.sequence_dim, config.sequence_dim)
self.ipa = EsmFoldInvariantPointAttention(config)
self.ipa_dropout = nn.Dropout(config.dropout_rate)
self.layer_norm_ipa = LayerNorm(config.sequence_dim)
self.transition = EsmFoldStructureModuleTransition(config)
self.bb_update = EsmFoldBackboneUpdate(config)
self.angle_resnet = EsmFoldAngleResnet(config)
def forward(
self,
evoformer_output_dict,
aatype,
mask=None,
_offload_inference=False,
):
"""
Args:
evoformer_output_dict:
Dictionary containing:
"single":
[*, N_res, C_s] single representation
"pair":
[*, N_res, N_res, C_z] pair representation
aatype:
[*, N_res] amino acid indices
mask:
Optional [*, N_res] sequence mask
Returns:
A dictionary of outputs
"""
s = evoformer_output_dict["single"]
if mask is None:
# [*, N]
mask = s.new_ones(s.shape[:-1])
# [*, N, C_s]
s = self.layer_norm_s(s)
# [*, N, N, C_z]
z = self.layer_norm_z(evoformer_output_dict["pair"])
z_reference_list = None
if _offload_inference:
assert sys.getrefcount(evoformer_output_dict["pair"]) == 2
evoformer_output_dict["pair"] = evoformer_output_dict["pair"].cpu()
z_reference_list = [z]
z = None
# [*, N, C_s]
s_initial = s
s = self.linear_in(s)
# [*, N]
rigids = Rigid.identity(
s.shape[:-1],
s.dtype,
s.device,
self.training,
fmt="quat",
)
outputs = []
for i in range(self.config.num_blocks):
# [*, N, C_s]
s = s + self.ipa(
s,
z,
rigids,
mask,
_offload_inference=_offload_inference,
_z_reference_list=z_reference_list,
)
s = self.ipa_dropout(s)
s = self.layer_norm_ipa(s)
s = self.transition(s)
# [*, N]
rigids = rigids.compose_q_update_vec(self.bb_update(s))
# To hew as closely as possible to AlphaFold, we convert our
# quaternion-based transformations to rotation-matrix ones
# here
backb_to_global = Rigid(
Rotation(rot_mats=rigids.get_rots().get_rot_mats(), quats=None),
rigids.get_trans(),
)
backb_to_global = backb_to_global.scale_translation(self.config.trans_scale_factor)
# [*, N, 7, 2]
unnormalized_angles, angles = self.angle_resnet(s, s_initial)
all_frames_to_global = self.torsion_angles_to_frames(backb_to_global, angles, aatype)
pred_xyz = self.frames_and_literature_positions_to_atom14_pos(all_frames_to_global, aatype)
scaled_rigids = rigids.scale_translation(self.config.trans_scale_factor)
preds = {
"frames": scaled_rigids.to_tensor_7(),
"sidechain_frames": all_frames_to_global.to_tensor_4x4(),
"unnormalized_angles": unnormalized_angles,
"angles": angles,
"positions": pred_xyz,
"states": s,
}
outputs.append(preds)
rigids = rigids.stop_rot_gradient()
del z, z_reference_list
if _offload_inference:
evoformer_output_dict["pair"] = evoformer_output_dict["pair"].to(s.device)
outputs = dict_multimap(torch.stack, outputs)
outputs["single"] = s
return outputs
def _init_residue_constants(self, float_dtype, device):
if not hasattr(self, "default_frames"):
self.register_buffer(
"default_frames",
torch.tensor(
residue_constants.restype_rigid_group_default_frame,
dtype=float_dtype,
device=device,
requires_grad=False,
),
persistent=False,
)
if not hasattr(self, "group_idx"):
self.register_buffer(
"group_idx",
torch.tensor(
residue_constants.restype_atom14_to_rigid_group,
device=device,
requires_grad=False,
),
persistent=False,
)
if not hasattr(self, "atom_mask"):
self.register_buffer(
"atom_mask",
torch.tensor(
residue_constants.restype_atom14_mask,
dtype=float_dtype,
device=device,
requires_grad=False,
),
persistent=False,
)
if not hasattr(self, "lit_positions"):
self.register_buffer(
"lit_positions",
torch.tensor(
residue_constants.restype_atom14_rigid_group_positions,
dtype=float_dtype,
device=device,
requires_grad=False,
),
persistent=False,
)
def torsion_angles_to_frames(self, r, alpha, f):
# Lazily initialize the residue constants on the correct device
self._init_residue_constants(alpha.dtype, alpha.device)
# Separated purely to make testing less annoying
return torsion_angles_to_frames(r, alpha, f, self.default_frames)
def frames_and_literature_positions_to_atom14_pos(self, r, f): # [*, N, 8] # [*, N]
# Lazily initialize the residue constants on the correct device
self._init_residue_constants(r.get_rots().dtype, r.get_rots().device)
return frames_and_literature_positions_to_atom14_pos(
r,
f,
self.default_frames,
self.group_idx,
self.atom_mask,
self.lit_positions,
)
class EsmFoldingTrunk(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
c_s = config.sequence_state_dim
c_z = config.pairwise_state_dim
self.pairwise_positional_embedding = EsmFoldRelativePosition(config)
self.blocks = nn.ModuleList([EsmFoldTriangularSelfAttentionBlock(config) for _ in range(config.num_blocks)])
self.recycle_bins = 15
self.recycle_s_norm = nn.LayerNorm(c_s)
self.recycle_z_norm = nn.LayerNorm(c_z)
self.recycle_disto = nn.Embedding(self.recycle_bins, c_z)
self.recycle_disto.weight[0].detach().zero_()
self.structure_module = EsmFoldStructureModule(config.structure_module)
self.trunk2sm_s = nn.Linear(c_s, config.structure_module.sequence_dim)
self.trunk2sm_z = nn.Linear(c_z, config.structure_module.pairwise_dim)
self.chunk_size = config.chunk_size
def set_chunk_size(self, chunk_size):
# This parameter means the axial attention will be computed
# in a chunked manner. This should make the memory used more or less O(L) instead of O(L^2).
# It's equivalent to running a for loop over chunks of the dimension we're iterative over,
# where the chunk_size is the size of the chunks, so 128 would mean to parse 128-lengthed chunks.
self.chunk_size = chunk_size
def forward(self, seq_feats, pair_feats, true_aa, residx, mask, no_recycles):
"""
Inputs:
seq_feats: B x L x C tensor of sequence features pair_feats: B x L x L x C tensor of pair features residx: B
x L long tensor giving the position in the sequence mask: B x L boolean tensor indicating valid residues
Output:
predicted_structure: B x L x (num_atoms_per_residue * 3) tensor wrapped in a Coordinates object
"""
device = seq_feats.device
s_s_0 = seq_feats
s_z_0 = pair_feats
if no_recycles is None:
no_recycles = self.config.max_recycles
else:
if no_recycles < 0:
raise ValueError("Number of recycles must not be negative.")
no_recycles += 1 # First 'recycle' is just the standard forward pass through the model.
def trunk_iter(s, z, residx, mask):
z = z + self.pairwise_positional_embedding(residx, mask=mask)
for block in self.blocks:
s, z = block(s, z, mask=mask, residue_index=residx, chunk_size=self.chunk_size)
return s, z
s_s = s_s_0
s_z = s_z_0
recycle_s = torch.zeros_like(s_s)
recycle_z = torch.zeros_like(s_z)
recycle_bins = torch.zeros(*s_z.shape[:-1], device=device, dtype=torch.int64)
for recycle_idx in range(no_recycles):
with ContextManagers([] if recycle_idx == no_recycles - 1 else [torch.no_grad()]):
# === Recycling ===
recycle_s = self.recycle_s_norm(recycle_s.detach()).to(device)
recycle_z = self.recycle_z_norm(recycle_z.detach()).to(device)
recycle_z += self.recycle_disto(recycle_bins.detach()).to(device)
s_s, s_z = trunk_iter(s_s_0 + recycle_s, s_z_0 + recycle_z, residx, mask)
# === Structure module ===
structure = self.structure_module(
{"single": self.trunk2sm_s(s_s), "pair": self.trunk2sm_z(s_z)},
true_aa,
mask.float(),
)
recycle_s = s_s
recycle_z = s_z
# Distogram needs the N, CA, C coordinates, and bin constants same as alphafold.
recycle_bins = EsmFoldingTrunk.distogram(
structure["positions"][-1][:, :, :3],
3.375,
21.375,
self.recycle_bins,
)
structure["s_s"] = s_s
structure["s_z"] = s_z
return structure
@staticmethod
def distogram(coords, min_bin, max_bin, num_bins):
# Coords are [... L x 3 x 3], where it's [N, CA, C] x 3 coordinates.
boundaries = torch.linspace(
min_bin,
max_bin,
num_bins - 1,
device=coords.device,
)
boundaries = boundaries**2
N, CA, C = [x.squeeze(-2) for x in coords.chunk(3, dim=-2)]
# Infer CB coordinates.
b = CA - N
c = C - CA
a = b.cross(c, dim=-1)
CB = -0.58273431 * a + 0.56802827 * b - 0.54067466 * c + CA
dists = (CB[..., None, :, :] - CB[..., :, None, :]).pow(2).sum(dim=-1, keepdims=True)
bins = torch.sum(dists > boundaries, dim=-1) # [..., L, L]
return bins
# TODO Add information to the docstring about any methods that convert to PDB format, or otherwise prepare
# the outputs for downstream use.
@add_start_docstrings(
"""
ESMForProteinFolding is the HuggingFace port of the original ESMFold model. It consists of an ESM-2 "stem" followed
by a protein folding "head", although unlike most other output heads, this "head" is similar in size and runtime to
the rest of the model combined! It outputs a dictionary containing predicted structural information about the input
protein(s).
""",
ESM_START_DOCSTRING,
)
class EsmForProteinFolding(EsmPreTrainedModel):
_no_split_modules = ["EsmFoldStructureModule", "EsmFoldTriangularSelfAttentionBlock"]
def __init__(self, config):
super().__init__(config)
self.config = config
self.distogram_bins = 64
self.esm = EsmModel(config, add_pooling_layer=False)
self.esm.requires_grad_(False)
if self.config.esmfold_config.fp16_esm:
self.esm.half()
self.esm_feats = self.config.hidden_size
self.esm_attns = self.config.num_hidden_layers * self.config.num_attention_heads
self.esm_layers = self.config.num_hidden_layers
self.register_buffer("af2_to_esm", self._af2_to_esm_from_vocab_list(config.vocab_list))
self.esm_s_combine = nn.Parameter(torch.zeros(self.esm_layers + 1))
trunk_config = self.config.esmfold_config.trunk
c_s = trunk_config.sequence_state_dim
c_z = trunk_config.pairwise_state_dim
self.esm_s_mlp = nn.Sequential(
LayerNorm(self.esm_feats),
nn.Linear(self.esm_feats, c_s),
nn.ReLU(),
nn.Linear(c_s, c_s),
)
# 0 is padding, N is unknown residues, N + 1 is mask.
self.n_tokens_embed = residue_constants.restype_num + 3
self.pad_idx = 0
self.unk_idx = self.n_tokens_embed - 2
self.mask_idx = self.n_tokens_embed - 1
self.esm_dict_cls_idx = self.config.vocab_list.index("<cls>")
self.esm_dict_mask_idx = self.config.vocab_list.index("<mask>")
self.esm_dict_eos_idx = self.config.vocab_list.index("<eos>")
self.esm_dict_padding_idx = self.config.vocab_list.index("<pad>")
if self.config.esmfold_config.embed_aa:
self.embedding = nn.Embedding(self.n_tokens_embed, c_s, padding_idx=0)
self.trunk = EsmFoldingTrunk(trunk_config)
self.distogram_head = nn.Linear(c_z, self.distogram_bins)
self.ptm_head = nn.Linear(c_z, self.distogram_bins)
self.lm_head = nn.Linear(c_s, self.n_tokens_embed)
self.lddt_bins = 50
structure_module_config = trunk_config.structure_module
self.lddt_head = nn.Sequential(
nn.LayerNorm(structure_module_config.sequence_dim),
nn.Linear(structure_module_config.sequence_dim, self.config.esmfold_config.lddt_head_hid_dim),
nn.Linear(self.config.esmfold_config.lddt_head_hid_dim, self.config.esmfold_config.lddt_head_hid_dim),
nn.Linear(self.config.esmfold_config.lddt_head_hid_dim, 37 * self.lddt_bins),
)
@staticmethod
def _af2_to_esm_from_vocab_list(vocab_list: List[str]) -> torch.Tensor:
# Remember that t is shifted from residue_constants by 1 (0 is padding).
esm_reorder = [vocab_list.index("<pad>")] + [vocab_list.index(v) for v in residue_constants.restypes_with_x]
return torch.tensor(esm_reorder)
@add_start_docstrings_to_model_forward(ESMFOLD_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=EsmForProteinFoldingOutput, config_class=EsmConfig)
def forward(
self,
input_ids: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
masking_pattern: Optional[torch.Tensor] = None,
num_recycles: Optional[int] = None,
) -> EsmForProteinFoldingOutput:
r"""
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, EsmForProteinFolding
>>> model = EsmForProteinFolding.from_pretrained("facebook/esmfold_v1")
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/esmfold_v1")
>>> inputs = tokenizer(["MLKNVQVQLV"], return_tensors="pt", add_special_tokens=False) # A tiny random peptide
>>> outputs = model(**inputs)
>>> folded_positions = outputs.positions
```
"""
cfg = self.config.esmfold_config
aa = input_ids # B x L
B = aa.shape[0]
L = aa.shape[1]
device = input_ids.device
if attention_mask is None:
attention_mask = torch.ones_like(aa, device=device)
if position_ids is None:
position_ids = torch.arange(L, device=device).expand_as(input_ids)
# === ESM ===
esmaa = self.af2_idx_to_esm_idx(aa, attention_mask)
if masking_pattern is not None:
masked_aa, esmaa, mlm_targets = self.bert_mask(aa, esmaa, attention_mask, masking_pattern)
else:
masked_aa = aa
mlm_targets = None
# We get sequence and pair representations from whatever version of ESM /
# configuration we are using. The sequence representation esm_s is always
# present. The pair embedding esm_z may be present depending on the
# configuration of the model. If esm_z is not used by the model then it
# is returned as None here.
esm_s = self.compute_language_model_representations(esmaa)
# Convert esm_s and esm_z, if present, to the precision used by the trunk and
# the structure module. These tensors may be a lower precision if, for example,
# we're running the language model in fp16 precision.
esm_s = esm_s.to(self.esm_s_combine.dtype)
if cfg.esm_ablate_sequence:
esm_s = esm_s * 0
esm_s = esm_s.detach()
# === preprocessing ===
esm_s = (self.esm_s_combine.softmax(0).unsqueeze(0) @ esm_s).squeeze(2)
s_s_0 = self.esm_s_mlp(esm_s)
s_z_0 = s_s_0.new_zeros(B, L, L, cfg.trunk.pairwise_state_dim)
if self.config.esmfold_config.embed_aa:
s_s_0 += self.embedding(masked_aa)
structure: dict = self.trunk(s_s_0, s_z_0, aa, position_ids, attention_mask, no_recycles=num_recycles)
# Documenting what we expect:
structure = {
k: v
for k, v in structure.items()
if k
in [
"s_z",
"s_s",
"frames",
"sidechain_frames",
"unnormalized_angles",
"angles",
"positions",
"states",
]
}
# Add BERT mask for the loss to use, if available.
if mlm_targets:
structure["mlm_targets"] = mlm_targets
disto_logits = self.distogram_head(structure["s_z"])
disto_logits = (disto_logits + disto_logits.transpose(1, 2)) / 2
structure["distogram_logits"] = disto_logits
lm_logits = self.lm_head(structure["s_s"])
structure["lm_logits"] = lm_logits
structure["aatype"] = aa
make_atom14_masks(structure)
# Of course, this doesn't respect the true mask because it doesn't know about it...
# We're not going to properly mask change of index tensors:
# "residx_atom14_to_atom37",
# "residx_atom37_to_atom14",
for k in [
"atom14_atom_exists",
"atom37_atom_exists",
]:
structure[k] *= attention_mask.unsqueeze(-1)
structure["residue_index"] = position_ids
lddt_head = self.lddt_head(structure["states"]).reshape(structure["states"].shape[0], B, L, -1, self.lddt_bins)
structure["lddt_head"] = lddt_head
plddt = categorical_lddt(lddt_head[-1], bins=self.lddt_bins)
structure["plddt"] = plddt
ptm_logits = self.ptm_head(structure["s_z"])
structure["ptm_logits"] = ptm_logits
structure["ptm"] = compute_tm(ptm_logits, max_bin=31, no_bins=self.distogram_bins)
structure.update(compute_predicted_aligned_error(ptm_logits, max_bin=31, no_bins=self.distogram_bins))
return EsmForProteinFoldingOutput(**structure)
def af2_idx_to_esm_idx(self, aa, mask):
# avoid indexing on different devices
if self.af2_to_esm.device != aa.device:
self.af2_to_esm = self.af2_to_esm.to(aa.device)
aa = (aa + 1).masked_fill(mask != 1, 0)
return self.af2_to_esm[aa]
def compute_language_model_representations(self, esmaa: torch.Tensor) -> torch.Tensor:
device = next(self.parameters()).device
B, L = esmaa.shape # B = batch size, L = sequence length.
if self.config.esmfold_config.bypass_lm:
esm_s = torch.zeros(B, L, self.esm_s_combine.size[0], -1, self.esm_feats, device=device)
return esm_s
bosi, eosi = self.esm_dict_cls_idx, self.esm_dict_eos_idx
bos = esmaa.new_full((B, 1), bosi)
eos = esmaa.new_full((B, 1), self.esm_dict_padding_idx)
esmaa = torch.cat([bos, esmaa, eos], dim=1)
# Use the first padding index as eos during inference.
esmaa[range(B), (esmaa != 1).sum(1)] = eosi
# _, esm_z, esm_s = self.esm(esmaa, return_pairs=self.config.esmfold_config.use_esm_attn_map)
# Because we do not support use_esm_attn_map in the HF port as it is not used in any public models,
# esm_z is always None
esm_hidden_states = self.esm(esmaa, attention_mask=esmaa != 1, output_hidden_states=True)["hidden_states"]
esm_s = torch.stack(esm_hidden_states, dim=2)
esm_s = esm_s[:, 1:-1] # B, L, nLayers, C
return esm_s
def bert_mask(self, aa, esmaa, mask, pattern):
new_aa = aa.clone()
target = aa.clone()
new_esmaa = esmaa.clone()
new_aa[pattern == 1] = self.mask_idx
target[pattern != 1] = 0
new_esmaa[pattern == 1] = self.esm_dict_mask_idx
return new_aa, new_esmaa, target
@torch.no_grad()
def infer(
self,
seqs: Union[str, List[str]],
position_ids=None,
):
if isinstance(seqs, str):
lst = [seqs]
else:
lst = seqs
# Returns the raw outputs of the model given an input sequence.
device = next(self.parameters()).device
aatype = collate_dense_tensors(
[
torch.from_numpy(
residue_constants.sequence_to_onehot(
sequence=seq,
mapping=residue_constants.restype_order_with_x,
map_unknown_to_x=True,
)
)
.to(device)
.argmax(dim=1)
for seq in lst
]
) # B=1 x L
mask = collate_dense_tensors([aatype.new_ones(len(seq)) for seq in lst])
position_ids = (
torch.arange(aatype.shape[1], device=device).expand(len(lst), -1)
if position_ids is None
else position_ids.to(device)
)
if position_ids.ndim == 1:
position_ids = position_ids.unsqueeze(0)
return self.forward(
aatype,
mask,
position_ids=position_ids,
)
@staticmethod
def output_to_pdb(output: Dict) -> List[str]:
"""Returns the pbd (file) string from the model given the model output."""
output = {k: v.to("cpu").numpy() for k, v in output.items()}
pdbs = []
final_atom_positions = atom14_to_atom37(output["positions"][-1], output)
final_atom_mask = output["atom37_atom_exists"]
for i in range(output["aatype"].shape[0]):
aa = output["aatype"][i]
pred_pos = final_atom_positions[i]
mask = final_atom_mask[i]
resid = output["residue_index"][i] + 1
pred = OFProtein(
aatype=aa,
atom_positions=pred_pos,
atom_mask=mask,
residue_index=resid,
b_factors=output["plddt"][i],
)
pdbs.append(to_pdb(pred))
return pdbs
def infer_pdb(self, seqs, *args, **kwargs) -> str:
"""Returns the pdb (file) string from the model given an input sequence."""
assert isinstance(seqs, str)
output = self.infer(seqs, *args, **kwargs)
return self.output_to_pdb(output)[0]
def infer_pdbs(self, seqs: List[str], *args, **kwargs) -> List[str]:
"""Returns the pdb (file) string from the model given an input sequence."""
output = self.infer(seqs, *args, **kwargs)
return self.output_to_pdb(output)
| 0 |
hf_public_repos/transformers/src/transformers/models/esm | hf_public_repos/transformers/src/transformers/models/esm/openfold_utils/residue_constants.py | # Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Constants used in AlphaFold."""
import collections
import copy
import functools
from importlib import resources
from typing import Dict, List, Mapping, Sequence, Tuple
import numpy as np
# Internal import (35fd).
# Distance from one CA to next CA [trans configuration: omega = 180].
ca_ca = 3.80209737096
# Format: The list for each AA type contains chi1, chi2, chi3, chi4 in
# this order (or a relevant subset from chi1 onwards). ALA and GLY don't have
# chi angles so their chi angle lists are empty.
chi_angles_atoms: Dict[str, List[List[str]]] = {
"ALA": [],
# Chi5 in arginine is always 0 +- 5 degrees, so ignore it.
"ARG": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD"], ["CB", "CG", "CD", "NE"], ["CG", "CD", "NE", "CZ"]],
"ASN": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "OD1"]],
"ASP": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "OD1"]],
"CYS": [["N", "CA", "CB", "SG"]],
"GLN": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD"], ["CB", "CG", "CD", "OE1"]],
"GLU": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD"], ["CB", "CG", "CD", "OE1"]],
"GLY": [],
"HIS": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "ND1"]],
"ILE": [["N", "CA", "CB", "CG1"], ["CA", "CB", "CG1", "CD1"]],
"LEU": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD1"]],
"LYS": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD"], ["CB", "CG", "CD", "CE"], ["CG", "CD", "CE", "NZ"]],
"MET": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "SD"], ["CB", "CG", "SD", "CE"]],
"PHE": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD1"]],
"PRO": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD"]],
"SER": [["N", "CA", "CB", "OG"]],
"THR": [["N", "CA", "CB", "OG1"]],
"TRP": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD1"]],
"TYR": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD1"]],
"VAL": [["N", "CA", "CB", "CG1"]],
}
# If chi angles given in fixed-length array, this matrix determines how to mask
# them for each AA type. The order is as per restype_order (see below).
chi_angles_mask: List[List[float]] = [
[0.0, 0.0, 0.0, 0.0], # ALA
[1.0, 1.0, 1.0, 1.0], # ARG
[1.0, 1.0, 0.0, 0.0], # ASN
[1.0, 1.0, 0.0, 0.0], # ASP
[1.0, 0.0, 0.0, 0.0], # CYS
[1.0, 1.0, 1.0, 0.0], # GLN
[1.0, 1.0, 1.0, 0.0], # GLU
[0.0, 0.0, 0.0, 0.0], # GLY
[1.0, 1.0, 0.0, 0.0], # HIS
[1.0, 1.0, 0.0, 0.0], # ILE
[1.0, 1.0, 0.0, 0.0], # LEU
[1.0, 1.0, 1.0, 1.0], # LYS
[1.0, 1.0, 1.0, 0.0], # MET
[1.0, 1.0, 0.0, 0.0], # PHE
[1.0, 1.0, 0.0, 0.0], # PRO
[1.0, 0.0, 0.0, 0.0], # SER
[1.0, 0.0, 0.0, 0.0], # THR
[1.0, 1.0, 0.0, 0.0], # TRP
[1.0, 1.0, 0.0, 0.0], # TYR
[1.0, 0.0, 0.0, 0.0], # VAL
]
# The following chi angles are pi periodic: they can be rotated by a multiple
# of pi without affecting the structure.
chi_pi_periodic: List[List[float]] = [
[0.0, 0.0, 0.0, 0.0], # ALA
[0.0, 0.0, 0.0, 0.0], # ARG
[0.0, 0.0, 0.0, 0.0], # ASN
[0.0, 1.0, 0.0, 0.0], # ASP
[0.0, 0.0, 0.0, 0.0], # CYS
[0.0, 0.0, 0.0, 0.0], # GLN
[0.0, 0.0, 1.0, 0.0], # GLU
[0.0, 0.0, 0.0, 0.0], # GLY
[0.0, 0.0, 0.0, 0.0], # HIS
[0.0, 0.0, 0.0, 0.0], # ILE
[0.0, 0.0, 0.0, 0.0], # LEU
[0.0, 0.0, 0.0, 0.0], # LYS
[0.0, 0.0, 0.0, 0.0], # MET
[0.0, 1.0, 0.0, 0.0], # PHE
[0.0, 0.0, 0.0, 0.0], # PRO
[0.0, 0.0, 0.0, 0.0], # SER
[0.0, 0.0, 0.0, 0.0], # THR
[0.0, 0.0, 0.0, 0.0], # TRP
[0.0, 1.0, 0.0, 0.0], # TYR
[0.0, 0.0, 0.0, 0.0], # VAL
[0.0, 0.0, 0.0, 0.0], # UNK
]
# Atoms positions relative to the 8 rigid groups, defined by the pre-omega, phi,
# psi and chi angles:
# 0: 'backbone group',
# 1: 'pre-omega-group', (empty)
# 2: 'phi-group', (currently empty, because it defines only hydrogens)
# 3: 'psi-group',
# 4,5,6,7: 'chi1,2,3,4-group'
# The atom positions are relative to the axis-end-atom of the corresponding
# rotation axis. The x-axis is in direction of the rotation axis, and the y-axis
# is defined such that the dihedral-angle-definiting atom (the last entry in
# chi_angles_atoms above) is in the xy-plane (with a positive y-coordinate).
# format: [atomname, group_idx, rel_position]
rigid_group_atom_positions: Dict[str, List[Tuple[str, int, Tuple[float, float, float]]]] = {
"ALA": [
("N", 0, (-0.525, 1.363, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, -0.000, -0.000)),
("CB", 0, (-0.529, -0.774, -1.205)),
("O", 3, (0.627, 1.062, 0.000)),
],
"ARG": [
("N", 0, (-0.524, 1.362, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, -0.000, -0.000)),
("CB", 0, (-0.524, -0.778, -1.209)),
("O", 3, (0.626, 1.062, 0.000)),
("CG", 4, (0.616, 1.390, -0.000)),
("CD", 5, (0.564, 1.414, 0.000)),
("NE", 6, (0.539, 1.357, -0.000)),
("NH1", 7, (0.206, 2.301, 0.000)),
("NH2", 7, (2.078, 0.978, -0.000)),
("CZ", 7, (0.758, 1.093, -0.000)),
],
"ASN": [
("N", 0, (-0.536, 1.357, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, -0.000, -0.000)),
("CB", 0, (-0.531, -0.787, -1.200)),
("O", 3, (0.625, 1.062, 0.000)),
("CG", 4, (0.584, 1.399, 0.000)),
("ND2", 5, (0.593, -1.188, 0.001)),
("OD1", 5, (0.633, 1.059, 0.000)),
],
"ASP": [
("N", 0, (-0.525, 1.362, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.527, 0.000, -0.000)),
("CB", 0, (-0.526, -0.778, -1.208)),
("O", 3, (0.626, 1.062, -0.000)),
("CG", 4, (0.593, 1.398, -0.000)),
("OD1", 5, (0.610, 1.091, 0.000)),
("OD2", 5, (0.592, -1.101, -0.003)),
],
"CYS": [
("N", 0, (-0.522, 1.362, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.524, 0.000, 0.000)),
("CB", 0, (-0.519, -0.773, -1.212)),
("O", 3, (0.625, 1.062, -0.000)),
("SG", 4, (0.728, 1.653, 0.000)),
],
"GLN": [
("N", 0, (-0.526, 1.361, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, 0.000, 0.000)),
("CB", 0, (-0.525, -0.779, -1.207)),
("O", 3, (0.626, 1.062, -0.000)),
("CG", 4, (0.615, 1.393, 0.000)),
("CD", 5, (0.587, 1.399, -0.000)),
("NE2", 6, (0.593, -1.189, -0.001)),
("OE1", 6, (0.634, 1.060, 0.000)),
],
"GLU": [
("N", 0, (-0.528, 1.361, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, -0.000, -0.000)),
("CB", 0, (-0.526, -0.781, -1.207)),
("O", 3, (0.626, 1.062, 0.000)),
("CG", 4, (0.615, 1.392, 0.000)),
("CD", 5, (0.600, 1.397, 0.000)),
("OE1", 6, (0.607, 1.095, -0.000)),
("OE2", 6, (0.589, -1.104, -0.001)),
],
"GLY": [
("N", 0, (-0.572, 1.337, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.517, -0.000, -0.000)),
("O", 3, (0.626, 1.062, -0.000)),
],
"HIS": [
("N", 0, (-0.527, 1.360, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, 0.000, 0.000)),
("CB", 0, (-0.525, -0.778, -1.208)),
("O", 3, (0.625, 1.063, 0.000)),
("CG", 4, (0.600, 1.370, -0.000)),
("CD2", 5, (0.889, -1.021, 0.003)),
("ND1", 5, (0.744, 1.160, -0.000)),
("CE1", 5, (2.030, 0.851, 0.002)),
("NE2", 5, (2.145, -0.466, 0.004)),
],
"ILE": [
("N", 0, (-0.493, 1.373, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.527, -0.000, -0.000)),
("CB", 0, (-0.536, -0.793, -1.213)),
("O", 3, (0.627, 1.062, -0.000)),
("CG1", 4, (0.534, 1.437, -0.000)),
("CG2", 4, (0.540, -0.785, -1.199)),
("CD1", 5, (0.619, 1.391, 0.000)),
],
"LEU": [
("N", 0, (-0.520, 1.363, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, -0.000, -0.000)),
("CB", 0, (-0.522, -0.773, -1.214)),
("O", 3, (0.625, 1.063, -0.000)),
("CG", 4, (0.678, 1.371, 0.000)),
("CD1", 5, (0.530, 1.430, -0.000)),
("CD2", 5, (0.535, -0.774, 1.200)),
],
"LYS": [
("N", 0, (-0.526, 1.362, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, 0.000, 0.000)),
("CB", 0, (-0.524, -0.778, -1.208)),
("O", 3, (0.626, 1.062, -0.000)),
("CG", 4, (0.619, 1.390, 0.000)),
("CD", 5, (0.559, 1.417, 0.000)),
("CE", 6, (0.560, 1.416, 0.000)),
("NZ", 7, (0.554, 1.387, 0.000)),
],
"MET": [
("N", 0, (-0.521, 1.364, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, 0.000, 0.000)),
("CB", 0, (-0.523, -0.776, -1.210)),
("O", 3, (0.625, 1.062, -0.000)),
("CG", 4, (0.613, 1.391, -0.000)),
("SD", 5, (0.703, 1.695, 0.000)),
("CE", 6, (0.320, 1.786, -0.000)),
],
"PHE": [
("N", 0, (-0.518, 1.363, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.524, 0.000, -0.000)),
("CB", 0, (-0.525, -0.776, -1.212)),
("O", 3, (0.626, 1.062, -0.000)),
("CG", 4, (0.607, 1.377, 0.000)),
("CD1", 5, (0.709, 1.195, -0.000)),
("CD2", 5, (0.706, -1.196, 0.000)),
("CE1", 5, (2.102, 1.198, -0.000)),
("CE2", 5, (2.098, -1.201, -0.000)),
("CZ", 5, (2.794, -0.003, -0.001)),
],
"PRO": [
("N", 0, (-0.566, 1.351, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.527, -0.000, 0.000)),
("CB", 0, (-0.546, -0.611, -1.293)),
("O", 3, (0.621, 1.066, 0.000)),
("CG", 4, (0.382, 1.445, 0.0)),
# ('CD', 5, (0.427, 1.440, 0.0)),
("CD", 5, (0.477, 1.424, 0.0)), # manually made angle 2 degrees larger
],
"SER": [
("N", 0, (-0.529, 1.360, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, -0.000, -0.000)),
("CB", 0, (-0.518, -0.777, -1.211)),
("O", 3, (0.626, 1.062, -0.000)),
("OG", 4, (0.503, 1.325, 0.000)),
],
"THR": [
("N", 0, (-0.517, 1.364, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, 0.000, -0.000)),
("CB", 0, (-0.516, -0.793, -1.215)),
("O", 3, (0.626, 1.062, 0.000)),
("CG2", 4, (0.550, -0.718, -1.228)),
("OG1", 4, (0.472, 1.353, 0.000)),
],
"TRP": [
("N", 0, (-0.521, 1.363, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, -0.000, 0.000)),
("CB", 0, (-0.523, -0.776, -1.212)),
("O", 3, (0.627, 1.062, 0.000)),
("CG", 4, (0.609, 1.370, -0.000)),
("CD1", 5, (0.824, 1.091, 0.000)),
("CD2", 5, (0.854, -1.148, -0.005)),
("CE2", 5, (2.186, -0.678, -0.007)),
("CE3", 5, (0.622, -2.530, -0.007)),
("NE1", 5, (2.140, 0.690, -0.004)),
("CH2", 5, (3.028, -2.890, -0.013)),
("CZ2", 5, (3.283, -1.543, -0.011)),
("CZ3", 5, (1.715, -3.389, -0.011)),
],
"TYR": [
("N", 0, (-0.522, 1.362, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.524, -0.000, -0.000)),
("CB", 0, (-0.522, -0.776, -1.213)),
("O", 3, (0.627, 1.062, -0.000)),
("CG", 4, (0.607, 1.382, -0.000)),
("CD1", 5, (0.716, 1.195, -0.000)),
("CD2", 5, (0.713, -1.194, -0.001)),
("CE1", 5, (2.107, 1.200, -0.002)),
("CE2", 5, (2.104, -1.201, -0.003)),
("OH", 5, (4.168, -0.002, -0.005)),
("CZ", 5, (2.791, -0.001, -0.003)),
],
"VAL": [
("N", 0, (-0.494, 1.373, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.527, -0.000, -0.000)),
("CB", 0, (-0.533, -0.795, -1.213)),
("O", 3, (0.627, 1.062, -0.000)),
("CG1", 4, (0.540, 1.429, -0.000)),
("CG2", 4, (0.533, -0.776, 1.203)),
],
}
# A list of atoms (excluding hydrogen) for each AA type. PDB naming convention.
residue_atoms: Dict[str, List[str]] = {
"ALA": ["C", "CA", "CB", "N", "O"],
"ARG": ["C", "CA", "CB", "CG", "CD", "CZ", "N", "NE", "O", "NH1", "NH2"],
"ASP": ["C", "CA", "CB", "CG", "N", "O", "OD1", "OD2"],
"ASN": ["C", "CA", "CB", "CG", "N", "ND2", "O", "OD1"],
"CYS": ["C", "CA", "CB", "N", "O", "SG"],
"GLU": ["C", "CA", "CB", "CG", "CD", "N", "O", "OE1", "OE2"],
"GLN": ["C", "CA", "CB", "CG", "CD", "N", "NE2", "O", "OE1"],
"GLY": ["C", "CA", "N", "O"],
"HIS": ["C", "CA", "CB", "CG", "CD2", "CE1", "N", "ND1", "NE2", "O"],
"ILE": ["C", "CA", "CB", "CG1", "CG2", "CD1", "N", "O"],
"LEU": ["C", "CA", "CB", "CG", "CD1", "CD2", "N", "O"],
"LYS": ["C", "CA", "CB", "CG", "CD", "CE", "N", "NZ", "O"],
"MET": ["C", "CA", "CB", "CG", "CE", "N", "O", "SD"],
"PHE": ["C", "CA", "CB", "CG", "CD1", "CD2", "CE1", "CE2", "CZ", "N", "O"],
"PRO": ["C", "CA", "CB", "CG", "CD", "N", "O"],
"SER": ["C", "CA", "CB", "N", "O", "OG"],
"THR": ["C", "CA", "CB", "CG2", "N", "O", "OG1"],
"TRP": ["C", "CA", "CB", "CG", "CD1", "CD2", "CE2", "CE3", "CZ2", "CZ3", "CH2", "N", "NE1", "O"],
"TYR": ["C", "CA", "CB", "CG", "CD1", "CD2", "CE1", "CE2", "CZ", "N", "O", "OH"],
"VAL": ["C", "CA", "CB", "CG1", "CG2", "N", "O"],
}
# Naming swaps for ambiguous atom names.
# Due to symmetries in the amino acids the naming of atoms is ambiguous in
# 4 of the 20 amino acids.
# (The LDDT paper lists 7 amino acids as ambiguous, but the naming ambiguities
# in LEU, VAL and ARG can be resolved by using the 3d constellations of
# the 'ambiguous' atoms and their neighbours)
# TODO: ^ interpret this
residue_atom_renaming_swaps: Dict[str, Dict[str, str]] = {
"ASP": {"OD1": "OD2"},
"GLU": {"OE1": "OE2"},
"PHE": {"CD1": "CD2", "CE1": "CE2"},
"TYR": {"CD1": "CD2", "CE1": "CE2"},
}
# Van der Waals radii [Angstroem] of the atoms (from Wikipedia)
van_der_waals_radius: Dict[str, float] = {
"C": 1.7,
"N": 1.55,
"O": 1.52,
"S": 1.8,
}
Bond = collections.namedtuple("Bond", ["atom1_name", "atom2_name", "length", "stddev"])
BondAngle = collections.namedtuple(
"BondAngle",
["atom1_name", "atom2_name", "atom3name", "angle_rad", "stddev"],
)
def map_structure_with_atom_order(in_list: list, first_call: bool = True) -> list:
# Maps strings in a nested list structure to their corresponding index in atom_order
if first_call:
in_list = copy.deepcopy(in_list)
for i in range(len(in_list)):
if isinstance(in_list[i], list):
in_list[i] = map_structure_with_atom_order(in_list[i], first_call=False)
elif isinstance(in_list[i], str):
in_list[i] = atom_order[in_list[i]]
else:
raise ValueError("Unexpected type when mapping nested lists!")
return in_list
@functools.lru_cache(maxsize=None)
def load_stereo_chemical_props() -> (
Tuple[
Mapping[str, List[Bond]],
Mapping[str, List[Bond]],
Mapping[str, List[BondAngle]],
]
):
"""Load stereo_chemical_props.txt into a nice structure.
Load literature values for bond lengths and bond angles and translate bond angles into the length of the opposite
edge of the triangle ("residue_virtual_bonds").
Returns:
residue_bonds: dict that maps resname --> list of Bond tuples residue_virtual_bonds: dict that maps resname -->
list of Bond tuples residue_bond_angles: dict that maps resname --> list of BondAngle tuples
"""
# TODO: this file should be downloaded in a setup script
stereo_chemical_props = resources.read_text("openfold.resources", "stereo_chemical_props.txt")
lines_iter = iter(stereo_chemical_props.splitlines())
# Load bond lengths.
residue_bonds: Dict[str, List[Bond]] = {}
next(lines_iter) # Skip header line.
for line in lines_iter:
if line.strip() == "-":
break
bond, resname, bond_length, stddev = line.split()
atom1, atom2 = bond.split("-")
if resname not in residue_bonds:
residue_bonds[resname] = []
residue_bonds[resname].append(Bond(atom1, atom2, float(bond_length), float(stddev)))
residue_bonds["UNK"] = []
# Load bond angles.
residue_bond_angles: Dict[str, List[BondAngle]] = {}
next(lines_iter) # Skip empty line.
next(lines_iter) # Skip header line.
for line in lines_iter:
if line.strip() == "-":
break
bond, resname, angle_degree, stddev_degree = line.split()
atom1, atom2, atom3 = bond.split("-")
if resname not in residue_bond_angles:
residue_bond_angles[resname] = []
residue_bond_angles[resname].append(
BondAngle(
atom1,
atom2,
atom3,
float(angle_degree) / 180.0 * np.pi,
float(stddev_degree) / 180.0 * np.pi,
)
)
residue_bond_angles["UNK"] = []
def make_bond_key(atom1_name: str, atom2_name: str) -> str:
"""Unique key to lookup bonds."""
return "-".join(sorted([atom1_name, atom2_name]))
# Translate bond angles into distances ("virtual bonds").
residue_virtual_bonds: Dict[str, List[Bond]] = {}
for resname, bond_angles in residue_bond_angles.items():
# Create a fast lookup dict for bond lengths.
bond_cache: Dict[str, Bond] = {}
for b in residue_bonds[resname]:
bond_cache[make_bond_key(b.atom1_name, b.atom2_name)] = b
residue_virtual_bonds[resname] = []
for ba in bond_angles:
bond1 = bond_cache[make_bond_key(ba.atom1_name, ba.atom2_name)]
bond2 = bond_cache[make_bond_key(ba.atom2_name, ba.atom3name)]
# Compute distance between atom1 and atom3 using the law of cosines
# c^2 = a^2 + b^2 - 2ab*cos(gamma).
gamma = ba.angle_rad
length = np.sqrt(bond1.length**2 + bond2.length**2 - 2 * bond1.length * bond2.length * np.cos(gamma))
# Propagation of uncertainty assuming uncorrelated errors.
dl_outer = 0.5 / length
dl_dgamma = (2 * bond1.length * bond2.length * np.sin(gamma)) * dl_outer
dl_db1 = (2 * bond1.length - 2 * bond2.length * np.cos(gamma)) * dl_outer
dl_db2 = (2 * bond2.length - 2 * bond1.length * np.cos(gamma)) * dl_outer
stddev = np.sqrt(
(dl_dgamma * ba.stddev) ** 2 + (dl_db1 * bond1.stddev) ** 2 + (dl_db2 * bond2.stddev) ** 2
)
residue_virtual_bonds[resname].append(Bond(ba.atom1_name, ba.atom3name, length, stddev))
return (residue_bonds, residue_virtual_bonds, residue_bond_angles)
# Between-residue bond lengths for general bonds (first element) and for Proline
# (second element).
between_res_bond_length_c_n: Tuple[float, float] = (1.329, 1.341)
between_res_bond_length_stddev_c_n: Tuple[float, float] = (0.014, 0.016)
# Between-residue cos_angles.
between_res_cos_angles_c_n_ca: Tuple[float, float] = (-0.5203, 0.0353) # degrees: 121.352 +- 2.315
between_res_cos_angles_ca_c_n: Tuple[float, float] = (-0.4473, 0.0311) # degrees: 116.568 +- 1.995
# This mapping is used when we need to store atom data in a format that requires
# fixed atom data size for every residue (e.g. a numpy array).
atom_types: List[str] = [
"N",
"CA",
"C",
"CB",
"O",
"CG",
"CG1",
"CG2",
"OG",
"OG1",
"SG",
"CD",
"CD1",
"CD2",
"ND1",
"ND2",
"OD1",
"OD2",
"SD",
"CE",
"CE1",
"CE2",
"CE3",
"NE",
"NE1",
"NE2",
"OE1",
"OE2",
"CH2",
"NH1",
"NH2",
"OH",
"CZ",
"CZ2",
"CZ3",
"NZ",
"OXT",
]
atom_order: Dict[str, int] = {atom_type: i for i, atom_type in enumerate(atom_types)}
atom_type_num = len(atom_types) # := 37.
# A compact atom encoding with 14 columns
# pylint: disable=line-too-long
# pylint: disable=bad-whitespace
restype_name_to_atom14_names: Dict[str, List[str]] = {
"ALA": ["N", "CA", "C", "O", "CB", "", "", "", "", "", "", "", "", ""],
"ARG": ["N", "CA", "C", "O", "CB", "CG", "CD", "NE", "CZ", "NH1", "NH2", "", "", ""],
"ASN": ["N", "CA", "C", "O", "CB", "CG", "OD1", "ND2", "", "", "", "", "", ""],
"ASP": ["N", "CA", "C", "O", "CB", "CG", "OD1", "OD2", "", "", "", "", "", ""],
"CYS": ["N", "CA", "C", "O", "CB", "SG", "", "", "", "", "", "", "", ""],
"GLN": ["N", "CA", "C", "O", "CB", "CG", "CD", "OE1", "NE2", "", "", "", "", ""],
"GLU": ["N", "CA", "C", "O", "CB", "CG", "CD", "OE1", "OE2", "", "", "", "", ""],
"GLY": ["N", "CA", "C", "O", "", "", "", "", "", "", "", "", "", ""],
"HIS": ["N", "CA", "C", "O", "CB", "CG", "ND1", "CD2", "CE1", "NE2", "", "", "", ""],
"ILE": ["N", "CA", "C", "O", "CB", "CG1", "CG2", "CD1", "", "", "", "", "", ""],
"LEU": ["N", "CA", "C", "O", "CB", "CG", "CD1", "CD2", "", "", "", "", "", ""],
"LYS": ["N", "CA", "C", "O", "CB", "CG", "CD", "CE", "NZ", "", "", "", "", ""],
"MET": ["N", "CA", "C", "O", "CB", "CG", "SD", "CE", "", "", "", "", "", ""],
"PHE": ["N", "CA", "C", "O", "CB", "CG", "CD1", "CD2", "CE1", "CE2", "CZ", "", "", ""],
"PRO": ["N", "CA", "C", "O", "CB", "CG", "CD", "", "", "", "", "", "", ""],
"SER": ["N", "CA", "C", "O", "CB", "OG", "", "", "", "", "", "", "", ""],
"THR": ["N", "CA", "C", "O", "CB", "OG1", "CG2", "", "", "", "", "", "", ""],
"TRP": ["N", "CA", "C", "O", "CB", "CG", "CD1", "CD2", "NE1", "CE2", "CE3", "CZ2", "CZ3", "CH2"],
"TYR": ["N", "CA", "C", "O", "CB", "CG", "CD1", "CD2", "CE1", "CE2", "CZ", "OH", "", ""],
"VAL": ["N", "CA", "C", "O", "CB", "CG1", "CG2", "", "", "", "", "", "", ""],
"UNK": ["", "", "", "", "", "", "", "", "", "", "", "", "", ""],
}
# pylint: enable=line-too-long
# pylint: enable=bad-whitespace
# This is the standard residue order when coding AA type as a number.
# Reproduce it by taking 3-letter AA codes and sorting them alphabetically.
restypes: List[str] = [
"A",
"R",
"N",
"D",
"C",
"Q",
"E",
"G",
"H",
"I",
"L",
"K",
"M",
"F",
"P",
"S",
"T",
"W",
"Y",
"V",
]
restype_order: Dict[str, int] = {restype: i for i, restype in enumerate(restypes)}
restype_num = len(restypes) # := 20.
unk_restype_index = restype_num # Catch-all index for unknown restypes.
restypes_with_x: List[str] = restypes + ["X"]
restype_order_with_x: Dict[str, int] = {restype: i for i, restype in enumerate(restypes_with_x)}
def sequence_to_onehot(sequence: str, mapping: Mapping[str, int], map_unknown_to_x: bool = False) -> np.ndarray:
"""Maps the given sequence into a one-hot encoded matrix.
Args:
sequence: An amino acid sequence.
mapping: A dictionary mapping amino acids to integers.
map_unknown_to_x: If True, any amino acid that is not in the mapping will be
mapped to the unknown amino acid 'X'. If the mapping doesn't contain amino acid 'X', an error will be thrown.
If False, any amino acid not in the mapping will throw an error.
Returns:
A numpy array of shape (seq_len, num_unique_aas) with one-hot encoding of the sequence.
Raises:
ValueError: If the mapping doesn't contain values from 0 to
num_unique_aas - 1 without any gaps.
"""
num_entries = max(mapping.values()) + 1
if sorted(set(mapping.values())) != list(range(num_entries)):
raise ValueError(
"The mapping must have values from 0 to num_unique_aas-1 without any gaps. Got: %s"
% sorted(mapping.values())
)
one_hot_arr = np.zeros((len(sequence), num_entries), dtype=np.int32)
for aa_index, aa_type in enumerate(sequence):
if map_unknown_to_x:
if aa_type.isalpha() and aa_type.isupper():
aa_id = mapping.get(aa_type, mapping["X"])
else:
raise ValueError(f"Invalid character in the sequence: {aa_type}")
else:
aa_id = mapping[aa_type]
one_hot_arr[aa_index, aa_id] = 1
return one_hot_arr
restype_1to3: Dict[str, str] = {
"A": "ALA",
"R": "ARG",
"N": "ASN",
"D": "ASP",
"C": "CYS",
"Q": "GLN",
"E": "GLU",
"G": "GLY",
"H": "HIS",
"I": "ILE",
"L": "LEU",
"K": "LYS",
"M": "MET",
"F": "PHE",
"P": "PRO",
"S": "SER",
"T": "THR",
"W": "TRP",
"Y": "TYR",
"V": "VAL",
}
# NB: restype_3to1 differs from Bio.PDB.protein_letters_3to1 by being a simple
# 1-to-1 mapping of 3 letter names to one letter names. The latter contains
# many more, and less common, three letter names as keys and maps many of these
# to the same one letter name (including 'X' and 'U' which we don't use here).
restype_3to1: Dict[str, str] = {v: k for k, v in restype_1to3.items()}
# Define a restype name for all unknown residues.
unk_restype = "UNK"
resnames: List[str] = [restype_1to3[r] for r in restypes] + [unk_restype]
resname_to_idx: Dict[str, int] = {resname: i for i, resname in enumerate(resnames)}
# The mapping here uses hhblits convention, so that B is mapped to D, J and O
# are mapped to X, U is mapped to C, and Z is mapped to E. Other than that the
# remaining 20 amino acids are kept in alphabetical order.
# There are 2 non-amino acid codes, X (representing any amino acid) and
# "-" representing a missing amino acid in an alignment. The id for these
# codes is put at the end (20 and 21) so that they can easily be ignored if
# desired.
HHBLITS_AA_TO_ID: Dict[str, int] = {
"A": 0,
"B": 2,
"C": 1,
"D": 2,
"E": 3,
"F": 4,
"G": 5,
"H": 6,
"I": 7,
"J": 20,
"K": 8,
"L": 9,
"M": 10,
"N": 11,
"O": 20,
"P": 12,
"Q": 13,
"R": 14,
"S": 15,
"T": 16,
"U": 1,
"V": 17,
"W": 18,
"X": 20,
"Y": 19,
"Z": 3,
"-": 21,
}
# Partial inversion of HHBLITS_AA_TO_ID.
ID_TO_HHBLITS_AA: Dict[int, str] = {
0: "A",
1: "C", # Also U.
2: "D", # Also B.
3: "E", # Also Z.
4: "F",
5: "G",
6: "H",
7: "I",
8: "K",
9: "L",
10: "M",
11: "N",
12: "P",
13: "Q",
14: "R",
15: "S",
16: "T",
17: "V",
18: "W",
19: "Y",
20: "X", # Includes J and O.
21: "-",
}
restypes_with_x_and_gap: List[str] = restypes + ["X", "-"]
MAP_HHBLITS_AATYPE_TO_OUR_AATYPE: Tuple[int, ...] = tuple(
restypes_with_x_and_gap.index(ID_TO_HHBLITS_AA[i]) for i in range(len(restypes_with_x_and_gap))
)
def _make_standard_atom_mask() -> np.ndarray:
"""Returns [num_res_types, num_atom_types] mask array."""
# +1 to account for unknown (all 0s).
mask = np.zeros([restype_num + 1, atom_type_num], dtype=np.int32)
for restype, restype_letter in enumerate(restypes):
restype_name = restype_1to3[restype_letter]
atom_names = residue_atoms[restype_name]
for atom_name in atom_names:
atom_type = atom_order[atom_name]
mask[restype, atom_type] = 1
return mask
STANDARD_ATOM_MASK = _make_standard_atom_mask()
# A one hot representation for the first and second atoms defining the axis
# of rotation for each chi-angle in each residue.
def chi_angle_atom(atom_index: int) -> np.ndarray:
"""Define chi-angle rigid groups via one-hot representations."""
chi_angles_index = {}
one_hots = []
for k, v in chi_angles_atoms.items():
indices = [atom_types.index(s[atom_index]) for s in v]
indices.extend([-1] * (4 - len(indices)))
chi_angles_index[k] = indices
for r in restypes:
res3 = restype_1to3[r]
one_hot = np.eye(atom_type_num)[chi_angles_index[res3]]
one_hots.append(one_hot)
one_hots.append(np.zeros([4, atom_type_num])) # Add zeros for residue `X`.
one_hot = np.stack(one_hots, axis=0)
one_hot = np.transpose(one_hot, [0, 2, 1])
return one_hot
chi_atom_1_one_hot = chi_angle_atom(1)
chi_atom_2_one_hot = chi_angle_atom(2)
# An array like chi_angles_atoms but using indices rather than names.
chi_angles_atom_indices_list: List[List[List[str]]] = [chi_angles_atoms[restype_1to3[r]] for r in restypes]
chi_angles_atom_indices_ours: list = map_structure_with_atom_order(chi_angles_atom_indices_list)
chi_angles_atom_indices = np.array(
[chi_atoms + ([[0, 0, 0, 0]] * (4 - len(chi_atoms))) for chi_atoms in chi_angles_atom_indices_list]
)
# Mapping from (res_name, atom_name) pairs to the atom's chi group index
# and atom index within that group.
chi_groups_for_atom: Dict[Tuple[str, str], List[Tuple[int, int]]] = collections.defaultdict(list)
for res_name, chi_angle_atoms_for_res in chi_angles_atoms.items():
for chi_group_i, chi_group in enumerate(chi_angle_atoms_for_res):
for atom_i, atom in enumerate(chi_group):
chi_groups_for_atom[(res_name, atom)].append((chi_group_i, atom_i))
chi_groups_for_atom = dict(chi_groups_for_atom)
def _make_rigid_transformation_4x4(ex: np.ndarray, ey: np.ndarray, translation: np.ndarray) -> np.ndarray:
"""Create a rigid 4x4 transformation matrix from two axes and transl."""
# Normalize ex.
ex_normalized = ex / np.linalg.norm(ex)
# make ey perpendicular to ex
ey_normalized = ey - np.dot(ey, ex_normalized) * ex_normalized
ey_normalized /= np.linalg.norm(ey_normalized)
# compute ez as cross product
eznorm = np.cross(ex_normalized, ey_normalized)
m = np.stack([ex_normalized, ey_normalized, eznorm, translation]).transpose()
m = np.concatenate([m, [[0.0, 0.0, 0.0, 1.0]]], axis=0)
return m
# create an array with (restype, atomtype) --> rigid_group_idx
# and an array with (restype, atomtype, coord) for the atom positions
# and compute affine transformation matrices (4,4) from one rigid group to the
# previous group
restype_atom37_to_rigid_group = np.zeros([21, 37], dtype=int)
restype_atom37_mask = np.zeros([21, 37], dtype=np.float32)
restype_atom37_rigid_group_positions = np.zeros([21, 37, 3], dtype=np.float32)
restype_atom14_to_rigid_group = np.zeros([21, 14], dtype=int)
restype_atom14_mask = np.zeros([21, 14], dtype=np.float32)
restype_atom14_rigid_group_positions = np.zeros([21, 14, 3], dtype=np.float32)
restype_rigid_group_default_frame = np.zeros([21, 8, 4, 4], dtype=np.float32)
def _make_rigid_group_constants() -> None:
"""Fill the arrays above."""
for restype, restype_letter in enumerate(restypes):
resname = restype_1to3[restype_letter]
for atomname, group_idx, atom_position in rigid_group_atom_positions[resname]:
atomtype = atom_order[atomname]
restype_atom37_to_rigid_group[restype, atomtype] = group_idx
restype_atom37_mask[restype, atomtype] = 1
restype_atom37_rigid_group_positions[restype, atomtype, :] = atom_position
atom14idx = restype_name_to_atom14_names[resname].index(atomname)
restype_atom14_to_rigid_group[restype, atom14idx] = group_idx
restype_atom14_mask[restype, atom14idx] = 1
restype_atom14_rigid_group_positions[restype, atom14idx, :] = atom_position
for restype, restype_letter in enumerate(restypes):
resname = restype_1to3[restype_letter]
atom_positions: Dict[str, np.ndarray] = {
name: np.array(pos) for name, _, pos in rigid_group_atom_positions[resname]
}
# backbone to backbone is the identity transform
restype_rigid_group_default_frame[restype, 0, :, :] = np.eye(4)
# pre-omega-frame to backbone (currently dummy identity matrix)
restype_rigid_group_default_frame[restype, 1, :, :] = np.eye(4)
# phi-frame to backbone
mat = _make_rigid_transformation_4x4(
ex=atom_positions["N"] - atom_positions["CA"],
ey=np.array([1.0, 0.0, 0.0]),
translation=atom_positions["N"],
)
restype_rigid_group_default_frame[restype, 2, :, :] = mat
# psi-frame to backbone
mat = _make_rigid_transformation_4x4(
ex=atom_positions["C"] - atom_positions["CA"],
ey=atom_positions["CA"] - atom_positions["N"],
translation=atom_positions["C"],
)
restype_rigid_group_default_frame[restype, 3, :, :] = mat
# chi1-frame to backbone
if chi_angles_mask[restype][0]:
base_atom_names = chi_angles_atoms[resname][0]
base_atom_positions = [atom_positions[name] for name in base_atom_names]
mat = _make_rigid_transformation_4x4(
ex=base_atom_positions[2] - base_atom_positions[1],
ey=base_atom_positions[0] - base_atom_positions[1],
translation=base_atom_positions[2],
)
restype_rigid_group_default_frame[restype, 4, :, :] = mat
# chi2-frame to chi1-frame
# chi3-frame to chi2-frame
# chi4-frame to chi3-frame
# luckily all rotation axes for the next frame start at (0,0,0) of the
# previous frame
for chi_idx in range(1, 4):
if chi_angles_mask[restype][chi_idx]:
axis_end_atom_name = chi_angles_atoms[resname][chi_idx][2]
axis_end_atom_position = atom_positions[axis_end_atom_name]
mat = _make_rigid_transformation_4x4(
ex=axis_end_atom_position,
ey=np.array([-1.0, 0.0, 0.0]),
translation=axis_end_atom_position,
)
restype_rigid_group_default_frame[restype, 4 + chi_idx, :, :] = mat
_make_rigid_group_constants()
def make_atom14_dists_bounds(
overlap_tolerance: float = 1.5,
bond_length_tolerance_factor: int = 15,
) -> Dict[str, np.ndarray]:
"""compute upper and lower bounds for bonds to assess violations."""
restype_atom14_bond_lower_bound = np.zeros([21, 14, 14], np.float32)
restype_atom14_bond_upper_bound = np.zeros([21, 14, 14], np.float32)
restype_atom14_bond_stddev = np.zeros([21, 14, 14], np.float32)
residue_bonds, residue_virtual_bonds, _ = load_stereo_chemical_props()
for restype, restype_letter in enumerate(restypes):
resname = restype_1to3[restype_letter]
atom_list = restype_name_to_atom14_names[resname]
# create lower and upper bounds for clashes
for atom1_idx, atom1_name in enumerate(atom_list):
if not atom1_name:
continue
atom1_radius = van_der_waals_radius[atom1_name[0]]
for atom2_idx, atom2_name in enumerate(atom_list):
if (not atom2_name) or atom1_idx == atom2_idx:
continue
atom2_radius = van_der_waals_radius[atom2_name[0]]
lower = atom1_radius + atom2_radius - overlap_tolerance
upper = 1e10
restype_atom14_bond_lower_bound[restype, atom1_idx, atom2_idx] = lower
restype_atom14_bond_lower_bound[restype, atom2_idx, atom1_idx] = lower
restype_atom14_bond_upper_bound[restype, atom1_idx, atom2_idx] = upper
restype_atom14_bond_upper_bound[restype, atom2_idx, atom1_idx] = upper
# overwrite lower and upper bounds for bonds and angles
for b in residue_bonds[resname] + residue_virtual_bonds[resname]:
atom1_idx = atom_list.index(b.atom1_name)
atom2_idx = atom_list.index(b.atom2_name)
lower = b.length - bond_length_tolerance_factor * b.stddev
upper = b.length + bond_length_tolerance_factor * b.stddev
restype_atom14_bond_lower_bound[restype, atom1_idx, atom2_idx] = lower
restype_atom14_bond_lower_bound[restype, atom2_idx, atom1_idx] = lower
restype_atom14_bond_upper_bound[restype, atom1_idx, atom2_idx] = upper
restype_atom14_bond_upper_bound[restype, atom2_idx, atom1_idx] = upper
restype_atom14_bond_stddev[restype, atom1_idx, atom2_idx] = b.stddev
restype_atom14_bond_stddev[restype, atom2_idx, atom1_idx] = b.stddev
return {
"lower_bound": restype_atom14_bond_lower_bound, # shape (21,14,14)
"upper_bound": restype_atom14_bond_upper_bound, # shape (21,14,14)
"stddev": restype_atom14_bond_stddev, # shape (21,14,14)
}
restype_atom14_ambiguous_atoms = np.zeros((21, 14), dtype=np.float32)
restype_atom14_ambiguous_atoms_swap_idx: np.ndarray = np.tile(np.arange(14, dtype=int), (21, 1))
def _make_atom14_ambiguity_feats() -> None:
for res, pairs in residue_atom_renaming_swaps.items():
res_idx = restype_order[restype_3to1[res]]
for atom1, atom2 in pairs.items():
atom1_idx = restype_name_to_atom14_names[res].index(atom1)
atom2_idx = restype_name_to_atom14_names[res].index(atom2)
restype_atom14_ambiguous_atoms[res_idx, atom1_idx] = 1
restype_atom14_ambiguous_atoms[res_idx, atom2_idx] = 1
restype_atom14_ambiguous_atoms_swap_idx[res_idx, atom1_idx] = atom2_idx
restype_atom14_ambiguous_atoms_swap_idx[res_idx, atom2_idx] = atom1_idx
_make_atom14_ambiguity_feats()
def aatype_to_str_sequence(aatype: Sequence[int]) -> str:
return "".join([restypes_with_x[aatype[i]] for i in range(len(aatype))])
| 0 |
hf_public_repos/transformers/src/transformers/models/esm | hf_public_repos/transformers/src/transformers/models/esm/openfold_utils/protein.py | # Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Protein data type."""
import dataclasses
import re
import string
from typing import Any, Dict, Iterator, List, Mapping, Optional, Sequence, Tuple
import numpy as np
from . import residue_constants
FeatureDict = Mapping[str, np.ndarray]
ModelOutput = Mapping[str, Any] # Is a nested dict.
PICO_TO_ANGSTROM = 0.01
@dataclasses.dataclass(frozen=True)
class Protein:
"""Protein structure representation."""
# Cartesian coordinates of atoms in angstroms. The atom types correspond to
# residue_constants.atom_types, i.e. the first three are N, CA, CB.
atom_positions: np.ndarray # [num_res, num_atom_type, 3]
# Amino-acid type for each residue represented as an integer between 0 and
# 20, where 20 is 'X'.
aatype: np.ndarray # [num_res]
# Binary float mask to indicate presence of a particular atom. 1.0 if an atom
# is present and 0.0 if not. This should be used for loss masking.
atom_mask: np.ndarray # [num_res, num_atom_type]
# Residue index as used in PDB. It is not necessarily continuous or 0-indexed.
residue_index: np.ndarray # [num_res]
# B-factors, or temperature factors, of each residue (in sq. angstroms units),
# representing the displacement of the residue from its ground truth mean
# value.
b_factors: np.ndarray # [num_res, num_atom_type]
# Chain indices for multi-chain predictions
chain_index: Optional[np.ndarray] = None
# Optional remark about the protein. Included as a comment in output PDB
# files
remark: Optional[str] = None
# Templates used to generate this protein (prediction-only)
parents: Optional[Sequence[str]] = None
# Chain corresponding to each parent
parents_chain_index: Optional[Sequence[int]] = None
def from_proteinnet_string(proteinnet_str: str) -> Protein:
tag_re = r"(\[[A-Z]+\]\n)"
tags: List[str] = [tag.strip() for tag in re.split(tag_re, proteinnet_str) if len(tag) > 0]
groups: Iterator[Tuple[str, List[str]]] = zip(tags[0::2], [l.split("\n") for l in tags[1::2]])
atoms: List[str] = ["N", "CA", "C"]
aatype = None
atom_positions = None
atom_mask = None
for g in groups:
if "[PRIMARY]" == g[0]:
seq = g[1][0].strip()
for i in range(len(seq)):
if seq[i] not in residue_constants.restypes:
seq[i] = "X" # FIXME: strings are immutable
aatype = np.array(
[residue_constants.restype_order.get(res_symbol, residue_constants.restype_num) for res_symbol in seq]
)
elif "[TERTIARY]" == g[0]:
tertiary: List[List[float]] = []
for axis in range(3):
tertiary.append(list(map(float, g[1][axis].split())))
tertiary_np = np.array(tertiary)
atom_positions = np.zeros((len(tertiary[0]) // 3, residue_constants.atom_type_num, 3)).astype(np.float32)
for i, atom in enumerate(atoms):
atom_positions[:, residue_constants.atom_order[atom], :] = np.transpose(tertiary_np[:, i::3])
atom_positions *= PICO_TO_ANGSTROM
elif "[MASK]" == g[0]:
mask = np.array(list(map({"-": 0, "+": 1}.get, g[1][0].strip())))
atom_mask = np.zeros(
(
len(mask),
residue_constants.atom_type_num,
)
).astype(np.float32)
for i, atom in enumerate(atoms):
atom_mask[:, residue_constants.atom_order[atom]] = 1
atom_mask *= mask[..., None]
assert aatype is not None
return Protein(
atom_positions=atom_positions,
atom_mask=atom_mask,
aatype=aatype,
residue_index=np.arange(len(aatype)),
b_factors=None,
)
def get_pdb_headers(prot: Protein, chain_id: int = 0) -> List[str]:
pdb_headers: List[str] = []
remark = prot.remark
if remark is not None:
pdb_headers.append(f"REMARK {remark}")
parents = prot.parents
parents_chain_index = prot.parents_chain_index
if parents is not None and parents_chain_index is not None:
parents = [p for i, p in zip(parents_chain_index, parents) if i == chain_id]
if parents is None or len(parents) == 0:
parents = ["N/A"]
pdb_headers.append(f"PARENT {' '.join(parents)}")
return pdb_headers
def add_pdb_headers(prot: Protein, pdb_str: str) -> str:
"""Add pdb headers to an existing PDB string. Useful during multi-chain
recycling
"""
out_pdb_lines: List[str] = []
lines = pdb_str.split("\n")
remark = prot.remark
if remark is not None:
out_pdb_lines.append(f"REMARK {remark}")
parents_per_chain: List[List[str]]
if prot.parents is not None and len(prot.parents) > 0:
parents_per_chain = []
if prot.parents_chain_index is not None:
parent_dict: Dict[str, List[str]] = {}
for p, i in zip(prot.parents, prot.parents_chain_index):
parent_dict.setdefault(str(i), [])
parent_dict[str(i)].append(p)
max_idx = max([int(chain_idx) for chain_idx in parent_dict])
for i in range(max_idx + 1):
chain_parents = parent_dict.get(str(i), ["N/A"])
parents_per_chain.append(chain_parents)
else:
parents_per_chain.append(list(prot.parents))
else:
parents_per_chain = [["N/A"]]
def make_parent_line(p: Sequence[str]) -> str:
return f"PARENT {' '.join(p)}"
out_pdb_lines.append(make_parent_line(parents_per_chain[0]))
chain_counter = 0
for i, l in enumerate(lines):
if "PARENT" not in l and "REMARK" not in l:
out_pdb_lines.append(l)
if "TER" in l and "END" not in lines[i + 1]:
chain_counter += 1
if not chain_counter >= len(parents_per_chain):
chain_parents = parents_per_chain[chain_counter]
else:
chain_parents = ["N/A"]
out_pdb_lines.append(make_parent_line(chain_parents))
return "\n".join(out_pdb_lines)
def to_pdb(prot: Protein) -> str:
"""Converts a `Protein` instance to a PDB string.
Args:
prot: The protein to convert to PDB.
Returns:
PDB string.
"""
restypes = residue_constants.restypes + ["X"]
def res_1to3(r: int) -> str:
return residue_constants.restype_1to3.get(restypes[r], "UNK")
atom_types = residue_constants.atom_types
pdb_lines: List[str] = []
atom_mask = prot.atom_mask
aatype = prot.aatype
atom_positions = prot.atom_positions
residue_index = prot.residue_index.astype(np.int32)
b_factors = prot.b_factors
chain_index = prot.chain_index
if np.any(aatype > residue_constants.restype_num):
raise ValueError("Invalid aatypes.")
headers = get_pdb_headers(prot)
if len(headers) > 0:
pdb_lines.extend(headers)
n = aatype.shape[0]
atom_index = 1
prev_chain_index = 0
chain_tags = string.ascii_uppercase
chain_tag = None
# Add all atom sites.
for i in range(n):
res_name_3 = res_1to3(aatype[i])
for atom_name, pos, mask, b_factor in zip(atom_types, atom_positions[i], atom_mask[i], b_factors[i]):
if mask < 0.5:
continue
record_type = "ATOM"
name = atom_name if len(atom_name) == 4 else f" {atom_name}"
alt_loc = ""
insertion_code = ""
occupancy = 1.00
element = atom_name[0] # Protein supports only C, N, O, S, this works.
charge = ""
chain_tag = "A"
if chain_index is not None:
chain_tag = chain_tags[chain_index[i]]
# PDB is a columnar format, every space matters here!
atom_line = (
f"{record_type:<6}{atom_index:>5} {name:<4}{alt_loc:>1}"
f"{res_name_3:>3} {chain_tag:>1}"
f"{residue_index[i]:>4}{insertion_code:>1} "
f"{pos[0]:>8.3f}{pos[1]:>8.3f}{pos[2]:>8.3f}"
f"{occupancy:>6.2f}{b_factor:>6.2f} "
f"{element:>2}{charge:>2}"
)
pdb_lines.append(atom_line)
atom_index += 1
should_terminate = i == n - 1
if chain_index is not None:
if i != n - 1 and chain_index[i + 1] != prev_chain_index:
should_terminate = True
prev_chain_index = chain_index[i + 1]
if should_terminate:
# Close the chain.
chain_end = "TER"
chain_termination_line = (
f"{chain_end:<6}{atom_index:>5} {res_1to3(aatype[i]):>3} {chain_tag:>1}{residue_index[i]:>4}"
)
pdb_lines.append(chain_termination_line)
atom_index += 1
if i != n - 1:
# "prev" is a misnomer here. This happens at the beginning of
# each new chain.
pdb_lines.extend(get_pdb_headers(prot, prev_chain_index))
pdb_lines.append("END")
pdb_lines.append("")
return "\n".join(pdb_lines)
def ideal_atom_mask(prot: Protein) -> np.ndarray:
"""Computes an ideal atom mask.
`Protein.atom_mask` typically is defined according to the atoms that are reported in the PDB. This function
computes a mask according to heavy atoms that should be present in the given sequence of amino acids.
Args:
prot: `Protein` whose fields are `numpy.ndarray` objects.
Returns:
An ideal atom mask.
"""
return residue_constants.STANDARD_ATOM_MASK[prot.aatype]
def from_prediction(
features: FeatureDict,
result: ModelOutput,
b_factors: Optional[np.ndarray] = None,
chain_index: Optional[np.ndarray] = None,
remark: Optional[str] = None,
parents: Optional[Sequence[str]] = None,
parents_chain_index: Optional[Sequence[int]] = None,
) -> Protein:
"""Assembles a protein from a prediction.
Args:
features: Dictionary holding model inputs.
result: Dictionary holding model outputs.
b_factors: (Optional) B-factors to use for the protein.
chain_index: (Optional) Chain indices for multi-chain predictions
remark: (Optional) Remark about the prediction
parents: (Optional) List of template names
Returns:
A protein instance.
"""
return Protein(
aatype=features["aatype"],
atom_positions=result["final_atom_positions"],
atom_mask=result["final_atom_mask"],
residue_index=features["residue_index"] + 1,
b_factors=b_factors if b_factors is not None else np.zeros_like(result["final_atom_mask"]),
chain_index=chain_index,
remark=remark,
parents=parents,
parents_chain_index=parents_chain_index,
)
| 0 |
hf_public_repos/transformers/src/transformers/models/esm | hf_public_repos/transformers/src/transformers/models/esm/openfold_utils/chunk_utils.py | # Copyright 2021 AlQuraishi Laboratory
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import logging
import math
from functools import partial
from typing import Any, Callable, Dict, Iterable, List, Optional, Sequence, Tuple, Union
import torch
from .tensor_utils import tensor_tree_map, tree_map
def _fetch_dims(tree: Union[dict, list, tuple, torch.Tensor]) -> List[Tuple[int, ...]]:
shapes = []
if isinstance(tree, dict):
for v in tree.values():
shapes.extend(_fetch_dims(v))
elif isinstance(tree, (list, tuple)):
for t in tree:
shapes.extend(_fetch_dims(t))
elif isinstance(tree, torch.Tensor):
shapes.append(tree.shape)
else:
raise ValueError("Not supported")
return shapes
@torch.jit.ignore
def _flat_idx_to_idx(flat_idx: int, dims: Tuple[int, ...]) -> Tuple[int, ...]:
idx = []
for d in reversed(dims):
idx.append(flat_idx % d)
flat_idx = flat_idx // d
return tuple(reversed(idx))
@torch.jit.ignore
def _get_minimal_slice_set(
start: Sequence[int],
end: Sequence[int],
dims: Sequence[int],
start_edges: Optional[Sequence[bool]] = None,
end_edges: Optional[Sequence[bool]] = None,
) -> List[Tuple[slice, ...]]:
"""
Produces an ordered sequence of tensor slices that, when used in sequence on a tensor with shape dims, yields
tensors that contain every leaf in the contiguous range [start, end]. Care is taken to yield a short sequence of
slices, and perhaps even the shortest possible (I'm pretty sure it's the latter).
end is INCLUSIVE.
"""
# start_edges and end_edges both indicate whether, starting from any given
# dimension, the start/end index is at the top/bottom edge of the
# corresponding tensor, modeled as a tree
def reduce_edge_list(l: List[bool]) -> None:
tally = True
for i in range(len(l)):
reversed_idx = -1 * (i + 1)
l[reversed_idx] &= tally
tally = l[reversed_idx]
if start_edges is None:
start_edges = [s == 0 for s in start]
reduce_edge_list(start_edges)
if end_edges is None:
end_edges = [e == (d - 1) for e, d in zip(end, dims)]
reduce_edge_list(end_edges)
# Base cases. Either start/end are empty and we're done, or the final,
# one-dimensional tensor can be simply sliced
if len(start) == 0:
return [()]
elif len(start) == 1:
return [(slice(start[0], end[0] + 1),)]
slices: List[Tuple[slice, ...]] = []
path_list: List[slice] = []
# Dimensions common to start and end can be selected directly
for s, e in zip(start, end):
if s == e:
path_list.append(slice(s, s + 1))
else:
break
path: Tuple[slice, ...] = tuple(path_list)
divergence_idx = len(path)
# start == end, and we're done
if divergence_idx == len(dims):
return [path]
def upper() -> Tuple[Tuple[slice, ...], ...]:
assert start_edges is not None
assert end_edges is not None
sdi = start[divergence_idx]
return tuple(
path + (slice(sdi, sdi + 1),) + s
for s in _get_minimal_slice_set(
start[divergence_idx + 1 :],
[d - 1 for d in dims[divergence_idx + 1 :]],
dims[divergence_idx + 1 :],
start_edges=start_edges[divergence_idx + 1 :],
end_edges=[True for _ in end_edges[divergence_idx + 1 :]],
)
)
def lower() -> Tuple[Tuple[slice, ...], ...]:
assert start_edges is not None
assert end_edges is not None
edi = end[divergence_idx]
return tuple(
path + (slice(edi, edi + 1),) + s
for s in _get_minimal_slice_set(
[0 for _ in start[divergence_idx + 1 :]],
end[divergence_idx + 1 :],
dims[divergence_idx + 1 :],
start_edges=[True for _ in start_edges[divergence_idx + 1 :]],
end_edges=end_edges[divergence_idx + 1 :],
)
)
# If both start and end are at the edges of the subtree rooted at
# divergence_idx, we can just select the whole subtree at once
if start_edges[divergence_idx] and end_edges[divergence_idx]:
slices.append(path + (slice(start[divergence_idx], end[divergence_idx] + 1),))
# If just start is at the edge, we can grab almost all of the subtree,
# treating only the ragged bottom edge as an edge case
elif start_edges[divergence_idx]:
slices.append(path + (slice(start[divergence_idx], end[divergence_idx]),))
slices.extend(lower())
# Analogous to the previous case, but the top is ragged this time
elif end_edges[divergence_idx]:
slices.extend(upper())
slices.append(path + (slice(start[divergence_idx] + 1, end[divergence_idx] + 1),))
# If both sides of the range are ragged, we need to handle both sides
# separately. If there's contiguous meat in between them, we can index it
# in one big chunk
else:
slices.extend(upper())
middle_ground = end[divergence_idx] - start[divergence_idx]
if middle_ground > 1:
slices.append(path + (slice(start[divergence_idx] + 1, end[divergence_idx]),))
slices.extend(lower())
return slices
@torch.jit.ignore
def _chunk_slice(t: torch.Tensor, flat_start: int, flat_end: int, no_batch_dims: int) -> torch.Tensor:
"""
Equivalent to
t.reshape((-1,) + t.shape[no_batch_dims:])[flat_start:flat_end]
but without the need for the initial reshape call, which can be memory-intensive in certain situations. The only
reshape operations in this function are performed on sub-tensors that scale with (flat_end - flat_start), the chunk
size.
"""
batch_dims = t.shape[:no_batch_dims]
start_idx = list(_flat_idx_to_idx(flat_start, batch_dims))
# _get_minimal_slice_set is inclusive
end_idx = list(_flat_idx_to_idx(flat_end - 1, batch_dims))
# Get an ordered list of slices to perform
slices = _get_minimal_slice_set(
start_idx,
end_idx,
batch_dims,
)
sliced_tensors = [t[s] for s in slices]
return torch.cat([s.view((-1,) + t.shape[no_batch_dims:]) for s in sliced_tensors])
def chunk_layer(
layer: Callable,
inputs: Dict[str, Any],
chunk_size: int,
no_batch_dims: int,
low_mem: bool = False,
_out: Any = None,
_add_into_out: bool = False,
) -> Any:
"""
Implements the "chunking" procedure described in section 1.11.8.
Layer outputs and inputs are assumed to be simple "pytrees," consisting only of (arbitrarily nested) lists, tuples,
and dicts with torch.Tensor leaves.
Args:
layer:
The layer to be applied chunk-wise
inputs:
A (non-nested) dictionary of keyworded inputs. All leaves must be tensors and must share the same batch
dimensions.
chunk_size:
The number of sub-batches per chunk. If multiple batch dimensions are specified, a "sub-batch" is defined
as a single indexing of all batch dimensions simultaneously (s.t. the number of sub-batches is the product
of the batch dimensions).
no_batch_dims:
How many of the initial dimensions of each input tensor can be considered batch dimensions.
low_mem:
Avoids flattening potentially large input tensors. Unnecessary in most cases, and is ever so slightly
slower than the default setting.
Returns:
The reassembled output of the layer on the inputs.
"""
if not (len(inputs) > 0):
raise ValueError("Must provide at least one input")
initial_dims = [shape[:no_batch_dims] for shape in _fetch_dims(inputs)]
orig_batch_dims = tuple([max(s) for s in zip(*initial_dims)])
def _prep_inputs(t: torch.Tensor) -> torch.Tensor:
if not low_mem:
if not sum(t.shape[:no_batch_dims]) == no_batch_dims:
t = t.expand(orig_batch_dims + t.shape[no_batch_dims:])
t = t.reshape(-1, *t.shape[no_batch_dims:])
else:
t = t.expand(orig_batch_dims + t.shape[no_batch_dims:])
return t
prepped_inputs: Dict[str, Any] = tensor_tree_map(_prep_inputs, inputs)
prepped_outputs = None
if _out is not None:
prepped_outputs = tensor_tree_map(lambda t: t.view([-1] + list(t.shape[no_batch_dims:])), _out)
flat_batch_dim = 1
for d in orig_batch_dims:
flat_batch_dim *= d
no_chunks = flat_batch_dim // chunk_size + (flat_batch_dim % chunk_size != 0)
def _select_chunk(t: torch.Tensor) -> torch.Tensor:
return t[i : i + chunk_size] if t.shape[0] != 1 else t
i = 0
out = prepped_outputs
for _ in range(no_chunks):
# Chunk the input
if not low_mem:
select_chunk = _select_chunk
else:
select_chunk = partial(
_chunk_slice,
flat_start=i,
flat_end=min(flat_batch_dim, i + chunk_size),
no_batch_dims=len(orig_batch_dims),
)
chunks: Dict[str, Any] = tensor_tree_map(select_chunk, prepped_inputs)
# Run the layer on the chunk
output_chunk = layer(**chunks)
# Allocate space for the output
if out is None:
out = tensor_tree_map(lambda t: t.new_zeros((flat_batch_dim,) + t.shape[1:]), output_chunk)
# Put the chunk in its pre-allocated space
if isinstance(output_chunk, dict):
def assign(d1: dict, d2: dict) -> None:
for k, v in d1.items():
if isinstance(v, dict):
assign(v, d2[k])
else:
if _add_into_out:
v[i : i + chunk_size] += d2[k]
else:
v[i : i + chunk_size] = d2[k]
assign(out, output_chunk)
elif isinstance(output_chunk, tuple):
for x1, x2 in zip(out, output_chunk):
if _add_into_out:
x1[i : i + chunk_size] += x2
else:
x1[i : i + chunk_size] = x2
elif isinstance(output_chunk, torch.Tensor):
if _add_into_out:
out[i : i + chunk_size] += output_chunk
else:
out[i : i + chunk_size] = output_chunk
else:
raise ValueError("Not supported")
i += chunk_size
out = tensor_tree_map(lambda t: t.view(orig_batch_dims + t.shape[1:]), out)
return out
class ChunkSizeTuner:
def __init__(
self,
# Heuristically, runtimes for most of the modules in the network
# plateau earlier than this on all GPUs I've run the model on.
max_chunk_size: int = 512,
):
self.max_chunk_size = max_chunk_size
self.cached_chunk_size: Optional[int] = None
self.cached_arg_data: Optional[tuple] = None
def _determine_favorable_chunk_size(self, fn: Callable, args: tuple, min_chunk_size: int) -> int:
logging.info("Tuning chunk size...")
if min_chunk_size >= self.max_chunk_size:
return min_chunk_size
candidates: List[int] = [2**l for l in range(int(math.log(self.max_chunk_size, 2)) + 1)]
candidates = [c for c in candidates if c > min_chunk_size]
candidates = [min_chunk_size] + candidates
candidates[-1] += 4
def test_chunk_size(chunk_size: int) -> bool:
try:
with torch.no_grad():
fn(*args, chunk_size=chunk_size)
return True
except RuntimeError:
return False
min_viable_chunk_size_index = 0
i = len(candidates) - 1
while i > min_viable_chunk_size_index:
viable = test_chunk_size(candidates[i])
if not viable:
i = (min_viable_chunk_size_index + i) // 2
else:
min_viable_chunk_size_index = i
i = (i + len(candidates) - 1) // 2
return candidates[min_viable_chunk_size_index]
def _compare_arg_caches(self, ac1: Iterable, ac2: Iterable) -> bool:
consistent = True
for a1, a2 in zip(ac1, ac2):
assert type(ac1) == type(ac2)
if isinstance(ac1, (list, tuple)):
consistent &= self._compare_arg_caches(a1, a2)
elif isinstance(ac1, dict):
a1_items = [v for _, v in sorted(a1.items(), key=lambda x: x[0])]
a2_items = [v for _, v in sorted(a2.items(), key=lambda x: x[0])]
consistent &= self._compare_arg_caches(a1_items, a2_items)
else:
consistent &= a1 == a2
return consistent
def tune_chunk_size(
self,
representative_fn: Callable,
args: tuple,
min_chunk_size: int,
) -> int:
consistent = True
arg_data: tuple = tree_map(lambda a: a.shape if isinstance(a, torch.Tensor) else a, args, object)
if self.cached_arg_data is not None:
# If args have changed shape/value, we need to re-tune
assert len(self.cached_arg_data) == len(arg_data)
consistent = self._compare_arg_caches(self.cached_arg_data, arg_data)
else:
# Otherwise, we can reuse the precomputed value
consistent = False
if not consistent:
self.cached_chunk_size = self._determine_favorable_chunk_size(
representative_fn,
args,
min_chunk_size,
)
self.cached_arg_data = arg_data
assert self.cached_chunk_size is not None
return self.cached_chunk_size
| 0 |
hf_public_repos/transformers/src/transformers/models/esm | hf_public_repos/transformers/src/transformers/models/esm/openfold_utils/feats.py | # Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Dict, Tuple, overload
import torch
import torch.types
from torch import nn
from . import residue_constants as rc
from .rigid_utils import Rigid, Rotation
from .tensor_utils import batched_gather
@overload
def pseudo_beta_fn(aatype: torch.Tensor, all_atom_positions: torch.Tensor, all_atom_masks: None) -> torch.Tensor:
...
@overload
def pseudo_beta_fn(
aatype: torch.Tensor, all_atom_positions: torch.Tensor, all_atom_masks: torch.Tensor
) -> Tuple[torch.Tensor, torch.Tensor]:
...
def pseudo_beta_fn(aatype, all_atom_positions, all_atom_masks):
is_gly = aatype == rc.restype_order["G"]
ca_idx = rc.atom_order["CA"]
cb_idx = rc.atom_order["CB"]
pseudo_beta = torch.where(
is_gly[..., None].expand(*((-1,) * len(is_gly.shape)), 3),
all_atom_positions[..., ca_idx, :],
all_atom_positions[..., cb_idx, :],
)
if all_atom_masks is not None:
pseudo_beta_mask = torch.where(
is_gly,
all_atom_masks[..., ca_idx],
all_atom_masks[..., cb_idx],
)
return pseudo_beta, pseudo_beta_mask
else:
return pseudo_beta
def atom14_to_atom37(atom14: torch.Tensor, batch: Dict[str, torch.Tensor]) -> torch.Tensor:
atom37_data = batched_gather(
atom14,
batch["residx_atom37_to_atom14"],
dim=-2,
no_batch_dims=len(atom14.shape[:-2]),
)
atom37_data = atom37_data * batch["atom37_atom_exists"][..., None]
return atom37_data
def build_template_angle_feat(template_feats: Dict[str, torch.Tensor]) -> torch.Tensor:
template_aatype = template_feats["template_aatype"]
torsion_angles_sin_cos = template_feats["template_torsion_angles_sin_cos"]
alt_torsion_angles_sin_cos = template_feats["template_alt_torsion_angles_sin_cos"]
torsion_angles_mask = template_feats["template_torsion_angles_mask"]
template_angle_feat = torch.cat(
[
nn.functional.one_hot(template_aatype, 22),
torsion_angles_sin_cos.reshape(*torsion_angles_sin_cos.shape[:-2], 14),
alt_torsion_angles_sin_cos.reshape(*alt_torsion_angles_sin_cos.shape[:-2], 14),
torsion_angles_mask,
],
dim=-1,
)
return template_angle_feat
def build_template_pair_feat(
batch: Dict[str, torch.Tensor],
min_bin: torch.types.Number,
max_bin: torch.types.Number,
no_bins: int,
use_unit_vector: bool = False,
eps: float = 1e-20,
inf: float = 1e8,
) -> torch.Tensor:
template_mask = batch["template_pseudo_beta_mask"]
template_mask_2d = template_mask[..., None] * template_mask[..., None, :]
# Compute distogram (this seems to differ slightly from Alg. 5)
tpb = batch["template_pseudo_beta"]
dgram = torch.sum((tpb[..., None, :] - tpb[..., None, :, :]) ** 2, dim=-1, keepdim=True)
lower = torch.linspace(min_bin, max_bin, no_bins, device=tpb.device) ** 2
upper = torch.cat([lower[1:], lower.new_tensor([inf])], dim=-1)
dgram = ((dgram > lower) * (dgram < upper)).type(dgram.dtype)
to_concat = [dgram, template_mask_2d[..., None]]
aatype_one_hot: torch.LongTensor = nn.functional.one_hot(
batch["template_aatype"],
rc.restype_num + 2,
)
n_res = batch["template_aatype"].shape[-1]
to_concat.append(aatype_one_hot[..., None, :, :].expand(*aatype_one_hot.shape[:-2], n_res, -1, -1))
to_concat.append(aatype_one_hot[..., None, :].expand(*aatype_one_hot.shape[:-2], -1, n_res, -1))
n, ca, c = [rc.atom_order[a] for a in ["N", "CA", "C"]]
rigids = Rigid.make_transform_from_reference(
n_xyz=batch["template_all_atom_positions"][..., n, :],
ca_xyz=batch["template_all_atom_positions"][..., ca, :],
c_xyz=batch["template_all_atom_positions"][..., c, :],
eps=eps,
)
points = rigids.get_trans()[..., None, :, :]
rigid_vec = rigids[..., None].invert_apply(points)
inv_distance_scalar = torch.rsqrt(eps + torch.sum(rigid_vec**2, dim=-1))
t_aa_masks = batch["template_all_atom_mask"]
template_mask = t_aa_masks[..., n] * t_aa_masks[..., ca] * t_aa_masks[..., c]
template_mask_2d = template_mask[..., None] * template_mask[..., None, :]
inv_distance_scalar = inv_distance_scalar * template_mask_2d
unit_vector = rigid_vec * inv_distance_scalar[..., None]
if not use_unit_vector:
unit_vector = unit_vector * 0.0
to_concat.extend(torch.unbind(unit_vector[..., None, :], dim=-1))
to_concat.append(template_mask_2d[..., None])
act = torch.cat(to_concat, dim=-1)
act = act * template_mask_2d[..., None]
return act
def build_extra_msa_feat(batch: Dict[str, torch.Tensor]) -> torch.Tensor:
msa_1hot: torch.LongTensor = nn.functional.one_hot(batch["extra_msa"], 23)
msa_feat = [
msa_1hot,
batch["extra_has_deletion"].unsqueeze(-1),
batch["extra_deletion_value"].unsqueeze(-1),
]
return torch.cat(msa_feat, dim=-1)
def torsion_angles_to_frames(
r: Rigid,
alpha: torch.Tensor,
aatype: torch.Tensor,
rrgdf: torch.Tensor,
) -> Rigid:
# [*, N, 8, 4, 4]
default_4x4 = rrgdf[aatype, ...]
# [*, N, 8] transformations, i.e.
# One [*, N, 8, 3, 3] rotation matrix and
# One [*, N, 8, 3] translation matrix
default_r = r.from_tensor_4x4(default_4x4)
bb_rot = alpha.new_zeros((*((1,) * len(alpha.shape[:-1])), 2))
bb_rot[..., 1] = 1
# [*, N, 8, 2]
alpha = torch.cat([bb_rot.expand(*alpha.shape[:-2], -1, -1), alpha], dim=-2)
# [*, N, 8, 3, 3]
# Produces rotation matrices of the form:
# [
# [1, 0 , 0 ],
# [0, a_2,-a_1],
# [0, a_1, a_2]
# ]
# This follows the original code rather than the supplement, which uses
# different indices.
all_rots = alpha.new_zeros(default_r.get_rots().get_rot_mats().shape)
all_rots[..., 0, 0] = 1
all_rots[..., 1, 1] = alpha[..., 1]
all_rots[..., 1, 2] = -alpha[..., 0]
all_rots[..., 2, 1:] = alpha
all_frames = default_r.compose(Rigid(Rotation(rot_mats=all_rots), None))
chi2_frame_to_frame = all_frames[..., 5]
chi3_frame_to_frame = all_frames[..., 6]
chi4_frame_to_frame = all_frames[..., 7]
chi1_frame_to_bb = all_frames[..., 4]
chi2_frame_to_bb = chi1_frame_to_bb.compose(chi2_frame_to_frame)
chi3_frame_to_bb = chi2_frame_to_bb.compose(chi3_frame_to_frame)
chi4_frame_to_bb = chi3_frame_to_bb.compose(chi4_frame_to_frame)
all_frames_to_bb = Rigid.cat(
[
all_frames[..., :5],
chi2_frame_to_bb.unsqueeze(-1),
chi3_frame_to_bb.unsqueeze(-1),
chi4_frame_to_bb.unsqueeze(-1),
],
dim=-1,
)
all_frames_to_global = r[..., None].compose(all_frames_to_bb)
return all_frames_to_global
def frames_and_literature_positions_to_atom14_pos(
r: Rigid,
aatype: torch.Tensor,
default_frames: torch.Tensor,
group_idx: torch.Tensor,
atom_mask: torch.Tensor,
lit_positions: torch.Tensor,
) -> torch.Tensor:
# [*, N, 14]
group_mask = group_idx[aatype, ...]
# [*, N, 14, 8]
group_mask_one_hot: torch.LongTensor = nn.functional.one_hot(
group_mask,
num_classes=default_frames.shape[-3],
)
# [*, N, 14, 8]
t_atoms_to_global = r[..., None, :] * group_mask_one_hot
# [*, N, 14]
t_atoms_to_global = t_atoms_to_global.map_tensor_fn(lambda x: torch.sum(x, dim=-1))
# [*, N, 14, 1]
atom_mask = atom_mask[aatype, ...].unsqueeze(-1)
# [*, N, 14, 3]
lit_positions = lit_positions[aatype, ...]
pred_positions = t_atoms_to_global.apply(lit_positions)
pred_positions = pred_positions * atom_mask
return pred_positions
| 0 |
hf_public_repos/transformers/src/transformers/models/esm | hf_public_repos/transformers/src/transformers/models/esm/openfold_utils/loss.py | # Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Dict, Optional, Tuple
import torch
def _calculate_bin_centers(boundaries: torch.Tensor) -> torch.Tensor:
step = boundaries[1] - boundaries[0]
bin_centers = boundaries + step / 2
bin_centers = torch.cat([bin_centers, (bin_centers[-1] + step).unsqueeze(-1)], dim=0)
return bin_centers
def _calculate_expected_aligned_error(
alignment_confidence_breaks: torch.Tensor,
aligned_distance_error_probs: torch.Tensor,
) -> Tuple[torch.Tensor, torch.Tensor]:
bin_centers = _calculate_bin_centers(alignment_confidence_breaks)
return (
torch.sum(aligned_distance_error_probs * bin_centers, dim=-1),
bin_centers[-1],
)
def compute_predicted_aligned_error(
logits: torch.Tensor,
max_bin: int = 31,
no_bins: int = 64,
**kwargs,
) -> Dict[str, torch.Tensor]:
"""Computes aligned confidence metrics from logits.
Args:
logits: [*, num_res, num_res, num_bins] the logits output from
PredictedAlignedErrorHead.
max_bin: Maximum bin value
no_bins: Number of bins
Returns:
aligned_confidence_probs: [*, num_res, num_res, num_bins] the predicted
aligned error probabilities over bins for each residue pair.
predicted_aligned_error: [*, num_res, num_res] the expected aligned distance
error for each pair of residues.
max_predicted_aligned_error: [*] the maximum predicted error possible.
"""
boundaries = torch.linspace(0, max_bin, steps=(no_bins - 1), device=logits.device)
aligned_confidence_probs = torch.nn.functional.softmax(logits, dim=-1)
predicted_aligned_error, max_predicted_aligned_error = _calculate_expected_aligned_error(
alignment_confidence_breaks=boundaries,
aligned_distance_error_probs=aligned_confidence_probs,
)
return {
"aligned_confidence_probs": aligned_confidence_probs,
"predicted_aligned_error": predicted_aligned_error,
"max_predicted_aligned_error": max_predicted_aligned_error,
}
def compute_tm(
logits: torch.Tensor,
residue_weights: Optional[torch.Tensor] = None,
max_bin: int = 31,
no_bins: int = 64,
eps: float = 1e-8,
**kwargs,
) -> torch.Tensor:
if residue_weights is None:
residue_weights = logits.new_ones(logits.shape[-2])
boundaries = torch.linspace(0, max_bin, steps=(no_bins - 1), device=logits.device)
bin_centers = _calculate_bin_centers(boundaries)
torch.sum(residue_weights)
n = logits.shape[-2]
clipped_n = max(n, 19)
d0 = 1.24 * (clipped_n - 15) ** (1.0 / 3) - 1.8
probs = torch.nn.functional.softmax(logits, dim=-1)
tm_per_bin = 1.0 / (1 + (bin_centers**2) / (d0**2))
predicted_tm_term = torch.sum(probs * tm_per_bin, dim=-1)
normed_residue_mask = residue_weights / (eps + residue_weights.sum())
per_alignment = torch.sum(predicted_tm_term * normed_residue_mask, dim=-1)
weighted = per_alignment * residue_weights
argmax = (weighted == torch.max(weighted)).nonzero()[0]
return per_alignment[tuple(argmax)]
| 0 |
hf_public_repos/transformers/src/transformers/models/esm | hf_public_repos/transformers/src/transformers/models/esm/openfold_utils/data_transforms.py | # Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Dict
import numpy as np
import torch
from . import residue_constants as rc
from .tensor_utils import tensor_tree_map, tree_map
def make_atom14_masks(protein: Dict[str, torch.Tensor]) -> Dict[str, torch.Tensor]:
"""Construct denser atom positions (14 dimensions instead of 37)."""
restype_atom14_to_atom37_list = []
restype_atom37_to_atom14_list = []
restype_atom14_mask_list = []
for rt in rc.restypes:
atom_names = rc.restype_name_to_atom14_names[rc.restype_1to3[rt]]
restype_atom14_to_atom37_list.append([(rc.atom_order[name] if name else 0) for name in atom_names])
atom_name_to_idx14 = {name: i for i, name in enumerate(atom_names)}
restype_atom37_to_atom14_list.append(
[(atom_name_to_idx14[name] if name in atom_name_to_idx14 else 0) for name in rc.atom_types]
)
restype_atom14_mask_list.append([(1.0 if name else 0.0) for name in atom_names])
# Add dummy mapping for restype 'UNK'
restype_atom14_to_atom37_list.append([0] * 14)
restype_atom37_to_atom14_list.append([0] * 37)
restype_atom14_mask_list.append([0.0] * 14)
restype_atom14_to_atom37 = torch.tensor(
restype_atom14_to_atom37_list,
dtype=torch.int32,
device=protein["aatype"].device,
)
restype_atom37_to_atom14 = torch.tensor(
restype_atom37_to_atom14_list,
dtype=torch.int32,
device=protein["aatype"].device,
)
restype_atom14_mask = torch.tensor(
restype_atom14_mask_list,
dtype=torch.float32,
device=protein["aatype"].device,
)
protein_aatype = protein["aatype"].to(torch.long)
# create the mapping for (residx, atom14) --> atom37, i.e. an array
# with shape (num_res, 14) containing the atom37 indices for this protein
residx_atom14_to_atom37 = restype_atom14_to_atom37[protein_aatype]
residx_atom14_mask = restype_atom14_mask[protein_aatype]
protein["atom14_atom_exists"] = residx_atom14_mask
protein["residx_atom14_to_atom37"] = residx_atom14_to_atom37.long()
# create the gather indices for mapping back
residx_atom37_to_atom14 = restype_atom37_to_atom14[protein_aatype]
protein["residx_atom37_to_atom14"] = residx_atom37_to_atom14.long()
# create the corresponding mask
restype_atom37_mask = torch.zeros([21, 37], dtype=torch.float32, device=protein["aatype"].device)
for restype, restype_letter in enumerate(rc.restypes):
restype_name = rc.restype_1to3[restype_letter]
atom_names = rc.residue_atoms[restype_name]
for atom_name in atom_names:
atom_type = rc.atom_order[atom_name]
restype_atom37_mask[restype, atom_type] = 1
residx_atom37_mask = restype_atom37_mask[protein_aatype]
protein["atom37_atom_exists"] = residx_atom37_mask
return protein
def make_atom14_masks_np(batch: Dict[str, torch.Tensor]) -> Dict[str, np.ndarray]:
batch = tree_map(lambda n: torch.tensor(n, device=batch["aatype"].device), batch, np.ndarray)
out = tensor_tree_map(lambda t: np.array(t), make_atom14_masks(batch))
return out
| 0 |
hf_public_repos/transformers/src/transformers/models/esm | hf_public_repos/transformers/src/transformers/models/esm/openfold_utils/tensor_utils.py | # Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from functools import partial
from typing import Any, Callable, Dict, List, Type, TypeVar, Union, overload
import torch
import torch.nn as nn
import torch.types
def add(m1: torch.Tensor, m2: torch.Tensor, inplace: bool) -> torch.Tensor:
# The first operation in a checkpoint can't be in-place, but it's
# nice to have in-place addition during inference. Thus...
if not inplace:
m1 = m1 + m2
else:
m1 += m2
return m1
def permute_final_dims(tensor: torch.Tensor, inds: List[int]) -> torch.Tensor:
zero_index = -1 * len(inds)
first_inds = list(range(len(tensor.shape[:zero_index])))
return tensor.permute(first_inds + [zero_index + i for i in inds])
def flatten_final_dims(t: torch.Tensor, no_dims: int) -> torch.Tensor:
return t.reshape(t.shape[:-no_dims] + (-1,))
def masked_mean(mask: torch.Tensor, value: torch.Tensor, dim: int, eps: float = 1e-4) -> torch.Tensor:
mask = mask.expand(*value.shape)
return torch.sum(mask * value, dim=dim) / (eps + torch.sum(mask, dim=dim))
def pts_to_distogram(
pts: torch.Tensor, min_bin: torch.types.Number = 2.3125, max_bin: torch.types.Number = 21.6875, no_bins: int = 64
) -> torch.Tensor:
boundaries = torch.linspace(min_bin, max_bin, no_bins - 1, device=pts.device)
dists = torch.sqrt(torch.sum((pts.unsqueeze(-2) - pts.unsqueeze(-3)) ** 2, dim=-1))
return torch.bucketize(dists, boundaries)
def dict_multimap(fn: Callable[[list], Any], dicts: List[dict]) -> dict:
first = dicts[0]
new_dict = {}
for k, v in first.items():
all_v = [d[k] for d in dicts]
if isinstance(v, dict):
new_dict[k] = dict_multimap(fn, all_v)
else:
new_dict[k] = fn(all_v)
return new_dict
def one_hot(x: torch.Tensor, v_bins: torch.Tensor) -> torch.Tensor:
reshaped_bins = v_bins.view(((1,) * len(x.shape)) + (len(v_bins),))
diffs = x[..., None] - reshaped_bins
am = torch.argmin(torch.abs(diffs), dim=-1)
return nn.functional.one_hot(am, num_classes=len(v_bins)).float()
def batched_gather(data: torch.Tensor, inds: torch.Tensor, dim: int = 0, no_batch_dims: int = 0) -> torch.Tensor:
ranges: List[Union[slice, torch.Tensor]] = []
for i, s in enumerate(data.shape[:no_batch_dims]):
r = torch.arange(s)
r = r.view(*(*((1,) * i), -1, *((1,) * (len(inds.shape) - i - 1))))
ranges.append(r)
remaining_dims: List[Union[slice, torch.Tensor]] = [slice(None) for _ in range(len(data.shape) - no_batch_dims)]
remaining_dims[dim - no_batch_dims if dim >= 0 else dim] = inds
ranges.extend(remaining_dims)
# Matt note: Editing this to get around the behaviour of using a list as an array index changing
# in recent Numpy versions
return data[tuple(ranges)]
T = TypeVar("T")
# With tree_map, a poor man's JAX tree_map
def dict_map(
fn: Callable[[T], Any], dic: Dict[Any, Union[dict, list, tuple, T]], leaf_type: Type[T]
) -> Dict[Any, Union[dict, list, tuple, Any]]:
new_dict: Dict[Any, Union[dict, list, tuple, Any]] = {}
for k, v in dic.items():
if isinstance(v, dict):
new_dict[k] = dict_map(fn, v, leaf_type)
else:
new_dict[k] = tree_map(fn, v, leaf_type)
return new_dict
@overload
def tree_map(fn: Callable[[T], Any], tree: T, leaf_type: Type[T]) -> Any:
...
@overload
def tree_map(fn: Callable[[T], Any], tree: dict, leaf_type: Type[T]) -> dict:
...
@overload
def tree_map(fn: Callable[[T], Any], tree: list, leaf_type: Type[T]) -> list:
...
@overload
def tree_map(fn: Callable[[T], Any], tree: tuple, leaf_type: Type[T]) -> tuple:
...
def tree_map(fn, tree, leaf_type):
if isinstance(tree, dict):
return dict_map(fn, tree, leaf_type)
elif isinstance(tree, list):
return [tree_map(fn, x, leaf_type) for x in tree]
elif isinstance(tree, tuple):
return tuple(tree_map(fn, x, leaf_type) for x in tree)
elif isinstance(tree, leaf_type):
return fn(tree)
else:
print(type(tree))
raise ValueError("Not supported")
tensor_tree_map = partial(tree_map, leaf_type=torch.Tensor)
| 0 |
hf_public_repos/transformers/src/transformers/models/esm | hf_public_repos/transformers/src/transformers/models/esm/openfold_utils/__init__.py | from .chunk_utils import chunk_layer
from .data_transforms import make_atom14_masks
from .feats import atom14_to_atom37, frames_and_literature_positions_to_atom14_pos, torsion_angles_to_frames
from .loss import compute_predicted_aligned_error, compute_tm
from .protein import Protein as OFProtein
from .protein import to_pdb
from .rigid_utils import Rigid, Rotation
from .tensor_utils import dict_multimap, flatten_final_dims, permute_final_dims
| 0 |
hf_public_repos/transformers/src/transformers/models/esm | hf_public_repos/transformers/src/transformers/models/esm/openfold_utils/rigid_utils.py | # Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from __future__ import annotations
from functools import lru_cache
from typing import Any, Callable, Dict, List, Optional, Sequence, Tuple
import numpy as np
import torch
def rot_matmul(a: torch.Tensor, b: torch.Tensor) -> torch.Tensor:
"""
Performs matrix multiplication of two rotation matrix tensors. Written out by hand to avoid AMP downcasting.
Args:
a: [*, 3, 3] left multiplicand
b: [*, 3, 3] right multiplicand
Returns:
The product ab
"""
def row_mul(i: int) -> torch.Tensor:
return torch.stack(
[
a[..., i, 0] * b[..., 0, 0] + a[..., i, 1] * b[..., 1, 0] + a[..., i, 2] * b[..., 2, 0],
a[..., i, 0] * b[..., 0, 1] + a[..., i, 1] * b[..., 1, 1] + a[..., i, 2] * b[..., 2, 1],
a[..., i, 0] * b[..., 0, 2] + a[..., i, 1] * b[..., 1, 2] + a[..., i, 2] * b[..., 2, 2],
],
dim=-1,
)
return torch.stack(
[
row_mul(0),
row_mul(1),
row_mul(2),
],
dim=-2,
)
def rot_vec_mul(r: torch.Tensor, t: torch.Tensor) -> torch.Tensor:
"""
Applies a rotation to a vector. Written out by hand to avoid transfer to avoid AMP downcasting.
Args:
r: [*, 3, 3] rotation matrices
t: [*, 3] coordinate tensors
Returns:
[*, 3] rotated coordinates
"""
x, y, z = torch.unbind(t, dim=-1)
return torch.stack(
[
r[..., 0, 0] * x + r[..., 0, 1] * y + r[..., 0, 2] * z,
r[..., 1, 0] * x + r[..., 1, 1] * y + r[..., 1, 2] * z,
r[..., 2, 0] * x + r[..., 2, 1] * y + r[..., 2, 2] * z,
],
dim=-1,
)
@lru_cache(maxsize=None)
def identity_rot_mats(
batch_dims: Tuple[int, ...],
dtype: Optional[torch.dtype] = None,
device: Optional[torch.device] = None,
requires_grad: bool = True,
) -> torch.Tensor:
rots = torch.eye(3, dtype=dtype, device=device, requires_grad=requires_grad)
rots = rots.view(*((1,) * len(batch_dims)), 3, 3)
rots = rots.expand(*batch_dims, -1, -1)
rots = rots.contiguous()
return rots
@lru_cache(maxsize=None)
def identity_trans(
batch_dims: Tuple[int, ...],
dtype: Optional[torch.dtype] = None,
device: Optional[torch.device] = None,
requires_grad: bool = True,
) -> torch.Tensor:
trans = torch.zeros((*batch_dims, 3), dtype=dtype, device=device, requires_grad=requires_grad)
return trans
@lru_cache(maxsize=None)
def identity_quats(
batch_dims: Tuple[int, ...],
dtype: Optional[torch.dtype] = None,
device: Optional[torch.device] = None,
requires_grad: bool = True,
) -> torch.Tensor:
quat = torch.zeros((*batch_dims, 4), dtype=dtype, device=device, requires_grad=requires_grad)
with torch.no_grad():
quat[..., 0] = 1
return quat
_quat_elements: List[str] = ["a", "b", "c", "d"]
_qtr_keys: List[str] = [l1 + l2 for l1 in _quat_elements for l2 in _quat_elements]
_qtr_ind_dict: Dict[str, int] = {key: ind for ind, key in enumerate(_qtr_keys)}
def _to_mat(pairs: List[Tuple[str, int]]) -> np.ndarray:
mat = np.zeros((4, 4))
for key, value in pairs:
ind = _qtr_ind_dict[key]
mat[ind // 4][ind % 4] = value
return mat
_QTR_MAT = np.zeros((4, 4, 3, 3))
_QTR_MAT[..., 0, 0] = _to_mat([("aa", 1), ("bb", 1), ("cc", -1), ("dd", -1)])
_QTR_MAT[..., 0, 1] = _to_mat([("bc", 2), ("ad", -2)])
_QTR_MAT[..., 0, 2] = _to_mat([("bd", 2), ("ac", 2)])
_QTR_MAT[..., 1, 0] = _to_mat([("bc", 2), ("ad", 2)])
_QTR_MAT[..., 1, 1] = _to_mat([("aa", 1), ("bb", -1), ("cc", 1), ("dd", -1)])
_QTR_MAT[..., 1, 2] = _to_mat([("cd", 2), ("ab", -2)])
_QTR_MAT[..., 2, 0] = _to_mat([("bd", 2), ("ac", -2)])
_QTR_MAT[..., 2, 1] = _to_mat([("cd", 2), ("ab", 2)])
_QTR_MAT[..., 2, 2] = _to_mat([("aa", 1), ("bb", -1), ("cc", -1), ("dd", 1)])
def quat_to_rot(quat: torch.Tensor) -> torch.Tensor:
"""
Converts a quaternion to a rotation matrix.
Args:
quat: [*, 4] quaternions
Returns:
[*, 3, 3] rotation matrices
"""
# [*, 4, 4]
quat = quat[..., None] * quat[..., None, :]
# [4, 4, 3, 3]
mat = _get_quat("_QTR_MAT", dtype=quat.dtype, device=quat.device)
# [*, 4, 4, 3, 3]
shaped_qtr_mat = mat.view((1,) * len(quat.shape[:-2]) + mat.shape)
quat = quat[..., None, None] * shaped_qtr_mat
# [*, 3, 3]
return torch.sum(quat, dim=(-3, -4))
def rot_to_quat(rot: torch.Tensor) -> torch.Tensor:
if rot.shape[-2:] != (3, 3):
raise ValueError("Input rotation is incorrectly shaped")
[[xx, xy, xz], [yx, yy, yz], [zx, zy, zz]] = [[rot[..., i, j] for j in range(3)] for i in range(3)]
k = [
[
xx + yy + zz,
zy - yz,
xz - zx,
yx - xy,
],
[
zy - yz,
xx - yy - zz,
xy + yx,
xz + zx,
],
[
xz - zx,
xy + yx,
yy - xx - zz,
yz + zy,
],
[
yx - xy,
xz + zx,
yz + zy,
zz - xx - yy,
],
]
_, vectors = torch.linalg.eigh((1.0 / 3.0) * torch.stack([torch.stack(t, dim=-1) for t in k], dim=-2))
return vectors[..., -1]
_QUAT_MULTIPLY = np.zeros((4, 4, 4))
_QUAT_MULTIPLY[:, :, 0] = [[1, 0, 0, 0], [0, -1, 0, 0], [0, 0, -1, 0], [0, 0, 0, -1]]
_QUAT_MULTIPLY[:, :, 1] = [[0, 1, 0, 0], [1, 0, 0, 0], [0, 0, 0, 1], [0, 0, -1, 0]]
_QUAT_MULTIPLY[:, :, 2] = [[0, 0, 1, 0], [0, 0, 0, -1], [1, 0, 0, 0], [0, 1, 0, 0]]
_QUAT_MULTIPLY[:, :, 3] = [[0, 0, 0, 1], [0, 0, 1, 0], [0, -1, 0, 0], [1, 0, 0, 0]]
_QUAT_MULTIPLY_BY_VEC = _QUAT_MULTIPLY[:, 1:, :]
_CACHED_QUATS: Dict[str, np.ndarray] = {
"_QTR_MAT": _QTR_MAT,
"_QUAT_MULTIPLY": _QUAT_MULTIPLY,
"_QUAT_MULTIPLY_BY_VEC": _QUAT_MULTIPLY_BY_VEC,
}
@lru_cache(maxsize=None)
def _get_quat(quat_key: str, dtype: torch.dtype, device: torch.device) -> torch.Tensor:
return torch.tensor(_CACHED_QUATS[quat_key], dtype=dtype, device=device)
def quat_multiply(quat1: torch.Tensor, quat2: torch.Tensor) -> torch.Tensor:
"""Multiply a quaternion by another quaternion."""
mat = _get_quat("_QUAT_MULTIPLY", dtype=quat1.dtype, device=quat1.device)
reshaped_mat = mat.view((1,) * len(quat1.shape[:-1]) + mat.shape)
return torch.sum(reshaped_mat * quat1[..., :, None, None] * quat2[..., None, :, None], dim=(-3, -2))
def quat_multiply_by_vec(quat: torch.Tensor, vec: torch.Tensor) -> torch.Tensor:
"""Multiply a quaternion by a pure-vector quaternion."""
mat = _get_quat("_QUAT_MULTIPLY_BY_VEC", dtype=quat.dtype, device=quat.device)
reshaped_mat = mat.view((1,) * len(quat.shape[:-1]) + mat.shape)
return torch.sum(reshaped_mat * quat[..., :, None, None] * vec[..., None, :, None], dim=(-3, -2))
def invert_rot_mat(rot_mat: torch.Tensor) -> torch.Tensor:
return rot_mat.transpose(-1, -2)
def invert_quat(quat: torch.Tensor) -> torch.Tensor:
quat_prime = quat.clone()
quat_prime[..., 1:] *= -1
inv = quat_prime / torch.sum(quat**2, dim=-1, keepdim=True)
return inv
class Rotation:
"""
A 3D rotation. Depending on how the object is initialized, the rotation is represented by either a rotation matrix
or a quaternion, though both formats are made available by helper functions. To simplify gradient computation, the
underlying format of the rotation cannot be changed in-place. Like Rigid, the class is designed to mimic the
behavior of a torch Tensor, almost as if each Rotation object were a tensor of rotations, in one format or another.
"""
def __init__(
self,
rot_mats: Optional[torch.Tensor] = None,
quats: Optional[torch.Tensor] = None,
normalize_quats: bool = True,
):
"""
Args:
rot_mats:
A [*, 3, 3] rotation matrix tensor. Mutually exclusive with quats
quats:
A [*, 4] quaternion. Mutually exclusive with rot_mats. If normalize_quats is not True, must be a unit
quaternion
normalize_quats:
If quats is specified, whether to normalize quats
"""
if (rot_mats is None and quats is None) or (rot_mats is not None and quats is not None):
raise ValueError("Exactly one input argument must be specified")
if (rot_mats is not None and rot_mats.shape[-2:] != (3, 3)) or (quats is not None and quats.shape[-1] != 4):
raise ValueError("Incorrectly shaped rotation matrix or quaternion")
# Force full-precision
if quats is not None:
quats = quats.to(dtype=torch.float32)
if rot_mats is not None:
rot_mats = rot_mats.to(dtype=torch.float32)
if quats is not None and normalize_quats:
quats = quats / torch.linalg.norm(quats, dim=-1, keepdim=True)
self._rot_mats = rot_mats
self._quats = quats
@staticmethod
def identity(
shape,
dtype: Optional[torch.dtype] = None,
device: Optional[torch.device] = None,
requires_grad: bool = True,
fmt: str = "quat",
) -> Rotation:
"""
Returns an identity Rotation.
Args:
shape:
The "shape" of the resulting Rotation object. See documentation for the shape property
dtype:
The torch dtype for the rotation
device:
The torch device for the new rotation
requires_grad:
Whether the underlying tensors in the new rotation object should require gradient computation
fmt:
One of "quat" or "rot_mat". Determines the underlying format of the new object's rotation
Returns:
A new identity rotation
"""
if fmt == "rot_mat":
rot_mats = identity_rot_mats(
shape,
dtype,
device,
requires_grad,
)
return Rotation(rot_mats=rot_mats, quats=None)
elif fmt == "quat":
quats = identity_quats(shape, dtype, device, requires_grad)
return Rotation(rot_mats=None, quats=quats, normalize_quats=False)
else:
raise ValueError(f"Invalid format: f{fmt}")
# Magic methods
def __getitem__(self, index: Any) -> Rotation:
"""
Allows torch-style indexing over the virtual shape of the rotation object. See documentation for the shape
property.
Args:
index:
A torch index. E.g. (1, 3, 2), or (slice(None,))
Returns:
The indexed rotation
"""
if type(index) != tuple:
index = (index,)
if self._rot_mats is not None:
rot_mats = self._rot_mats[index + (slice(None), slice(None))]
return Rotation(rot_mats=rot_mats)
elif self._quats is not None:
quats = self._quats[index + (slice(None),)]
return Rotation(quats=quats, normalize_quats=False)
else:
raise ValueError("Both rotations are None")
def __mul__(self, right: torch.Tensor) -> Rotation:
"""
Pointwise left multiplication of the rotation with a tensor. Can be used to e.g. mask the Rotation.
Args:
right:
The tensor multiplicand
Returns:
The product
"""
if not (isinstance(right, torch.Tensor)):
raise TypeError("The other multiplicand must be a Tensor")
if self._rot_mats is not None:
rot_mats = self._rot_mats * right[..., None, None]
return Rotation(rot_mats=rot_mats, quats=None)
elif self._quats is not None:
quats = self._quats * right[..., None]
return Rotation(rot_mats=None, quats=quats, normalize_quats=False)
else:
raise ValueError("Both rotations are None")
def __rmul__(self, left: torch.Tensor) -> Rotation:
"""
Reverse pointwise multiplication of the rotation with a tensor.
Args:
left:
The left multiplicand
Returns:
The product
"""
return self.__mul__(left)
# Properties
@property
def shape(self) -> torch.Size:
"""
Returns the virtual shape of the rotation object. This shape is defined as the batch dimensions of the
underlying rotation matrix or quaternion. If the Rotation was initialized with a [10, 3, 3] rotation matrix
tensor, for example, the resulting shape would be [10].
Returns:
The virtual shape of the rotation object
"""
if self._rot_mats is not None:
return self._rot_mats.shape[:-2]
elif self._quats is not None:
return self._quats.shape[:-1]
else:
raise ValueError("Both rotations are None")
@property
def dtype(self) -> torch.dtype:
"""
Returns the dtype of the underlying rotation.
Returns:
The dtype of the underlying rotation
"""
if self._rot_mats is not None:
return self._rot_mats.dtype
elif self._quats is not None:
return self._quats.dtype
else:
raise ValueError("Both rotations are None")
@property
def device(self) -> torch.device:
"""
The device of the underlying rotation
Returns:
The device of the underlying rotation
"""
if self._rot_mats is not None:
return self._rot_mats.device
elif self._quats is not None:
return self._quats.device
else:
raise ValueError("Both rotations are None")
@property
def requires_grad(self) -> bool:
"""
Returns the requires_grad property of the underlying rotation
Returns:
The requires_grad property of the underlying tensor
"""
if self._rot_mats is not None:
return self._rot_mats.requires_grad
elif self._quats is not None:
return self._quats.requires_grad
else:
raise ValueError("Both rotations are None")
def get_rot_mats(self) -> torch.Tensor:
"""
Returns the underlying rotation as a rotation matrix tensor.
Returns:
The rotation as a rotation matrix tensor
"""
if self._rot_mats is not None:
return self._rot_mats
elif self._quats is not None:
return quat_to_rot(self._quats)
else:
raise ValueError("Both rotations are None")
def get_quats(self) -> torch.Tensor:
"""
Returns the underlying rotation as a quaternion tensor.
Depending on whether the Rotation was initialized with a quaternion, this function may call torch.linalg.eigh.
Returns:
The rotation as a quaternion tensor.
"""
if self._rot_mats is not None:
return rot_to_quat(self._rot_mats)
elif self._quats is not None:
return self._quats
else:
raise ValueError("Both rotations are None")
def get_cur_rot(self) -> torch.Tensor:
"""
Return the underlying rotation in its current form
Returns:
The stored rotation
"""
if self._rot_mats is not None:
return self._rot_mats
elif self._quats is not None:
return self._quats
else:
raise ValueError("Both rotations are None")
# Rotation functions
def compose_q_update_vec(self, q_update_vec: torch.Tensor, normalize_quats: bool = True) -> Rotation:
"""
Returns a new quaternion Rotation after updating the current object's underlying rotation with a quaternion
update, formatted as a [*, 3] tensor whose final three columns represent x, y, z such that (1, x, y, z) is the
desired (not necessarily unit) quaternion update.
Args:
q_update_vec:
A [*, 3] quaternion update tensor
normalize_quats:
Whether to normalize the output quaternion
Returns:
An updated Rotation
"""
quats = self.get_quats()
new_quats = quats + quat_multiply_by_vec(quats, q_update_vec)
return Rotation(
rot_mats=None,
quats=new_quats,
normalize_quats=normalize_quats,
)
def compose_r(self, r: Rotation) -> Rotation:
"""
Compose the rotation matrices of the current Rotation object with those of another.
Args:
r:
An update rotation object
Returns:
An updated rotation object
"""
r1 = self.get_rot_mats()
r2 = r.get_rot_mats()
new_rot_mats = rot_matmul(r1, r2)
return Rotation(rot_mats=new_rot_mats, quats=None)
def compose_q(self, r: Rotation, normalize_quats: bool = True) -> Rotation:
"""
Compose the quaternions of the current Rotation object with those of another.
Depending on whether either Rotation was initialized with quaternions, this function may call
torch.linalg.eigh.
Args:
r:
An update rotation object
Returns:
An updated rotation object
"""
q1 = self.get_quats()
q2 = r.get_quats()
new_quats = quat_multiply(q1, q2)
return Rotation(rot_mats=None, quats=new_quats, normalize_quats=normalize_quats)
def apply(self, pts: torch.Tensor) -> torch.Tensor:
"""
Apply the current Rotation as a rotation matrix to a set of 3D coordinates.
Args:
pts:
A [*, 3] set of points
Returns:
[*, 3] rotated points
"""
rot_mats = self.get_rot_mats()
return rot_vec_mul(rot_mats, pts)
def invert_apply(self, pts: torch.Tensor) -> torch.Tensor:
"""
The inverse of the apply() method.
Args:
pts:
A [*, 3] set of points
Returns:
[*, 3] inverse-rotated points
"""
rot_mats = self.get_rot_mats()
inv_rot_mats = invert_rot_mat(rot_mats)
return rot_vec_mul(inv_rot_mats, pts)
def invert(self) -> Rotation:
"""
Returns the inverse of the current Rotation.
Returns:
The inverse of the current Rotation
"""
if self._rot_mats is not None:
return Rotation(rot_mats=invert_rot_mat(self._rot_mats), quats=None)
elif self._quats is not None:
return Rotation(
rot_mats=None,
quats=invert_quat(self._quats),
normalize_quats=False,
)
else:
raise ValueError("Both rotations are None")
# "Tensor" stuff
def unsqueeze(self, dim: int) -> Rotation:
"""
Analogous to torch.unsqueeze. The dimension is relative to the shape of the Rotation object.
Args:
dim: A positive or negative dimension index.
Returns:
The unsqueezed Rotation.
"""
if dim >= len(self.shape):
raise ValueError("Invalid dimension")
if self._rot_mats is not None:
rot_mats = self._rot_mats.unsqueeze(dim if dim >= 0 else dim - 2)
return Rotation(rot_mats=rot_mats, quats=None)
elif self._quats is not None:
quats = self._quats.unsqueeze(dim if dim >= 0 else dim - 1)
return Rotation(rot_mats=None, quats=quats, normalize_quats=False)
else:
raise ValueError("Both rotations are None")
@staticmethod
def cat(rs: Sequence[Rotation], dim: int) -> Rotation:
"""
Concatenates rotations along one of the batch dimensions. Analogous to torch.cat().
Note that the output of this operation is always a rotation matrix, regardless of the format of input
rotations.
Args:
rs:
A list of rotation objects
dim:
The dimension along which the rotations should be concatenated
Returns:
A concatenated Rotation object in rotation matrix format
"""
rot_mats = torch.cat(
[r.get_rot_mats() for r in rs],
dim=dim if dim >= 0 else dim - 2,
)
return Rotation(rot_mats=rot_mats, quats=None)
def map_tensor_fn(self, fn: Callable[[torch.Tensor], torch.Tensor]) -> Rotation:
"""
Apply a Tensor -> Tensor function to underlying rotation tensors, mapping over the rotation dimension(s). Can
be used e.g. to sum out a one-hot batch dimension.
Args:
fn:
A Tensor -> Tensor function to be mapped over the Rotation
Returns:
The transformed Rotation object
"""
if self._rot_mats is not None:
rot_mats = self._rot_mats.view(self._rot_mats.shape[:-2] + (9,))
rot_mats = torch.stack(list(map(fn, torch.unbind(rot_mats, dim=-1))), dim=-1)
rot_mats = rot_mats.view(rot_mats.shape[:-1] + (3, 3))
return Rotation(rot_mats=rot_mats, quats=None)
elif self._quats is not None:
quats = torch.stack(list(map(fn, torch.unbind(self._quats, dim=-1))), dim=-1)
return Rotation(rot_mats=None, quats=quats, normalize_quats=False)
else:
raise ValueError("Both rotations are None")
def cuda(self) -> Rotation:
"""
Analogous to the cuda() method of torch Tensors
Returns:
A copy of the Rotation in CUDA memory
"""
if self._rot_mats is not None:
return Rotation(rot_mats=self._rot_mats.cuda(), quats=None)
elif self._quats is not None:
return Rotation(rot_mats=None, quats=self._quats.cuda(), normalize_quats=False)
else:
raise ValueError("Both rotations are None")
def to(self, device: Optional[torch.device], dtype: Optional[torch.dtype]) -> Rotation:
"""
Analogous to the to() method of torch Tensors
Args:
device:
A torch device
dtype:
A torch dtype
Returns:
A copy of the Rotation using the new device and dtype
"""
if self._rot_mats is not None:
return Rotation(
rot_mats=self._rot_mats.to(device=device, dtype=dtype),
quats=None,
)
elif self._quats is not None:
return Rotation(
rot_mats=None,
quats=self._quats.to(device=device, dtype=dtype),
normalize_quats=False,
)
else:
raise ValueError("Both rotations are None")
def detach(self) -> Rotation:
"""
Returns a copy of the Rotation whose underlying Tensor has been detached from its torch graph.
Returns:
A copy of the Rotation whose underlying Tensor has been detached from its torch graph
"""
if self._rot_mats is not None:
return Rotation(rot_mats=self._rot_mats.detach(), quats=None)
elif self._quats is not None:
return Rotation(
rot_mats=None,
quats=self._quats.detach(),
normalize_quats=False,
)
else:
raise ValueError("Both rotations are None")
class Rigid:
"""
A class representing a rigid transformation. Little more than a wrapper around two objects: a Rotation object and a
[*, 3] translation Designed to behave approximately like a single torch tensor with the shape of the shared batch
dimensions of its component parts.
"""
def __init__(self, rots: Optional[Rotation], trans: Optional[torch.Tensor]):
"""
Args:
rots: A [*, 3, 3] rotation tensor
trans: A corresponding [*, 3] translation tensor
"""
# (we need device, dtype, etc. from at least one input)
batch_dims, dtype, device, requires_grad = None, None, None, None
if trans is not None:
batch_dims = trans.shape[:-1]
dtype = trans.dtype
device = trans.device
requires_grad = trans.requires_grad
elif rots is not None:
batch_dims = rots.shape
dtype = rots.dtype
device = rots.device
requires_grad = rots.requires_grad
else:
raise ValueError("At least one input argument must be specified")
if rots is None:
rots = Rotation.identity(
batch_dims,
dtype,
device,
requires_grad,
)
elif trans is None:
trans = identity_trans(
batch_dims,
dtype,
device,
requires_grad,
)
assert rots is not None
assert trans is not None
if (rots.shape != trans.shape[:-1]) or (rots.device != trans.device):
raise ValueError("Rots and trans incompatible")
# Force full precision. Happens to the rotations automatically.
trans = trans.to(dtype=torch.float32)
self._rots = rots
self._trans = trans
@staticmethod
def identity(
shape: Tuple[int, ...],
dtype: Optional[torch.dtype] = None,
device: Optional[torch.device] = None,
requires_grad: bool = True,
fmt: str = "quat",
) -> Rigid:
"""
Constructs an identity transformation.
Args:
shape:
The desired shape
dtype:
The dtype of both internal tensors
device:
The device of both internal tensors
requires_grad:
Whether grad should be enabled for the internal tensors
Returns:
The identity transformation
"""
return Rigid(
Rotation.identity(shape, dtype, device, requires_grad, fmt=fmt),
identity_trans(shape, dtype, device, requires_grad),
)
def __getitem__(self, index: Any) -> Rigid:
"""
Indexes the affine transformation with PyTorch-style indices. The index is applied to the shared dimensions of
both the rotation and the translation.
E.g.::
r = Rotation(rot_mats=torch.rand(10, 10, 3, 3), quats=None) t = Rigid(r, torch.rand(10, 10, 3)) indexed =
t[3, 4:6] assert(indexed.shape == (2,)) assert(indexed.get_rots().shape == (2,))
assert(indexed.get_trans().shape == (2, 3))
Args:
index: A standard torch tensor index. E.g. 8, (10, None, 3),
or (3, slice(0, 1, None))
Returns:
The indexed tensor
"""
if type(index) != tuple:
index = (index,)
return Rigid(
self._rots[index],
self._trans[index + (slice(None),)],
)
def __mul__(self, right: torch.Tensor) -> Rigid:
"""
Pointwise left multiplication of the transformation with a tensor. Can be used to e.g. mask the Rigid.
Args:
right:
The tensor multiplicand
Returns:
The product
"""
if not (isinstance(right, torch.Tensor)):
raise TypeError("The other multiplicand must be a Tensor")
new_rots = self._rots * right
new_trans = self._trans * right[..., None]
return Rigid(new_rots, new_trans)
def __rmul__(self, left: torch.Tensor) -> Rigid:
"""
Reverse pointwise multiplication of the transformation with a tensor.
Args:
left:
The left multiplicand
Returns:
The product
"""
return self.__mul__(left)
@property
def shape(self) -> torch.Size:
"""
Returns the shape of the shared dimensions of the rotation and the translation.
Returns:
The shape of the transformation
"""
return self._trans.shape[:-1]
@property
def device(self) -> torch.device:
"""
Returns the device on which the Rigid's tensors are located.
Returns:
The device on which the Rigid's tensors are located
"""
return self._trans.device
def get_rots(self) -> Rotation:
"""
Getter for the rotation.
Returns:
The rotation object
"""
return self._rots
def get_trans(self) -> torch.Tensor:
"""
Getter for the translation.
Returns:
The stored translation
"""
return self._trans
def compose_q_update_vec(self, q_update_vec: torch.Tensor) -> Rigid:
"""
Composes the transformation with a quaternion update vector of shape [*, 6], where the final 6 columns
represent the x, y, and z values of a quaternion of form (1, x, y, z) followed by a 3D translation.
Args:
q_vec: The quaternion update vector.
Returns:
The composed transformation.
"""
q_vec, t_vec = q_update_vec[..., :3], q_update_vec[..., 3:]
new_rots = self._rots.compose_q_update_vec(q_vec)
trans_update = self._rots.apply(t_vec)
new_translation = self._trans + trans_update
return Rigid(new_rots, new_translation)
def compose(self, r: Rigid) -> Rigid:
"""
Composes the current rigid object with another.
Args:
r:
Another Rigid object
Returns:
The composition of the two transformations
"""
new_rot = self._rots.compose_r(r._rots)
new_trans = self._rots.apply(r._trans) + self._trans
return Rigid(new_rot, new_trans)
def apply(self, pts: torch.Tensor) -> torch.Tensor:
"""
Applies the transformation to a coordinate tensor.
Args:
pts: A [*, 3] coordinate tensor.
Returns:
The transformed points.
"""
rotated = self._rots.apply(pts)
return rotated + self._trans
def invert_apply(self, pts: torch.Tensor) -> torch.Tensor:
"""
Applies the inverse of the transformation to a coordinate tensor.
Args:
pts: A [*, 3] coordinate tensor
Returns:
The transformed points.
"""
pts = pts - self._trans
return self._rots.invert_apply(pts)
def invert(self) -> Rigid:
"""
Inverts the transformation.
Returns:
The inverse transformation.
"""
rot_inv = self._rots.invert()
trn_inv = rot_inv.apply(self._trans)
return Rigid(rot_inv, -1 * trn_inv)
def map_tensor_fn(self, fn: Callable[[torch.Tensor], torch.Tensor]) -> Rigid:
"""
Apply a Tensor -> Tensor function to underlying translation and rotation tensors, mapping over the
translation/rotation dimensions respectively.
Args:
fn:
A Tensor -> Tensor function to be mapped over the Rigid
Returns:
The transformed Rigid object
"""
new_rots = self._rots.map_tensor_fn(fn)
new_trans = torch.stack(list(map(fn, torch.unbind(self._trans, dim=-1))), dim=-1)
return Rigid(new_rots, new_trans)
def to_tensor_4x4(self) -> torch.Tensor:
"""
Converts a transformation to a homogenous transformation tensor.
Returns:
A [*, 4, 4] homogenous transformation tensor
"""
tensor = self._trans.new_zeros((*self.shape, 4, 4))
tensor[..., :3, :3] = self._rots.get_rot_mats()
tensor[..., :3, 3] = self._trans
tensor[..., 3, 3] = 1
return tensor
@staticmethod
def from_tensor_4x4(t: torch.Tensor) -> Rigid:
"""
Constructs a transformation from a homogenous transformation tensor.
Args:
t: [*, 4, 4] homogenous transformation tensor
Returns:
T object with shape [*]
"""
if t.shape[-2:] != (4, 4):
raise ValueError("Incorrectly shaped input tensor")
rots = Rotation(rot_mats=t[..., :3, :3], quats=None)
trans = t[..., :3, 3]
return Rigid(rots, trans)
def to_tensor_7(self) -> torch.Tensor:
"""
Converts a transformation to a tensor with 7 final columns, four for the quaternion followed by three for the
translation.
Returns:
A [*, 7] tensor representation of the transformation
"""
tensor = self._trans.new_zeros((*self.shape, 7))
tensor[..., :4] = self._rots.get_quats()
tensor[..., 4:] = self._trans
return tensor
@staticmethod
def from_tensor_7(t: torch.Tensor, normalize_quats: bool = False) -> Rigid:
if t.shape[-1] != 7:
raise ValueError("Incorrectly shaped input tensor")
quats, trans = t[..., :4], t[..., 4:]
rots = Rotation(rot_mats=None, quats=quats, normalize_quats=normalize_quats)
return Rigid(rots, trans)
@staticmethod
def from_3_points(
p_neg_x_axis: torch.Tensor, origin: torch.Tensor, p_xy_plane: torch.Tensor, eps: float = 1e-8
) -> Rigid:
"""
Implements algorithm 21. Constructs transformations from sets of 3 points using the Gram-Schmidt algorithm.
Args:
p_neg_x_axis: [*, 3] coordinates
origin: [*, 3] coordinates used as frame origins
p_xy_plane: [*, 3] coordinates
eps: Small epsilon value
Returns:
A transformation object of shape [*]
"""
p_neg_x_axis_unbound = torch.unbind(p_neg_x_axis, dim=-1)
origin_unbound = torch.unbind(origin, dim=-1)
p_xy_plane_unbound = torch.unbind(p_xy_plane, dim=-1)
e0 = [c1 - c2 for c1, c2 in zip(origin_unbound, p_neg_x_axis_unbound)]
e1 = [c1 - c2 for c1, c2 in zip(p_xy_plane_unbound, origin_unbound)]
denom = torch.sqrt(sum(c * c for c in e0) + eps * torch.ones_like(e0[0]))
e0 = [c / denom for c in e0]
dot = sum((c1 * c2 for c1, c2 in zip(e0, e1)))
e1 = [c2 - c1 * dot for c1, c2 in zip(e0, e1)]
denom = torch.sqrt(sum((c * c for c in e1)) + eps * torch.ones_like(e1[0]))
e1 = [c / denom for c in e1]
e2 = [
e0[1] * e1[2] - e0[2] * e1[1],
e0[2] * e1[0] - e0[0] * e1[2],
e0[0] * e1[1] - e0[1] * e1[0],
]
rots = torch.stack([c for tup in zip(e0, e1, e2) for c in tup], dim=-1)
rots = rots.reshape(rots.shape[:-1] + (3, 3))
rot_obj = Rotation(rot_mats=rots, quats=None)
return Rigid(rot_obj, torch.stack(origin_unbound, dim=-1))
def unsqueeze(self, dim: int) -> Rigid:
"""
Analogous to torch.unsqueeze. The dimension is relative to the shared dimensions of the rotation/translation.
Args:
dim: A positive or negative dimension index.
Returns:
The unsqueezed transformation.
"""
if dim >= len(self.shape):
raise ValueError("Invalid dimension")
rots = self._rots.unsqueeze(dim)
trans = self._trans.unsqueeze(dim if dim >= 0 else dim - 1)
return Rigid(rots, trans)
@staticmethod
def cat(ts: Sequence[Rigid], dim: int) -> Rigid:
"""
Concatenates transformations along a new dimension.
Args:
ts:
A list of T objects
dim:
The dimension along which the transformations should be concatenated
Returns:
A concatenated transformation object
"""
rots = Rotation.cat([t._rots for t in ts], dim)
trans = torch.cat([t._trans for t in ts], dim=dim if dim >= 0 else dim - 1)
return Rigid(rots, trans)
def apply_rot_fn(self, fn: Callable[[Rotation], Rotation]) -> Rigid:
"""
Applies a Rotation -> Rotation function to the stored rotation object.
Args:
fn: A function of type Rotation -> Rotation
Returns:
A transformation object with a transformed rotation.
"""
return Rigid(fn(self._rots), self._trans)
def apply_trans_fn(self, fn: Callable[[torch.Tensor], torch.Tensor]) -> Rigid:
"""
Applies a Tensor -> Tensor function to the stored translation.
Args:
fn:
A function of type Tensor -> Tensor to be applied to the translation
Returns:
A transformation object with a transformed translation.
"""
return Rigid(self._rots, fn(self._trans))
def scale_translation(self, trans_scale_factor: float) -> Rigid:
"""
Scales the translation by a constant factor.
Args:
trans_scale_factor:
The constant factor
Returns:
A transformation object with a scaled translation.
"""
return self.apply_trans_fn(lambda t: t * trans_scale_factor)
def stop_rot_gradient(self) -> Rigid:
"""
Detaches the underlying rotation object
Returns:
A transformation object with detached rotations
"""
return self.apply_rot_fn(lambda r: r.detach())
@staticmethod
def make_transform_from_reference(
n_xyz: torch.Tensor, ca_xyz: torch.Tensor, c_xyz: torch.Tensor, eps: float = 1e-20
) -> Rigid:
"""
Returns a transformation object from reference coordinates.
Note that this method does not take care of symmetries. If you provide the atom positions in the non-standard
way, the N atom will end up not at [-0.527250, 1.359329, 0.0] but instead at [-0.527250, -1.359329, 0.0]. You
need to take care of such cases in your code.
Args:
n_xyz: A [*, 3] tensor of nitrogen xyz coordinates.
ca_xyz: A [*, 3] tensor of carbon alpha xyz coordinates.
c_xyz: A [*, 3] tensor of carbon xyz coordinates.
Returns:
A transformation object. After applying the translation and rotation to the reference backbone, the
coordinates will approximately equal to the input coordinates.
"""
translation = -1 * ca_xyz
n_xyz = n_xyz + translation
c_xyz = c_xyz + translation
c_x, c_y, c_z = [c_xyz[..., i] for i in range(3)]
norm = torch.sqrt(eps + c_x**2 + c_y**2)
sin_c1 = -c_y / norm
cos_c1 = c_x / norm
c1_rots = sin_c1.new_zeros((*sin_c1.shape, 3, 3))
c1_rots[..., 0, 0] = cos_c1
c1_rots[..., 0, 1] = -1 * sin_c1
c1_rots[..., 1, 0] = sin_c1
c1_rots[..., 1, 1] = cos_c1
c1_rots[..., 2, 2] = 1
norm = torch.sqrt(eps + c_x**2 + c_y**2 + c_z**2)
sin_c2 = c_z / norm
cos_c2 = torch.sqrt(c_x**2 + c_y**2) / norm
c2_rots = sin_c2.new_zeros((*sin_c2.shape, 3, 3))
c2_rots[..., 0, 0] = cos_c2
c2_rots[..., 0, 2] = sin_c2
c2_rots[..., 1, 1] = 1
c2_rots[..., 2, 0] = -1 * sin_c2
c2_rots[..., 2, 2] = cos_c2
c_rots = rot_matmul(c2_rots, c1_rots)
n_xyz = rot_vec_mul(c_rots, n_xyz)
_, n_y, n_z = [n_xyz[..., i] for i in range(3)]
norm = torch.sqrt(eps + n_y**2 + n_z**2)
sin_n = -n_z / norm
cos_n = n_y / norm
n_rots = sin_c2.new_zeros((*sin_c2.shape, 3, 3))
n_rots[..., 0, 0] = 1
n_rots[..., 1, 1] = cos_n
n_rots[..., 1, 2] = -1 * sin_n
n_rots[..., 2, 1] = sin_n
n_rots[..., 2, 2] = cos_n
rots = rot_matmul(n_rots, c_rots)
rots = rots.transpose(-1, -2)
translation = -1 * translation
rot_obj = Rotation(rot_mats=rots, quats=None)
return Rigid(rot_obj, translation)
def cuda(self) -> Rigid:
"""
Moves the transformation object to GPU memory
Returns:
A version of the transformation on GPU
"""
return Rigid(self._rots.cuda(), self._trans.cuda())
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/flaubert/tokenization_flaubert.py | # coding=utf-8
# Copyright 2019-present CNRS, Facebook Inc. and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes for Flaubert."""
import json
import os
import re
import unicodedata
from typing import List, Optional, Tuple
from ...tokenization_utils import PreTrainedTokenizer
from ...utils import logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {
"vocab_file": "vocab.json",
"merges_file": "merges.txt",
}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {
"flaubert/flaubert_small_cased": (
"https://huggingface.co/flaubert/flaubert_small_cased/resolve/main/vocab.json"
),
"flaubert/flaubert_base_uncased": (
"https://huggingface.co/flaubert/flaubert_base_uncased/resolve/main/vocab.json"
),
"flaubert/flaubert_base_cased": "https://huggingface.co/flaubert/flaubert_base_cased/resolve/main/vocab.json",
"flaubert/flaubert_large_cased": (
"https://huggingface.co/flaubert/flaubert_large_cased/resolve/main/vocab.json"
),
},
"merges_file": {
"flaubert/flaubert_small_cased": (
"https://huggingface.co/flaubert/flaubert_small_cased/resolve/main/merges.txt"
),
"flaubert/flaubert_base_uncased": (
"https://huggingface.co/flaubert/flaubert_base_uncased/resolve/main/merges.txt"
),
"flaubert/flaubert_base_cased": "https://huggingface.co/flaubert/flaubert_base_cased/resolve/main/merges.txt",
"flaubert/flaubert_large_cased": (
"https://huggingface.co/flaubert/flaubert_large_cased/resolve/main/merges.txt"
),
},
}
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {
"flaubert/flaubert_small_cased": 512,
"flaubert/flaubert_base_uncased": 512,
"flaubert/flaubert_base_cased": 512,
"flaubert/flaubert_large_cased": 512,
}
PRETRAINED_INIT_CONFIGURATION = {
"flaubert/flaubert_small_cased": {"do_lowercase": False},
"flaubert/flaubert_base_uncased": {"do_lowercase": True},
"flaubert/flaubert_base_cased": {"do_lowercase": False},
"flaubert/flaubert_large_cased": {"do_lowercase": False},
}
def convert_to_unicode(text):
"""
Converts `text` to Unicode (if it's not already), assuming UTF-8 input.
"""
def ensure_text(s, encoding="utf-8", errors="strict"):
if isinstance(s, bytes):
return s.decode(encoding, errors)
elif isinstance(s, str):
return s
else:
raise TypeError(f"not expecting type '{type(s)}'")
return ensure_text(text, encoding="utf-8", errors="ignore")
# Copied from transformers.models.xlm.tokenization_xlm.get_pairs
def get_pairs(word):
"""
Return set of symbol pairs in a word. word is represented as tuple of symbols (symbols being variable-length
strings)
"""
pairs = set()
prev_char = word[0]
for char in word[1:]:
pairs.add((prev_char, char))
prev_char = char
return pairs
# Copied from transformers.models.xlm.tokenization_xlm.replace_unicode_punct
def replace_unicode_punct(text):
"""
Port of https://github.com/moses-smt/mosesdecoder/blob/master/scripts/tokenizer/replace-unicode-punctuation.perl
"""
text = text.replace("，", ",")
text = re.sub(r"。\s*", ". ", text)
text = text.replace("、", ",")
text = text.replace("”", '"')
text = text.replace("“", '"')
text = text.replace("∶", ":")
text = text.replace("：", ":")
text = text.replace("？", "?")
text = text.replace("《", '"')
text = text.replace("》", '"')
text = text.replace("）", ")")
text = text.replace("！", "!")
text = text.replace("（", "(")
text = text.replace("；", ";")
text = text.replace("１", "1")
text = text.replace("」", '"')
text = text.replace("「", '"')
text = text.replace("０", "0")
text = text.replace("３", "3")
text = text.replace("２", "2")
text = text.replace("５", "5")
text = text.replace("６", "6")
text = text.replace("９", "9")
text = text.replace("７", "7")
text = text.replace("８", "8")
text = text.replace("４", "4")
text = re.sub(r"．\s*", ". ", text)
text = text.replace("～", "~")
text = text.replace("’", "'")
text = text.replace("…", "...")
text = text.replace("━", "-")
text = text.replace("〈", "<")
text = text.replace("〉", ">")
text = text.replace("【", "[")
text = text.replace("】", "]")
text = text.replace("％", "%")
return text
# Copied from transformers.models.xlm.tokenization_xlm.remove_non_printing_char
def remove_non_printing_char(text):
"""
Port of https://github.com/moses-smt/mosesdecoder/blob/master/scripts/tokenizer/remove-non-printing-char.perl
"""
output = []
for char in text:
cat = unicodedata.category(char)
if cat.startswith("C"):
continue
output.append(char)
return "".join(output)
class FlaubertTokenizer(PreTrainedTokenizer):
"""
Construct a Flaubert tokenizer. Based on Byte-Pair Encoding. The tokenization process is the following:
- Moses preprocessing and tokenization.
- Normalizing all inputs text.
- The arguments `special_tokens` and the function `set_special_tokens`, can be used to add additional symbols (like
"__classify__") to a vocabulary.
- The argument `do_lowercase` controls lower casing (automatically set for pretrained vocabularies).
This tokenizer inherits from [`PreTrainedTokenizer`] which contains most of the main methods. Users should refer to
this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
Vocabulary file.
merges_file (`str`):
Merges file.
do_lowercase (`bool`, *optional*, defaults to `False`):
Controls lower casing.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
bos_token (`str`, *optional*, defaults to `"<s>"`):
The beginning of sequence token that was used during pretraining. Can be used a sequence classifier token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the beginning of
sequence. The token used is the `cls_token`.
</Tip>
sep_token (`str`, *optional*, defaults to `"</s>"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
cls_token (`str`, *optional*, defaults to `"</s>"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
mask_token (`str`, *optional*, defaults to `"<special1>"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
additional_special_tokens (`List[str]`, *optional*, defaults to `['<special0>', '<special1>', '<special2>', '<special3>', '<special4>', '<special5>', '<special6>', '<special7>', '<special8>', '<special9>']`):
List of additional special tokens.
lang2id (`Dict[str, int]`, *optional*):
Dictionary mapping languages string identifiers to their IDs.
id2lang (`Dict[int, str]`, *optional*):
Dictionary mapping language IDs to their string identifiers.
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
pretrained_init_configuration = PRETRAINED_INIT_CONFIGURATION
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
def __init__(
self,
vocab_file,
merges_file,
do_lowercase=False,
unk_token="<unk>",
bos_token="<s>",
sep_token="</s>",
pad_token="<pad>",
cls_token="</s>",
mask_token="<special1>",
additional_special_tokens=[
"<special0>",
"<special1>",
"<special2>",
"<special3>",
"<special4>",
"<special5>",
"<special6>",
"<special7>",
"<special8>",
"<special9>",
],
lang2id=None,
id2lang=None,
**kwargs,
):
do_lowercase_and_remove_accent = kwargs.pop("do_lowercase_and_remove_accent", None)
if do_lowercase_and_remove_accent is not None:
logger.warning(
"`do_lowercase_and_remove_accent` is passed as a keyword argument, but this won't do anything."
" `FlaubertTokenizer` will always set it to `False`."
)
# always `False`
self.do_lowercase_and_remove_accent = False
self.do_lowercase = do_lowercase
try:
import sacremoses
except ImportError:
raise ImportError(
"You need to install sacremoses to use FlaubertTokenizer. "
"See https://pypi.org/project/sacremoses/ for installation."
)
self.sm = sacremoses
# cache of sm.MosesPunctNormalizer instance
self.cache_moses_punct_normalizer = {}
# cache of sm.MosesTokenizer instance
self.cache_moses_tokenizer = {}
self.lang_with_custom_tokenizer = {"zh", "th", "ja"}
self.lang2id = lang2id
self.id2lang = id2lang
if lang2id is not None and id2lang is not None:
assert len(lang2id) == len(id2lang)
self.ja_word_tokenizer = None
self.zh_word_tokenizer = None
with open(vocab_file, encoding="utf-8") as vocab_handle:
self.encoder = json.load(vocab_handle)
self.decoder = {v: k for k, v in self.encoder.items()}
with open(merges_file, encoding="utf-8") as merges_handle:
merges = merges_handle.read().split("\n")[:-1]
merges = [tuple(merge.split()[:2]) for merge in merges]
self.bpe_ranks = dict(zip(merges, range(len(merges))))
self.cache = {}
super().__init__(
unk_token=unk_token,
bos_token=bos_token,
sep_token=sep_token,
pad_token=pad_token,
cls_token=cls_token,
mask_token=mask_token,
additional_special_tokens=additional_special_tokens,
lang2id=lang2id,
id2lang=id2lang,
**kwargs,
)
@property
# Copied from transformers.models.xlm.tokenization_xlm.XLMTokenizer.do_lower_case
def do_lower_case(self):
return self.do_lowercase_and_remove_accent
# Copied from transformers.models.xlm.tokenization_xlm.XLMTokenizer.moses_punct_norm
def moses_punct_norm(self, text, lang):
if lang not in self.cache_moses_punct_normalizer:
punct_normalizer = self.sm.MosesPunctNormalizer(lang=lang)
self.cache_moses_punct_normalizer[lang] = punct_normalizer
else:
punct_normalizer = self.cache_moses_punct_normalizer[lang]
return punct_normalizer.normalize(text)
# Copied from transformers.models.xlm.tokenization_xlm.XLMTokenizer.moses_tokenize
def moses_tokenize(self, text, lang):
if lang not in self.cache_moses_tokenizer:
moses_tokenizer = self.sm.MosesTokenizer(lang=lang)
self.cache_moses_tokenizer[lang] = moses_tokenizer
else:
moses_tokenizer = self.cache_moses_tokenizer[lang]
return moses_tokenizer.tokenize(text, return_str=False, escape=False)
# Copied from transformers.models.xlm.tokenization_xlm.XLMTokenizer.moses_pipeline
def moses_pipeline(self, text, lang):
text = replace_unicode_punct(text)
text = self.moses_punct_norm(text, lang)
text = remove_non_printing_char(text)
return text
# Copied from transformers.models.xlm.tokenization_xlm.XLMTokenizer.ja_tokenize
def ja_tokenize(self, text):
if self.ja_word_tokenizer is None:
try:
import Mykytea
self.ja_word_tokenizer = Mykytea.Mykytea(
f"-model {os.path.expanduser('~')}/local/share/kytea/model.bin"
)
except (AttributeError, ImportError):
logger.error(
"Make sure you install KyTea (https://github.com/neubig/kytea) and it's python wrapper"
" (https://github.com/chezou/Mykytea-python) with the following steps"
)
logger.error("1. git clone [email protected]:neubig/kytea.git && cd kytea")
logger.error("2. autoreconf -i")
logger.error("3. ./configure --prefix=$HOME/local")
logger.error("4. make && make install")
logger.error("5. pip install kytea")
raise
return list(self.ja_word_tokenizer.getWS(text))
@property
# Copied from transformers.models.xlm.tokenization_xlm.XLMTokenizer.vocab_size
def vocab_size(self):
return len(self.encoder)
# Copied from transformers.models.xlm.tokenization_xlm.XLMTokenizer.get_vocab
def get_vocab(self):
return dict(self.encoder, **self.added_tokens_encoder)
# Copied from transformers.models.xlm.tokenization_xlm.XLMTokenizer.bpe
def bpe(self, token):
word = tuple(token[:-1]) + (token[-1] + "</w>",)
if token in self.cache:
return self.cache[token]
pairs = get_pairs(word)
if not pairs:
return token + "</w>"
while True:
bigram = min(pairs, key=lambda pair: self.bpe_ranks.get(pair, float("inf")))
if bigram not in self.bpe_ranks:
break
first, second = bigram
new_word = []
i = 0
while i < len(word):
try:
j = word.index(first, i)
except ValueError:
new_word.extend(word[i:])
break
else:
new_word.extend(word[i:j])
i = j
if word[i] == first and i < len(word) - 1 and word[i + 1] == second:
new_word.append(first + second)
i += 2
else:
new_word.append(word[i])
i += 1
new_word = tuple(new_word)
word = new_word
if len(word) == 1:
break
else:
pairs = get_pairs(word)
word = " ".join(word)
if word == "\n </w>":
word = "\n</w>"
self.cache[token] = word
return word
def preprocess_text(self, text):
text = text.replace("``", '"').replace("''", '"')
text = convert_to_unicode(text)
text = unicodedata.normalize("NFC", text)
if self.do_lowercase:
text = text.lower()
return text
def _tokenize(self, text, bypass_tokenizer=False):
"""
Tokenize a string given language code using Moses.
Details of tokenization:
- [sacremoses](https://github.com/alvations/sacremoses): port of Moses
- Install with `pip install sacremoses`
Args:
- bypass_tokenizer: Allow users to preprocess and tokenize the sentences externally (default = False)
(bool). If True, we only apply BPE.
Returns:
List of tokens.
"""
lang = "fr"
if lang and self.lang2id and lang not in self.lang2id:
logger.error(
"Supplied language code not found in lang2id mapping. Please check that your language is supported by"
" the loaded pretrained model."
)
if bypass_tokenizer:
text = text.split()
else:
text = self.preprocess_text(text)
text = self.moses_pipeline(text, lang=lang)
text = self.moses_tokenize(text, lang=lang)
split_tokens = []
for token in text:
if token:
split_tokens.extend(list(self.bpe(token).split(" ")))
return split_tokens
# Copied from transformers.models.xlm.tokenization_xlm.XLMTokenizer._convert_token_to_id
def _convert_token_to_id(self, token):
"""Converts a token (str) in an id using the vocab."""
return self.encoder.get(token, self.encoder.get(self.unk_token))
# Copied from transformers.models.xlm.tokenization_xlm.XLMTokenizer._convert_id_to_token
def _convert_id_to_token(self, index):
"""Converts an index (integer) in a token (str) using the vocab."""
return self.decoder.get(index, self.unk_token)
# Copied from transformers.models.xlm.tokenization_xlm.XLMTokenizer.convert_tokens_to_string
def convert_tokens_to_string(self, tokens):
"""Converts a sequence of tokens (string) in a single string."""
out_string = "".join(tokens).replace("</w>", " ").strip()
return out_string
# Copied from transformers.models.xlm.tokenization_xlm.XLMTokenizer.build_inputs_with_special_tokens
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. An XLM sequence has the following format:
- single sequence: `<s> X </s>`
- pair of sequences: `<s> A </s> B </s>`
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
bos = [self.bos_token_id]
sep = [self.sep_token_id]
if token_ids_1 is None:
return bos + token_ids_0 + sep
return bos + token_ids_0 + sep + token_ids_1 + sep
# Copied from transformers.models.xlm.tokenization_xlm.XLMTokenizer.get_special_tokens_mask
def get_special_tokens_mask(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieve sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer `prepare_for_model` method.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
already_has_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
`List[int]`: A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
return super().get_special_tokens_mask(
token_ids_0=token_ids_0, token_ids_1=token_ids_1, already_has_special_tokens=True
)
if token_ids_1 is not None:
return [1] + ([0] * len(token_ids_0)) + [1] + ([0] * len(token_ids_1)) + [1]
return [1] + ([0] * len(token_ids_0)) + [1]
# Copied from transformers.models.xlm.tokenization_xlm.XLMTokenizer.create_token_type_ids_from_sequences
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. An XLM sequence
pair mask has the following format:
```
0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1
| first sequence | second sequence |
```
If `token_ids_1` is `None`, this method only returns the first portion of the mask (0s).
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [token type IDs](../glossary#token-type-ids) according to the given sequence(s).
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return len(cls + token_ids_0 + sep) * [0]
return len(cls + token_ids_0 + sep) * [0] + len(token_ids_1 + sep) * [1]
# Copied from transformers.models.xlm.tokenization_xlm.XLMTokenizer.save_vocabulary
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory")
return
vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
merge_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["merges_file"]
)
with open(vocab_file, "w", encoding="utf-8") as f:
f.write(json.dumps(self.encoder, indent=2, sort_keys=True, ensure_ascii=False) + "\n")
index = 0
with open(merge_file, "w", encoding="utf-8") as writer:
for bpe_tokens, token_index in sorted(self.bpe_ranks.items(), key=lambda kv: kv[1]):
if index != token_index:
logger.warning(
f"Saving vocabulary to {merge_file}: BPE merge indices are not consecutive."
" Please check that the tokenizer is not corrupted!"
)
index = token_index
writer.write(" ".join(bpe_tokens) + "\n")
index += 1
return vocab_file, merge_file
# Copied from transformers.models.xlm.tokenization_xlm.XLMTokenizer.__getstate__
def __getstate__(self):
state = self.__dict__.copy()
state["sm"] = None
return state
# Copied from transformers.models.xlm.tokenization_xlm.XLMTokenizer.__setstate__
def __setstate__(self, d):
self.__dict__ = d
try:
import sacremoses
except ImportError:
raise ImportError(
"You need to install sacremoses to use XLMTokenizer. "
"See https://pypi.org/project/sacremoses/ for installation."
)
self.sm = sacremoses
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/flaubert/configuration_flaubert.py | # coding=utf-8
# Copyright 2019-present CNRS, Facebook Inc. and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Flaubert configuration"""
from collections import OrderedDict
from typing import Mapping
from ...configuration_utils import PretrainedConfig
from ...onnx import OnnxConfig
from ...utils import logging
logger = logging.get_logger(__name__)
FLAUBERT_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"flaubert/flaubert_small_cased": "https://huggingface.co/flaubert/flaubert_small_cased/resolve/main/config.json",
"flaubert/flaubert_base_uncased": "https://huggingface.co/flaubert/flaubert_base_uncased/resolve/main/config.json",
"flaubert/flaubert_base_cased": "https://huggingface.co/flaubert/flaubert_base_cased/resolve/main/config.json",
"flaubert/flaubert_large_cased": "https://huggingface.co/flaubert/flaubert_large_cased/resolve/main/config.json",
}
class FlaubertConfig(PretrainedConfig):
"""
This is the configuration class to store the configuration of a [`FlaubertModel`] or a [`TFFlaubertModel`]. It is
used to instantiate a FlauBERT model according to the specified arguments, defining the model architecture.
Instantiating a configuration with the defaults will yield a similar configuration to that of the FlauBERT
[flaubert/flaubert_base_uncased](https://huggingface.co/flaubert/flaubert_base_uncased) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
pre_norm (`bool`, *optional*, defaults to `False`):
Whether to apply the layer normalization before or after the feed forward layer following the attention in
each layer (Vaswani et al., Tensor2Tensor for Neural Machine Translation. 2018)
layerdrop (`float`, *optional*, defaults to 0.0):
Probability to drop layers during training (Fan et al., Reducing Transformer Depth on Demand with
Structured Dropout. ICLR 2020)
vocab_size (`int`, *optional*, defaults to 30145):
Vocabulary size of the FlauBERT model. Defines the number of different tokens that can be represented by
the `inputs_ids` passed when calling [`FlaubertModel`] or [`TFFlaubertModel`].
emb_dim (`int`, *optional*, defaults to 2048):
Dimensionality of the encoder layers and the pooler layer.
n_layer (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
n_head (`int`, *optional*, defaults to 16):
Number of attention heads for each attention layer in the Transformer encoder.
dropout (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_dropout (`float`, *optional*, defaults to 0.1):
The dropout probability for the attention mechanism
gelu_activation (`bool`, *optional*, defaults to `True`):
Whether or not to use a *gelu* activation instead of *relu*.
sinusoidal_embeddings (`bool`, *optional*, defaults to `False`):
Whether or not to use sinusoidal positional embeddings instead of absolute positional embeddings.
causal (`bool`, *optional*, defaults to `False`):
Whether or not the model should behave in a causal manner. Causal models use a triangular attention mask in
order to only attend to the left-side context instead if a bidirectional context.
asm (`bool`, *optional*, defaults to `False`):
Whether or not to use an adaptive log softmax projection layer instead of a linear layer for the prediction
layer.
n_langs (`int`, *optional*, defaults to 1):
The number of languages the model handles. Set to 1 for monolingual models.
use_lang_emb (`bool`, *optional*, defaults to `True`)
Whether to use language embeddings. Some models use additional language embeddings, see [the multilingual
models page](http://huggingface.co/transformers/multilingual.html#xlm-language-embeddings) for information
on how to use them.
max_position_embeddings (`int`, *optional*, defaults to 512):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
embed_init_std (`float`, *optional*, defaults to 2048^-0.5):
The standard deviation of the truncated_normal_initializer for initializing the embedding matrices.
init_std (`int`, *optional*, defaults to 50257):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices except the
embedding matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
bos_index (`int`, *optional*, defaults to 0):
The index of the beginning of sentence token in the vocabulary.
eos_index (`int`, *optional*, defaults to 1):
The index of the end of sentence token in the vocabulary.
pad_index (`int`, *optional*, defaults to 2):
The index of the padding token in the vocabulary.
unk_index (`int`, *optional*, defaults to 3):
The index of the unknown token in the vocabulary.
mask_index (`int`, *optional*, defaults to 5):
The index of the masking token in the vocabulary.
is_encoder(`bool`, *optional*, defaults to `True`):
Whether or not the initialized model should be a transformer encoder or decoder as seen in Vaswani et al.
summary_type (`string`, *optional*, defaults to "first"):
Argument used when doing sequence summary. Used in the sequence classification and multiple choice models.
Has to be one of the following options:
- `"last"`: Take the last token hidden state (like XLNet).
- `"first"`: Take the first token hidden state (like BERT).
- `"mean"`: Take the mean of all tokens hidden states.
- `"cls_index"`: Supply a Tensor of classification token position (like GPT/GPT-2).
- `"attn"`: Not implemented now, use multi-head attention.
summary_use_proj (`bool`, *optional*, defaults to `True`):
Argument used when doing sequence summary. Used in the sequence classification and multiple choice models.
Whether or not to add a projection after the vector extraction.
summary_activation (`str`, *optional*):
Argument used when doing sequence summary. Used in the sequence classification and multiple choice models.
Pass `"tanh"` for a tanh activation to the output, any other value will result in no activation.
summary_proj_to_labels (`bool`, *optional*, defaults to `True`):
Used in the sequence classification and multiple choice models.
Whether the projection outputs should have `config.num_labels` or `config.hidden_size` classes.
summary_first_dropout (`float`, *optional*, defaults to 0.1):
Used in the sequence classification and multiple choice models.
The dropout ratio to be used after the projection and activation.
start_n_top (`int`, *optional*, defaults to 5):
Used in the SQuAD evaluation script.
end_n_top (`int`, *optional*, defaults to 5):
Used in the SQuAD evaluation script.
mask_token_id (`int`, *optional*, defaults to 0):
Model agnostic parameter to identify masked tokens when generating text in an MLM context.
lang_id (`int`, *optional*, defaults to 1):
The ID of the language used by the model. This parameter is used when generating text in a given language.
"""
model_type = "flaubert"
attribute_map = {
"hidden_size": "emb_dim",
"num_attention_heads": "n_heads",
"num_hidden_layers": "n_layers",
"n_words": "vocab_size", # For backward compatibility
}
def __init__(
self,
pre_norm=False,
layerdrop=0.0,
vocab_size=30145,
emb_dim=2048,
n_layers=12,
n_heads=16,
dropout=0.1,
attention_dropout=0.1,
gelu_activation=True,
sinusoidal_embeddings=False,
causal=False,
asm=False,
n_langs=1,
use_lang_emb=True,
max_position_embeddings=512,
embed_init_std=2048**-0.5,
layer_norm_eps=1e-12,
init_std=0.02,
bos_index=0,
eos_index=1,
pad_index=2,
unk_index=3,
mask_index=5,
is_encoder=True,
summary_type="first",
summary_use_proj=True,
summary_activation=None,
summary_proj_to_labels=True,
summary_first_dropout=0.1,
start_n_top=5,
end_n_top=5,
mask_token_id=0,
lang_id=0,
pad_token_id=2,
bos_token_id=0,
**kwargs,
):
"""Constructs FlaubertConfig."""
self.pre_norm = pre_norm
self.layerdrop = layerdrop
self.vocab_size = vocab_size
self.emb_dim = emb_dim
self.n_layers = n_layers
self.n_heads = n_heads
self.dropout = dropout
self.attention_dropout = attention_dropout
self.gelu_activation = gelu_activation
self.sinusoidal_embeddings = sinusoidal_embeddings
self.causal = causal
self.asm = asm
self.n_langs = n_langs
self.use_lang_emb = use_lang_emb
self.layer_norm_eps = layer_norm_eps
self.bos_index = bos_index
self.eos_index = eos_index
self.pad_index = pad_index
self.unk_index = unk_index
self.mask_index = mask_index
self.is_encoder = is_encoder
self.max_position_embeddings = max_position_embeddings
self.embed_init_std = embed_init_std
self.init_std = init_std
self.summary_type = summary_type
self.summary_use_proj = summary_use_proj
self.summary_activation = summary_activation
self.summary_proj_to_labels = summary_proj_to_labels
self.summary_first_dropout = summary_first_dropout
self.start_n_top = start_n_top
self.end_n_top = end_n_top
self.mask_token_id = mask_token_id
self.lang_id = lang_id
if "n_words" in kwargs:
self.n_words = kwargs["n_words"]
super().__init__(pad_token_id=pad_token_id, bos_token_id=bos_token_id, **kwargs)
class FlaubertOnnxConfig(OnnxConfig):
@property
def inputs(self) -> Mapping[str, Mapping[int, str]]:
if self.task == "multiple-choice":
dynamic_axis = {0: "batch", 1: "choice", 2: "sequence"}
else:
dynamic_axis = {0: "batch", 1: "sequence"}
return OrderedDict(
[
("input_ids", dynamic_axis),
("attention_mask", dynamic_axis),
]
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/flaubert/__init__.py | # Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_tf_available, is_torch_available
_import_structure = {
"configuration_flaubert": ["FLAUBERT_PRETRAINED_CONFIG_ARCHIVE_MAP", "FlaubertConfig", "FlaubertOnnxConfig"],
"tokenization_flaubert": ["FlaubertTokenizer"],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_flaubert"] = [
"FLAUBERT_PRETRAINED_MODEL_ARCHIVE_LIST",
"FlaubertForMultipleChoice",
"FlaubertForQuestionAnswering",
"FlaubertForQuestionAnsweringSimple",
"FlaubertForSequenceClassification",
"FlaubertForTokenClassification",
"FlaubertModel",
"FlaubertWithLMHeadModel",
"FlaubertPreTrainedModel",
]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_flaubert"] = [
"TF_FLAUBERT_PRETRAINED_MODEL_ARCHIVE_LIST",
"TFFlaubertForMultipleChoice",
"TFFlaubertForQuestionAnsweringSimple",
"TFFlaubertForSequenceClassification",
"TFFlaubertForTokenClassification",
"TFFlaubertModel",
"TFFlaubertPreTrainedModel",
"TFFlaubertWithLMHeadModel",
]
if TYPE_CHECKING:
from .configuration_flaubert import FLAUBERT_PRETRAINED_CONFIG_ARCHIVE_MAP, FlaubertConfig, FlaubertOnnxConfig
from .tokenization_flaubert import FlaubertTokenizer
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_flaubert import (
FLAUBERT_PRETRAINED_MODEL_ARCHIVE_LIST,
FlaubertForMultipleChoice,
FlaubertForQuestionAnswering,
FlaubertForQuestionAnsweringSimple,
FlaubertForSequenceClassification,
FlaubertForTokenClassification,
FlaubertModel,
FlaubertPreTrainedModel,
FlaubertWithLMHeadModel,
)
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_flaubert import (
TF_FLAUBERT_PRETRAINED_MODEL_ARCHIVE_LIST,
TFFlaubertForMultipleChoice,
TFFlaubertForQuestionAnsweringSimple,
TFFlaubertForSequenceClassification,
TFFlaubertForTokenClassification,
TFFlaubertModel,
TFFlaubertPreTrainedModel,
TFFlaubertWithLMHeadModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/flaubert/modeling_flaubert.py | # coding=utf-8
# Copyright 2019-present CNRS, Facebook Inc. and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch Flaubert model, based on XLM."""
import itertools
import math
from dataclasses import dataclass
from typing import Dict, Optional, Tuple, Union
import numpy as np
import torch
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import gelu
from ...modeling_outputs import (
BaseModelOutput,
MaskedLMOutput,
MultipleChoiceModelOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel, SequenceSummary, SQuADHead
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_flaubert import FlaubertConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "flaubert/flaubert_base_cased"
_CONFIG_FOR_DOC = "FlaubertConfig"
FLAUBERT_PRETRAINED_MODEL_ARCHIVE_LIST = [
"flaubert/flaubert_small_cased",
"flaubert/flaubert_base_uncased",
"flaubert/flaubert_base_cased",
"flaubert/flaubert_large_cased",
# See all Flaubert models at https://huggingface.co/models?filter=flaubert
]
# Copied from transformers.models.xlm.modeling_xlm.create_sinusoidal_embeddings
def create_sinusoidal_embeddings(n_pos, dim, out):
position_enc = np.array([[pos / np.power(10000, 2 * (j // 2) / dim) for j in range(dim)] for pos in range(n_pos)])
out[:, 0::2] = torch.FloatTensor(np.sin(position_enc[:, 0::2]))
out[:, 1::2] = torch.FloatTensor(np.cos(position_enc[:, 1::2]))
out.detach_()
out.requires_grad = False
# Copied from transformers.models.xlm.modeling_xlm.get_masks
def get_masks(slen, lengths, causal, padding_mask=None):
"""
Generate hidden states mask, and optionally an attention mask.
"""
alen = torch.arange(slen, dtype=torch.long, device=lengths.device)
if padding_mask is not None:
mask = padding_mask
else:
assert lengths.max().item() <= slen
mask = alen < lengths[:, None]
# attention mask is the same as mask, or triangular inferior attention (causal)
bs = lengths.size(0)
if causal:
attn_mask = alen[None, None, :].repeat(bs, slen, 1) <= alen[None, :, None]
else:
attn_mask = mask
# sanity check
assert mask.size() == (bs, slen)
assert causal is False or attn_mask.size() == (bs, slen, slen)
return mask, attn_mask
# Copied from transformers.models.xlm.modeling_xlm.MultiHeadAttention
class MultiHeadAttention(nn.Module):
NEW_ID = itertools.count()
def __init__(self, n_heads, dim, config):
super().__init__()
self.layer_id = next(MultiHeadAttention.NEW_ID)
self.dim = dim
self.n_heads = n_heads
self.dropout = config.attention_dropout
assert self.dim % self.n_heads == 0
self.q_lin = nn.Linear(dim, dim)
self.k_lin = nn.Linear(dim, dim)
self.v_lin = nn.Linear(dim, dim)
self.out_lin = nn.Linear(dim, dim)
self.pruned_heads = set()
def prune_heads(self, heads):
attention_head_size = self.dim // self.n_heads
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(heads, self.n_heads, attention_head_size, self.pruned_heads)
# Prune linear layers
self.q_lin = prune_linear_layer(self.q_lin, index)
self.k_lin = prune_linear_layer(self.k_lin, index)
self.v_lin = prune_linear_layer(self.v_lin, index)
self.out_lin = prune_linear_layer(self.out_lin, index, dim=1)
# Update hyper params
self.n_heads = self.n_heads - len(heads)
self.dim = attention_head_size * self.n_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(self, input, mask, kv=None, cache=None, head_mask=None, output_attentions=False):
"""
Self-attention (if kv is None) or attention over source sentence (provided by kv).
"""
# Input is (bs, qlen, dim)
# Mask is (bs, klen) (non-causal) or (bs, klen, klen)
bs, qlen, dim = input.size()
if kv is None:
klen = qlen if cache is None else cache["slen"] + qlen
else:
klen = kv.size(1)
# assert dim == self.dim, f'Dimensions do not match: {dim} input vs {self.dim} configured'
n_heads = self.n_heads
dim_per_head = self.dim // n_heads
mask_reshape = (bs, 1, qlen, klen) if mask.dim() == 3 else (bs, 1, 1, klen)
def shape(x):
"""projection"""
return x.view(bs, -1, self.n_heads, dim_per_head).transpose(1, 2)
def unshape(x):
"""compute context"""
return x.transpose(1, 2).contiguous().view(bs, -1, self.n_heads * dim_per_head)
q = shape(self.q_lin(input)) # (bs, n_heads, qlen, dim_per_head)
if kv is None:
k = shape(self.k_lin(input)) # (bs, n_heads, qlen, dim_per_head)
v = shape(self.v_lin(input)) # (bs, n_heads, qlen, dim_per_head)
elif cache is None or self.layer_id not in cache:
k = v = kv
k = shape(self.k_lin(k)) # (bs, n_heads, qlen, dim_per_head)
v = shape(self.v_lin(v)) # (bs, n_heads, qlen, dim_per_head)
if cache is not None:
if self.layer_id in cache:
if kv is None:
k_, v_ = cache[self.layer_id]
k = torch.cat([k_, k], dim=2) # (bs, n_heads, klen, dim_per_head)
v = torch.cat([v_, v], dim=2) # (bs, n_heads, klen, dim_per_head)
else:
k, v = cache[self.layer_id]
cache[self.layer_id] = (k, v)
q = q / math.sqrt(dim_per_head) # (bs, n_heads, qlen, dim_per_head)
scores = torch.matmul(q, k.transpose(2, 3)) # (bs, n_heads, qlen, klen)
mask = (mask == 0).view(mask_reshape).expand_as(scores) # (bs, n_heads, qlen, klen)
scores.masked_fill_(mask, torch.finfo(scores.dtype).min) # (bs, n_heads, qlen, klen)
weights = nn.functional.softmax(scores.float(), dim=-1).type_as(scores) # (bs, n_heads, qlen, klen)
weights = nn.functional.dropout(weights, p=self.dropout, training=self.training) # (bs, n_heads, qlen, klen)
# Mask heads if we want to
if head_mask is not None:
weights = weights * head_mask
context = torch.matmul(weights, v) # (bs, n_heads, qlen, dim_per_head)
context = unshape(context) # (bs, qlen, dim)
outputs = (self.out_lin(context),)
if output_attentions:
outputs = outputs + (weights,)
return outputs
# Copied from transformers.models.xlm.modeling_xlm.TransformerFFN
class TransformerFFN(nn.Module):
def __init__(self, in_dim, dim_hidden, out_dim, config):
super().__init__()
self.dropout = config.dropout
self.lin1 = nn.Linear(in_dim, dim_hidden)
self.lin2 = nn.Linear(dim_hidden, out_dim)
self.act = gelu if config.gelu_activation else nn.functional.relu
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
def forward(self, input):
return apply_chunking_to_forward(self.ff_chunk, self.chunk_size_feed_forward, self.seq_len_dim, input)
def ff_chunk(self, input):
x = self.lin1(input)
x = self.act(x)
x = self.lin2(x)
x = nn.functional.dropout(x, p=self.dropout, training=self.training)
return x
FLAUBERT_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`FlaubertConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
FLAUBERT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
token_type_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
lengths (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Length of each sentence that can be used to avoid performing attention on padding token indices. You can
also use `attention_mask` for the same result (see above), kept here for compatibility. Indices selected in
`[0, ..., input_ids.size(-1)]`:
cache (`Dict[str, torch.FloatTensor]`, *optional*):
Dictionary strings to `torch.FloatTensor` that contains precomputed hidden-states (key and values in the
attention blocks) as computed by the model (see `cache` output below). Can be used to speed up sequential
decoding. The dictionary object will be modified in-place during the forward pass to add newly computed
hidden-states.
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare Flaubert Model transformer outputting raw hidden-states without any specific head on top.",
FLAUBERT_START_DOCSTRING,
)
# Copied from transformers.models.xlm.modeling_xlm.XLMPredLayer with XLM->Flaubert
class FlaubertPredLayer(nn.Module):
"""
Prediction layer (cross_entropy or adaptive_softmax).
"""
def __init__(self, config):
super().__init__()
self.asm = config.asm
self.n_words = config.n_words
self.pad_index = config.pad_index
dim = config.emb_dim
if config.asm is False:
self.proj = nn.Linear(dim, config.n_words, bias=True)
else:
self.proj = nn.AdaptiveLogSoftmaxWithLoss(
in_features=dim,
n_classes=config.n_words,
cutoffs=config.asm_cutoffs,
div_value=config.asm_div_value,
head_bias=True, # default is False
)
def forward(self, x, y=None):
"""Compute the loss, and optionally the scores."""
outputs = ()
if self.asm is False:
scores = self.proj(x)
outputs = (scores,) + outputs
if y is not None:
loss = nn.functional.cross_entropy(scores.view(-1, self.n_words), y.view(-1), reduction="mean")
outputs = (loss,) + outputs
else:
scores = self.proj.log_prob(x)
outputs = (scores,) + outputs
if y is not None:
_, loss = self.proj(x, y)
outputs = (loss,) + outputs
return outputs
# Copied from transformers.models.xlm.modeling_xlm.XLMPreTrainedModel with XLM->Flaubert
class FlaubertPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = FlaubertConfig
load_tf_weights = None
base_model_prefix = "transformer"
def __init__(self, *inputs, **kwargs):
super().__init__(*inputs, **kwargs)
@property
def dummy_inputs(self):
inputs_list = torch.tensor([[7, 6, 0, 0, 1], [1, 2, 3, 0, 0], [0, 0, 0, 4, 5]])
attns_list = torch.tensor([[1, 1, 0, 0, 1], [1, 1, 1, 0, 0], [1, 0, 0, 1, 1]])
if self.config.use_lang_emb and self.config.n_langs > 1:
langs_list = torch.tensor([[1, 1, 0, 0, 1], [1, 1, 1, 0, 0], [1, 0, 0, 1, 1]])
else:
langs_list = None
return {"input_ids": inputs_list, "attention_mask": attns_list, "langs": langs_list}
def _init_weights(self, module):
"""Initialize the weights."""
if isinstance(module, nn.Embedding):
if self.config is not None and self.config.embed_init_std is not None:
nn.init.normal_(module.weight, mean=0, std=self.config.embed_init_std)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
if isinstance(module, nn.Linear):
if self.config is not None and self.config.init_std is not None:
nn.init.normal_(module.weight, mean=0, std=self.config.init_std)
if module.bias is not None:
nn.init.constant_(module.bias, 0.0)
if isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
class FlaubertModel(FlaubertPreTrainedModel):
def __init__(self, config): # , dico, is_encoder, with_output):
super().__init__(config)
# encoder / decoder, output layer
self.is_encoder = config.is_encoder
self.is_decoder = not config.is_encoder
if self.is_decoder:
raise NotImplementedError("Currently Flaubert can only be used as an encoder")
# self.with_output = with_output
self.causal = config.causal
# dictionary / languages
self.n_langs = config.n_langs
self.use_lang_emb = config.use_lang_emb
self.n_words = config.n_words
self.eos_index = config.eos_index
self.pad_index = config.pad_index
# self.dico = dico
# self.id2lang = config.id2lang
# self.lang2id = config.lang2id
# assert len(self.dico) == self.n_words
# assert len(self.id2lang) == len(self.lang2id) == self.n_langs
# model parameters
self.dim = config.emb_dim # 512 by default
self.hidden_dim = self.dim * 4 # 2048 by default
self.n_heads = config.n_heads # 8 by default
self.n_layers = config.n_layers
self.dropout = config.dropout
self.attention_dropout = config.attention_dropout
assert self.dim % self.n_heads == 0, "transformer dim must be a multiple of n_heads"
# embeddings
self.position_embeddings = nn.Embedding(config.max_position_embeddings, self.dim)
if config.sinusoidal_embeddings:
create_sinusoidal_embeddings(config.max_position_embeddings, self.dim, out=self.position_embeddings.weight)
if config.n_langs > 1 and config.use_lang_emb:
self.lang_embeddings = nn.Embedding(self.n_langs, self.dim)
self.embeddings = nn.Embedding(self.n_words, self.dim, padding_idx=self.pad_index)
self.layer_norm_emb = nn.LayerNorm(self.dim, eps=config.layer_norm_eps)
# transformer layers
self.attentions = nn.ModuleList()
self.layer_norm1 = nn.ModuleList()
self.ffns = nn.ModuleList()
self.layer_norm2 = nn.ModuleList()
# if self.is_decoder:
# self.layer_norm15 = nn.ModuleList()
# self.encoder_attn = nn.ModuleList()
for _ in range(self.n_layers):
self.attentions.append(MultiHeadAttention(self.n_heads, self.dim, config=config))
self.layer_norm1.append(nn.LayerNorm(self.dim, eps=config.layer_norm_eps))
# if self.is_decoder:
# self.layer_norm15.append(nn.LayerNorm(self.dim, eps=config.layer_norm_eps))
# self.encoder_attn.append(MultiHeadAttention(self.n_heads, self.dim, dropout=self.attention_dropout))
self.ffns.append(TransformerFFN(self.dim, self.hidden_dim, self.dim, config=config))
self.layer_norm2.append(nn.LayerNorm(self.dim, eps=config.layer_norm_eps))
if hasattr(config, "pruned_heads"):
pruned_heads = config.pruned_heads.copy().items()
config.pruned_heads = {}
for layer, heads in pruned_heads:
if self.attentions[int(layer)].n_heads == config.n_heads:
self.prune_heads({int(layer): list(map(int, heads))})
# Initialize weights and apply final processing
self.post_init()
self.layerdrop = getattr(config, "layerdrop", 0.0)
self.pre_norm = getattr(config, "pre_norm", False)
self.register_buffer(
"position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)), persistent=False
)
# Copied from transformers.models.xlm.modeling_xlm.XLMModel.get_input_embeddings
def get_input_embeddings(self):
return self.embeddings
# Copied from transformers.models.xlm.modeling_xlm.XLMModel.set_input_embeddings
def set_input_embeddings(self, new_embeddings):
self.embeddings = new_embeddings
# Copied from transformers.models.xlm.modeling_xlm.XLMModel._prune_heads
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.attentions[layer].prune_heads(heads)
@add_start_docstrings_to_model_forward(FLAUBERT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
langs: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
lengths: Optional[torch.LongTensor] = None,
cache: Optional[Dict[str, torch.FloatTensor]] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutput]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# removed: src_enc=None, src_len=None
if input_ids is not None:
bs, slen = input_ids.size()
else:
bs, slen = inputs_embeds.size()[:-1]
device = input_ids.device if input_ids is not None else inputs_embeds.device
if lengths is None:
if input_ids is not None:
lengths = (input_ids != self.pad_index).sum(dim=1).long()
else:
lengths = torch.tensor([slen] * bs, device=device)
# mask = input_ids != self.pad_index
# check inputs
assert lengths.size(0) == bs
assert lengths.max().item() <= slen
# input_ids = input_ids.transpose(0, 1) # batch size as dimension 0
# assert (src_enc is None) == (src_len is None)
# if src_enc is not None:
# assert self.is_decoder
# assert src_enc.size(0) == bs
# generate masks
mask, attn_mask = get_masks(slen, lengths, self.causal, padding_mask=attention_mask)
# if self.is_decoder and src_enc is not None:
# src_mask = torch.arange(src_len.max(), dtype=torch.long, device=lengths.device) < src_len[:, None]
# Setting the position-ids to the registered buffer in constructor, it helps
# when tracing the model without passing position-ids, solves
# isues similar to issue #5664
if position_ids is None:
if hasattr(self, "position_ids"):
position_ids = self.position_ids[:, :slen]
position_ids = position_ids.expand((bs, slen))
else:
position_ids = torch.arange(slen, dtype=torch.long, device=device)
position_ids = position_ids.unsqueeze(0).expand((bs, slen))
else:
assert position_ids.size() == (bs, slen) # (slen, bs)
# position_ids = position_ids.transpose(0, 1)
# langs
if langs is not None:
assert langs.size() == (bs, slen) # (slen, bs)
# langs = langs.transpose(0, 1)
# Prepare head mask if needed
head_mask = self.get_head_mask(head_mask, self.config.n_layers)
# do not recompute cached elements
if cache is not None and input_ids is not None:
_slen = slen - cache["slen"]
input_ids = input_ids[:, -_slen:]
position_ids = position_ids[:, -_slen:]
if langs is not None:
langs = langs[:, -_slen:]
mask = mask[:, -_slen:]
attn_mask = attn_mask[:, -_slen:]
# embeddings
if inputs_embeds is None:
inputs_embeds = self.embeddings(input_ids)
tensor = inputs_embeds + self.position_embeddings(position_ids).expand_as(inputs_embeds)
if langs is not None and self.use_lang_emb and self.config.n_langs > 1:
tensor = tensor + self.lang_embeddings(langs)
if token_type_ids is not None:
tensor = tensor + self.embeddings(token_type_ids)
tensor = self.layer_norm_emb(tensor)
tensor = nn.functional.dropout(tensor, p=self.dropout, training=self.training)
tensor *= mask.unsqueeze(-1).to(tensor.dtype)
# transformer layers
hidden_states = () if output_hidden_states else None
attentions = () if output_attentions else None
for i in range(self.n_layers):
# LayerDrop
if self.training:
dropout_probability = torch.rand([])
if dropout_probability < self.layerdrop:
continue
if output_hidden_states:
hidden_states = hidden_states + (tensor,)
# self attention
if not self.pre_norm:
attn_outputs = self.attentions[i](
tensor,
attn_mask,
cache=cache,
head_mask=head_mask[i],
output_attentions=output_attentions,
)
attn = attn_outputs[0]
if output_attentions:
attentions = attentions + (attn_outputs[1],)
attn = nn.functional.dropout(attn, p=self.dropout, training=self.training)
tensor = tensor + attn
tensor = self.layer_norm1[i](tensor)
else:
tensor_normalized = self.layer_norm1[i](tensor)
attn_outputs = self.attentions[i](tensor_normalized, attn_mask, cache=cache, head_mask=head_mask[i])
attn = attn_outputs[0]
if output_attentions:
attentions = attentions + (attn_outputs[1],)
attn = nn.functional.dropout(attn, p=self.dropout, training=self.training)
tensor = tensor + attn
# encoder attention (for decoder only)
# if self.is_decoder and src_enc is not None:
# attn = self.encoder_attn[i](tensor, src_mask, kv=src_enc, cache=cache)
# attn = nn.functional.dropout(attn, p=self.dropout, training=self.training)
# tensor = tensor + attn
# tensor = self.layer_norm15[i](tensor)
# FFN
if not self.pre_norm:
tensor = tensor + self.ffns[i](tensor)
tensor = self.layer_norm2[i](tensor)
else:
tensor_normalized = self.layer_norm2[i](tensor)
tensor = tensor + self.ffns[i](tensor_normalized)
tensor *= mask.unsqueeze(-1).to(tensor.dtype)
# Add last hidden state
if output_hidden_states:
hidden_states = hidden_states + (tensor,)
# update cache length
if cache is not None:
cache["slen"] += tensor.size(1)
# move back sequence length to dimension 0
# tensor = tensor.transpose(0, 1)
if not return_dict:
return tuple(v for v in [tensor, hidden_states, attentions] if v is not None)
return BaseModelOutput(last_hidden_state=tensor, hidden_states=hidden_states, attentions=attentions)
@add_start_docstrings(
"""
The Flaubert Model transformer with a language modeling head on top (linear layer with weights tied to the input
embeddings).
""",
FLAUBERT_START_DOCSTRING,
)
# Copied transformers.models.xlm.modeling_xlm.XLMWithLMHeadModel with XLM_INPUTS->FLAUBERT_INPUTS,XLM->Flaubert
class FlaubertWithLMHeadModel(FlaubertPreTrainedModel):
_tied_weights_keys = ["pred_layer.proj.weight"]
def __init__(self, config):
super().__init__(config)
self.transformer = FlaubertModel(config)
self.pred_layer = FlaubertPredLayer(config)
# Initialize weights and apply final processing
self.post_init()
def get_output_embeddings(self):
return self.pred_layer.proj
def set_output_embeddings(self, new_embeddings):
self.pred_layer.proj = new_embeddings
def prepare_inputs_for_generation(self, input_ids, **kwargs):
mask_token_id = self.config.mask_token_id
lang_id = self.config.lang_id
effective_batch_size = input_ids.shape[0]
mask_token = torch.full((effective_batch_size, 1), mask_token_id, dtype=torch.long, device=input_ids.device)
input_ids = torch.cat([input_ids, mask_token], dim=1)
if lang_id is not None:
langs = torch.full_like(input_ids, lang_id)
else:
langs = None
return {"input_ids": input_ids, "langs": langs}
@add_start_docstrings_to_model_forward(FLAUBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=MaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
mask="<special1>",
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
langs: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
lengths: Optional[torch.Tensor] = None,
cache: Optional[Dict[str, torch.Tensor]] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, MaskedLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for language modeling. Note that the labels **are shifted** inside the model, i.e. you can set
`labels = input_ids` Indices are selected in `[-100, 0, ..., config.vocab_size]` All labels set to `-100`
are ignored (masked), the loss is only computed for labels in `[0, ..., config.vocab_size]`
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.transformer(
input_ids,
attention_mask=attention_mask,
langs=langs,
token_type_ids=token_type_ids,
position_ids=position_ids,
lengths=lengths,
cache=cache,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
output = transformer_outputs[0]
outputs = self.pred_layer(output, labels) # (loss, logits) or (logits,) depending on if labels are provided.
if not return_dict:
return outputs + transformer_outputs[1:]
return MaskedLMOutput(
loss=outputs[0] if labels is not None else None,
logits=outputs[0] if labels is None else outputs[1],
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
@add_start_docstrings(
"""
Flaubert Model with a sequence classification/regression head on top (a linear layer on top of the pooled output)
e.g. for GLUE tasks.
""",
FLAUBERT_START_DOCSTRING,
)
# Copied transformers.models.xlm.modeling_xlm.XLMForSequenceClassification with XLM_INPUTS->FLAUBERT_INPUTS,XLM->Flaubert
class FlaubertForSequenceClassification(FlaubertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.config = config
self.transformer = FlaubertModel(config)
self.sequence_summary = SequenceSummary(config)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(FLAUBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=SequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
langs: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
lengths: Optional[torch.Tensor] = None,
cache: Optional[Dict[str, torch.Tensor]] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, SequenceClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.transformer(
input_ids,
attention_mask=attention_mask,
langs=langs,
token_type_ids=token_type_ids,
position_ids=position_ids,
lengths=lengths,
cache=cache,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
output = transformer_outputs[0]
logits = self.sequence_summary(output)
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
@add_start_docstrings(
"""
Flaubert Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
FLAUBERT_START_DOCSTRING,
)
# Copied from transformers.models.xlm.modeling_xlm.XLMForTokenClassification with XLM_INPUTS->FLAUBERT_INPUTS,XLM->Flaubert
class FlaubertForTokenClassification(FlaubertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.transformer = FlaubertModel(config)
self.dropout = nn.Dropout(config.dropout)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(FLAUBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
langs: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
lengths: Optional[torch.Tensor] = None,
cache: Optional[Dict[str, torch.Tensor]] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, TokenClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.transformer(
input_ids,
attention_mask=attention_mask,
langs=langs,
token_type_ids=token_type_ids,
position_ids=position_ids,
lengths=lengths,
cache=cache,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output)
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return TokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
Flaubert Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear
layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
FLAUBERT_START_DOCSTRING,
)
# Copied from transformers.models.xlm.modeling_xlm.XLMForQuestionAnsweringSimple with XLM_INPUTS->FLAUBERT_INPUTS,XLM->Flaubert
class FlaubertForQuestionAnsweringSimple(FlaubertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.transformer = FlaubertModel(config)
self.qa_outputs = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(FLAUBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=QuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
langs: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
lengths: Optional[torch.Tensor] = None,
cache: Optional[Dict[str, torch.Tensor]] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
start_positions: Optional[torch.Tensor] = None,
end_positions: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, QuestionAnsweringModelOutput]:
r"""
start_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.transformer(
input_ids,
attention_mask=attention_mask,
langs=langs,
token_type_ids=token_type_ids,
position_ids=position_ids,
lengths=lengths,
cache=cache,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = transformer_outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = logits.split(1, dim=-1)
start_logits = start_logits.squeeze(-1).contiguous()
end_logits = end_logits.squeeze(-1).contiguous()
total_loss = None
if start_positions is not None and end_positions is not None:
# If we are on multi-GPU, split add a dimension
if len(start_positions.size()) > 1:
start_positions = start_positions.squeeze(-1)
if len(end_positions.size()) > 1:
end_positions = end_positions.squeeze(-1)
# sometimes the start/end positions are outside our model inputs, we ignore these terms
ignored_index = start_logits.size(1)
start_positions = start_positions.clamp(0, ignored_index)
end_positions = end_positions.clamp(0, ignored_index)
loss_fct = CrossEntropyLoss(ignore_index=ignored_index)
start_loss = loss_fct(start_logits, start_positions)
end_loss = loss_fct(end_logits, end_positions)
total_loss = (start_loss + end_loss) / 2
if not return_dict:
output = (start_logits, end_logits) + transformer_outputs[1:]
return ((total_loss,) + output) if total_loss is not None else output
return QuestionAnsweringModelOutput(
loss=total_loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
@add_start_docstrings(
"""
Flaubert Model with a beam-search span classification head on top for extractive question-answering tasks like
SQuAD (a linear layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
FLAUBERT_START_DOCSTRING,
)
@dataclass
# Copied from transformer.models.xlm.modeling_xlm.XLMForQuestionAnsweringOutput with XLM->Flaubert
class FlaubertForQuestionAnsweringOutput(ModelOutput):
"""
Base class for outputs of question answering models using a `SquadHead`.
Args:
loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned if both `start_positions` and `end_positions` are provided):
Classification loss as the sum of start token, end token (and is_impossible if provided) classification
losses.
start_top_log_probs (`torch.FloatTensor` of shape `(batch_size, config.start_n_top)`, *optional*, returned if `start_positions` or `end_positions` is not provided):
Log probabilities for the top config.start_n_top start token possibilities (beam-search).
start_top_index (`torch.LongTensor` of shape `(batch_size, config.start_n_top)`, *optional*, returned if `start_positions` or `end_positions` is not provided):
Indices for the top config.start_n_top start token possibilities (beam-search).
end_top_log_probs (`torch.FloatTensor` of shape `(batch_size, config.start_n_top * config.end_n_top)`, *optional*, returned if `start_positions` or `end_positions` is not provided):
Log probabilities for the top `config.start_n_top * config.end_n_top` end token possibilities
(beam-search).
end_top_index (`torch.LongTensor` of shape `(batch_size, config.start_n_top * config.end_n_top)`, *optional*, returned if `start_positions` or `end_positions` is not provided):
Indices for the top `config.start_n_top * config.end_n_top` end token possibilities (beam-search).
cls_logits (`torch.FloatTensor` of shape `(batch_size,)`, *optional*, returned if `start_positions` or `end_positions` is not provided):
Log probabilities for the `is_impossible` label of the answers.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
loss: Optional[torch.FloatTensor] = None
start_top_log_probs: Optional[torch.FloatTensor] = None
start_top_index: Optional[torch.LongTensor] = None
end_top_log_probs: Optional[torch.FloatTensor] = None
end_top_index: Optional[torch.LongTensor] = None
cls_logits: Optional[torch.FloatTensor] = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
# Copied from transformer.models.xlm.modeling_xlm.XLMForQuestionAnswering with XLM_INPUTS->FLAUBERT_INPUTS,XLM->Flaubert
class FlaubertForQuestionAnswering(FlaubertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.transformer = FlaubertModel(config)
self.qa_outputs = SQuADHead(config)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(FLAUBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=FlaubertForQuestionAnsweringOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
langs: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
lengths: Optional[torch.Tensor] = None,
cache: Optional[Dict[str, torch.Tensor]] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
start_positions: Optional[torch.Tensor] = None,
end_positions: Optional[torch.Tensor] = None,
is_impossible: Optional[torch.Tensor] = None,
cls_index: Optional[torch.Tensor] = None,
p_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, FlaubertForQuestionAnsweringOutput]:
r"""
start_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
is_impossible (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels whether a question has an answer or no answer (SQuAD 2.0)
cls_index (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the classification token to use as input for computing plausibility of the
answer.
p_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Optional mask of tokens which can't be in answers (e.g. [CLS], [PAD], ...). 1.0 means token should be
masked. 0.0 mean token is not masked.
Returns:
Example:
```python
>>> from transformers import XLMTokenizer, XLMForQuestionAnswering
>>> import torch
>>> tokenizer = XLMTokenizer.from_pretrained("xlm-mlm-en-2048")
>>> model = XLMForQuestionAnswering.from_pretrained("xlm-mlm-en-2048")
>>> input_ids = torch.tensor(tokenizer.encode("Hello, my dog is cute", add_special_tokens=True)).unsqueeze(
... 0
... ) # Batch size 1
>>> start_positions = torch.tensor([1])
>>> end_positions = torch.tensor([3])
>>> outputs = model(input_ids, start_positions=start_positions, end_positions=end_positions)
>>> loss = outputs.loss
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.transformer(
input_ids,
attention_mask=attention_mask,
langs=langs,
token_type_ids=token_type_ids,
position_ids=position_ids,
lengths=lengths,
cache=cache,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
output = transformer_outputs[0]
outputs = self.qa_outputs(
output,
start_positions=start_positions,
end_positions=end_positions,
cls_index=cls_index,
is_impossible=is_impossible,
p_mask=p_mask,
return_dict=return_dict,
)
if not return_dict:
return outputs + transformer_outputs[1:]
return FlaubertForQuestionAnsweringOutput(
loss=outputs.loss,
start_top_log_probs=outputs.start_top_log_probs,
start_top_index=outputs.start_top_index,
end_top_log_probs=outputs.end_top_log_probs,
end_top_index=outputs.end_top_index,
cls_logits=outputs.cls_logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
@add_start_docstrings(
"""
Flaubert Model with a multiple choice classification head on top (a linear layer on top of the pooled output and a
softmax) e.g. for RocStories/SWAG tasks.
""",
FLAUBERT_START_DOCSTRING,
)
# Copied from transformer.models.xlm.modeling_xlm.XLMForMultipleChoice with XLM_INPUTS->FLAUBERT_INPUTS,XLM->Flaubert
class FlaubertForMultipleChoice(FlaubertPreTrainedModel):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = FlaubertModel(config)
self.sequence_summary = SequenceSummary(config)
self.logits_proj = nn.Linear(config.num_labels, 1)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(
FLAUBERT_INPUTS_DOCSTRING.format("batch_size, num_choices, sequence_length")
)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=MultipleChoiceModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
langs: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
lengths: Optional[torch.Tensor] = None,
cache: Optional[Dict[str, torch.Tensor]] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, MultipleChoiceModelOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the multiple choice classification loss. Indices should be in `[0, ...,
num_choices-1]` where `num_choices` is the size of the second dimension of the input tensors. (See
`input_ids` above)
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
num_choices = input_ids.shape[1] if input_ids is not None else inputs_embeds.shape[1]
input_ids = input_ids.view(-1, input_ids.size(-1)) if input_ids is not None else None
attention_mask = attention_mask.view(-1, attention_mask.size(-1)) if attention_mask is not None else None
token_type_ids = token_type_ids.view(-1, token_type_ids.size(-1)) if token_type_ids is not None else None
position_ids = position_ids.view(-1, position_ids.size(-1)) if position_ids is not None else None
langs = langs.view(-1, langs.size(-1)) if langs is not None else None
inputs_embeds = (
inputs_embeds.view(-1, inputs_embeds.size(-2), inputs_embeds.size(-1))
if inputs_embeds is not None
else None
)
if lengths is not None:
logger.warning(
"The `lengths` parameter cannot be used with the Flaubert multiple choice models. Please use the "
"attention mask instead."
)
lengths = None
transformer_outputs = self.transformer(
input_ids=input_ids,
attention_mask=attention_mask,
langs=langs,
token_type_ids=token_type_ids,
position_ids=position_ids,
lengths=lengths,
cache=cache,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
output = transformer_outputs[0]
logits = self.sequence_summary(output)
logits = self.logits_proj(logits)
reshaped_logits = logits.view(-1, num_choices)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(reshaped_logits, labels)
if not return_dict:
output = (reshaped_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return MultipleChoiceModelOutput(
loss=loss,
logits=reshaped_logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/flaubert/modeling_tf_flaubert.py | # coding=utf-8
# Copyright 2019-present, Facebook, Inc and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
TF 2.0 Flaubert model.
"""
from __future__ import annotations
import itertools
import random
import warnings
from dataclasses import dataclass
from typing import Dict, Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFMultipleChoiceModelOutput,
TFQuestionAnsweringModelOutput,
TFSequenceClassifierOutput,
TFTokenClassifierOutput,
)
from ...modeling_tf_utils import (
TFModelInputType,
TFMultipleChoiceLoss,
TFPreTrainedModel,
TFQuestionAnsweringLoss,
TFSequenceClassificationLoss,
TFSequenceSummary,
TFSharedEmbeddings,
TFTokenClassificationLoss,
get_initializer,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import check_embeddings_within_bounds, shape_list, stable_softmax
from ...utils import (
MULTIPLE_CHOICE_DUMMY_INPUTS,
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
)
from .configuration_flaubert import FlaubertConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "flaubert/flaubert_base_cased"
_CONFIG_FOR_DOC = "FlaubertConfig"
TF_FLAUBERT_PRETRAINED_MODEL_ARCHIVE_LIST = [
# See all Flaubert models at https://huggingface.co/models?filter=flaubert
]
FLAUBERT_START_DOCSTRING = r"""
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a [tf.keras.Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model) subclass. Use it
as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to general usage and
behavior.
<Tip>
TensorFlow models and layers in `transformers` accept two formats as input:
- having all inputs as keyword arguments (like PyTorch models), or
- having all inputs as a list, tuple or dict in the first positional argument.
The reason the second format is supported is that Keras methods prefer this format when passing inputs to models
and layers. Because of this support, when using methods like `model.fit()` things should "just work" for you - just
pass your inputs and labels in any format that `model.fit()` supports! If, however, you want to use the second
format outside of Keras methods like `fit()` and `predict()`, such as when creating your own layers or models with
the Keras `Functional` API, there are three possibilities you can use to gather all the input Tensors in the first
positional argument:
- a single Tensor with `input_ids` only and nothing else: `model(input_ids)`
- a list of varying length with one or several input Tensors IN THE ORDER given in the docstring:
`model([input_ids, attention_mask])` or `model([input_ids, attention_mask, token_type_ids])`
- a dictionary with one or several input Tensors associated to the input names given in the docstring:
`model({"input_ids": input_ids, "token_type_ids": token_type_ids})`
Note that when creating models and layers with
[subclassing](https://keras.io/guides/making_new_layers_and_models_via_subclassing/) then you don't need to worry
about any of this, as you can just pass inputs like you would to any other Python function!
</Tip>
Parameters:
config ([`FlaubertConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
FLAUBERT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`Numpy array` or `tf.Tensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.__call__`] and
[`PreTrainedTokenizer.encode`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`Numpy array` or `tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- `1` for tokens that are **not masked**,
- `0` for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
langs (`tf.Tensor` or `Numpy array` of shape `(batch_size, sequence_length)`, *optional*):
A parallel sequence of tokens to be used to indicate the language of each token in the input. Indices are
languages ids which can be obtained from the language names by using two conversion mappings provided in
the configuration of the model (only provided for multilingual models). More precisely, the *language name
to language id* mapping is in `model.config.lang2id` (which is a dictionary string to int) and the
*language id to language name* mapping is in `model.config.id2lang` (dictionary int to string).
See usage examples detailed in the [multilingual documentation](../multilingual).
token_type_ids (`tf.Tensor` or `Numpy array` of shape `(batch_size, sequence_length)`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- `0` corresponds to a *sentence A* token,
- `1` corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`tf.Tensor` or `Numpy array` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
lengths (`tf.Tensor` or `Numpy array` of shape `(batch_size,)`, *optional*):
Length of each sentence that can be used to avoid performing attention on padding token indices. You can
also use *attention_mask* for the same result (see above), kept here for compatibility Indices selected in
`[0, ..., input_ids.size(-1)]`:
cache (`Dict[str, tf.Tensor]`, *optional*):
Dictionary string to `tf.FloatTensor` that contains precomputed hidden states (key and values in the
attention blocks) as computed by the model (see `cache` output below). Can be used to speed up sequential
decoding.
The dictionary object will be modified in-place during the forward pass to add newly computed
hidden-states.
head_mask (`Numpy array` or `tf.Tensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- `1` indicates the head is **not masked**,
- `0` indicates the head is **masked**.
inputs_embeds (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail. This argument can be used only in eager mode, in graph mode the value in the
config will be used instead.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail. This argument can be used only in eager mode, in graph mode the value in the config will be
used instead.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple. This argument can be used in
eager mode, in graph mode the value will always be set to True.
training (`bool`, *optional*, defaults to `False`):
Whether or not to use the model in training mode (some modules like dropout modules have different
behaviors between training and evaluation).
"""
def get_masks(slen, lengths, causal, padding_mask=None):
"""
Generate hidden states mask, and optionally an attention mask.
"""
bs = shape_list(lengths)[0]
if padding_mask is not None:
mask = padding_mask
else:
# assert lengths.max().item() <= slen
alen = tf.range(slen, dtype=lengths.dtype)
mask = alen < tf.expand_dims(lengths, axis=1)
# attention mask is the same as mask, or triangular inferior attention (causal)
if causal:
attn_mask = tf.less_equal(
tf.tile(tf.reshape(alen, (1, 1, slen)), (bs, slen, 1)), tf.reshape(alen, (1, slen, 1))
)
else:
attn_mask = mask
# sanity check
# assert shape_list(mask) == [bs, slen]
tf.debugging.assert_equal(shape_list(mask), [bs, slen])
if causal:
tf.debugging.assert_equal(shape_list(attn_mask), [bs, slen, slen])
return mask, attn_mask
class TFFlaubertPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = FlaubertConfig
base_model_prefix = "transformer"
@property
def dummy_inputs(self):
# Sometimes Flaubert has language embeddings so don't forget to build them as well if needed
inputs_list = tf.constant([[7, 6, 0, 0, 1], [1, 2, 3, 0, 0], [0, 0, 0, 4, 5]], dtype=tf.int32)
attns_list = tf.constant([[1, 1, 0, 0, 1], [1, 1, 1, 0, 0], [1, 0, 0, 1, 1]], dtype=tf.int32)
if self.config.use_lang_emb and self.config.n_langs > 1:
return {
"input_ids": inputs_list,
"attention_mask": attns_list,
"langs": tf.constant([[1, 1, 0, 0, 1], [1, 1, 1, 0, 0], [1, 0, 0, 1, 1]], dtype=tf.int32),
}
else:
return {"input_ids": inputs_list, "attention_mask": attns_list}
@add_start_docstrings(
"The bare Flaubert Model transformer outputting raw hidden-states without any specific head on top.",
FLAUBERT_START_DOCSTRING,
)
class TFFlaubertModel(TFFlaubertPreTrainedModel):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFFlaubertMainLayer(config, name="transformer")
@unpack_inputs
@add_start_docstrings_to_model_forward(FLAUBERT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFBaseModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: np.ndarray | tf.Tensor | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
langs: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
lengths: np.ndarray | tf.Tensor | None = None,
cache: Optional[Dict[str, tf.Tensor]] = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[Tuple, TFBaseModelOutput]:
outputs = self.transformer(
input_ids=input_ids,
attention_mask=attention_mask,
langs=langs,
token_type_ids=token_type_ids,
position_ids=position_ids,
lengths=lengths,
cache=cache,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
# Copied from transformers.models.xlm.modeling_tf_xlm.TFXLMMultiHeadAttention with XLM->Flaubert
class TFFlaubertMultiHeadAttention(tf.keras.layers.Layer):
NEW_ID = itertools.count()
def __init__(self, n_heads, dim, config, **kwargs):
super().__init__(**kwargs)
self.layer_id = next(TFFlaubertMultiHeadAttention.NEW_ID)
self.dim = dim
self.n_heads = n_heads
self.output_attentions = config.output_attentions
assert self.dim % self.n_heads == 0
self.q_lin = tf.keras.layers.Dense(dim, kernel_initializer=get_initializer(config.init_std), name="q_lin")
self.k_lin = tf.keras.layers.Dense(dim, kernel_initializer=get_initializer(config.init_std), name="k_lin")
self.v_lin = tf.keras.layers.Dense(dim, kernel_initializer=get_initializer(config.init_std), name="v_lin")
self.out_lin = tf.keras.layers.Dense(dim, kernel_initializer=get_initializer(config.init_std), name="out_lin")
self.dropout = tf.keras.layers.Dropout(config.attention_dropout)
self.pruned_heads = set()
self.dim = dim
def prune_heads(self, heads):
raise NotImplementedError
def call(self, input, mask, kv, cache, head_mask, output_attentions, training=False):
"""
Self-attention (if kv is None) or attention over source sentence (provided by kv).
"""
# Input is (bs, qlen, dim)
# Mask is (bs, klen) (non-causal) or (bs, klen, klen)
bs, qlen, dim = shape_list(input)
if kv is None:
klen = qlen if cache is None else cache["slen"] + qlen
else:
klen = shape_list(kv)[1]
# assert dim == self.dim, f'Dimensions do not match: {dim} input vs {self.dim} configured'
dim_per_head = self.dim // self.n_heads
mask_reshape = (bs, 1, qlen, klen) if len(shape_list(mask)) == 3 else (bs, 1, 1, klen)
def shape(x):
"""projection"""
return tf.transpose(tf.reshape(x, (bs, -1, self.n_heads, dim_per_head)), perm=(0, 2, 1, 3))
def unshape(x):
"""compute context"""
return tf.reshape(tf.transpose(x, perm=(0, 2, 1, 3)), (bs, -1, self.n_heads * dim_per_head))
q = shape(self.q_lin(input)) # (bs, n_heads, qlen, dim_per_head)
if kv is None:
k = shape(self.k_lin(input)) # (bs, n_heads, qlen, dim_per_head)
v = shape(self.v_lin(input)) # (bs, n_heads, qlen, dim_per_head)
elif cache is None or self.layer_id not in cache:
k = v = kv
k = shape(self.k_lin(k)) # (bs, n_heads, qlen, dim_per_head)
v = shape(self.v_lin(v)) # (bs, n_heads, qlen, dim_per_head)
if cache is not None:
if self.layer_id in cache:
if kv is None:
k_, v_ = cache[self.layer_id]
k = tf.concat([k_, k], axis=2) # (bs, n_heads, klen, dim_per_head)
v = tf.concat([v_, v], axis=2) # (bs, n_heads, klen, dim_per_head)
else:
k, v = cache[self.layer_id]
cache[self.layer_id] = (k, v)
f_dim_per_head = tf.cast(dim_per_head, dtype=q.dtype)
q = tf.multiply(q, tf.math.rsqrt(f_dim_per_head)) # (bs, n_heads, qlen, dim_per_head)
k = tf.cast(k, dtype=q.dtype)
scores = tf.matmul(q, k, transpose_b=True) # (bs, n_heads, qlen, klen)
mask = tf.reshape(mask, mask_reshape) # (bs, n_heads, qlen, klen)
# scores.masked_fill_(mask, -float('inf')) # (bs, n_heads, qlen, klen)
mask = tf.cast(mask, dtype=scores.dtype)
scores = scores - 1e30 * (1.0 - mask)
weights = stable_softmax(scores, axis=-1) # (bs, n_heads, qlen, klen)
weights = self.dropout(weights, training=training) # (bs, n_heads, qlen, klen)
# Mask heads if we want to
if head_mask is not None:
weights = weights * head_mask
context = tf.matmul(weights, v) # (bs, n_heads, qlen, dim_per_head)
context = unshape(context) # (bs, qlen, dim)
outputs = (self.out_lin(context),)
if output_attentions:
outputs = outputs + (weights,)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "q_lin", None) is not None:
with tf.name_scope(self.q_lin.name):
self.q_lin.build([None, None, self.dim])
if getattr(self, "k_lin", None) is not None:
with tf.name_scope(self.k_lin.name):
self.k_lin.build([None, None, self.dim])
if getattr(self, "v_lin", None) is not None:
with tf.name_scope(self.v_lin.name):
self.v_lin.build([None, None, self.dim])
if getattr(self, "out_lin", None) is not None:
with tf.name_scope(self.out_lin.name):
self.out_lin.build([None, None, self.dim])
# Copied from transformers.models.xlm.modeling_tf_xlm.TFXLMTransformerFFN
class TFFlaubertTransformerFFN(tf.keras.layers.Layer):
def __init__(self, in_dim, dim_hidden, out_dim, config, **kwargs):
super().__init__(**kwargs)
self.lin1 = tf.keras.layers.Dense(dim_hidden, kernel_initializer=get_initializer(config.init_std), name="lin1")
self.lin2 = tf.keras.layers.Dense(out_dim, kernel_initializer=get_initializer(config.init_std), name="lin2")
self.act = get_tf_activation("gelu") if config.gelu_activation else get_tf_activation("relu")
self.dropout = tf.keras.layers.Dropout(config.dropout)
self.in_dim = in_dim
self.dim_hidden = dim_hidden
def call(self, input, training=False):
x = self.lin1(input)
x = self.act(x)
x = self.lin2(x)
x = self.dropout(x, training=training)
return x
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "lin1", None) is not None:
with tf.name_scope(self.lin1.name):
self.lin1.build([None, None, self.in_dim])
if getattr(self, "lin2", None) is not None:
with tf.name_scope(self.lin2.name):
self.lin2.build([None, None, self.dim_hidden])
@keras_serializable
class TFFlaubertMainLayer(tf.keras.layers.Layer):
config_class = FlaubertConfig
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.config = config
self.n_heads = config.n_heads
self.n_langs = config.n_langs
self.dim = config.emb_dim
self.hidden_dim = self.dim * 4
self.n_words = config.n_words
self.pad_index = config.pad_index
self.causal = config.causal
self.n_layers = config.n_layers
self.use_lang_emb = config.use_lang_emb
self.layerdrop = getattr(config, "layerdrop", 0.0)
self.pre_norm = getattr(config, "pre_norm", False)
self.output_attentions = config.output_attentions
self.output_hidden_states = config.output_hidden_states
self.return_dict = config.use_return_dict
self.max_position_embeddings = config.max_position_embeddings
self.embed_init_std = config.embed_init_std
self.dropout = tf.keras.layers.Dropout(config.dropout)
self.embeddings = TFSharedEmbeddings(
self.n_words, self.dim, initializer_range=config.embed_init_std, name="embeddings"
)
self.layer_norm_emb = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm_emb")
self.attentions = []
self.layer_norm1 = []
self.ffns = []
self.layer_norm2 = []
for i in range(self.n_layers):
self.attentions.append(
TFFlaubertMultiHeadAttention(self.n_heads, self.dim, config=config, name=f"attentions_._{i}")
)
self.layer_norm1.append(
tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name=f"layer_norm1_._{i}")
)
# if self.is_decoder:
# self.layer_norm15.append(nn.LayerNorm(self.dim, eps=config.layer_norm_eps))
# self.encoder_attn.append(MultiHeadAttention(self.n_heads, self.dim, dropout=self.attention_dropout))
self.ffns.append(
TFFlaubertTransformerFFN(self.dim, self.hidden_dim, self.dim, config=config, name=f"ffns_._{i}")
)
self.layer_norm2.append(
tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name=f"layer_norm2_._{i}")
)
def build(self, input_shape=None):
with tf.name_scope("position_embeddings"):
self.position_embeddings = self.add_weight(
name="embeddings",
shape=[self.max_position_embeddings, self.dim],
initializer=get_initializer(self.embed_init_std),
)
if self.n_langs > 1 and self.use_lang_emb:
with tf.name_scope("lang_embeddings"):
self.lang_embeddings = self.add_weight(
name="embeddings",
shape=[self.n_langs, self.dim],
initializer=get_initializer(self.embed_init_std),
)
if self.built:
return
self.built = True
if getattr(self, "embeddings", None) is not None:
with tf.name_scope(self.embeddings.name):
self.embeddings.build(None)
if getattr(self, "layer_norm_emb", None) is not None:
with tf.name_scope(self.layer_norm_emb.name):
self.layer_norm_emb.build([None, None, self.dim])
for layer in self.attentions:
with tf.name_scope(layer.name):
layer.build(None)
for layer in self.layer_norm1:
with tf.name_scope(layer.name):
layer.build([None, None, self.dim])
for layer in self.ffns:
with tf.name_scope(layer.name):
layer.build(None)
for layer in self.layer_norm2:
with tf.name_scope(layer.name):
layer.build([None, None, self.dim])
def get_input_embeddings(self):
return self.embeddings
def set_input_embeddings(self, value):
self.embeddings.weight = value
self.embeddings.vocab_size = shape_list(value)[0]
@unpack_inputs
def call(
self,
input_ids: np.ndarray | tf.Tensor | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
langs: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
lengths: np.ndarray | tf.Tensor | None = None,
cache: Optional[Dict[str, tf.Tensor]] = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[Tuple, TFBaseModelOutput]:
# removed: src_enc=None, src_len=None
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
bs, slen = shape_list(input_ids)
elif inputs_embeds is not None:
bs, slen = shape_list(inputs_embeds)[:2]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if lengths is None:
if input_ids is not None:
lengths = tf.reduce_sum(
tf.cast(tf.not_equal(input_ids, self.pad_index), dtype=input_ids.dtype), axis=1
)
else:
lengths = tf.convert_to_tensor([slen] * bs)
# mask = input_ids != self.pad_index
# check inputs
# assert shape_list(lengths)[0] == bs
(
tf.debugging.assert_equal(shape_list(lengths)[0], bs),
f"Expected batch size {shape_list(lengths)[0]} and received batch size {bs} mismatched",
)
# assert lengths.max().item() <= slen
# input_ids = input_ids.transpose(0, 1) # batch size as dimension 0
# assert (src_enc is None) == (src_len is None)
# if src_enc is not None:
# assert self.is_decoder
# assert src_enc.size(0) == bs
# generate masks
mask, attn_mask = get_masks(slen, lengths, self.causal, padding_mask=attention_mask)
# if self.is_decoder and src_enc is not None:
# src_mask = torch.arange(src_len.max(), dtype=torch.long, device=lengths.device) < src_len[:, None]
# position_ids
if position_ids is None:
position_ids = tf.expand_dims(tf.range(slen), axis=0)
position_ids = tf.tile(position_ids, (bs, 1))
# assert shape_list(position_ids) == [bs, slen] # (slen, bs)
(
tf.debugging.assert_equal(shape_list(position_ids), [bs, slen]),
f"Position id shape {shape_list(position_ids)} and input shape {[bs, slen]} mismatched",
)
# position_ids = position_ids.transpose(0, 1)
# langs
if langs is not None:
# assert shape_list(langs) == [bs, slen] # (slen, bs)
(
tf.debugging.assert_equal(shape_list(langs), [bs, slen]),
f"Lang shape {shape_list(langs)} and input shape {[bs, slen]} mismatched",
)
# langs = langs.transpose(0, 1)
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x qlen x klen]
if head_mask is not None:
raise NotImplementedError
else:
head_mask = [None] * self.n_layers
# do not recompute cached elements
if cache is not None and input_ids is not None:
_slen = slen - cache["slen"]
input_ids = input_ids[:, -_slen:]
position_ids = position_ids[:, -_slen:]
if langs is not None:
langs = langs[:, -_slen:]
mask = mask[:, -_slen:]
attn_mask = attn_mask[:, -_slen:]
# embeddings
if inputs_embeds is None:
check_embeddings_within_bounds(input_ids, self.embeddings.vocab_size)
inputs_embeds = self.embeddings(input_ids)
tensor = inputs_embeds + tf.gather(self.position_embeddings, position_ids)
if langs is not None and self.use_lang_emb:
tensor = tensor + tf.gather(self.lang_embeddings, langs)
if token_type_ids is not None:
tensor = tensor + self.embeddings(token_type_ids)
tensor = self.layer_norm_emb(tensor)
tensor = self.dropout(tensor, training=training)
mask = tf.cast(mask, dtype=tensor.dtype)
tensor = tensor * tf.expand_dims(mask, axis=-1)
# hidden_states and attentions cannot be None in graph mode.
hidden_states = () if output_hidden_states else None
attentions = () if output_attentions else None
# transformer layers
for i in range(self.n_layers):
# LayerDrop
dropout_probability = random.uniform(0, 1)
if training and (dropout_probability < self.layerdrop):
continue
if output_hidden_states:
hidden_states = hidden_states + (tensor,)
# self attention
if not self.pre_norm:
attn_outputs = self.attentions[i](
tensor,
attn_mask,
None,
cache,
head_mask[i],
output_attentions,
training=training,
)
attn = attn_outputs[0]
if output_attentions:
attentions = attentions + (attn_outputs[1],)
attn = self.dropout(attn, training=training)
tensor = tensor + attn
tensor = self.layer_norm1[i](tensor)
else:
tensor_normalized = self.layer_norm1[i](tensor)
attn_outputs = self.attentions[i](
tensor_normalized,
attn_mask,
None,
cache,
head_mask[i],
output_attentions,
training=training,
)
attn = attn_outputs[0]
if output_attentions:
attentions = attentions + (attn_outputs[1],)
attn = self.dropout(attn, training=training)
tensor = tensor + attn
# encoder attention (for decoder only)
# if self.is_decoder and src_enc is not None:
# attn = self.encoder_attn[i](tensor, src_mask, kv=src_enc, cache=cache)
# attn = nn.functional.dropout(attn, p=self.dropout, training=self.training)
# tensor = tensor + attn
# tensor = self.layer_norm15[i](tensor)
# FFN
if not self.pre_norm:
tensor = tensor + self.ffns[i](tensor)
tensor = self.layer_norm2[i](tensor)
else:
tensor_normalized = self.layer_norm2[i](tensor)
tensor = tensor + self.ffns[i](tensor_normalized)
tensor = tensor * tf.expand_dims(mask, axis=-1)
# Add last hidden state
if output_hidden_states:
hidden_states = hidden_states + (tensor,)
# update cache length
if cache is not None:
cache["slen"] += tensor.size(1)
# move back sequence length to dimension 0
# tensor = tensor.transpose(0, 1)
if not return_dict:
return tuple(v for v in [tensor, hidden_states, attentions] if v is not None)
return TFBaseModelOutput(last_hidden_state=tensor, hidden_states=hidden_states, attentions=attentions)
# Copied from transformers.models.xlm.modeling_tf_xlm.TFXLMPredLayer
class TFFlaubertPredLayer(tf.keras.layers.Layer):
"""
Prediction layer (cross_entropy or adaptive_softmax).
"""
def __init__(self, config, input_embeddings, **kwargs):
super().__init__(**kwargs)
self.asm = config.asm
self.n_words = config.n_words
self.pad_index = config.pad_index
if config.asm is False:
self.input_embeddings = input_embeddings
else:
raise NotImplementedError
# self.proj = nn.AdaptiveLogSoftmaxWithLoss(
# in_features=dim,
# n_classes=config.n_words,
# cutoffs=config.asm_cutoffs,
# div_value=config.asm_div_value,
# head_bias=True, # default is False
# )
def build(self, input_shape):
# The output weights are the same as the input embeddings, but there is an output-only bias for each token.
self.bias = self.add_weight(shape=(self.n_words,), initializer="zeros", trainable=True, name="bias")
super().build(input_shape)
def get_output_embeddings(self):
return self.input_embeddings
def set_output_embeddings(self, value):
self.input_embeddings.weight = value
self.input_embeddings.vocab_size = shape_list(value)[0]
def get_bias(self):
return {"bias": self.bias}
def set_bias(self, value):
self.bias = value["bias"]
self.vocab_size = shape_list(value["bias"])[0]
def call(self, hidden_states):
hidden_states = self.input_embeddings(hidden_states, mode="linear")
hidden_states = hidden_states + self.bias
return hidden_states
@dataclass
class TFFlaubertWithLMHeadModelOutput(ModelOutput):
"""
Base class for [`TFFlaubertWithLMHeadModel`] outputs.
Args:
logits (`tf.Tensor` of shape `(batch_size, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head (scores for each vocabulary token before SoftMax).
hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of shape
`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
logits: tf.Tensor = None
hidden_states: Tuple[tf.Tensor] | None = None
attentions: Tuple[tf.Tensor] | None = None
@add_start_docstrings(
"""
The Flaubert Model transformer with a language modeling head on top (linear layer with weights tied to the input
embeddings).
""",
FLAUBERT_START_DOCSTRING,
)
class TFFlaubertWithLMHeadModel(TFFlaubertPreTrainedModel):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFFlaubertMainLayer(config, name="transformer")
self.pred_layer = TFFlaubertPredLayer(config, self.transformer.embeddings, name="pred_layer_._proj")
# Flaubert does not have past caching features
self.supports_xla_generation = False
def get_lm_head(self):
return self.pred_layer
def get_prefix_bias_name(self):
warnings.warn("The method get_prefix_bias_name is deprecated. Please use `get_bias` instead.", FutureWarning)
return self.name + "/" + self.pred_layer.name
def prepare_inputs_for_generation(self, inputs, **kwargs):
mask_token_id = self.config.mask_token_id
lang_id = self.config.lang_id
effective_batch_size = inputs.shape[0]
mask_token = tf.fill((effective_batch_size, 1), 1) * mask_token_id
inputs = tf.concat([inputs, mask_token], axis=1)
if lang_id is not None:
langs = tf.ones_like(inputs) * lang_id
else:
langs = None
return {"input_ids": inputs, "langs": langs}
@unpack_inputs
@add_start_docstrings_to_model_forward(FLAUBERT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFFlaubertWithLMHeadModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: np.ndarray | tf.Tensor | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
langs: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
lengths: np.ndarray | tf.Tensor | None = None,
cache: Optional[Dict[str, tf.Tensor]] = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[Tuple, TFFlaubertWithLMHeadModelOutput]:
transformer_outputs = self.transformer(
input_ids=input_ids,
attention_mask=attention_mask,
langs=langs,
token_type_ids=token_type_ids,
position_ids=position_ids,
lengths=lengths,
cache=cache,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
output = transformer_outputs[0]
outputs = self.pred_layer(output)
if not return_dict:
return (outputs,) + transformer_outputs[1:]
return TFFlaubertWithLMHeadModelOutput(
logits=outputs, hidden_states=transformer_outputs.hidden_states, attentions=transformer_outputs.attentions
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
if getattr(self, "pred_layer", None) is not None:
with tf.name_scope(self.pred_layer.name):
self.pred_layer.build(None)
@add_start_docstrings(
"""
Flaubert Model with a sequence classification/regression head on top (a linear layer on top of the pooled output)
e.g. for GLUE tasks.
""",
FLAUBERT_START_DOCSTRING,
)
# Copied from transformers.models.xlm.modeling_tf_xlm.TFXLMForSequenceClassification with XLM_INPUTS->FLAUBERT_INPUTS,XLM->Flaubert
class TFFlaubertForSequenceClassification(TFFlaubertPreTrainedModel, TFSequenceClassificationLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.transformer = TFFlaubertMainLayer(config, name="transformer")
self.sequence_summary = TFSequenceSummary(config, initializer_range=config.init_std, name="sequence_summary")
@unpack_inputs
@add_start_docstrings_to_model_forward(FLAUBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFSequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
langs: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
lengths: np.ndarray | tf.Tensor | None = None,
cache: Optional[Dict[str, tf.Tensor]] = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
training: bool = False,
) -> Union[TFSequenceClassifierOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
transformer_outputs = self.transformer(
input_ids=input_ids,
attention_mask=attention_mask,
langs=langs,
token_type_ids=token_type_ids,
position_ids=position_ids,
lengths=lengths,
cache=cache,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
output = transformer_outputs[0]
logits = self.sequence_summary(output)
loss = None if labels is None else self.hf_compute_loss(labels, logits)
if not return_dict:
output = (logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFSequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
if getattr(self, "sequence_summary", None) is not None:
with tf.name_scope(self.sequence_summary.name):
self.sequence_summary.build(None)
@add_start_docstrings(
"""
Flaubert Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear
layer on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
FLAUBERT_START_DOCSTRING,
)
# Copied from transformers.models.xlm.modeling_tf_xlm.TFXLMForQuestionAnsweringSimple with XLM_INPUTS->FLAUBERT_INPUTS,XLM->Flaubert
class TFFlaubertForQuestionAnsweringSimple(TFFlaubertPreTrainedModel, TFQuestionAnsweringLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFFlaubertMainLayer(config, name="transformer")
self.qa_outputs = tf.keras.layers.Dense(
config.num_labels, kernel_initializer=get_initializer(config.init_std), name="qa_outputs"
)
self.config = config
@unpack_inputs
@add_start_docstrings_to_model_forward(FLAUBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFQuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
langs: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
lengths: np.ndarray | tf.Tensor | None = None,
cache: Optional[Dict[str, tf.Tensor]] = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
start_positions: np.ndarray | tf.Tensor | None = None,
end_positions: np.ndarray | tf.Tensor | None = None,
training: bool = False,
) -> Union[TFQuestionAnsweringModelOutput, Tuple[tf.Tensor]]:
r"""
start_positions (`tf.Tensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`tf.Tensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
"""
transformer_outputs = self.transformer(
input_ids=input_ids,
attention_mask=attention_mask,
langs=langs,
token_type_ids=token_type_ids,
position_ids=position_ids,
lengths=lengths,
cache=cache,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = transformer_outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = tf.split(logits, 2, axis=-1)
start_logits = tf.squeeze(start_logits, axis=-1)
end_logits = tf.squeeze(end_logits, axis=-1)
loss = None
if start_positions is not None and end_positions is not None:
labels = {"start_position": start_positions}
labels["end_position"] = end_positions
loss = self.hf_compute_loss(labels, (start_logits, end_logits))
if not return_dict:
output = (start_logits, end_logits) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFQuestionAnsweringModelOutput(
loss=loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
if getattr(self, "qa_outputs", None) is not None:
with tf.name_scope(self.qa_outputs.name):
self.qa_outputs.build([None, None, self.config.hidden_size])
@add_start_docstrings(
"""
Flaubert Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
FLAUBERT_START_DOCSTRING,
)
# Copied from transformers.models.xlm.modeling_tf_xlm.TFXLMForTokenClassification with XLM_INPUTS->FLAUBERT_INPUTS,XLM->Flaubert
class TFFlaubertForTokenClassification(TFFlaubertPreTrainedModel, TFTokenClassificationLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.transformer = TFFlaubertMainLayer(config, name="transformer")
self.dropout = tf.keras.layers.Dropout(config.dropout)
self.classifier = tf.keras.layers.Dense(
config.num_labels, kernel_initializer=get_initializer(config.init_std), name="classifier"
)
self.config = config
@unpack_inputs
@add_start_docstrings_to_model_forward(FLAUBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFTokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
langs: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
lengths: np.ndarray | tf.Tensor | None = None,
cache: Optional[Dict[str, tf.Tensor]] = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
training: bool = False,
) -> Union[TFTokenClassifierOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
transformer_outputs = self.transformer(
input_ids=input_ids,
attention_mask=attention_mask,
langs=langs,
token_type_ids=token_type_ids,
position_ids=position_ids,
lengths=lengths,
cache=cache,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = transformer_outputs[0]
sequence_output = self.dropout(sequence_output, training=training)
logits = self.classifier(sequence_output)
loss = None if labels is None else self.hf_compute_loss(labels, logits)
if not return_dict:
output = (logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFTokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
if getattr(self, "classifier", None) is not None:
with tf.name_scope(self.classifier.name):
self.classifier.build([None, None, self.config.hidden_size])
@add_start_docstrings(
"""
Flaubert Model with a multiple choice classification head on top (a linear layer on top of the pooled output and a
softmax) e.g. for RocStories/SWAG tasks.
""",
FLAUBERT_START_DOCSTRING,
)
# Copied from transformers.models.xlm.modeling_tf_xlm.TFXLMForMultipleChoice with XLM_INPUTS->FLAUBERT_INPUTS,XLM->Flaubert
class TFFlaubertForMultipleChoice(TFFlaubertPreTrainedModel, TFMultipleChoiceLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFFlaubertMainLayer(config, name="transformer")
self.sequence_summary = TFSequenceSummary(config, initializer_range=config.init_std, name="sequence_summary")
self.logits_proj = tf.keras.layers.Dense(
1, kernel_initializer=get_initializer(config.initializer_range), name="logits_proj"
)
self.config = config
@property
def dummy_inputs(self):
"""
Dummy inputs to build the network.
Returns:
tf.Tensor with dummy inputs
"""
# Sometimes Flaubert has language embeddings so don't forget to build them as well if needed
if self.config.use_lang_emb and self.config.n_langs > 1:
return {
"input_ids": tf.constant(MULTIPLE_CHOICE_DUMMY_INPUTS, dtype=tf.int32),
"langs": tf.constant(MULTIPLE_CHOICE_DUMMY_INPUTS, dtype=tf.int32),
}
else:
return {
"input_ids": tf.constant(MULTIPLE_CHOICE_DUMMY_INPUTS, dtype=tf.int32),
}
@unpack_inputs
@add_start_docstrings_to_model_forward(
FLAUBERT_INPUTS_DOCSTRING.format("batch_size, num_choices, sequence_length")
)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFMultipleChoiceModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
langs: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
lengths: np.ndarray | tf.Tensor | None = None,
cache: Optional[Dict[str, tf.Tensor]] = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
training: bool = False,
) -> Union[TFMultipleChoiceModelOutput, Tuple[tf.Tensor]]:
if input_ids is not None:
num_choices = shape_list(input_ids)[1]
seq_length = shape_list(input_ids)[2]
else:
num_choices = shape_list(inputs_embeds)[1]
seq_length = shape_list(inputs_embeds)[2]
flat_input_ids = tf.reshape(input_ids, (-1, seq_length)) if input_ids is not None else None
flat_attention_mask = tf.reshape(attention_mask, (-1, seq_length)) if attention_mask is not None else None
flat_token_type_ids = tf.reshape(token_type_ids, (-1, seq_length)) if token_type_ids is not None else None
flat_position_ids = tf.reshape(position_ids, (-1, seq_length)) if position_ids is not None else None
flat_langs = tf.reshape(langs, (-1, seq_length)) if langs is not None else None
flat_inputs_embeds = (
tf.reshape(inputs_embeds, (-1, seq_length, shape_list(inputs_embeds)[3]))
if inputs_embeds is not None
else None
)
if lengths is not None:
logger.warning(
"The `lengths` parameter cannot be used with the Flaubert multiple choice models. Please use the "
"attention mask instead.",
)
lengths = None
transformer_outputs = self.transformer(
flat_input_ids,
flat_attention_mask,
flat_langs,
flat_token_type_ids,
flat_position_ids,
lengths,
cache,
head_mask,
flat_inputs_embeds,
output_attentions,
output_hidden_states,
return_dict=return_dict,
training=training,
)
output = transformer_outputs[0]
logits = self.sequence_summary(output)
logits = self.logits_proj(logits)
reshaped_logits = tf.reshape(logits, (-1, num_choices))
loss = None if labels is None else self.hf_compute_loss(labels, reshaped_logits)
if not return_dict:
output = (reshaped_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFMultipleChoiceModelOutput(
loss=loss,
logits=reshaped_logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
if getattr(self, "sequence_summary", None) is not None:
with tf.name_scope(self.sequence_summary.name):
self.sequence_summary.build(None)
if getattr(self, "logits_proj", None) is not None:
with tf.name_scope(self.logits_proj.name):
self.logits_proj.build([None, None, self.config.num_labels])
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/roc_bert/__init__.py | # Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_tokenizers_available, is_torch_available
_import_structure = {
"configuration_roc_bert": ["ROC_BERT_PRETRAINED_CONFIG_ARCHIVE_MAP", "RoCBertConfig"],
"tokenization_roc_bert": ["RoCBertTokenizer"],
}
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
pass
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_roc_bert"] = [
"ROC_BERT_PRETRAINED_MODEL_ARCHIVE_LIST",
"RoCBertForCausalLM",
"RoCBertForMaskedLM",
"RoCBertForMultipleChoice",
"RoCBertForPreTraining",
"RoCBertForQuestionAnswering",
"RoCBertForSequenceClassification",
"RoCBertForTokenClassification",
"RoCBertLayer",
"RoCBertModel",
"RoCBertPreTrainedModel",
"load_tf_weights_in_roc_bert",
]
if TYPE_CHECKING:
from .configuration_roc_bert import ROC_BERT_PRETRAINED_CONFIG_ARCHIVE_MAP, RoCBertConfig
from .tokenization_roc_bert import RoCBertTokenizer
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
raise OptionalDependencyNotAvailable()
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_roc_bert import (
ROC_BERT_PRETRAINED_MODEL_ARCHIVE_LIST,
RoCBertForCausalLM,
RoCBertForMaskedLM,
RoCBertForMultipleChoice,
RoCBertForPreTraining,
RoCBertForQuestionAnswering,
RoCBertForSequenceClassification,
RoCBertForTokenClassification,
RoCBertLayer,
RoCBertModel,
RoCBertPreTrainedModel,
load_tf_weights_in_roc_bert,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/roc_bert/modeling_roc_bert.py | # coding=utf-8
# Copyright 2022 WeChatAI The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch RoCBert model."""
import math
import os
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
CausalLMOutputWithCrossAttentions,
MaskedLMOutput,
MultipleChoiceModelOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_roc_bert import RoCBertConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "weiweishi/roc-bert-base-zh"
_CONFIG_FOR_DOC = "RoCBertConfig"
# Base model docstring
_EXPECTED_OUTPUT_SHAPE = [1, 8, 768]
# Token Classification output
_CHECKPOINT_FOR_TOKEN_CLASSIFICATION = "ArthurZ/dummy-rocbert-ner"
_TOKEN_CLASS_EXPECTED_OUTPUT = ["S-EVENT", "S-FAC", "I-ORDINAL", "I-ORDINAL", "E-ORG", "E-LANGUAGE", "E-ORG", "E-ORG", "E-ORG", "E-ORG", "I-EVENT", "S-TIME", "S-TIME", "E-LANGUAGE", "S-TIME", "E-DATE", "I-ORDINAL", "E-QUANTITY", "E-LANGUAGE", "S-TIME", "B-ORDINAL", "S-PRODUCT", "E-LANGUAGE", "E-LANGUAGE", "E-ORG", "E-LOC", "S-TIME", "I-ORDINAL", "S-FAC", "O", "S-GPE", "I-EVENT", "S-GPE", "E-LANGUAGE", "E-ORG", "S-EVENT", "S-FAC", "S-FAC", "S-FAC", "E-ORG", "S-FAC", "E-ORG", "S-GPE"] # fmt: skip
_TOKEN_CLASS_EXPECTED_LOSS = 3.62
# SequenceClassification docstring
_CHECKPOINT_FOR_SEQUENCE_CLASSIFICATION = "ArthurZ/dummy-rocbert-seq"
_SEQ_CLASS_EXPECTED_OUTPUT = "'financial news'"
_SEQ_CLASS_EXPECTED_LOSS = 2.31
# QuestionAsnwering docstring
_CHECKPOINT_FOR_QA = "ArthurZ/dummy-rocbert-qa"
_QA_EXPECTED_OUTPUT = "''"
_QA_EXPECTED_LOSS = 3.75
_QA_TARGET_START_INDEX = 14
_QA_TARGET_END_INDEX = 15
# Maske language modeling
ROC_BERT_PRETRAINED_MODEL_ARCHIVE_LIST = [
"weiweishi/roc-bert-base-zh",
# See all RoCBert models at https://huggingface.co/models?filter=roc_bert
]
# Copied from transformers.models.bert.modeling_bert.load_tf_weights_in_bert with bert->roc_bert
def load_tf_weights_in_roc_bert(model, config, tf_checkpoint_path):
"""Load tf checkpoints in a pytorch model."""
try:
import re
import numpy as np
import tensorflow as tf
except ImportError:
logger.error(
"Loading a TensorFlow model in PyTorch, requires TensorFlow to be installed. Please see "
"https://www.tensorflow.org/install/ for installation instructions."
)
raise
tf_path = os.path.abspath(tf_checkpoint_path)
logger.info(f"Converting TensorFlow checkpoint from {tf_path}")
# Load weights from TF model
init_vars = tf.train.list_variables(tf_path)
names = []
arrays = []
for name, shape in init_vars:
logger.info(f"Loading TF weight {name} with shape {shape}")
array = tf.train.load_variable(tf_path, name)
names.append(name)
arrays.append(array)
for name, array in zip(names, arrays):
name = name.split("/")
# adam_v and adam_m are variables used in AdamWeightDecayOptimizer to calculated m and v
# which are not required for using pretrained model
if any(
n in ["adam_v", "adam_m", "AdamWeightDecayOptimizer", "AdamWeightDecayOptimizer_1", "global_step"]
for n in name
):
logger.info(f"Skipping {'/'.join(name)}")
continue
pointer = model
for m_name in name:
if re.fullmatch(r"[A-Za-z]+_\d+", m_name):
scope_names = re.split(r"_(\d+)", m_name)
else:
scope_names = [m_name]
if scope_names[0] == "kernel" or scope_names[0] == "gamma":
pointer = getattr(pointer, "weight")
elif scope_names[0] == "output_bias" or scope_names[0] == "beta":
pointer = getattr(pointer, "bias")
elif scope_names[0] == "output_weights":
pointer = getattr(pointer, "weight")
elif scope_names[0] == "squad":
pointer = getattr(pointer, "classifier")
else:
try:
pointer = getattr(pointer, scope_names[0])
except AttributeError:
logger.info(f"Skipping {'/'.join(name)}")
continue
if len(scope_names) >= 2:
num = int(scope_names[1])
pointer = pointer[num]
if m_name[-11:] == "_embeddings":
pointer = getattr(pointer, "weight")
elif m_name == "kernel":
array = np.transpose(array)
try:
if pointer.shape != array.shape:
raise ValueError(f"Pointer shape {pointer.shape} and array shape {array.shape} mismatched")
except ValueError as e:
e.args += (pointer.shape, array.shape)
raise
logger.info(f"Initialize PyTorch weight {name}")
pointer.data = torch.from_numpy(array)
return model
class RoCBertEmbeddings(nn.Module):
"""Construct the embeddings from word, position, shape, pronunciation and token_type embeddings."""
def __init__(self, config):
super().__init__()
self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id)
self.pronunciation_embed = nn.Embedding(
config.pronunciation_vocab_size, config.pronunciation_embed_dim, padding_idx=config.pad_token_id
)
self.shape_embed = nn.Embedding(
config.shape_vocab_size, config.shape_embed_dim, padding_idx=config.pad_token_id
)
self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.hidden_size)
self.token_type_embeddings = nn.Embedding(config.type_vocab_size, config.hidden_size)
self.enable_pronunciation = config.enable_pronunciation
self.enable_shape = config.enable_shape
if config.concat_input:
input_dim = config.hidden_size
if self.enable_pronunciation:
pronunciation_dim = config.pronunciation_embed_dim
input_dim += pronunciation_dim
if self.enable_shape:
shape_dim = config.shape_embed_dim
input_dim += shape_dim
self.map_inputs_layer = torch.nn.Linear(input_dim, config.hidden_size)
else:
self.map_inputs_layer = None
# self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
# any TensorFlow checkpoint file
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.register_buffer(
"position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)), persistent=False
)
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
self.register_buffer(
"token_type_ids",
torch.zeros(self.position_ids.size(), dtype=torch.long, device=self.position_ids.device),
persistent=False,
)
def forward(
self,
input_ids=None,
input_shape_ids=None,
input_pronunciation_ids=None,
token_type_ids=None,
position_ids=None,
inputs_embeds=None,
past_key_values_length=0,
):
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
seq_length = input_shape[1]
if position_ids is None:
position_ids = self.position_ids[:, past_key_values_length : seq_length + past_key_values_length]
# Setting the token_type_ids to the registered buffer in constructor where it is all zeros, which usually occurs
# when its auto-generated, registered buffer helps users when tracing the model without passing token_type_ids, solves
# issue #5664
if token_type_ids is None:
if hasattr(self, "token_type_ids"):
buffered_token_type_ids = self.token_type_ids[:, :seq_length]
buffered_token_type_ids_expanded = buffered_token_type_ids.expand(input_shape[0], seq_length)
token_type_ids = buffered_token_type_ids_expanded
else:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=self.position_ids.device)
if self.map_inputs_layer is None:
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
token_type_embeddings = self.token_type_embeddings(token_type_ids)
embeddings = inputs_embeds + token_type_embeddings
if self.position_embedding_type == "absolute":
position_embeddings = self.position_embeddings(position_ids)
embeddings += position_embeddings
embeddings = self.LayerNorm(embeddings)
embeddings = self.dropout(embeddings)
denominator = 1
embedding_in = torch.clone(embeddings)
if self.enable_shape and input_shape_ids is not None:
embedding_shape = self.shape_embed(input_shape_ids)
embedding_in += embedding_shape
denominator += 1
if self.enable_pronunciation and input_pronunciation_ids is not None:
embedding_pronunciation = self.pronunciation_embed(input_pronunciation_ids)
embedding_in += embedding_pronunciation
denominator += 1
embedding_in /= denominator
return embedding_in
else:
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids) # embedding_word
device = inputs_embeds.device
embedding_in = torch.clone(inputs_embeds)
if self.enable_shape:
if input_shape_ids is None:
input_shape_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
embedding_shape = self.shape_embed(input_shape_ids)
embedding_in = torch.cat((embedding_in, embedding_shape), -1)
if self.enable_pronunciation:
if input_pronunciation_ids is None:
input_pronunciation_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
embedding_pronunciation = self.pronunciation_embed(input_pronunciation_ids)
embedding_in = torch.cat((embedding_in, embedding_pronunciation), -1)
embedding_in = self.map_inputs_layer(embedding_in) # batch_size * seq_len * hidden_dim
token_type_embeddings = self.token_type_embeddings(token_type_ids)
embedding_in += token_type_embeddings
if self.position_embedding_type == "absolute":
position_embeddings = self.position_embeddings(position_ids)
embedding_in += position_embeddings
embedding_in = self.LayerNorm(embedding_in)
embedding_in = self.dropout(embedding_in)
return embedding_in
# Copied from transformers.models.bert.modeling_bert.BertSelfAttention with Bert->RoCBert
class RoCBertSelfAttention(nn.Module):
def __init__(self, config, position_embedding_type=None):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(config.hidden_size, self.all_head_size)
self.key = nn.Linear(config.hidden_size, self.all_head_size)
self.value = nn.Linear(config.hidden_size, self.all_head_size)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
self.position_embedding_type = position_embedding_type or getattr(
config, "position_embedding_type", "absolute"
)
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
self.max_position_embeddings = config.max_position_embeddings
self.distance_embedding = nn.Embedding(2 * config.max_position_embeddings - 1, self.attention_head_size)
self.is_decoder = config.is_decoder
def transpose_for_scores(self, x: torch.Tensor) -> torch.Tensor:
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
mixed_query_layer = self.query(hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_layer = past_key_value[0]
value_layer = past_key_value[1]
attention_mask = encoder_attention_mask
elif is_cross_attention:
key_layer = self.transpose_for_scores(self.key(encoder_hidden_states))
value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
key_layer = torch.cat([past_key_value[0], key_layer], dim=2)
value_layer = torch.cat([past_key_value[1], value_layer], dim=2)
else:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
use_cache = past_key_value is not None
if self.is_decoder:
# if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_layer, value_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
query_length, key_length = query_layer.shape[2], key_layer.shape[2]
if use_cache:
position_ids_l = torch.tensor(key_length - 1, dtype=torch.long, device=hidden_states.device).view(
-1, 1
)
else:
position_ids_l = torch.arange(query_length, dtype=torch.long, device=hidden_states.device).view(-1, 1)
position_ids_r = torch.arange(key_length, dtype=torch.long, device=hidden_states.device).view(1, -1)
distance = position_ids_l - position_ids_r
positional_embedding = self.distance_embedding(distance + self.max_position_embeddings - 1)
positional_embedding = positional_embedding.to(dtype=query_layer.dtype) # fp16 compatibility
if self.position_embedding_type == "relative_key":
relative_position_scores = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores
elif self.position_embedding_type == "relative_key_query":
relative_position_scores_query = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
relative_position_scores_key = torch.einsum("bhrd,lrd->bhlr", key_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores_query + relative_position_scores_key
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in RoCBertModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = nn.functional.softmax(attention_scores, dim=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
if self.is_decoder:
outputs = outputs + (past_key_value,)
return outputs
# Copied from transformers.models.bert.modeling_bert.BertSelfOutput with Bert->RoCBert
class RoCBertSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertAttention with Bert->RoCBert
class RoCBertAttention(nn.Module):
def __init__(self, config, position_embedding_type=None):
super().__init__()
self.self = RoCBertSelfAttention(config, position_embedding_type=position_embedding_type)
self.output = RoCBertSelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
self_outputs = self.self(
hidden_states,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
# Copied from transformers.models.bert.modeling_bert.BertIntermediate with Bert->RoCBert
class RoCBertIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertOutput with Bert->RoCBert
class RoCBertOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertLayer with Bert->RoCBert
class RoCBertLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = RoCBertAttention(config)
self.is_decoder = config.is_decoder
self.add_cross_attention = config.add_cross_attention
if self.add_cross_attention:
if not self.is_decoder:
raise ValueError(f"{self} should be used as a decoder model if cross attention is added")
self.crossattention = RoCBertAttention(config, position_embedding_type="absolute")
self.intermediate = RoCBertIntermediate(config)
self.output = RoCBertOutput(config)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
past_key_value=self_attn_past_key_value,
)
attention_output = self_attention_outputs[0]
# if decoder, the last output is tuple of self-attn cache
if self.is_decoder:
outputs = self_attention_outputs[1:-1]
present_key_value = self_attention_outputs[-1]
else:
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
cross_attn_present_key_value = None
if self.is_decoder and encoder_hidden_states is not None:
if not hasattr(self, "crossattention"):
raise ValueError(
f"If `encoder_hidden_states` are passed, {self} has to be instantiated with cross-attention layers"
" by setting `config.add_cross_attention=True`"
)
# cross_attn cached key/values tuple is at positions 3,4 of past_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
cross_attn_past_key_value,
output_attentions,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights
# add cross-attn cache to positions 3,4 of present_key_value tuple
cross_attn_present_key_value = cross_attention_outputs[-1]
present_key_value = present_key_value + cross_attn_present_key_value
layer_output = apply_chunking_to_forward(
self.feed_forward_chunk, self.chunk_size_feed_forward, self.seq_len_dim, attention_output
)
outputs = (layer_output,) + outputs
# if decoder, return the attn key/values as the last output
if self.is_decoder:
outputs = outputs + (present_key_value,)
return outputs
def feed_forward_chunk(self, attention_output):
intermediate_output = self.intermediate(attention_output)
layer_output = self.output(intermediate_output, attention_output)
return layer_output
# Copied from transformers.models.bert.modeling_bert.BertEncoder with Bert->RoCBert
class RoCBertEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layer = nn.ModuleList([RoCBertLayer(config) for _ in range(config.num_hidden_layers)])
self.gradient_checkpointing = False
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = False,
output_hidden_states: Optional[bool] = False,
return_dict: Optional[bool] = True,
) -> Union[Tuple[torch.Tensor], BaseModelOutputWithPastAndCrossAttentions]:
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning_once(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
next_decoder_cache = () if use_cache else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
past_key_value = past_key_values[i] if past_key_values is not None else None
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer_module.__call__,
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
else:
layer_outputs = layer_module(
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[-1],)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if self.config.add_cross_attention:
all_cross_attentions = all_cross_attentions + (layer_outputs[2],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
# Copied from transformers.models.bert.modeling_bert.BertPooler with Bert->RoCBert
class RoCBertPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
# Copied from transformers.models.bert.modeling_bert.BertPredictionHeadTransform with Bert->RoCBert
class RoCBertPredictionHeadTransform(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
if isinstance(config.hidden_act, str):
self.transform_act_fn = ACT2FN[config.hidden_act]
else:
self.transform_act_fn = config.hidden_act
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.transform_act_fn(hidden_states)
hidden_states = self.LayerNorm(hidden_states)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertLMPredictionHead with Bert->RoCBert
class RoCBertLMPredictionHead(nn.Module):
def __init__(self, config):
super().__init__()
self.transform = RoCBertPredictionHeadTransform(config)
# The output weights are the same as the input embeddings, but there is
# an output-only bias for each token.
self.decoder = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
self.bias = nn.Parameter(torch.zeros(config.vocab_size))
# Need a link between the two variables so that the bias is correctly resized with `resize_token_embeddings`
self.decoder.bias = self.bias
def forward(self, hidden_states):
hidden_states = self.transform(hidden_states)
hidden_states = self.decoder(hidden_states)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertOnlyMLMHead with Bert->RoCBert
class RoCBertOnlyMLMHead(nn.Module):
def __init__(self, config):
super().__init__()
self.predictions = RoCBertLMPredictionHead(config)
def forward(self, sequence_output: torch.Tensor) -> torch.Tensor:
prediction_scores = self.predictions(sequence_output)
return prediction_scores
# Copied from transformers.models.bert.modeling_bert.BertPreTrainedModel with Bert->RoCBert,bert->roc_bert
class RoCBertPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = RoCBertConfig
load_tf_weights = load_tf_weights_in_roc_bert
base_model_prefix = "roc_bert"
supports_gradient_checkpointing = True
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, nn.Linear):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
ROC_BERT_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) sub-class. Use
it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`RoCBertConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
ROC_BERT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
input_shape_ids (`torch.LongTensor` of shape `({0})`):
Indices of input sequence tokens in the shape vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input_shape_ids)
input_pronunciation_ids (`torch.LongTensor` of shape `({0})`):
Indices of input sequence tokens in the pronunciation vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input_pronunciation_ids)
attention_mask (`torch.FloatTensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
token_type_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert *input_ids* indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare RoCBert Model transformer outputting raw hidden-states without any specific head on top.",
ROC_BERT_START_DOCSTRING,
)
class RoCBertModel(RoCBertPreTrainedModel):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in [Attention is
all you need](https://arxiv.org/abs/1706.03762) by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit,
Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin.
To behave as an decoder the model needs to be initialized with the `is_decoder` argument of the configuration set
to `True`. To be used in a Seq2Seq model, the model needs to be initialized with both `is_decoder` argument and
`add_cross_attention` set to `True`; an `encoder_hidden_states` is then expected as an input to the forward pass.
"""
# Copied from transformers.models.bert.modeling_bert.BertModel.__init__ with Bert->RoCBert
def __init__(self, config, add_pooling_layer=True):
super().__init__(config)
self.config = config
self.embeddings = RoCBertEmbeddings(config)
self.encoder = RoCBertEncoder(config)
self.pooler = RoCBertPooler(config) if add_pooling_layer else None
# Initialize weights and apply final processing
self.post_init()
# Copied from transformers.models.bert.modeling_bert.BertModel.get_input_embeddings
def get_input_embeddings(self):
return self.embeddings.word_embeddings
# Copied from transformers.models.bert.modeling_bert.BertModel.set_input_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def get_pronunciation_embeddings(self):
return self.embeddings.pronunciation_embed
def set_pronunciation_embeddings(self, value):
self.embeddings.pronunciation_embed = value
def get_shape_embeddings(self):
return self.embeddings.shape_embed
def set_shape_embeddings(self, value):
self.embeddings.shape_embed = value
# Copied from transformers.models.bert.modeling_bert.BertModel._prune_heads
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(ROC_BERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithPoolingAndCrossAttentions,
config_class=_CONFIG_FOR_DOC,
expected_output=_EXPECTED_OUTPUT_SHAPE,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
input_shape_ids: Optional[torch.Tensor] = None,
input_pronunciation_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], BaseModelOutputWithPoolingAndCrossAttentions]:
r"""
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
past_key_values (`tuple(tuple(torch.FloatTensor))` of length `config.n_layers` with each tuple having 4 tensors of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if self.config.is_decoder:
use_cache = use_cache if use_cache is not None else self.config.use_cache
else:
use_cache = False
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
self.warn_if_padding_and_no_attention_mask(input_ids, attention_mask)
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
batch_size, seq_length = input_shape
device = input_ids.device if input_ids is not None else inputs_embeds.device
# past_key_values_length
past_key_values_length = past_key_values[0][0].shape[2] if past_key_values is not None else 0
if attention_mask is None:
attention_mask = torch.ones(((batch_size, seq_length + past_key_values_length)), device=device)
if token_type_ids is None:
if hasattr(self.embeddings, "token_type_ids"):
buffered_token_type_ids = self.embeddings.token_type_ids[:, :seq_length]
buffered_token_type_ids_expanded = buffered_token_type_ids.expand(batch_size, seq_length)
token_type_ids = buffered_token_type_ids_expanded
else:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape)
# If a 2D or 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.config.is_decoder and encoder_hidden_states is not None:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device)
encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(
input_ids=input_ids,
input_shape_ids=input_shape_ids,
input_pronunciation_ids=input_pronunciation_ids,
position_ids=position_ids,
token_type_ids=token_type_ids,
inputs_embeds=inputs_embeds,
past_key_values_length=past_key_values_length,
)
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output) if self.pooler is not None else None
if not return_dict:
return (sequence_output, pooled_output) + encoder_outputs[1:]
return BaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
@add_start_docstrings(
"""
RoCBert Model with contrastive loss and masked_lm_loss during the pretraining.
""",
ROC_BERT_START_DOCSTRING,
)
class RoCBertForPreTraining(RoCBertPreTrainedModel):
_tied_weights_keys = ["cls.predictions.decoder.weight", "cls.predictions.decoder.bias"]
def __init__(self, config):
super().__init__(config)
self.roc_bert = RoCBertModel(config)
self.cls = RoCBertOnlyMLMHead(config)
# Initialize weights and apply final processing
self.post_init()
# Copied from transformers.models.bert.modeling_bert.BertForPreTraining.get_output_embeddings
def get_output_embeddings(self):
return self.cls.predictions.decoder
# Copied from transformers.models.bert.modeling_bert.BertForPreTraining.set_output_embeddings
def set_output_embeddings(self, new_embeddings):
self.cls.predictions.decoder = new_embeddings
@add_start_docstrings_to_model_forward(ROC_BERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=MaskedLMOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
input_shape_ids: Optional[torch.Tensor] = None,
input_pronunciation_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
attack_input_ids: Optional[torch.Tensor] = None,
attack_input_shape_ids: Optional[torch.Tensor] = None,
attack_input_pronunciation_ids: Optional[torch.Tensor] = None,
attack_attention_mask: Optional[torch.Tensor] = None,
attack_token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels_input_ids: Optional[torch.Tensor] = None,
labels_input_shape_ids: Optional[torch.Tensor] = None,
labels_input_pronunciation_ids: Optional[torch.Tensor] = None,
labels_attention_mask: Optional[torch.Tensor] = None,
labels_token_type_ids: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
**kwargs,
) -> Union[Tuple[torch.Tensor], MaskedLMOutput]:
r"""
attack_input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
attack sample ids for computing the contrastive loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked),
the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
attack_input_shape_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
attack sample shape ids for computing the contrastive loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked),
the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
attack_input_pronunciation_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
attack sample pronunciation ids for computing the contrastive loss. Indices should be in `[-100, 0,
..., config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored
(masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
labels_input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
target ids for computing the contrastive loss and masked_lm_loss . Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked),
the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
labels_input_shape_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
target shape ids for computing the contrastive loss and masked_lm_loss . Indices should be in `[-100,
0, ..., config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored
(masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
labels_input_pronunciation_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
target pronunciation ids for computing the contrastive loss and masked_lm_loss . Indices should be in
`[-100, 0, ..., config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are
ignored (masked), the loss is only computed for the tokens with labels in `[0, ...,
config.vocab_size]`
kwargs (`Dict[str, any]`, optional, defaults to *{}*):
Used to hide legacy arguments that have been deprecated.
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, RoCBertForPreTraining
>>> import torch
>>> tokenizer = AutoTokenizer.from_pretrained("weiweishi/roc-bert-base-zh")
>>> model = RoCBertForPreTraining.from_pretrained("weiweishi/roc-bert-base-zh")
>>> inputs = tokenizer("你好，很高兴认识你", return_tensors="pt")
>>> attack_inputs = {}
>>> for key in list(inputs.keys()):
... attack_inputs[f"attack_{key}"] = inputs[key]
>>> label_inputs = {}
>>> for key in list(inputs.keys()):
... label_inputs[f"labels_{key}"] = inputs[key]
>>> inputs.update(label_inputs)
>>> inputs.update(attack_inputs)
>>> outputs = model(**inputs)
>>> logits = outputs.logits
>>> logits.shape
torch.Size([1, 11, 21128])
```
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.roc_bert(
input_ids,
input_shape_ids=input_shape_ids,
input_pronunciation_ids=input_pronunciation_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output, pooled_output = outputs[:2]
prediction_scores = self.cls(sequence_output)
loss = None
if labels_input_ids is not None:
loss_fct = CrossEntropyLoss() # -100 index = padding token
masked_lm_loss = loss_fct(prediction_scores.view(-1, self.config.vocab_size), labels_input_ids.view(-1))
if attack_input_ids is not None:
batch_size, _ = labels_input_ids.shape
device = labels_input_ids.device
target_inputs = torch.clone(labels_input_ids)
target_inputs[target_inputs == -100] = self.config.pad_token_id
labels_output = self.roc_bert(
target_inputs,
input_shape_ids=labels_input_shape_ids,
input_pronunciation_ids=labels_input_pronunciation_ids,
attention_mask=labels_attention_mask,
token_type_ids=labels_token_type_ids,
return_dict=return_dict,
)
attack_output = self.roc_bert(
attack_input_ids,
input_shape_ids=attack_input_shape_ids,
input_pronunciation_ids=attack_input_pronunciation_ids,
attention_mask=attack_attention_mask,
token_type_ids=attack_token_type_ids,
return_dict=return_dict,
)
labels_pooled_output = labels_output[1]
attack_pooled_output = attack_output[1]
pooled_output_norm = torch.nn.functional.normalize(pooled_output, dim=-1)
labels_pooled_output_norm = torch.nn.functional.normalize(labels_pooled_output, dim=-1)
attack_pooled_output_norm = torch.nn.functional.normalize(attack_pooled_output, dim=-1)
sim_matrix = torch.matmul(pooled_output_norm, attack_pooled_output_norm.T) # batch_size * hidden_dim
sim_matrix_target = torch.matmul(labels_pooled_output_norm, attack_pooled_output_norm.T)
batch_labels = torch.tensor(list(range(batch_size)), device=device)
contrastive_loss = (
loss_fct(100 * sim_matrix.view(batch_size, -1), batch_labels.view(-1))
+ loss_fct(100 * sim_matrix_target.view(batch_size, -1), batch_labels.view(-1))
) / 2
loss = contrastive_loss + masked_lm_loss
else:
loss = masked_lm_loss
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return MaskedLMOutput(
loss=loss,
logits=prediction_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings("""RoCBert Model with a `language modeling` head on top.""", ROC_BERT_START_DOCSTRING)
class RoCBertForMaskedLM(RoCBertPreTrainedModel):
_tied_weights_keys = ["cls.predictions.decoder.weight", "cls.predictions.decoder.bias"]
# Copied from transformers.models.bert.modeling_bert.BertForMaskedLM.__init__ with Bert->RoCBert,bert->roc_bert
def __init__(self, config):
super().__init__(config)
if config.is_decoder:
logger.warning(
"If you want to use `RoCBertForMaskedLM` make sure `config.is_decoder=False` for "
"bi-directional self-attention."
)
self.roc_bert = RoCBertModel(config, add_pooling_layer=False)
self.cls = RoCBertOnlyMLMHead(config)
# Initialize weights and apply final processing
self.post_init()
# Copied from transformers.models.bert.modeling_bert.BertForMaskedLM.get_output_embeddings
def get_output_embeddings(self):
return self.cls.predictions.decoder
# Copied from transformers.models.bert.modeling_bert.BertForMaskedLM.set_output_embeddings
def set_output_embeddings(self, new_embeddings):
self.cls.predictions.decoder = new_embeddings
@add_start_docstrings_to_model_forward(ROC_BERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
input_shape_ids: Optional[torch.Tensor] = None,
input_pronunciation_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], MaskedLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
Example:
```python
>>> from transformers import AutoTokenizer, RoCBertForMaskedLM
>>> import torch
>>> tokenizer = AutoTokenizer.from_pretrained("weiweishi/roc-bert-base-zh")
>>> model = RoCBertForMaskedLM.from_pretrained("weiweishi/roc-bert-base-zh")
>>> inputs = tokenizer("法国是首都[MASK].", return_tensors="pt")
>>> with torch.no_grad():
... logits = model(**inputs).logits
>>> # retrieve index of {mask}
>>> mask_token_index = (inputs.input_ids == tokenizer.mask_token_id)[0].nonzero(as_tuple=True)[0]
>>> predicted_token_id = logits[0, mask_token_index].argmax(axis=-1)
>>> tokenizer.decode(predicted_token_id)
'.'
```
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.roc_bert(
input_ids,
input_shape_ids=input_shape_ids,
input_pronunciation_ids=input_pronunciation_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
prediction_scores = self.cls(sequence_output)
masked_lm_loss = None
if labels is not None:
loss_fct = CrossEntropyLoss() # -100 index = padding token
masked_lm_loss = loss_fct(prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return MaskedLMOutput(
loss=masked_lm_loss,
logits=prediction_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def prepare_inputs_for_generation(
self, input_ids, input_shape_ids=None, input_pronunciation_ids=None, attention_mask=None, **model_kwargs
):
input_shape = input_ids.shape
effective_batch_size = input_shape[0]
# add a dummy token
if self.config.pad_token_id is None:
raise ValueError("The PAD token should be defined for generation")
attention_mask = torch.cat([attention_mask, attention_mask.new_zeros((attention_mask.shape[0], 1))], dim=-1)
dummy_token = torch.full(
(effective_batch_size, 1), self.config.pad_token_id, dtype=torch.long, device=input_ids.device
)
input_ids = torch.cat([input_ids, dummy_token], dim=1)
if input_shape_ids is not None:
input_shape_ids = torch.cat([input_shape_ids, dummy_token], dim=1)
if input_pronunciation_ids is not None:
input_pronunciation_ids = torch.cat([input_pronunciation_ids, dummy_token], dim=1)
return {
"input_ids": input_ids,
"input_shape_ids": input_shape_ids,
"input_pronunciation_ids": input_pronunciation_ids,
"attention_mask": attention_mask,
}
@add_start_docstrings(
"""RoCBert Model with a `language modeling` head on top for CLM fine-tuning.""", ROC_BERT_START_DOCSTRING
)
class RoCBertForCausalLM(RoCBertPreTrainedModel):
_tied_weights_keys = ["cls.predictions.decoder.weight", "cls.predictions.decoder.bias"]
# Copied from transformers.models.bert.modeling_bert.BertLMHeadModel.__init__ with BertLMHeadModel->RoCBertForCausalLM,Bert->RoCBert,bert->roc_bert
def __init__(self, config):
super().__init__(config)
if not config.is_decoder:
logger.warning("If you want to use `RoCRoCBertForCausalLM` as a standalone, add `is_decoder=True.`")
self.roc_bert = RoCBertModel(config, add_pooling_layer=False)
self.cls = RoCBertOnlyMLMHead(config)
# Initialize weights and apply final processing
self.post_init()
# Copied from transformers.models.bert.modeling_bert.BertLMHeadModel.get_output_embeddings
def get_output_embeddings(self):
return self.cls.predictions.decoder
# Copied from transformers.models.bert.modeling_bert.BertLMHeadModel.set_output_embeddings
def set_output_embeddings(self, new_embeddings):
self.cls.predictions.decoder = new_embeddings
@add_start_docstrings_to_model_forward(ROC_BERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=CausalLMOutputWithCrossAttentions, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
input_shape_ids: Optional[torch.Tensor] = None,
input_pronunciation_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
past_key_values: Optional[List[torch.Tensor]] = None,
labels: Optional[torch.Tensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], CausalLMOutputWithCrossAttentions]:
r"""
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of shape
`(batch_size, num_heads, sequence_length, embed_size_per_head)`) and 2 additional tensors of shape
`(batch_size, num_heads, encoder_sequence_length, embed_size_per_head)`. The two additional tensors are
only required when the model is used as a decoder in a Sequence to Sequence model.
Contains pre-computed hidden-states (key and values in the self-attention blocks and in the cross-attention
blocks) that can be used (see `past_key_values` input) to speed up sequential decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the left-to-right language modeling loss (next word prediction). Indices should be in
`[-100, 0, ..., config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are
ignored (masked), the loss is only computed for the tokens with labels n `[0, ..., config.vocab_size]`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, RoCBertForCausalLM, RoCBertConfig
>>> import torch
>>> tokenizer = AutoTokenizer.from_pretrained("weiweishi/roc-bert-base-zh")
>>> config = RoCBertConfig.from_pretrained("weiweishi/roc-bert-base-zh")
>>> config.is_decoder = True
>>> model = RoCBertForCausalLM.from_pretrained("weiweishi/roc-bert-base-zh", config=config)
>>> inputs = tokenizer("你好，很高兴认识你", return_tensors="pt")
>>> outputs = model(**inputs)
>>> prediction_logits = outputs.logits
```
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.roc_bert(
input_ids,
input_shape_ids=input_shape_ids,
input_pronunciation_ids=input_pronunciation_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
prediction_scores = self.cls(sequence_output)
lm_loss = None
if labels is not None:
# we are doing next-token prediction; shift prediction scores and input ids by one
shifted_prediction_scores = prediction_scores[:, :-1, :].contiguous()
labels = labels[:, 1:].contiguous()
loss_fct = CrossEntropyLoss()
lm_loss = loss_fct(shifted_prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((lm_loss,) + output) if lm_loss is not None else output
return CausalLMOutputWithCrossAttentions(
loss=lm_loss,
logits=prediction_scores,
past_key_values=outputs.past_key_values,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
def prepare_inputs_for_generation(
self,
input_ids,
input_shape_ids=None,
input_pronunciation_ids=None,
past_key_values=None,
attention_mask=None,
**model_kwargs,
):
input_shape = input_ids.shape
# if model is used as a decoder in encoder-decoder model, the decoder attention mask is created on the fly
if attention_mask is None:
attention_mask = input_ids.new_ones(input_shape)
# cut decoder_input_ids if past_key_values is used
if past_key_values is not None:
past_length = past_key_values[0][0].shape[2]
# Some generation methods already pass only the last input ID
if input_ids.shape[1] > past_length:
remove_prefix_length = past_length
else:
# Default to old behavior: keep only final ID
remove_prefix_length = input_ids.shape[1] - 1
input_ids = input_ids[:, remove_prefix_length:]
if input_shape_ids is not None:
input_shape_ids = input_shape_ids[:, -1:]
if input_pronunciation_ids is not None:
input_pronunciation_ids = input_pronunciation_ids[:, -1:]
return {
"input_ids": input_ids,
"input_shape_ids": input_shape_ids,
"input_pronunciation_ids": input_pronunciation_ids,
"attention_mask": attention_mask,
"past_key_values": past_key_values,
}
# Copied from transformers.models.bert.modeling_bert.BertLMHeadModel._reorder_cache
def _reorder_cache(self, past_key_values, beam_idx):
reordered_past = ()
for layer_past in past_key_values:
reordered_past += (
tuple(past_state.index_select(0, beam_idx.to(past_state.device)) for past_state in layer_past),
)
return reordered_past
@add_start_docstrings(
"""RoCBert Model transformer with a sequence classification/regression head on top (a linear layer on top of
the pooled output) e.g. for GLUE tasks.""",
ROC_BERT_START_DOCSTRING,
)
class RoCBertForSequenceClassification(RoCBertPreTrainedModel):
# Copied from transformers.models.bert.modeling_bert.BertForSequenceClassification.__init__ with Bert->RoCBert,bert->roc_bert
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.config = config
self.roc_bert = RoCBertModel(config)
classifier_dropout = (
config.classifier_dropout if config.classifier_dropout is not None else config.hidden_dropout_prob
)
self.dropout = nn.Dropout(classifier_dropout)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(ROC_BERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_SEQUENCE_CLASSIFICATION,
output_type=SequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
expected_output=_SEQ_CLASS_EXPECTED_OUTPUT,
expected_loss=_SEQ_CLASS_EXPECTED_LOSS,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
input_shape_ids: Optional[torch.Tensor] = None,
input_pronunciation_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], SequenceClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.roc_bert(
input_ids,
input_shape_ids=input_shape_ids,
input_pronunciation_ids=input_pronunciation_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""RoCBert Model with a multiple choice classification head on top (a linear layer on top of
the pooled output and a softmax) e.g. for RocStories/SWAG tasks.""",
ROC_BERT_START_DOCSTRING,
)
class RoCBertForMultipleChoice(RoCBertPreTrainedModel):
# Copied from transformers.models.bert.modeling_bert.BertForMultipleChoice.__init__ with Bert->RoCBert,bert->roc_bert
def __init__(self, config):
super().__init__(config)
self.roc_bert = RoCBertModel(config)
classifier_dropout = (
config.classifier_dropout if config.classifier_dropout is not None else config.hidden_dropout_prob
)
self.dropout = nn.Dropout(classifier_dropout)
self.classifier = nn.Linear(config.hidden_size, 1)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(
ROC_BERT_INPUTS_DOCSTRING.format("batch_size, num_choices, sequence_length")
)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=MultipleChoiceModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
input_shape_ids: Optional[torch.Tensor] = None,
input_pronunciation_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], MultipleChoiceModelOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the multiple choice classification loss. Indices should be in `[0, ...,
num_choices-1]` where `num_choices` is the size of the second dimension of the input tensors. (See
`input_ids` above)
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
num_choices = input_ids.shape[1] if input_ids is not None else inputs_embeds.shape[1]
input_ids = input_ids.view(-1, input_ids.size(-1)) if input_ids is not None else None
input_shape_ids = input_shape_ids.view(-1, input_shape_ids.size(-1)) if input_shape_ids is not None else None
input_pronunciation_ids = (
input_pronunciation_ids.view(-1, input_pronunciation_ids.size(-1))
if input_pronunciation_ids is not None
else None
)
attention_mask = attention_mask.view(-1, attention_mask.size(-1)) if attention_mask is not None else None
token_type_ids = token_type_ids.view(-1, token_type_ids.size(-1)) if token_type_ids is not None else None
position_ids = position_ids.view(-1, position_ids.size(-1)) if position_ids is not None else None
inputs_embeds = (
inputs_embeds.view(-1, inputs_embeds.size(-2), inputs_embeds.size(-1))
if inputs_embeds is not None
else None
)
outputs = self.roc_bert(
input_ids,
input_shape_ids=input_shape_ids,
input_pronunciation_ids=input_pronunciation_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
reshaped_logits = logits.view(-1, num_choices)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(reshaped_logits, labels)
if not return_dict:
output = (reshaped_logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return MultipleChoiceModelOutput(
loss=loss,
logits=reshaped_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""RoCBert Model with a token classification head on top (a linear layer on top of
the hidden-states output) e.g. for Named-Entity-Recognition (NER) tasks.""",
ROC_BERT_START_DOCSTRING,
)
class RoCBertForTokenClassification(RoCBertPreTrainedModel):
# Copied from transformers.models.bert.modeling_bert.BertForTokenClassification.__init__ with Bert->RoCBert,bert->roc_bert
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.roc_bert = RoCBertModel(config, add_pooling_layer=False)
classifier_dropout = (
config.classifier_dropout if config.classifier_dropout is not None else config.hidden_dropout_prob
)
self.dropout = nn.Dropout(classifier_dropout)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(ROC_BERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_TOKEN_CLASSIFICATION,
output_type=TokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
expected_output=_TOKEN_CLASS_EXPECTED_OUTPUT,
expected_loss=_TOKEN_CLASS_EXPECTED_LOSS,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
input_shape_ids: Optional[torch.Tensor] = None,
input_pronunciation_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, TokenClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.roc_bert(
input_ids,
input_shape_ids=input_shape_ids,
input_pronunciation_ids=input_pronunciation_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output)
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""RoCBert Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear
layers on top of the hidden-states output to compute `span start logits` and `span end logits`).""",
ROC_BERT_START_DOCSTRING,
)
class RoCBertForQuestionAnswering(RoCBertPreTrainedModel):
# Copied from transformers.models.bert.modeling_bert.BertForQuestionAnswering.__init__ with Bert->RoCBert,bert->roc_bert
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.roc_bert = RoCBertModel(config, add_pooling_layer=False)
self.qa_outputs = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(ROC_BERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_QA,
output_type=QuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
qa_target_start_index=_QA_TARGET_START_INDEX,
qa_target_end_index=_QA_TARGET_END_INDEX,
expected_output=_QA_EXPECTED_OUTPUT,
expected_loss=_QA_EXPECTED_LOSS,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
input_shape_ids: Optional[torch.Tensor] = None,
input_pronunciation_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
start_positions: Optional[torch.Tensor] = None,
end_positions: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], QuestionAnsweringModelOutput]:
r"""
start_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.roc_bert(
input_ids,
input_shape_ids=input_shape_ids,
input_pronunciation_ids=input_pronunciation_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = logits.split(1, dim=-1)
start_logits = start_logits.squeeze(-1)
end_logits = end_logits.squeeze(-1)
total_loss = None
if start_positions is not None and end_positions is not None:
# If we are on multi-GPU, split add a dimension
if len(start_positions.size()) > 1:
start_positions = start_positions.squeeze(-1)
if len(end_positions.size()) > 1:
end_positions = end_positions.squeeze(-1)
# sometimes the start/end positions are outside our model inputs, we ignore these terms
ignored_index = start_logits.size(1)
start_positions = start_positions.clamp(0, ignored_index)
end_positions = end_positions.clamp(0, ignored_index)
loss_fct = CrossEntropyLoss(ignore_index=ignored_index)
start_loss = loss_fct(start_logits, start_positions)
end_loss = loss_fct(end_logits, end_positions)
total_loss = (start_loss + end_loss) / 2
if not return_dict:
output = (start_logits, end_logits) + outputs[2:]
return ((total_loss,) + output) if total_loss is not None else output
return QuestionAnsweringModelOutput(
loss=total_loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/roc_bert/configuration_roc_bert.py | # coding=utf-8
# Copyright 2022 WeChatAI and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" RoCBert model configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
ROC_BERT_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"weiweishi/roc-bert-base-zh": "https://huggingface.co/weiweishi/roc-bert-base-zh/resolve/main/config.json",
}
class RoCBertConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`RoCBertModel`]. It is used to instantiate a
RoCBert model according to the specified arguments, defining the model architecture. Instantiating a configuration
with the defaults will yield a similar configuration to that of the RoCBert
[weiweishi/roc-bert-base-zh](https://huggingface.co/weiweishi/roc-bert-base-zh) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 30522):
Vocabulary size of the RoCBert model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`RoCBertModel`].
hidden_size (`int`, *optional*, defaults to 768):
Dimension of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimension of the "intermediate" (i.e., feed-forward) layer in the Transformer encoder.
hidden_act (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"selu"` and `"gelu_new"` are supported.
hidden_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout probabilitiy for all fully connected layers in the embeddings, encoder, and pooler.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention probabilities.
max_position_embeddings (`int`, *optional*, defaults to 512):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
type_vocab_size (`int`, *optional*, defaults to 2):
The vocabulary size of the `token_type_ids` passed when calling [`RoCBertModel`].
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
is_decoder (`bool`, *optional*, defaults to `False`):
Whether the model is used as a decoder or not. If `False`, the model is used as an encoder.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models). Only
relevant if `config.is_decoder=True`.
position_embedding_type (`str`, *optional*, defaults to `"absolute"`):
Type of position embedding. Choose one of `"absolute"`, `"relative_key"`, `"relative_key_query"`. For
positional embeddings use `"absolute"`. For more information on `"relative_key"`, please refer to
[Self-Attention with Relative Position Representations (Shaw et al.)](https://arxiv.org/abs/1803.02155).
For more information on `"relative_key_query"`, please refer to *Method 4* in [Improve Transformer Models
with Better Relative Position Embeddings (Huang et al.)](https://arxiv.org/abs/2009.13658).
classifier_dropout (`float`, *optional*):
The dropout ratio for the classification head.
enable_pronunciation (`bool`, *optional*, defaults to `True`):
Whether or not the model use pronunciation embed when training.
enable_shape (`bool`, *optional*, defaults to `True`):
Whether or not the model use shape embed when training.
pronunciation_embed_dim (`int`, *optional*, defaults to 768):
Dimension of the pronunciation_embed.
pronunciation_vocab_size (`int`, *optional*, defaults to 910):
Pronunciation Vocabulary size of the RoCBert model. Defines the number of different tokens that can be
represented by the `input_pronunciation_ids` passed when calling [`RoCBertModel`].
shape_embed_dim (`int`, *optional*, defaults to 512):
Dimension of the shape_embed.
shape_vocab_size (`int`, *optional*, defaults to 24858):
Shape Vocabulary size of the RoCBert model. Defines the number of different tokens that can be represented
by the `input_shape_ids` passed when calling [`RoCBertModel`].
concat_input (`bool`, *optional*, defaults to `True`):
Defines the way of merging the shape_embed, pronunciation_embed and word_embed, if the value is true,
output_embed = torch.cat((word_embed, shape_embed, pronunciation_embed), -1), else output_embed =
(word_embed + shape_embed + pronunciation_embed) / 3
Example:
```python
>>> from transformers import RoCBertModel, RoCBertConfig
>>> # Initializing a RoCBert weiweishi/roc-bert-base-zh style configuration
>>> configuration = RoCBertConfig()
>>> # Initializing a model from the weiweishi/roc-bert-base-zh style configuration
>>> model = RoCBertModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "roc_bert"
def __init__(
self,
vocab_size=30522,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
intermediate_size=3072,
hidden_act="gelu",
hidden_dropout_prob=0.1,
attention_probs_dropout_prob=0.1,
max_position_embeddings=512,
type_vocab_size=2,
initializer_range=0.02,
layer_norm_eps=1e-12,
use_cache=True,
pad_token_id=0,
position_embedding_type="absolute",
classifier_dropout=None,
enable_pronunciation=True,
enable_shape=True,
pronunciation_embed_dim=768,
pronunciation_vocab_size=910,
shape_embed_dim=512,
shape_vocab_size=24858,
concat_input=True,
**kwargs,
):
self.vocab_size = vocab_size
self.max_position_embeddings = max_position_embeddings
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.intermediate_size = intermediate_size
self.hidden_act = hidden_act
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.initializer_range = initializer_range
self.type_vocab_size = type_vocab_size
self.layer_norm_eps = layer_norm_eps
self.use_cache = use_cache
self.enable_pronunciation = enable_pronunciation
self.enable_shape = enable_shape
self.pronunciation_embed_dim = pronunciation_embed_dim
self.pronunciation_vocab_size = pronunciation_vocab_size
self.shape_embed_dim = shape_embed_dim
self.shape_vocab_size = shape_vocab_size
self.concat_input = concat_input
self.position_embedding_type = position_embedding_type
self.classifier_dropout = classifier_dropout
super().__init__(pad_token_id=pad_token_id, **kwargs)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/roc_bert/tokenization_roc_bert.py | # coding=utf-8
# Copyright 2022 WeChatAI and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes for RoCBert."""
import collections
import itertools
import json
import os
import unicodedata
from typing import Dict, List, Optional, Tuple, Union
from ...tokenization_utils import PreTrainedTokenizer, _is_control, _is_punctuation, _is_whitespace
from ...tokenization_utils_base import (
ENCODE_KWARGS_DOCSTRING,
ENCODE_PLUS_ADDITIONAL_KWARGS_DOCSTRING,
BatchEncoding,
EncodedInput,
EncodedInputPair,
PaddingStrategy,
PreTokenizedInput,
PreTokenizedInputPair,
TensorType,
TextInput,
TextInputPair,
TruncationStrategy,
)
from ...utils import add_end_docstrings, logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {
"vocab_file": "vocab.txt",
"word_shape_file": "word_shape.json",
"word_pronunciation_file": "word_pronunciation.json",
}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {
"weiweishi/roc-bert-base-zh": "https://huggingface.co/weiweishi/roc-bert-base-zh/resolve/main/vocab.txt"
},
"word_shape_file": {
"weiweishi/roc-bert-base-zh": "https://huggingface.co/weiweishi/roc-bert-base-zh/resolve/main/word_shape.json"
},
"word_pronunciation_file": {
"weiweishi/roc-bert-base-zh": (
"https://huggingface.co/weiweishi/roc-bert-base-zh/resolve/main/word_pronunciation.json"
)
},
}
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {
"weiweishi/roc-bert-base-zh": 512,
}
PRETRAINED_INIT_CONFIGURATION = {
"weiweishi/roc-bert-base-zh": {"do_lower_case": True},
}
# Copied from transformers.models.bert.tokenization_bert.load_vocab
def load_vocab(vocab_file):
"""Loads a vocabulary file into a dictionary."""
vocab = collections.OrderedDict()
with open(vocab_file, "r", encoding="utf-8") as reader:
tokens = reader.readlines()
for index, token in enumerate(tokens):
token = token.rstrip("\n")
vocab[token] = index
return vocab
# Copied from transformers.models.bert.tokenization_bert.whitespace_tokenize
def whitespace_tokenize(text):
"""Runs basic whitespace cleaning and splitting on a piece of text."""
text = text.strip()
if not text:
return []
tokens = text.split()
return tokens
class RoCBertTokenizer(PreTrainedTokenizer):
r"""
Args:
Construct a RoCBert tokenizer. Based on WordPiece. This tokenizer inherits from [`PreTrainedTokenizer`] which
contains most of the main methods. Users should refer to this superclass for more information regarding those
methods.
vocab_file (`str`):
File containing the vocabulary.
word_shape_file (`str`):
File containing the word => shape info.
word_pronunciation_file (`str`):
File containing the word => pronunciation info.
do_lower_case (`bool`, *optional*, defaults to `True`):
Whether or not to lowercase the input when tokenizing.
do_basic_tokenize (`bool`, *optional*, defaults to `True`):
Whether or not to do basic tokenization before WordPiece.
never_split (`Iterable`, *optional*):
Collection of tokens which will never be split during tokenization. Only has an effect when
`do_basic_tokenize=True`
unk_token (`str`, *optional*, defaults to `"[UNK]"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
sep_token (`str`, *optional*, defaults to `"[SEP]"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
pad_token (`str`, *optional*, defaults to `"[PAD]"`):
The token used for padding, for example when batching sequences of different lengths.
cls_token (`str`, *optional*, defaults to `"[CLS]"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
mask_token (`str`, *optional*, defaults to `"[MASK]"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
tokenize_chinese_chars (`bool`, *optional*, defaults to `True`):
Whether or not to tokenize Chinese characters. This should likely be deactivated for Japanese (see this
[issue](https://github.com/huggingface/transformers/issues/328)).
strip_accents (`bool`, *optional*):
Whether or not to strip all accents. If this option is not specified, then it will be determined by the
value for `lowercase` (as in the original BERT).
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
pretrained_init_configuration = PRETRAINED_INIT_CONFIGURATION
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
def __init__(
self,
vocab_file,
word_shape_file,
word_pronunciation_file,
do_lower_case=True,
do_basic_tokenize=True,
never_split=None,
unk_token="[UNK]",
sep_token="[SEP]",
pad_token="[PAD]",
cls_token="[CLS]",
mask_token="[MASK]",
tokenize_chinese_chars=True,
strip_accents=None,
**kwargs,
):
for cur_file in [vocab_file, word_shape_file, word_pronunciation_file]:
if cur_file is None or not os.path.isfile(cur_file):
raise ValueError(
f"Can't find a vocabulary file at path '{vocab_file}'. To load the vocabulary from a Google "
"pretrained model use `tokenizer = RoCBertTokenizer.from_pretrained(PRETRAINED_MODEL_NAME)`"
)
self.vocab = load_vocab(vocab_file)
with open(word_shape_file, "r", encoding="utf8") as in_file:
self.word_shape = json.load(in_file)
with open(word_pronunciation_file, "r", encoding="utf8") as in_file:
self.word_pronunciation = json.load(in_file)
self.ids_to_tokens = collections.OrderedDict([(ids, tok) for tok, ids in self.vocab.items()])
self.do_basic_tokenize = do_basic_tokenize
if do_basic_tokenize:
self.basic_tokenizer = RoCBertBasicTokenizer(
do_lower_case=do_lower_case,
never_split=never_split,
tokenize_chinese_chars=tokenize_chinese_chars,
strip_accents=strip_accents,
)
self.wordpiece_tokenizer = RoCBertWordpieceTokenizer(vocab=self.vocab, unk_token=str(unk_token))
super().__init__(
do_lower_case=do_lower_case,
do_basic_tokenize=do_basic_tokenize,
never_split=never_split,
unk_token=unk_token,
sep_token=sep_token,
pad_token=pad_token,
cls_token=cls_token,
mask_token=mask_token,
tokenize_chinese_chars=tokenize_chinese_chars,
strip_accents=strip_accents,
**kwargs,
)
@property
def do_lower_case(self):
return self.basic_tokenizer.do_lower_case
@property
def vocab_size(self):
return len(self.vocab)
# Copied from transformers.models.bert.tokenization_bert.BertTokenizer.get_vocab
def get_vocab(self):
return dict(self.vocab, **self.added_tokens_encoder)
# Copied from transformers.models.bert.tokenization_bert.BertTokenizer._tokenize
def _tokenize(self, text, split_special_tokens=False):
split_tokens = []
if self.do_basic_tokenize:
for token in self.basic_tokenizer.tokenize(
text, never_split=self.all_special_tokens if not split_special_tokens else None
):
# If the token is part of the never_split set
if token in self.basic_tokenizer.never_split:
split_tokens.append(token)
else:
split_tokens += self.wordpiece_tokenizer.tokenize(token)
else:
split_tokens = self.wordpiece_tokenizer.tokenize(text)
return split_tokens
def _encode_plus(
self,
text: Union[TextInput, PreTokenizedInput, EncodedInput],
text_pair: Optional[Union[TextInput, PreTokenizedInput, EncodedInput]] = None,
add_special_tokens: bool = True,
padding_strategy: PaddingStrategy = PaddingStrategy.DO_NOT_PAD,
truncation_strategy: TruncationStrategy = TruncationStrategy.DO_NOT_TRUNCATE,
max_length: Optional[int] = None,
stride: int = 0,
is_split_into_words: bool = False,
pad_to_multiple_of: Optional[int] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
return_token_type_ids: Optional[bool] = None,
return_attention_mask: Optional[bool] = None,
return_overflowing_tokens: bool = False,
return_special_tokens_mask: bool = False,
return_offsets_mapping: bool = False,
return_length: bool = False,
verbose: bool = True,
**kwargs,
) -> BatchEncoding:
def get_input_ids(text):
if isinstance(text, str):
tokens = self.tokenize(text, **kwargs)
tokens_ids = self.convert_tokens_to_ids(tokens)
tokens_shape_ids = self.convert_tokens_to_shape_ids(tokens)
tokens_proun_ids = self.convert_tokens_to_pronunciation_ids(tokens)
return tokens_ids, tokens_shape_ids, tokens_proun_ids
elif isinstance(text, (list, tuple)) and len(text) > 0 and isinstance(text[0], str):
if is_split_into_words:
tokens = list(
itertools.chain(*(self.tokenize(t, is_split_into_words=True, **kwargs) for t in text))
)
tokens_ids = self.convert_tokens_to_ids(tokens)
tokens_shape_ids = self.convert_tokens_to_shape_ids(tokens)
tokens_proun_ids = self.convert_tokens_to_pronunciation_ids(tokens)
return tokens_ids, tokens_shape_ids, tokens_proun_ids
else:
tokens_ids = self.convert_tokens_to_ids(text)
tokens_shape_ids = self.convert_tokens_to_shape_ids(text)
tokens_proun_ids = self.convert_tokens_to_pronunciation_ids(text)
return tokens_ids, tokens_shape_ids, tokens_proun_ids
elif isinstance(text, (list, tuple)) and len(text) > 0 and isinstance(text[0], int):
return text, [0] * len(text), [0] * len(text) # shape and proun id is pad_value
else:
if is_split_into_words:
raise ValueError(
f"Input {text} is not valid. Should be a string or a list/tuple of strings when"
" `is_split_into_words=True`."
)
else:
raise ValueError(
f"Input {text} is not valid. Should be a string, a list/tuple of strings or a list/tuple of"
" integers."
)
if return_offsets_mapping:
raise NotImplementedError(
"return_offset_mapping is not available when using Python tokenizers. "
"To use this feature, change your tokenizer to one deriving from "
"transformers.PreTrainedTokenizerFast. "
"More information on available tokenizers at "
"https://github.com/huggingface/transformers/pull/2674"
)
first_ids, first_shape_ids, first_proun_ids = get_input_ids(text)
if text_pair is not None:
second_ids, second_shape_ids, second_proun_ids = get_input_ids(text_pair)
else:
second_ids, second_shape_ids, second_proun_ids = None, None, None
return self.prepare_for_model(
first_ids,
first_shape_ids,
first_proun_ids,
pair_ids=second_ids,
pair_shape_ids=second_shape_ids,
pair_pronunciation_ids=second_proun_ids,
add_special_tokens=add_special_tokens,
padding=padding_strategy.value,
truncation=truncation_strategy.value,
max_length=max_length,
stride=stride,
pad_to_multiple_of=pad_to_multiple_of,
return_tensors=return_tensors,
prepend_batch_axis=True,
return_attention_mask=return_attention_mask,
return_token_type_ids=return_token_type_ids,
return_overflowing_tokens=return_overflowing_tokens,
return_special_tokens_mask=return_special_tokens_mask,
return_length=return_length,
verbose=verbose,
)
@add_end_docstrings(ENCODE_KWARGS_DOCSTRING, ENCODE_PLUS_ADDITIONAL_KWARGS_DOCSTRING)
def prepare_for_model(
self,
ids: List[int],
shape_ids: List[int],
pronunciation_ids: List[int],
pair_ids: Optional[List[int]] = None,
pair_shape_ids: Optional[List[int]] = None,
pair_pronunciation_ids: Optional[List[int]] = None,
add_special_tokens: bool = True,
padding: Union[bool, str, PaddingStrategy] = False,
truncation: Union[bool, str, TruncationStrategy] = None,
max_length: Optional[int] = None,
stride: int = 0,
pad_to_multiple_of: Optional[int] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
return_token_type_ids: Optional[bool] = None,
return_attention_mask: Optional[bool] = None,
return_overflowing_tokens: bool = False,
return_special_tokens_mask: bool = False,
return_offsets_mapping: bool = False,
return_length: bool = False,
verbose: bool = True,
prepend_batch_axis: bool = False,
**kwargs,
) -> BatchEncoding:
"""
Prepares a sequence of input id, or a pair of sequences of inputs ids so that it can be used by the model. It
adds special tokens, truncates sequences if overflowing while taking into account the special tokens and
manages a moving window (with user defined stride) for overflowing tokens. Please Note, for *pair_ids*
different than `None` and *truncation_strategy = longest_first* or `True`, it is not possible to return
overflowing tokens. Such a combination of arguments will raise an error.
Args:
ids (`List[int]`):
Tokenized input ids of the first sequence. Can be obtained from a string by chaining the `tokenize` and
`convert_tokens_to_id` methods.
shape_ids (`List[int]`):
Tokenized input ids of the first sequence. Can be obtained from a string by chaining the `tokenize` and
`convert_token_to_shape_id` methods.
pronunciation_ids (`List[int]`):
Tokenized input ids of the first sequence. Can be obtained from a string by chaining the `tokenize` and
`convert_token_to_pronunciation_id` methods.
pair_ids (`List[int]`, *optional*):
Tokenized input ids of the second sequence. Can be obtained from a string by chaining the `tokenize`
and `convert_tokens_to_id` methods.
pair_shape_ids (`List[int]`, *optional*):
Tokenized input ids of the second sequence. Can be obtained from a string by chaining the `tokenize`
and `convert_token_to_shape_id` methods.
pair_pronunciation_ids (`List[int]`, *optional*):
Tokenized input ids of the second sequence. Can be obtained from a string by chaining the `tokenize`
and `convert_token_to_pronunciation_id` methods.
"""
# Backward compatibility for 'truncation_strategy', 'pad_to_max_length'
padding_strategy, truncation_strategy, max_length, kwargs = self._get_padding_truncation_strategies(
padding=padding,
truncation=truncation,
max_length=max_length,
pad_to_multiple_of=pad_to_multiple_of,
verbose=verbose,
**kwargs,
)
pair = bool(pair_ids is not None)
len_ids = len(ids)
len_pair_ids = len(pair_ids) if pair else 0
if return_token_type_ids and not add_special_tokens:
raise ValueError(
"Asking to return token_type_ids while setting add_special_tokens to False "
"results in an undefined behavior. Please set add_special_tokens to True or "
"set return_token_type_ids to None."
)
if (
return_overflowing_tokens
and truncation_strategy == TruncationStrategy.LONGEST_FIRST
and pair_ids is not None
):
raise ValueError(
"Not possible to return overflowing tokens for pair of sequences with the "
"`longest_first`. Please select another truncation strategy than `longest_first`, "
"for instance `only_second` or `only_first`."
)
# Load from model defaults
if return_token_type_ids is None:
return_token_type_ids = "token_type_ids" in self.model_input_names
if return_attention_mask is None:
return_attention_mask = "attention_mask" in self.model_input_names
encoded_inputs = {}
# Compute the total size of the returned encodings
total_len = len_ids + len_pair_ids + (self.num_special_tokens_to_add(pair=pair) if add_special_tokens else 0)
# Truncation: Handle max sequence length
overflowing_tokens = []
if truncation_strategy != TruncationStrategy.DO_NOT_TRUNCATE and max_length and total_len > max_length:
ids, pair_ids, overflowing_tokens = self.truncate_sequences(
ids,
pair_ids=pair_ids,
num_tokens_to_remove=total_len - max_length,
truncation_strategy=truncation_strategy,
stride=stride,
)
shape_ids, pair_shape_ids, _ = self.truncate_sequences(
shape_ids,
pair_ids=pair_shape_ids,
num_tokens_to_remove=total_len - max_length,
truncation_strategy=truncation_strategy,
stride=stride,
)
pronunciation_ids, pair_pronunciation_ids, _ = self.truncate_sequences(
pronunciation_ids,
pair_ids=pair_pronunciation_ids,
num_tokens_to_remove=total_len - max_length,
truncation_strategy=truncation_strategy,
stride=stride,
)
if return_overflowing_tokens:
encoded_inputs["overflowing_tokens"] = overflowing_tokens
encoded_inputs["num_truncated_tokens"] = total_len - max_length
# Add special tokens
if add_special_tokens:
sequence = self.build_inputs_with_special_tokens(ids, pair_ids)
token_type_ids = self.create_token_type_ids_from_sequences(ids, pair_ids)
input_shape_ids = self.build_inputs_with_special_tokens(
shape_ids, pair_shape_ids, self.word_shape["[UNK]"], self.word_shape["[UNK]"]
)
input_pronunciation_ids = self.build_inputs_with_special_tokens(
pronunciation_ids,
pair_pronunciation_ids,
self.word_pronunciation["[UNK]"],
self.word_pronunciation["[UNK]"],
)
else:
sequence = ids + pair_ids if pair_ids else ids
token_type_ids = [0] * len(ids) + ([0] * len(pair_ids) if pair_ids else [])
input_shape_ids = shape_ids + pair_shape_ids if pair_shape_ids else shape_ids
input_pronunciation_ids = (
pronunciation_ids + pair_pronunciation_ids if pair_pronunciation_ids else pronunciation_ids
)
# Build output dictionary
encoded_inputs["input_ids"] = sequence
encoded_inputs["input_shape_ids"] = input_shape_ids
encoded_inputs["input_pronunciation_ids"] = input_pronunciation_ids
if return_token_type_ids:
encoded_inputs["token_type_ids"] = token_type_ids
if return_special_tokens_mask:
if add_special_tokens:
encoded_inputs["special_tokens_mask"] = self.get_special_tokens_mask(ids, pair_ids)
else:
encoded_inputs["special_tokens_mask"] = [0] * len(sequence)
# Check lengths
self._eventual_warn_about_too_long_sequence(encoded_inputs["input_ids"], max_length, verbose)
# Padding
if padding_strategy != PaddingStrategy.DO_NOT_PAD or return_attention_mask:
encoded_inputs = self.pad(
encoded_inputs,
max_length=max_length,
padding=padding_strategy.value,
pad_to_multiple_of=pad_to_multiple_of,
return_attention_mask=return_attention_mask,
)
if return_length:
encoded_inputs["length"] = len(encoded_inputs["input_ids"])
batch_outputs = BatchEncoding(
encoded_inputs, tensor_type=return_tensors, prepend_batch_axis=prepend_batch_axis
)
return batch_outputs
def _pad(
self,
encoded_inputs: Union[Dict[str, EncodedInput], BatchEncoding],
max_length: Optional[int] = None,
padding_strategy: PaddingStrategy = PaddingStrategy.DO_NOT_PAD,
pad_to_multiple_of: Optional[int] = None,
return_attention_mask: Optional[bool] = None,
) -> dict:
# Load from model defaults
if return_attention_mask is None:
return_attention_mask = "attention_mask" in self.model_input_names
required_input = encoded_inputs[self.model_input_names[0]]
if padding_strategy == PaddingStrategy.LONGEST:
max_length = len(required_input)
if max_length is not None and pad_to_multiple_of is not None and (max_length % pad_to_multiple_of != 0):
max_length = ((max_length // pad_to_multiple_of) + 1) * pad_to_multiple_of
needs_to_be_padded = padding_strategy != PaddingStrategy.DO_NOT_PAD and len(required_input) != max_length
# Initialize attention mask if not present.
if return_attention_mask and "attention_mask" not in encoded_inputs:
encoded_inputs["attention_mask"] = [1] * len(required_input)
if needs_to_be_padded:
difference = max_length - len(required_input)
if self.padding_side == "right":
if return_attention_mask:
encoded_inputs["attention_mask"] = encoded_inputs["attention_mask"] + [0] * difference
if "token_type_ids" in encoded_inputs:
encoded_inputs["token_type_ids"] = (
encoded_inputs["token_type_ids"] + [self.pad_token_type_id] * difference
)
if "special_tokens_mask" in encoded_inputs:
encoded_inputs["special_tokens_mask"] = encoded_inputs["special_tokens_mask"] + [1] * difference
for key in ["input_shape_ids", "input_pronunciation_ids"]:
if key in encoded_inputs:
encoded_inputs[key] = encoded_inputs[key] + [self.pad_token_id] * difference
encoded_inputs[self.model_input_names[0]] = required_input + [self.pad_token_id] * difference
elif self.padding_side == "left":
if return_attention_mask:
encoded_inputs["attention_mask"] = [0] * difference + encoded_inputs["attention_mask"]
if "token_type_ids" in encoded_inputs:
encoded_inputs["token_type_ids"] = [self.pad_token_type_id] * difference + encoded_inputs[
"token_type_ids"
]
if "special_tokens_mask" in encoded_inputs:
encoded_inputs["special_tokens_mask"] = [1] * difference + encoded_inputs["special_tokens_mask"]
for key in ["input_shape_ids", "input_pronunciation_ids"]:
if key in encoded_inputs:
encoded_inputs[key] = [self.pad_token_id] * difference + encoded_inputs[key]
encoded_inputs[self.model_input_names[0]] = [self.pad_token_id] * difference + required_input
else:
raise ValueError("Invalid padding strategy:" + str(self.padding_side))
return encoded_inputs
def _batch_encode_plus(
self,
batch_text_or_text_pairs: Union[
List[TextInput],
List[TextInputPair],
List[PreTokenizedInput],
List[PreTokenizedInputPair],
List[EncodedInput],
List[EncodedInputPair],
],
add_special_tokens: bool = True,
padding_strategy: PaddingStrategy = PaddingStrategy.DO_NOT_PAD,
truncation_strategy: TruncationStrategy = TruncationStrategy.DO_NOT_TRUNCATE,
max_length: Optional[int] = None,
stride: int = 0,
is_split_into_words: bool = False,
pad_to_multiple_of: Optional[int] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
return_token_type_ids: Optional[bool] = None,
return_attention_mask: Optional[bool] = None,
return_overflowing_tokens: bool = False,
return_special_tokens_mask: bool = False,
return_offsets_mapping: bool = False,
return_length: bool = False,
verbose: bool = True,
**kwargs,
) -> BatchEncoding:
def get_input_ids(text):
if isinstance(text, str):
tokens = self.tokenize(text, **kwargs)
tokens_ids = self.convert_tokens_to_ids(tokens)
tokens_shape_ids = self.convert_tokens_to_shape_ids(tokens)
tokens_proun_ids = self.convert_tokens_to_pronunciation_ids(tokens)
return tokens_ids, tokens_shape_ids, tokens_proun_ids
elif isinstance(text, (list, tuple)) and len(text) > 0 and isinstance(text[0], str):
if is_split_into_words:
tokens = list(
itertools.chain(*(self.tokenize(t, is_split_into_words=True, **kwargs) for t in text))
)
tokens_ids = self.convert_tokens_to_ids(tokens)
tokens_shape_ids = self.convert_tokens_to_shape_ids(tokens)
tokens_proun_ids = self.convert_tokens_to_pronunciation_ids(tokens)
return tokens_ids, tokens_shape_ids, tokens_proun_ids
else:
tokens_ids = self.convert_tokens_to_ids(text)
tokens_shape_ids = self.convert_tokens_to_shape_ids(text)
tokens_proun_ids = self.convert_tokens_to_pronunciation_ids(text)
return tokens_ids, tokens_shape_ids, tokens_proun_ids
elif isinstance(text, (list, tuple)) and len(text) > 0 and isinstance(text[0], int):
return text, [0] * len(text), [0] * len(text) # shape and proun id is pad_value
else:
raise ValueError(
"Input is not valid. Should be a string, a list/tuple of strings or a list/tuple of integers."
)
if return_offsets_mapping:
raise NotImplementedError(
"return_offset_mapping is not available when using Python tokenizers. "
"To use this feature, change your tokenizer to one deriving from "
"transformers.PreTrainedTokenizerFast."
)
input_ids = []
input_shape_ids = []
input_pronunciation_ids = []
for ids_or_pair_ids in batch_text_or_text_pairs:
if not isinstance(ids_or_pair_ids, (list, tuple)):
ids, pair_ids = ids_or_pair_ids, None
elif is_split_into_words and not isinstance(ids_or_pair_ids[0], (list, tuple)):
ids, pair_ids = ids_or_pair_ids, None
else:
ids, pair_ids = ids_or_pair_ids
first_ids, first_shape_ids, first_proun_ids = get_input_ids(ids)
if pair_ids is not None:
second_ids, second_shape_ids, second_proun_ids = get_input_ids(pair_ids)
else:
second_ids, second_shape_ids, second_proun_ids = None, None, None
input_ids.append((first_ids, second_ids))
input_shape_ids.append((first_shape_ids, second_shape_ids))
input_pronunciation_ids.append((first_proun_ids, second_proun_ids))
batch_outputs = self._batch_prepare_for_model(
input_ids,
batch_shape_ids_pairs=input_shape_ids,
batch_pronunciation_ids_pairs=input_pronunciation_ids,
add_special_tokens=add_special_tokens,
padding_strategy=padding_strategy,
truncation_strategy=truncation_strategy,
max_length=max_length,
stride=stride,
pad_to_multiple_of=pad_to_multiple_of,
return_attention_mask=return_attention_mask,
return_token_type_ids=return_token_type_ids,
return_overflowing_tokens=return_overflowing_tokens,
return_special_tokens_mask=return_special_tokens_mask,
return_length=return_length,
return_tensors=return_tensors,
verbose=verbose,
)
return BatchEncoding(batch_outputs)
@add_end_docstrings(ENCODE_KWARGS_DOCSTRING, ENCODE_PLUS_ADDITIONAL_KWARGS_DOCSTRING)
def _batch_prepare_for_model(
self,
batch_ids_pairs: List[Union[PreTokenizedInputPair, Tuple[List[int], None]]],
batch_shape_ids_pairs: List[Union[PreTokenizedInputPair, Tuple[List[int], None]]],
batch_pronunciation_ids_pairs: List[Union[PreTokenizedInputPair, Tuple[List[int], None]]],
add_special_tokens: bool = True,
padding_strategy: PaddingStrategy = PaddingStrategy.DO_NOT_PAD,
truncation_strategy: TruncationStrategy = TruncationStrategy.DO_NOT_TRUNCATE,
max_length: Optional[int] = None,
stride: int = 0,
pad_to_multiple_of: Optional[int] = None,
return_tensors: Optional[str] = None,
return_token_type_ids: Optional[bool] = None,
return_attention_mask: Optional[bool] = None,
return_overflowing_tokens: bool = False,
return_special_tokens_mask: bool = False,
return_length: bool = False,
verbose: bool = True,
) -> BatchEncoding:
"""
Prepares a sequence of input id, or a pair of sequences of inputs ids so that it can be used by the model. It
adds special tokens, truncates sequences if overflowing while taking into account the special tokens and
manages a moving window (with user defined stride) for overflowing tokens
Args:
batch_ids_pairs: list of tokenized input ids or input ids pairs
batch_shape_ids_pairs: list of tokenized input shape ids or input shape ids pairs
batch_pronunciation_ids_pairs: list of tokenized input pronunciation ids or input pronunciation ids pairs
"""
batch_outputs = {}
for i, (first_ids, second_ids) in enumerate(batch_ids_pairs):
first_shape_ids, second_shape_ids = batch_shape_ids_pairs[i]
first_pronunciation_ids, second_pronunciation_ids = batch_pronunciation_ids_pairs[i]
outputs = self.prepare_for_model(
first_ids,
first_shape_ids,
first_pronunciation_ids,
pair_ids=second_ids,
pair_shape_ids=second_shape_ids,
pair_pronunciation_ids=second_pronunciation_ids,
add_special_tokens=add_special_tokens,
padding=PaddingStrategy.DO_NOT_PAD.value, # we pad in batch afterward
truncation=truncation_strategy.value,
max_length=max_length,
stride=stride,
pad_to_multiple_of=None, # we pad in batch afterward
return_attention_mask=False, # we pad in batch afterward
return_token_type_ids=return_token_type_ids,
return_overflowing_tokens=return_overflowing_tokens,
return_special_tokens_mask=return_special_tokens_mask,
return_length=return_length,
return_tensors=None, # We convert the whole batch to tensors at the end
prepend_batch_axis=False,
verbose=verbose,
)
for key, value in outputs.items():
if key not in batch_outputs:
batch_outputs[key] = []
batch_outputs[key].append(value)
batch_outputs = self.pad(
batch_outputs,
padding=padding_strategy.value,
max_length=max_length,
pad_to_multiple_of=pad_to_multiple_of,
return_attention_mask=return_attention_mask,
)
batch_outputs = BatchEncoding(batch_outputs, tensor_type=return_tensors)
return batch_outputs
# Copied from transformers.models.bert.tokenization_bert.BertTokenizer._convert_token_to_id
def _convert_token_to_id(self, token):
"""Converts a token (str) in an id using the vocab."""
return self.vocab.get(token, self.vocab.get(self.unk_token))
def _convert_token_to_shape_id(self, token):
"""Converts a token (str) in an shape_id using the shape vocab."""
return self.word_shape.get(token, self.word_shape.get(self.unk_token))
def convert_tokens_to_shape_ids(self, tokens: Union[str, List[str]]) -> Union[int, List[int]]:
if tokens is None:
return None
ids = []
for token in tokens:
ids.append(self._convert_token_to_shape_id(token))
return ids
def _convert_token_to_pronunciation_id(self, token):
"""Converts a token (str) in an shape_id using the shape vocab."""
return self.word_pronunciation.get(token, self.word_pronunciation.get(self.unk_token))
def convert_tokens_to_pronunciation_ids(self, tokens: Union[str, List[str]]) -> Union[int, List[int]]:
if tokens is None:
return None
ids = []
for token in tokens:
ids.append(self._convert_token_to_pronunciation_id(token))
return ids
# Copied from transformers.models.bert.tokenization_bert.BertTokenizer._convert_id_to_token
def _convert_id_to_token(self, index):
"""Converts an index (integer) in a token (str) using the vocab."""
return self.ids_to_tokens.get(index, self.unk_token)
# Copied from transformers.models.bert.tokenization_bert.BertTokenizer.convert_tokens_to_string
def convert_tokens_to_string(self, tokens):
"""Converts a sequence of tokens (string) in a single string."""
out_string = " ".join(tokens).replace(" ##", "").strip()
return out_string
def build_inputs_with_special_tokens(
self,
token_ids_0: List[int],
token_ids_1: Optional[List[int]] = None,
cls_token_id: int = None,
sep_token_id: int = None,
) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. A BERT sequence has the following format:
- single sequence: `[CLS] X [SEP]`
- pair of sequences: `[CLS] A [SEP] B [SEP]`
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
cls = [self.cls_token_id] if cls_token_id is None else [cls_token_id]
sep = [self.sep_token_id] if sep_token_id is None else [sep_token_id]
if token_ids_1 is None:
return cls + token_ids_0 + sep
return cls + token_ids_0 + sep + token_ids_1 + sep
# Copied from transformers.models.bert.tokenization_bert.BertTokenizer.get_special_tokens_mask
def get_special_tokens_mask(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieve sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer `prepare_for_model` method.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
already_has_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
`List[int]`: A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
return super().get_special_tokens_mask(
token_ids_0=token_ids_0, token_ids_1=token_ids_1, already_has_special_tokens=True
)
if token_ids_1 is not None:
return [1] + ([0] * len(token_ids_0)) + [1] + ([0] * len(token_ids_1)) + [1]
return [1] + ([0] * len(token_ids_0)) + [1]
# Copied from transformers.models.bert.tokenization_bert.BertTokenizer.create_token_type_ids_from_sequences
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. A BERT sequence
pair mask has the following format:
```
0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1
| first sequence | second sequence |
```
If `token_ids_1` is `None`, this method only returns the first portion of the mask (0s).
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [token type IDs](../glossary#token-type-ids) according to the given sequence(s).
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return len(cls + token_ids_0 + sep) * [0]
return len(cls + token_ids_0 + sep) * [0] + len(token_ids_1 + sep) * [1]
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str, str, str]:
index = 0
if os.path.isdir(save_directory):
vocab_file = os.path.join(
save_directory,
(filename_prefix + "-" if filename_prefix else "") + self.vocab_files_names["vocab_file"],
)
word_shape_file = os.path.join(
save_directory,
(filename_prefix + "-" if filename_prefix else "") + self.vocab_files_names["word_shape_file"],
)
word_pronunciation_file = os.path.join(
save_directory,
(filename_prefix + "-" if filename_prefix else "") + self.vocab_files_names["word_pronunciation_file"],
)
else:
raise ValueError(
f"Can't find a directory at path '{save_directory}'. To load the vocabulary from a Google "
"pretrained model use `tokenizer = RoCBertTokenizer.from_pretrained(PRETRAINED_MODEL_NAME)`"
)
with open(vocab_file, "w", encoding="utf-8") as writer:
for token, token_index in sorted(self.vocab.items(), key=lambda kv: kv[1]):
if index != token_index:
logger.warning(
f"Saving vocabulary to {vocab_file}: vocabulary indices are not consecutive."
" Please check that the vocabulary is not corrupted!"
)
index = token_index
writer.write(token + "\n")
index += 1
with open(word_shape_file, "w", encoding="utf8") as writer:
json.dump(self.word_shape, writer, ensure_ascii=False, indent=4, separators=(", ", ": "))
with open(word_pronunciation_file, "w", encoding="utf8") as writer:
json.dump(self.word_pronunciation, writer, ensure_ascii=False, indent=4, separators=(", ", ": "))
return (
vocab_file,
word_shape_file,
word_pronunciation_file,
)
# Copied from transformers.models.bert.tokenization_bert.BasicTokenizer with BasicTokenizer->RoCBertBasicTokenizer
class RoCBertBasicTokenizer(object):
"""
Constructs a RoCBertBasicTokenizer that will run basic tokenization (punctuation splitting, lower casing, etc.).
Args:
do_lower_case (`bool`, *optional*, defaults to `True`):
Whether or not to lowercase the input when tokenizing.
never_split (`Iterable`, *optional*):
Collection of tokens which will never be split during tokenization. Only has an effect when
`do_basic_tokenize=True`
tokenize_chinese_chars (`bool`, *optional*, defaults to `True`):
Whether or not to tokenize Chinese characters.
This should likely be deactivated for Japanese (see this
[issue](https://github.com/huggingface/transformers/issues/328)).
strip_accents (`bool`, *optional*):
Whether or not to strip all accents. If this option is not specified, then it will be determined by the
value for `lowercase` (as in the original BERT).
do_split_on_punc (`bool`, *optional*, defaults to `True`):
In some instances we want to skip the basic punctuation splitting so that later tokenization can capture
the full context of the words, such as contractions.
"""
def __init__(
self,
do_lower_case=True,
never_split=None,
tokenize_chinese_chars=True,
strip_accents=None,
do_split_on_punc=True,
):
if never_split is None:
never_split = []
self.do_lower_case = do_lower_case
self.never_split = set(never_split)
self.tokenize_chinese_chars = tokenize_chinese_chars
self.strip_accents = strip_accents
self.do_split_on_punc = do_split_on_punc
def tokenize(self, text, never_split=None):
"""
Basic Tokenization of a piece of text. For sub-word tokenization, see WordPieceTokenizer.
Args:
never_split (`List[str]`, *optional*)
Kept for backward compatibility purposes. Now implemented directly at the base class level (see
[`PreTrainedTokenizer.tokenize`]) List of token not to split.
"""
# union() returns a new set by concatenating the two sets.
never_split = self.never_split.union(set(never_split)) if never_split else self.never_split
text = self._clean_text(text)
# This was added on November 1st, 2018 for the multilingual and Chinese
# models. This is also applied to the English models now, but it doesn't
# matter since the English models were not trained on any Chinese data
# and generally don't have any Chinese data in them (there are Chinese
# characters in the vocabulary because Wikipedia does have some Chinese
# words in the English Wikipedia.).
if self.tokenize_chinese_chars:
text = self._tokenize_chinese_chars(text)
# prevents treating the same character with different unicode codepoints as different characters
unicode_normalized_text = unicodedata.normalize("NFC", text)
orig_tokens = whitespace_tokenize(unicode_normalized_text)
split_tokens = []
for token in orig_tokens:
if token not in never_split:
if self.do_lower_case:
token = token.lower()
if self.strip_accents is not False:
token = self._run_strip_accents(token)
elif self.strip_accents:
token = self._run_strip_accents(token)
split_tokens.extend(self._run_split_on_punc(token, never_split))
output_tokens = whitespace_tokenize(" ".join(split_tokens))
return output_tokens
def _run_strip_accents(self, text):
"""Strips accents from a piece of text."""
text = unicodedata.normalize("NFD", text)
output = []
for char in text:
cat = unicodedata.category(char)
if cat == "Mn":
continue
output.append(char)
return "".join(output)
def _run_split_on_punc(self, text, never_split=None):
"""Splits punctuation on a piece of text."""
if not self.do_split_on_punc or (never_split is not None and text in never_split):
return [text]
chars = list(text)
i = 0
start_new_word = True
output = []
while i < len(chars):
char = chars[i]
if _is_punctuation(char):
output.append([char])
start_new_word = True
else:
if start_new_word:
output.append([])
start_new_word = False
output[-1].append(char)
i += 1
return ["".join(x) for x in output]
def _tokenize_chinese_chars(self, text):
"""Adds whitespace around any CJK character."""
output = []
for char in text:
cp = ord(char)
if self._is_chinese_char(cp):
output.append(" ")
output.append(char)
output.append(" ")
else:
output.append(char)
return "".join(output)
def _is_chinese_char(self, cp):
"""Checks whether CP is the codepoint of a CJK character."""
# This defines a "chinese character" as anything in the CJK Unicode block:
# https://en.wikipedia.org/wiki/CJK_Unified_Ideographs_(Unicode_block)
#
# Note that the CJK Unicode block is NOT all Japanese and Korean characters,
# despite its name. The modern Korean Hangul alphabet is a different block,
# as is Japanese Hiragana and Katakana. Those alphabets are used to write
# space-separated words, so they are not treated specially and handled
# like the all of the other languages.
if (
(cp >= 0x4E00 and cp <= 0x9FFF)
or (cp >= 0x3400 and cp <= 0x4DBF) #
or (cp >= 0x20000 and cp <= 0x2A6DF) #
or (cp >= 0x2A700 and cp <= 0x2B73F) #
or (cp >= 0x2B740 and cp <= 0x2B81F) #
or (cp >= 0x2B820 and cp <= 0x2CEAF) #
or (cp >= 0xF900 and cp <= 0xFAFF)
or (cp >= 0x2F800 and cp <= 0x2FA1F) #
): #
return True
return False
def _clean_text(self, text):
"""Performs invalid character removal and whitespace cleanup on text."""
output = []
for char in text:
cp = ord(char)
if cp == 0 or cp == 0xFFFD or _is_control(char):
continue
if _is_whitespace(char):
output.append(" ")
else:
output.append(char)
return "".join(output)
# Copied from transformers.models.bert.tokenization_bert.WordpieceTokenizer with WordpieceTokenizer->RoCBertWordpieceTokenizer
class RoCBertWordpieceTokenizer(object):
"""Runs WordPiece tokenization."""
def __init__(self, vocab, unk_token, max_input_chars_per_word=100):
self.vocab = vocab
self.unk_token = unk_token
self.max_input_chars_per_word = max_input_chars_per_word
def tokenize(self, text):
"""
Tokenizes a piece of text into its word pieces. This uses a greedy longest-match-first algorithm to perform
tokenization using the given vocabulary.
For example, `input = "unaffable"` wil return as output `["un", "##aff", "##able"]`.
Args:
text: A single token or whitespace separated tokens. This should have
already been passed through *BasicTokenizer*.
Returns:
A list of wordpiece tokens.
"""
output_tokens = []
for token in whitespace_tokenize(text):
chars = list(token)
if len(chars) > self.max_input_chars_per_word:
output_tokens.append(self.unk_token)
continue
is_bad = False
start = 0
sub_tokens = []
while start < len(chars):
end = len(chars)
cur_substr = None
while start < end:
substr = "".join(chars[start:end])
if start > 0:
substr = "##" + substr
if substr in self.vocab:
cur_substr = substr
break
end -= 1
if cur_substr is None:
is_bad = True
break
sub_tokens.append(cur_substr)
start = end
if is_bad:
output_tokens.append(self.unk_token)
else:
output_tokens.extend(sub_tokens)
return output_tokens
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/camembert/tokenization_camembert_fast.py | # coding=utf-8
# Copyright 2018 Google AI, Google Brain and Carnegie Mellon University Authors and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License
""" Fast tokenization classes for Camembert model."""
import os
from shutil import copyfile
from typing import List, Optional, Tuple
from ...tokenization_utils import AddedToken
from ...tokenization_utils_fast import PreTrainedTokenizerFast
from ...utils import is_sentencepiece_available, logging
if is_sentencepiece_available():
from .tokenization_camembert import CamembertTokenizer
else:
CamembertTokenizer = None
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "sentencepiece.bpe.model", "tokenizer_file": "tokenizer.json"}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {
"camembert-base": "https://huggingface.co/camembert-base/resolve/main/sentencepiece.bpe.model",
},
"tokenizer_file": {
"camembert-base": "https://huggingface.co/camembert-base/resolve/main/tokenizer.json",
},
}
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {
"camembert-base": 512,
}
SPIECE_UNDERLINE = "▁"
class CamembertTokenizerFast(PreTrainedTokenizerFast):
"""
Construct a "fast" CamemBERT tokenizer (backed by HuggingFace's *tokenizers* library). Adapted from
[`RobertaTokenizer`] and [`XLNetTokenizer`]. Based on
[BPE](https://huggingface.co/docs/tokenizers/python/latest/components.html?highlight=BPE#models).
This tokenizer inherits from [`PreTrainedTokenizerFast`] which contains most of the main methods. Users should
refer to this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
[SentencePiece](https://github.com/google/sentencepiece) file (generally has a *.spm* extension) that
contains the vocabulary necessary to instantiate a tokenizer.
bos_token (`str`, *optional*, defaults to `"<s>"`):
The beginning of sequence token that was used during pretraining. Can be used a sequence classifier token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the beginning of
sequence. The token used is the `cls_token`.
</Tip>
eos_token (`str`, *optional*, defaults to `"</s>"`):
The end of sequence token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the end of sequence.
The token used is the `sep_token`.
</Tip>
sep_token (`str`, *optional*, defaults to `"</s>"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
cls_token (`str`, *optional*, defaults to `"<s>"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
mask_token (`str`, *optional*, defaults to `"<mask>"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
additional_special_tokens (`List[str]`, *optional*, defaults to `["<s>NOTUSED", "</s>NOTUSED"]`):
Additional special tokens used by the tokenizer.
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
model_input_names = ["input_ids", "attention_mask"]
slow_tokenizer_class = CamembertTokenizer
def __init__(
self,
vocab_file=None,
tokenizer_file=None,
bos_token="<s>",
eos_token="</s>",
sep_token="</s>",
cls_token="<s>",
unk_token="<unk>",
pad_token="<pad>",
mask_token="<mask>",
additional_special_tokens=["<s>NOTUSED", "</s>NOTUSED", "<unk>NOTUSED"],
**kwargs,
):
# Mask token behave like a normal word, i.e. include the space before it. Will have normalized = False
mask_token = AddedToken(mask_token, lstrip=True, special=True) if isinstance(mask_token, str) else mask_token
super().__init__(
vocab_file,
tokenizer_file=tokenizer_file,
bos_token=bos_token,
eos_token=eos_token,
sep_token=sep_token,
cls_token=cls_token,
unk_token=unk_token,
pad_token=pad_token,
mask_token=mask_token,
additional_special_tokens=additional_special_tokens,
**kwargs,
)
self.vocab_file = vocab_file
@property
def can_save_slow_tokenizer(self) -> bool:
return os.path.isfile(self.vocab_file) if self.vocab_file else False
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. An CamemBERT sequence has the following format:
- single sequence: `<s> X </s>`
- pair of sequences: `<s> A </s></s> B </s>`
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
if token_ids_1 is None:
return [self.cls_token_id] + token_ids_0 + [self.sep_token_id]
cls = [self.cls_token_id]
sep = [self.sep_token_id]
return cls + token_ids_0 + sep + sep + token_ids_1 + sep
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. CamemBERT, like
RoBERTa, does not make use of token type ids, therefore a list of zeros is returned.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of zeros.
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return len(cls + token_ids_0 + sep) * [0]
return len(cls + token_ids_0 + sep + sep + token_ids_1 + sep) * [0]
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not self.can_save_slow_tokenizer:
raise ValueError(
"Your fast tokenizer does not have the necessary information to save the vocabulary for a slow "
"tokenizer."
)
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory")
return
out_vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
if os.path.abspath(self.vocab_file) != os.path.abspath(out_vocab_file):
copyfile(self.vocab_file, out_vocab_file)
return (out_vocab_file,)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/camembert/modeling_tf_camembert.py | # coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" TF 2.0 CamemBERT model."""
from __future__ import annotations
import math
import warnings
from typing import Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutputWithPastAndCrossAttentions,
TFBaseModelOutputWithPoolingAndCrossAttentions,
TFCausalLMOutputWithCrossAttentions,
TFMaskedLMOutput,
TFMultipleChoiceModelOutput,
TFQuestionAnsweringModelOutput,
TFSequenceClassifierOutput,
TFTokenClassifierOutput,
)
from ...modeling_tf_utils import (
TFCausalLanguageModelingLoss,
TFMaskedLanguageModelingLoss,
TFModelInputType,
TFMultipleChoiceLoss,
TFPreTrainedModel,
TFQuestionAnsweringLoss,
TFSequenceClassificationLoss,
TFTokenClassificationLoss,
get_initializer,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import check_embeddings_within_bounds, shape_list, stable_softmax
from ...utils import (
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
)
from .configuration_camembert import CamembertConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "camembert-base"
_CONFIG_FOR_DOC = "CamembertConfig"
TF_CAMEMBERT_PRETRAINED_MODEL_ARCHIVE_LIST = [
# See all CamemBERT models at https://huggingface.co/models?filter=camembert
]
CAMEMBERT_START_DOCSTRING = r"""
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a [tf.keras.Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model) subclass. Use it
as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to general usage and
behavior.
<Tip>
TensorFlow models and layers in `transformers` accept two formats as input:
- having all inputs as keyword arguments (like PyTorch models), or
- having all inputs as a list, tuple or dict in the first positional argument.
The reason the second format is supported is that Keras methods prefer this format when passing inputs to models
and layers. Because of this support, when using methods like `model.fit()` things should "just work" for you - just
pass your inputs and labels in any format that `model.fit()` supports! If, however, you want to use the second
format outside of Keras methods like `fit()` and `predict()`, such as when creating your own layers or models with
the Keras `Functional` API, there are three possibilities you can use to gather all the input Tensors in the first
positional argument:
- a single Tensor with `input_ids` only and nothing else: `model(input_ids)`
- a list of varying length with one or several input Tensors IN THE ORDER given in the docstring:
`model([input_ids, attention_mask])` or `model([input_ids, attention_mask, token_type_ids])`
- a dictionary with one or several input Tensors associated to the input names given in the docstring:
`model({"input_ids": input_ids, "token_type_ids": token_type_ids})`
Note that when creating models and layers with
[subclassing](https://keras.io/guides/making_new_layers_and_models_via_subclassing/) then you don't need to worry
about any of this, as you can just pass inputs like you would to any other Python function!
</Tip>
Parameters:
config ([`CamembertConfig`]): Model configuration class with all the parameters of the
model. Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
CAMEMBERT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`Numpy array` or `tf.Tensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.__call__`] and
[`PreTrainedTokenizer.encode`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`Numpy array` or `tf.Tensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
token_type_ids (`Numpy array` or `tf.Tensor` of shape `({0})`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`Numpy array` or `tf.Tensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`Numpy array` or `tf.Tensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`tf.Tensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail. This argument can be used only in eager mode, in graph mode the value in the
config will be used instead.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail. This argument can be used only in eager mode, in graph mode the value in the config will be
used instead.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple. This argument can be used in
eager mode, in graph mode the value will always be set to True.
training (`bool`, *optional*, defaults to `False`):
Whether or not to use the model in training mode (some modules like dropout modules have different
behaviors between training and evaluation).
"""
# Copied from transformers.models.roberta.modeling_tf_roberta.TFRobertaEmbeddings
class TFCamembertEmbeddings(tf.keras.layers.Layer):
"""
Same as BertEmbeddings with a tiny tweak for positional embeddings indexing.
"""
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.padding_idx = 1
self.config = config
self.hidden_size = config.hidden_size
self.max_position_embeddings = config.max_position_embeddings
self.initializer_range = config.initializer_range
self.LayerNorm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.dropout = tf.keras.layers.Dropout(rate=config.hidden_dropout_prob)
def build(self, input_shape=None):
with tf.name_scope("word_embeddings"):
self.weight = self.add_weight(
name="weight",
shape=[self.config.vocab_size, self.hidden_size],
initializer=get_initializer(self.initializer_range),
)
with tf.name_scope("token_type_embeddings"):
self.token_type_embeddings = self.add_weight(
name="embeddings",
shape=[self.config.type_vocab_size, self.hidden_size],
initializer=get_initializer(self.initializer_range),
)
with tf.name_scope("position_embeddings"):
self.position_embeddings = self.add_weight(
name="embeddings",
shape=[self.max_position_embeddings, self.hidden_size],
initializer=get_initializer(self.initializer_range),
)
if self.built:
return
self.built = True
if getattr(self, "LayerNorm", None) is not None:
with tf.name_scope(self.LayerNorm.name):
self.LayerNorm.build([None, None, self.config.hidden_size])
def create_position_ids_from_input_ids(self, input_ids, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding
symbols are ignored. This is modified from fairseq's `utils.make_positions`.
Args:
input_ids: tf.Tensor
Returns: tf.Tensor
"""
mask = tf.cast(tf.math.not_equal(input_ids, self.padding_idx), dtype=input_ids.dtype)
incremental_indices = (tf.math.cumsum(mask, axis=1) + past_key_values_length) * mask
return incremental_indices + self.padding_idx
def call(
self,
input_ids=None,
position_ids=None,
token_type_ids=None,
inputs_embeds=None,
past_key_values_length=0,
training=False,
):
"""
Applies embedding based on inputs tensor.
Returns:
final_embeddings (`tf.Tensor`): output embedding tensor.
"""
assert not (input_ids is None and inputs_embeds is None)
if input_ids is not None:
check_embeddings_within_bounds(input_ids, self.config.vocab_size)
inputs_embeds = tf.gather(params=self.weight, indices=input_ids)
input_shape = shape_list(inputs_embeds)[:-1]
if token_type_ids is None:
token_type_ids = tf.fill(dims=input_shape, value=0)
if position_ids is None:
if input_ids is not None:
# Create the position ids from the input token ids. Any padded tokens remain padded.
position_ids = self.create_position_ids_from_input_ids(
input_ids=input_ids, past_key_values_length=past_key_values_length
)
else:
position_ids = tf.expand_dims(
tf.range(start=self.padding_idx + 1, limit=input_shape[-1] + self.padding_idx + 1), axis=0
)
position_embeds = tf.gather(params=self.position_embeddings, indices=position_ids)
token_type_embeds = tf.gather(params=self.token_type_embeddings, indices=token_type_ids)
final_embeddings = inputs_embeds + position_embeds + token_type_embeds
final_embeddings = self.LayerNorm(inputs=final_embeddings)
final_embeddings = self.dropout(inputs=final_embeddings, training=training)
return final_embeddings
# Copied from transformers.models.bert.modeling_tf_bert.TFBertPooler with Bert->Camembert
class TFCamembertPooler(tf.keras.layers.Layer):
def __init__(self, config: CamembertConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
activation="tanh",
name="dense",
)
self.config = config
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(inputs=first_token_tensor)
return pooled_output
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
# Copied from transformers.models.bert.modeling_tf_bert.TFBertSelfAttention with Bert->Camembert
class TFCamembertSelfAttention(tf.keras.layers.Layer):
def __init__(self, config: CamembertConfig, **kwargs):
super().__init__(**kwargs)
if config.hidden_size % config.num_attention_heads != 0:
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number "
f"of attention heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.sqrt_att_head_size = math.sqrt(self.attention_head_size)
self.query = tf.keras.layers.Dense(
units=self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="query"
)
self.key = tf.keras.layers.Dense(
units=self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="key"
)
self.value = tf.keras.layers.Dense(
units=self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="value"
)
self.dropout = tf.keras.layers.Dropout(rate=config.attention_probs_dropout_prob)
self.is_decoder = config.is_decoder
self.config = config
def transpose_for_scores(self, tensor: tf.Tensor, batch_size: int) -> tf.Tensor:
# Reshape from [batch_size, seq_length, all_head_size] to [batch_size, seq_length, num_attention_heads, attention_head_size]
tensor = tf.reshape(tensor=tensor, shape=(batch_size, -1, self.num_attention_heads, self.attention_head_size))
# Transpose the tensor from [batch_size, seq_length, num_attention_heads, attention_head_size] to [batch_size, num_attention_heads, seq_length, attention_head_size]
return tf.transpose(tensor, perm=[0, 2, 1, 3])
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor,
head_mask: tf.Tensor,
encoder_hidden_states: tf.Tensor,
encoder_attention_mask: tf.Tensor,
past_key_value: Tuple[tf.Tensor],
output_attentions: bool,
training: bool = False,
) -> Tuple[tf.Tensor]:
batch_size = shape_list(hidden_states)[0]
mixed_query_layer = self.query(inputs=hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_layer = past_key_value[0]
value_layer = past_key_value[1]
attention_mask = encoder_attention_mask
elif is_cross_attention:
key_layer = self.transpose_for_scores(self.key(inputs=encoder_hidden_states), batch_size)
value_layer = self.transpose_for_scores(self.value(inputs=encoder_hidden_states), batch_size)
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_for_scores(self.key(inputs=hidden_states), batch_size)
value_layer = self.transpose_for_scores(self.value(inputs=hidden_states), batch_size)
key_layer = tf.concat([past_key_value[0], key_layer], axis=2)
value_layer = tf.concat([past_key_value[1], value_layer], axis=2)
else:
key_layer = self.transpose_for_scores(self.key(inputs=hidden_states), batch_size)
value_layer = self.transpose_for_scores(self.value(inputs=hidden_states), batch_size)
query_layer = self.transpose_for_scores(mixed_query_layer, batch_size)
if self.is_decoder:
# if cross_attention save Tuple(tf.Tensor, tf.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(tf.Tensor, tf.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_layer, value_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
# (batch size, num_heads, seq_len_q, seq_len_k)
attention_scores = tf.matmul(query_layer, key_layer, transpose_b=True)
dk = tf.cast(self.sqrt_att_head_size, dtype=attention_scores.dtype)
attention_scores = tf.divide(attention_scores, dk)
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in TFCamembertModel call() function)
attention_scores = tf.add(attention_scores, attention_mask)
# Normalize the attention scores to probabilities.
attention_probs = stable_softmax(logits=attention_scores, axis=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(inputs=attention_probs, training=training)
# Mask heads if we want to
if head_mask is not None:
attention_probs = tf.multiply(attention_probs, head_mask)
attention_output = tf.matmul(attention_probs, value_layer)
attention_output = tf.transpose(attention_output, perm=[0, 2, 1, 3])
# (batch_size, seq_len_q, all_head_size)
attention_output = tf.reshape(tensor=attention_output, shape=(batch_size, -1, self.all_head_size))
outputs = (attention_output, attention_probs) if output_attentions else (attention_output,)
if self.is_decoder:
outputs = outputs + (past_key_value,)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "query", None) is not None:
with tf.name_scope(self.query.name):
self.query.build([None, None, self.config.hidden_size])
if getattr(self, "key", None) is not None:
with tf.name_scope(self.key.name):
self.key.build([None, None, self.config.hidden_size])
if getattr(self, "value", None) is not None:
with tf.name_scope(self.value.name):
self.value.build([None, None, self.config.hidden_size])
# Copied from transformers.models.bert.modeling_tf_bert.TFBertSelfOutput with Bert->Camembert
class TFCamembertSelfOutput(tf.keras.layers.Layer):
def __init__(self, config: CamembertConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.LayerNorm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.dropout = tf.keras.layers.Dropout(rate=config.hidden_dropout_prob)
self.config = config
def call(self, hidden_states: tf.Tensor, input_tensor: tf.Tensor, training: bool = False) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = self.dropout(inputs=hidden_states, training=training)
hidden_states = self.LayerNorm(inputs=hidden_states + input_tensor)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
if getattr(self, "LayerNorm", None) is not None:
with tf.name_scope(self.LayerNorm.name):
self.LayerNorm.build([None, None, self.config.hidden_size])
# Copied from transformers.models.bert.modeling_tf_bert.TFBertAttention with Bert->Camembert
class TFCamembertAttention(tf.keras.layers.Layer):
def __init__(self, config: CamembertConfig, **kwargs):
super().__init__(**kwargs)
self.self_attention = TFCamembertSelfAttention(config, name="self")
self.dense_output = TFCamembertSelfOutput(config, name="output")
def prune_heads(self, heads):
raise NotImplementedError
def call(
self,
input_tensor: tf.Tensor,
attention_mask: tf.Tensor,
head_mask: tf.Tensor,
encoder_hidden_states: tf.Tensor,
encoder_attention_mask: tf.Tensor,
past_key_value: Tuple[tf.Tensor],
output_attentions: bool,
training: bool = False,
) -> Tuple[tf.Tensor]:
self_outputs = self.self_attention(
hidden_states=input_tensor,
attention_mask=attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
past_key_value=past_key_value,
output_attentions=output_attentions,
training=training,
)
attention_output = self.dense_output(
hidden_states=self_outputs[0], input_tensor=input_tensor, training=training
)
# add attentions (possibly with past_key_value) if we output them
outputs = (attention_output,) + self_outputs[1:]
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "self_attention", None) is not None:
with tf.name_scope(self.self_attention.name):
self.self_attention.build(None)
if getattr(self, "dense_output", None) is not None:
with tf.name_scope(self.dense_output.name):
self.dense_output.build(None)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertIntermediate with Bert->Camembert
class TFCamembertIntermediate(tf.keras.layers.Layer):
def __init__(self, config: CamembertConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.intermediate_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = get_tf_activation(config.hidden_act)
else:
self.intermediate_act_fn = config.hidden_act
self.config = config
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
# Copied from transformers.models.bert.modeling_tf_bert.TFBertOutput with Bert->Camembert
class TFCamembertOutput(tf.keras.layers.Layer):
def __init__(self, config: CamembertConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.LayerNorm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.dropout = tf.keras.layers.Dropout(rate=config.hidden_dropout_prob)
self.config = config
def call(self, hidden_states: tf.Tensor, input_tensor: tf.Tensor, training: bool = False) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = self.dropout(inputs=hidden_states, training=training)
hidden_states = self.LayerNorm(inputs=hidden_states + input_tensor)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.intermediate_size])
if getattr(self, "LayerNorm", None) is not None:
with tf.name_scope(self.LayerNorm.name):
self.LayerNorm.build([None, None, self.config.hidden_size])
# Copied from transformers.models.bert.modeling_tf_bert.TFBertLayer with Bert->Camembert
class TFCamembertLayer(tf.keras.layers.Layer):
def __init__(self, config: CamembertConfig, **kwargs):
super().__init__(**kwargs)
self.attention = TFCamembertAttention(config, name="attention")
self.is_decoder = config.is_decoder
self.add_cross_attention = config.add_cross_attention
if self.add_cross_attention:
if not self.is_decoder:
raise ValueError(f"{self} should be used as a decoder model if cross attention is added")
self.crossattention = TFCamembertAttention(config, name="crossattention")
self.intermediate = TFCamembertIntermediate(config, name="intermediate")
self.bert_output = TFCamembertOutput(config, name="output")
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor,
head_mask: tf.Tensor,
encoder_hidden_states: tf.Tensor | None,
encoder_attention_mask: tf.Tensor | None,
past_key_value: Tuple[tf.Tensor] | None,
output_attentions: bool,
training: bool = False,
) -> Tuple[tf.Tensor]:
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
input_tensor=hidden_states,
attention_mask=attention_mask,
head_mask=head_mask,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=self_attn_past_key_value,
output_attentions=output_attentions,
training=training,
)
attention_output = self_attention_outputs[0]
# if decoder, the last output is tuple of self-attn cache
if self.is_decoder:
outputs = self_attention_outputs[1:-1]
present_key_value = self_attention_outputs[-1]
else:
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
cross_attn_present_key_value = None
if self.is_decoder and encoder_hidden_states is not None:
if not hasattr(self, "crossattention"):
raise ValueError(
f"If `encoder_hidden_states` are passed, {self} has to be instantiated with cross-attention layers"
" by setting `config.add_cross_attention=True`"
)
# cross_attn cached key/values tuple is at positions 3,4 of past_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
cross_attention_outputs = self.crossattention(
input_tensor=attention_output,
attention_mask=attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
past_key_value=cross_attn_past_key_value,
output_attentions=output_attentions,
training=training,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights
# add cross-attn cache to positions 3,4 of present_key_value tuple
cross_attn_present_key_value = cross_attention_outputs[-1]
present_key_value = present_key_value + cross_attn_present_key_value
intermediate_output = self.intermediate(hidden_states=attention_output)
layer_output = self.bert_output(
hidden_states=intermediate_output, input_tensor=attention_output, training=training
)
outputs = (layer_output,) + outputs # add attentions if we output them
# if decoder, return the attn key/values as the last output
if self.is_decoder:
outputs = outputs + (present_key_value,)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "attention", None) is not None:
with tf.name_scope(self.attention.name):
self.attention.build(None)
if getattr(self, "intermediate", None) is not None:
with tf.name_scope(self.intermediate.name):
self.intermediate.build(None)
if getattr(self, "bert_output", None) is not None:
with tf.name_scope(self.bert_output.name):
self.bert_output.build(None)
if getattr(self, "crossattention", None) is not None:
with tf.name_scope(self.crossattention.name):
self.crossattention.build(None)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertEncoder with Bert->Camembert
class TFCamembertEncoder(tf.keras.layers.Layer):
def __init__(self, config: CamembertConfig, **kwargs):
super().__init__(**kwargs)
self.config = config
self.layer = [TFCamembertLayer(config, name=f"layer_._{i}") for i in range(config.num_hidden_layers)]
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor,
head_mask: tf.Tensor,
encoder_hidden_states: tf.Tensor | None,
encoder_attention_mask: tf.Tensor | None,
past_key_values: Tuple[Tuple[tf.Tensor]] | None,
use_cache: Optional[bool],
output_attentions: bool,
output_hidden_states: bool,
return_dict: bool,
training: bool = False,
) -> Union[TFBaseModelOutputWithPastAndCrossAttentions, Tuple[tf.Tensor]]:
all_hidden_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
next_decoder_cache = () if use_cache else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
past_key_value = past_key_values[i] if past_key_values is not None else None
layer_outputs = layer_module(
hidden_states=hidden_states,
attention_mask=attention_mask,
head_mask=head_mask[i],
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
past_key_value=past_key_value,
output_attentions=output_attentions,
training=training,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[-1],)
if output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
if self.config.add_cross_attention and encoder_hidden_states is not None:
all_cross_attentions = all_cross_attentions + (layer_outputs[2],)
# Add last layer
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v for v in [hidden_states, all_hidden_states, all_attentions, all_cross_attentions] if v is not None
)
return TFBaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_attentions,
cross_attentions=all_cross_attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "layer", None) is not None:
for layer in self.layer:
with tf.name_scope(layer.name):
layer.build(None)
@keras_serializable
# Copied from transformers.models.roberta.modeling_tf_roberta.TFRobertaMainLayer with Roberta->Camembert
class TFCamembertMainLayer(tf.keras.layers.Layer):
config_class = CamembertConfig
def __init__(self, config, add_pooling_layer=True, **kwargs):
super().__init__(**kwargs)
self.config = config
self.is_decoder = config.is_decoder
self.num_hidden_layers = config.num_hidden_layers
self.initializer_range = config.initializer_range
self.output_attentions = config.output_attentions
self.output_hidden_states = config.output_hidden_states
self.return_dict = config.use_return_dict
self.encoder = TFCamembertEncoder(config, name="encoder")
self.pooler = TFCamembertPooler(config, name="pooler") if add_pooling_layer else None
# The embeddings must be the last declaration in order to follow the weights order
self.embeddings = TFCamembertEmbeddings(config, name="embeddings")
# Copied from transformers.models.bert.modeling_tf_bert.TFBertMainLayer.get_input_embeddings
def get_input_embeddings(self) -> tf.keras.layers.Layer:
return self.embeddings
# Copied from transformers.models.bert.modeling_tf_bert.TFBertMainLayer.set_input_embeddings
def set_input_embeddings(self, value: tf.Variable):
self.embeddings.weight = value
self.embeddings.vocab_size = shape_list(value)[0]
# Copied from transformers.models.bert.modeling_tf_bert.TFBertMainLayer._prune_heads
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
raise NotImplementedError
@unpack_inputs
# Copied from transformers.models.bert.modeling_tf_bert.TFBertMainLayer.call
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
encoder_hidden_states: np.ndarray | tf.Tensor | None = None,
encoder_attention_mask: np.ndarray | tf.Tensor | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFBaseModelOutputWithPoolingAndCrossAttentions, Tuple[tf.Tensor]]:
if not self.config.is_decoder:
use_cache = False
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = shape_list(input_ids)
elif inputs_embeds is not None:
input_shape = shape_list(inputs_embeds)[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
batch_size, seq_length = input_shape
if past_key_values is None:
past_key_values_length = 0
past_key_values = [None] * len(self.encoder.layer)
else:
past_key_values_length = shape_list(past_key_values[0][0])[-2]
if attention_mask is None:
attention_mask = tf.fill(dims=(batch_size, seq_length + past_key_values_length), value=1)
if token_type_ids is None:
token_type_ids = tf.fill(dims=input_shape, value=0)
embedding_output = self.embeddings(
input_ids=input_ids,
position_ids=position_ids,
token_type_ids=token_type_ids,
inputs_embeds=inputs_embeds,
past_key_values_length=past_key_values_length,
training=training,
)
# We create a 3D attention mask from a 2D tensor mask.
# Sizes are [batch_size, 1, 1, to_seq_length]
# So we can broadcast to [batch_size, num_heads, from_seq_length, to_seq_length]
# this attention mask is more simple than the triangular masking of causal attention
# used in OpenAI GPT, we just need to prepare the broadcast dimension here.
attention_mask_shape = shape_list(attention_mask)
mask_seq_length = seq_length + past_key_values_length
# Copied from `modeling_tf_t5.py`
# Provided a padding mask of dimensions [batch_size, mask_seq_length]
# - if the model is a decoder, apply a causal mask in addition to the padding mask
# - if the model is an encoder, make the mask broadcastable to [batch_size, num_heads, mask_seq_length, mask_seq_length]
if self.is_decoder:
seq_ids = tf.range(mask_seq_length)
causal_mask = tf.less_equal(
tf.tile(seq_ids[None, None, :], (batch_size, mask_seq_length, 1)),
seq_ids[None, :, None],
)
causal_mask = tf.cast(causal_mask, dtype=attention_mask.dtype)
extended_attention_mask = causal_mask * attention_mask[:, None, :]
attention_mask_shape = shape_list(extended_attention_mask)
extended_attention_mask = tf.reshape(
extended_attention_mask, (attention_mask_shape[0], 1, attention_mask_shape[1], attention_mask_shape[2])
)
if past_key_values[0] is not None:
# attention_mask needs to be sliced to the shape `[batch_size, 1, from_seq_length - cached_seq_length, to_seq_length]
extended_attention_mask = extended_attention_mask[:, :, -seq_length:, :]
else:
extended_attention_mask = tf.reshape(
attention_mask, (attention_mask_shape[0], 1, 1, attention_mask_shape[1])
)
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and -10000.0 for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
extended_attention_mask = tf.cast(extended_attention_mask, dtype=embedding_output.dtype)
one_cst = tf.constant(1.0, dtype=embedding_output.dtype)
ten_thousand_cst = tf.constant(-10000.0, dtype=embedding_output.dtype)
extended_attention_mask = tf.multiply(tf.subtract(one_cst, extended_attention_mask), ten_thousand_cst)
# Copied from `modeling_tf_t5.py` with -1e9 -> -10000
if self.is_decoder and encoder_attention_mask is not None:
# If a 2D ou 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, mask_seq_length, mask_seq_length]
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
encoder_attention_mask = tf.cast(encoder_attention_mask, dtype=extended_attention_mask.dtype)
num_dims_encoder_attention_mask = len(shape_list(encoder_attention_mask))
if num_dims_encoder_attention_mask == 3:
encoder_extended_attention_mask = encoder_attention_mask[:, None, :, :]
if num_dims_encoder_attention_mask == 2:
encoder_extended_attention_mask = encoder_attention_mask[:, None, None, :]
# T5 has a mask that can compare sequence ids, we can simulate this here with this transposition
# Cf. https://github.com/tensorflow/mesh/blob/8d2465e9bc93129b913b5ccc6a59aa97abd96ec6/mesh_tensorflow/transformer/transformer_layers.py#L270
# encoder_extended_attention_mask = tf.math.equal(encoder_extended_attention_mask,
# tf.transpose(encoder_extended_attention_mask, perm=(-1, -2)))
encoder_extended_attention_mask = (1.0 - encoder_extended_attention_mask) * -10000.0
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
if head_mask is not None:
raise NotImplementedError
else:
head_mask = [None] * self.config.num_hidden_layers
encoder_outputs = self.encoder(
hidden_states=embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(hidden_states=sequence_output) if self.pooler is not None else None
if not return_dict:
return (
sequence_output,
pooled_output,
) + encoder_outputs[1:]
return TFBaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "encoder", None) is not None:
with tf.name_scope(self.encoder.name):
self.encoder.build(None)
if getattr(self, "pooler", None) is not None:
with tf.name_scope(self.pooler.name):
self.pooler.build(None)
if getattr(self, "embeddings", None) is not None:
with tf.name_scope(self.embeddings.name):
self.embeddings.build(None)
class TFCamembertPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = CamembertConfig
base_model_prefix = "roberta"
@add_start_docstrings(
"The bare CamemBERT Model transformer outputting raw hidden-states without any specific head on top.",
CAMEMBERT_START_DOCSTRING,
)
# Copied from transformers.models.roberta.modeling_tf_roberta.TFRobertaModel with Roberta->Camembert, ROBERTA->CAMEMBERT
class TFCamembertModel(TFCamembertPreTrainedModel):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.roberta = TFCamembertMainLayer(config, name="roberta")
@unpack_inputs
@add_start_docstrings_to_model_forward(CAMEMBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFBaseModelOutputWithPoolingAndCrossAttentions,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
encoder_hidden_states: np.ndarray | tf.Tensor | None = None,
encoder_attention_mask: np.ndarray | tf.Tensor | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[Tuple, TFBaseModelOutputWithPoolingAndCrossAttentions]:
r"""
encoder_hidden_states (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
past_key_values (`Tuple[Tuple[tf.Tensor]]` of length `config.n_layers`)
contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*, defaults to `True`):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`). Set to `False` during training, `True` during generation
"""
outputs = self.roberta(
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "roberta", None) is not None:
with tf.name_scope(self.roberta.name):
self.roberta.build(None)
# Copied from transformers.models.roberta.modeling_tf_roberta.TFRobertaLMHead with Roberta->Camembert
class TFCamembertLMHead(tf.keras.layers.Layer):
"""Camembert Head for masked language modeling."""
def __init__(self, config, input_embeddings, **kwargs):
super().__init__(**kwargs)
self.config = config
self.hidden_size = config.hidden_size
self.dense = tf.keras.layers.Dense(
config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.layer_norm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm")
self.act = get_tf_activation("gelu")
# The output weights are the same as the input embeddings, but there is
# an output-only bias for each token.
self.decoder = input_embeddings
def build(self, input_shape=None):
self.bias = self.add_weight(shape=(self.config.vocab_size,), initializer="zeros", trainable=True, name="bias")
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.config.hidden_size])
def get_output_embeddings(self):
return self.decoder
def set_output_embeddings(self, value):
self.decoder.weight = value
self.decoder.vocab_size = shape_list(value)[0]
def get_bias(self):
return {"bias": self.bias}
def set_bias(self, value):
self.bias = value["bias"]
self.config.vocab_size = shape_list(value["bias"])[0]
def call(self, hidden_states):
hidden_states = self.dense(hidden_states)
hidden_states = self.act(hidden_states)
hidden_states = self.layer_norm(hidden_states)
# project back to size of vocabulary with bias
seq_length = shape_list(tensor=hidden_states)[1]
hidden_states = tf.reshape(tensor=hidden_states, shape=[-1, self.hidden_size])
hidden_states = tf.matmul(a=hidden_states, b=self.decoder.weight, transpose_b=True)
hidden_states = tf.reshape(tensor=hidden_states, shape=[-1, seq_length, self.config.vocab_size])
hidden_states = tf.nn.bias_add(value=hidden_states, bias=self.bias)
return hidden_states
@add_start_docstrings(
"""CamemBERT Model with a `language modeling` head on top.""",
CAMEMBERT_START_DOCSTRING,
)
# Copied from transformers.models.roberta.modeling_tf_roberta.TFRobertaForMaskedLM with Roberta->Camembert, ROBERTA->CAMEMBERT
class TFCamembertForMaskedLM(TFCamembertPreTrainedModel, TFMaskedLanguageModelingLoss):
# names with a '.' represents the authorized unexpected/missing layers when a TF model is loaded from a PT model
_keys_to_ignore_on_load_unexpected = [r"pooler", r"lm_head.decoder.weight"]
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.roberta = TFCamembertMainLayer(config, add_pooling_layer=False, name="roberta")
self.lm_head = TFCamembertLMHead(config, self.roberta.embeddings, name="lm_head")
def get_lm_head(self):
return self.lm_head
def get_prefix_bias_name(self):
warnings.warn("The method get_prefix_bias_name is deprecated. Please use `get_bias` instead.", FutureWarning)
return self.name + "/" + self.lm_head.name
@unpack_inputs
@add_start_docstrings_to_model_forward(CAMEMBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFMaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
mask="<mask>",
expected_output="' Paris'",
expected_loss=0.1,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[TFMaskedLMOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
"""
outputs = self.roberta(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
prediction_scores = self.lm_head(sequence_output)
loss = None if labels is None else self.hf_compute_loss(labels, prediction_scores)
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFMaskedLMOutput(
loss=loss,
logits=prediction_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "roberta", None) is not None:
with tf.name_scope(self.roberta.name):
self.roberta.build(None)
if getattr(self, "lm_head", None) is not None:
with tf.name_scope(self.lm_head.name):
self.lm_head.build(None)
# Copied from transformers.models.roberta.modeling_tf_roberta.TFRobertaClassificationHead
class TFCamembertClassificationHead(tf.keras.layers.Layer):
"""Head for sentence-level classification tasks."""
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
activation="tanh",
name="dense",
)
classifier_dropout = (
config.classifier_dropout if config.classifier_dropout is not None else config.hidden_dropout_prob
)
self.dropout = tf.keras.layers.Dropout(classifier_dropout)
self.out_proj = tf.keras.layers.Dense(
config.num_labels, kernel_initializer=get_initializer(config.initializer_range), name="out_proj"
)
self.config = config
def call(self, features, training=False):
x = features[:, 0, :] # take <s> token (equiv. to [CLS])
x = self.dropout(x, training=training)
x = self.dense(x)
x = self.dropout(x, training=training)
x = self.out_proj(x)
return x
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
if getattr(self, "out_proj", None) is not None:
with tf.name_scope(self.out_proj.name):
self.out_proj.build([None, None, self.config.hidden_size])
@add_start_docstrings(
"""
CamemBERT Model transformer with a sequence classification/regression head on top (a linear layer on top of the
pooled output) e.g. for GLUE tasks.
""",
CAMEMBERT_START_DOCSTRING,
)
# Copied from transformers.models.roberta.modeling_tf_roberta.TFRobertaForSequenceClassification with Roberta->Camembert, ROBERTA->CAMEMBERT
class TFCamembertForSequenceClassification(TFCamembertPreTrainedModel, TFSequenceClassificationLoss):
# names with a '.' represents the authorized unexpected/missing layers when a TF model is loaded from a PT model
_keys_to_ignore_on_load_unexpected = [r"pooler", r"lm_head"]
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.roberta = TFCamembertMainLayer(config, add_pooling_layer=False, name="roberta")
self.classifier = TFCamembertClassificationHead(config, name="classifier")
@unpack_inputs
@add_start_docstrings_to_model_forward(CAMEMBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint="cardiffnlp/twitter-roberta-base-emotion",
output_type=TFSequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
expected_output="'optimism'",
expected_loss=0.08,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[TFSequenceClassifierOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
outputs = self.roberta(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
logits = self.classifier(sequence_output, training=training)
loss = None if labels is None else self.hf_compute_loss(labels, logits)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFSequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "roberta", None) is not None:
with tf.name_scope(self.roberta.name):
self.roberta.build(None)
if getattr(self, "classifier", None) is not None:
with tf.name_scope(self.classifier.name):
self.classifier.build(None)
@add_start_docstrings(
"""
CamemBERT Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g.
for Named-Entity-Recognition (NER) tasks.
""",
CAMEMBERT_START_DOCSTRING,
)
# Copied from transformers.models.roberta.modeling_tf_roberta.TFRobertaForTokenClassification with Roberta->Camembert, ROBERTA->CAMEMBERT
class TFCamembertForTokenClassification(TFCamembertPreTrainedModel, TFTokenClassificationLoss):
# names with a '.' represents the authorized unexpected/missing layers when a TF model is loaded from a PT model
_keys_to_ignore_on_load_unexpected = [r"pooler", r"lm_head"]
_keys_to_ignore_on_load_missing = [r"dropout"]
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.roberta = TFCamembertMainLayer(config, add_pooling_layer=False, name="roberta")
classifier_dropout = (
config.classifier_dropout if config.classifier_dropout is not None else config.hidden_dropout_prob
)
self.dropout = tf.keras.layers.Dropout(classifier_dropout)
self.classifier = tf.keras.layers.Dense(
config.num_labels, kernel_initializer=get_initializer(config.initializer_range), name="classifier"
)
self.config = config
@unpack_inputs
@add_start_docstrings_to_model_forward(CAMEMBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint="ydshieh/roberta-large-ner-english",
output_type=TFTokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
expected_output="['O', 'ORG', 'ORG', 'O', 'O', 'O', 'O', 'O', 'LOC', 'O', 'LOC', 'LOC']",
expected_loss=0.01,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[TFTokenClassifierOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
outputs = self.roberta(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output, training=training)
logits = self.classifier(sequence_output)
loss = None if labels is None else self.hf_compute_loss(labels, logits)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFTokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "roberta", None) is not None:
with tf.name_scope(self.roberta.name):
self.roberta.build(None)
if getattr(self, "classifier", None) is not None:
with tf.name_scope(self.classifier.name):
self.classifier.build([None, None, self.config.hidden_size])
@add_start_docstrings(
"""
CamemBERT Model with a multiple choice classification head on top (a linear layer on top of the pooled output and a
softmax) e.g. for RocStories/SWAG tasks.
""",
CAMEMBERT_START_DOCSTRING,
)
# Copied from transformers.models.roberta.modeling_tf_roberta.TFRobertaForMultipleChoice with Roberta->Camembert, ROBERTA->CAMEMBERT
class TFCamembertForMultipleChoice(TFCamembertPreTrainedModel, TFMultipleChoiceLoss):
# names with a '.' represents the authorized unexpected/missing layers when a TF model is loaded from a PT model
_keys_to_ignore_on_load_unexpected = [r"lm_head"]
_keys_to_ignore_on_load_missing = [r"dropout"]
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.roberta = TFCamembertMainLayer(config, name="roberta")
self.dropout = tf.keras.layers.Dropout(config.hidden_dropout_prob)
self.classifier = tf.keras.layers.Dense(
1, kernel_initializer=get_initializer(config.initializer_range), name="classifier"
)
self.config = config
@unpack_inputs
@add_start_docstrings_to_model_forward(
CAMEMBERT_INPUTS_DOCSTRING.format("batch_size, num_choices, sequence_length")
)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFMultipleChoiceModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[TFMultipleChoiceModelOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size,)`, *optional*):
Labels for computing the multiple choice classification loss. Indices should be in `[0, ..., num_choices]`
where `num_choices` is the size of the second dimension of the input tensors. (See `input_ids` above)
"""
if input_ids is not None:
num_choices = shape_list(input_ids)[1]
seq_length = shape_list(input_ids)[2]
else:
num_choices = shape_list(inputs_embeds)[1]
seq_length = shape_list(inputs_embeds)[2]
flat_input_ids = tf.reshape(input_ids, (-1, seq_length)) if input_ids is not None else None
flat_attention_mask = tf.reshape(attention_mask, (-1, seq_length)) if attention_mask is not None else None
flat_token_type_ids = tf.reshape(token_type_ids, (-1, seq_length)) if token_type_ids is not None else None
flat_position_ids = tf.reshape(position_ids, (-1, seq_length)) if position_ids is not None else None
outputs = self.roberta(
flat_input_ids,
flat_attention_mask,
flat_token_type_ids,
flat_position_ids,
head_mask,
inputs_embeds,
output_attentions,
output_hidden_states,
return_dict=return_dict,
training=training,
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output, training=training)
logits = self.classifier(pooled_output)
reshaped_logits = tf.reshape(logits, (-1, num_choices))
loss = None if labels is None else self.hf_compute_loss(labels, reshaped_logits)
if not return_dict:
output = (reshaped_logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFMultipleChoiceModelOutput(
loss=loss,
logits=reshaped_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "roberta", None) is not None:
with tf.name_scope(self.roberta.name):
self.roberta.build(None)
if getattr(self, "classifier", None) is not None:
with tf.name_scope(self.classifier.name):
self.classifier.build([None, None, self.config.hidden_size])
@add_start_docstrings(
"""
CamemBERT Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear
layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
CAMEMBERT_START_DOCSTRING,
)
# Copied from transformers.models.roberta.modeling_tf_roberta.TFRobertaForQuestionAnswering with Roberta->Camembert, ROBERTA->CAMEMBERT
class TFCamembertForQuestionAnswering(TFCamembertPreTrainedModel, TFQuestionAnsweringLoss):
# names with a '.' represents the authorized unexpected/missing layers when a TF model is loaded from a PT model
_keys_to_ignore_on_load_unexpected = [r"pooler", r"lm_head"]
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.roberta = TFCamembertMainLayer(config, add_pooling_layer=False, name="roberta")
self.qa_outputs = tf.keras.layers.Dense(
config.num_labels, kernel_initializer=get_initializer(config.initializer_range), name="qa_outputs"
)
self.config = config
@unpack_inputs
@add_start_docstrings_to_model_forward(CAMEMBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint="ydshieh/roberta-base-squad2",
output_type=TFQuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
expected_output="' puppet'",
expected_loss=0.86,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
start_positions: np.ndarray | tf.Tensor | None = None,
end_positions: np.ndarray | tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[TFQuestionAnsweringModelOutput, Tuple[tf.Tensor]]:
r"""
start_positions (`tf.Tensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`tf.Tensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
"""
outputs = self.roberta(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = tf.split(logits, 2, axis=-1)
start_logits = tf.squeeze(start_logits, axis=-1)
end_logits = tf.squeeze(end_logits, axis=-1)
loss = None
if start_positions is not None and end_positions is not None:
labels = {"start_position": start_positions}
labels["end_position"] = end_positions
loss = self.hf_compute_loss(labels, (start_logits, end_logits))
if not return_dict:
output = (start_logits, end_logits) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFQuestionAnsweringModelOutput(
loss=loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "roberta", None) is not None:
with tf.name_scope(self.roberta.name):
self.roberta.build(None)
if getattr(self, "qa_outputs", None) is not None:
with tf.name_scope(self.qa_outputs.name):
self.qa_outputs.build([None, None, self.config.hidden_size])
@add_start_docstrings(
"""CamemBERT Model with a `language modeling` head on top for CLM fine-tuning.""", CAMEMBERT_START_DOCSTRING
)
# Copied from transformers.models.roberta.modeling_tf_roberta.TFRobertaForCausalLM with Roberta->Camembert, ROBERTA->CAMEMBERT
class TFCamembertForCausalLM(TFCamembertPreTrainedModel, TFCausalLanguageModelingLoss):
# names with a '.' represents the authorized unexpected/missing layers when a TF model is loaded from a PT model
_keys_to_ignore_on_load_unexpected = [r"pooler", r"lm_head.decoder.weight"]
def __init__(self, config: CamembertConfig, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
if not config.is_decoder:
logger.warning("If you want to use `TFCamembertLMHeadModel` as a standalone, add `is_decoder=True.`")
self.roberta = TFCamembertMainLayer(config, add_pooling_layer=False, name="roberta")
self.lm_head = TFCamembertLMHead(config, input_embeddings=self.roberta.embeddings, name="lm_head")
def get_lm_head(self):
return self.lm_head
def get_prefix_bias_name(self):
warnings.warn("The method get_prefix_bias_name is deprecated. Please use `get_bias` instead.", FutureWarning)
return self.name + "/" + self.lm_head.name
# Copied from transformers.models.bert.modeling_tf_bert.TFBertLMHeadModel.prepare_inputs_for_generation
def prepare_inputs_for_generation(self, input_ids, past_key_values=None, attention_mask=None, **model_kwargs):
input_shape = input_ids.shape
# if model is used as a decoder in encoder-decoder model, the decoder attention mask is created on the fly
if attention_mask is None:
attention_mask = tf.ones(input_shape)
# cut decoder_input_ids if past is used
if past_key_values is not None:
input_ids = input_ids[:, -1:]
return {"input_ids": input_ids, "attention_mask": attention_mask, "past_key_values": past_key_values}
@unpack_inputs
@add_start_docstrings_to_model_forward(CAMEMBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFCausalLMOutputWithCrossAttentions,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
encoder_hidden_states: np.ndarray | tf.Tensor | None = None,
encoder_attention_mask: np.ndarray | tf.Tensor | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[TFCausalLMOutputWithCrossAttentions, Tuple[tf.Tensor]]:
r"""
encoder_hidden_states (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
past_key_values (`Tuple[Tuple[tf.Tensor]]` of length `config.n_layers`)
contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*, defaults to `True`):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`). Set to `False` during training, `True` during generation
labels (`tf.Tensor` or `np.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the cross entropy classification loss. Indices should be in `[0, ...,
config.vocab_size - 1]`.
"""
outputs = self.roberta(
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
logits = self.lm_head(hidden_states=sequence_output, training=training)
loss = None
if labels is not None:
# shift labels to the left and cut last logit token
shifted_logits = logits[:, :-1]
labels = labels[:, 1:]
loss = self.hf_compute_loss(labels=labels, logits=shifted_logits)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFCausalLMOutputWithCrossAttentions(
loss=loss,
logits=logits,
past_key_values=outputs.past_key_values,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "roberta", None) is not None:
with tf.name_scope(self.roberta.name):
self.roberta.build(None)
if getattr(self, "lm_head", None) is not None:
with tf.name_scope(self.lm_head.name):
self.lm_head.build(None)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/camembert/configuration_camembert.py | # coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" CamemBERT configuration"""
from collections import OrderedDict
from typing import Mapping
from ...configuration_utils import PretrainedConfig
from ...onnx import OnnxConfig
from ...utils import logging
logger = logging.get_logger(__name__)
CAMEMBERT_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"camembert-base": "https://huggingface.co/camembert-base/resolve/main/config.json",
"umberto-commoncrawl-cased-v1": (
"https://huggingface.co/Musixmatch/umberto-commoncrawl-cased-v1/resolve/main/config.json"
),
"umberto-wikipedia-uncased-v1": (
"https://huggingface.co/Musixmatch/umberto-wikipedia-uncased-v1/resolve/main/config.json"
),
}
class CamembertConfig(PretrainedConfig):
"""
This is the configuration class to store the configuration of a [`CamembertModel`] or a [`TFCamembertModel`]. It is
used to instantiate a Camembert model according to the specified arguments, defining the model architecture.
Instantiating a configuration with the defaults will yield a similar configuration to that of the Camembert
[camembert-base](https://huggingface.co/camembert-base) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 30522):
Vocabulary size of the BERT model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`CamembertModel`] or [`TFCamembertModel`].
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (often named feed-forward) layer in the Transformer encoder.
hidden_act (`str` or `Callable`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"silu"` and `"gelu_new"` are supported.
hidden_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention probabilities.
max_position_embeddings (`int`, *optional*, defaults to 512):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
type_vocab_size (`int`, *optional*, defaults to 2):
The vocabulary size of the `token_type_ids` passed when calling [`CamembertModel`] or [`TFCamembertModel`].
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
position_embedding_type (`str`, *optional*, defaults to `"absolute"`):
Type of position embedding. Choose one of `"absolute"`, `"relative_key"`, `"relative_key_query"`. For
positional embeddings use `"absolute"`. For more information on `"relative_key"`, please refer to
[Self-Attention with Relative Position Representations (Shaw et al.)](https://arxiv.org/abs/1803.02155).
For more information on `"relative_key_query"`, please refer to *Method 4* in [Improve Transformer Models
with Better Relative Position Embeddings (Huang et al.)](https://arxiv.org/abs/2009.13658).
is_decoder (`bool`, *optional*, defaults to `False`):
Whether the model is used as a decoder or not. If `False`, the model is used as an encoder.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models). Only
relevant if `config.is_decoder=True`.
classifier_dropout (`float`, *optional*):
The dropout ratio for the classification head.
Example:
```python
>>> from transformers import CamembertConfig, CamembertModel
>>> # Initializing a Camembert camembert-base style configuration
>>> configuration = CamembertConfig()
>>> # Initializing a model (with random weights) from the camembert-base style configuration
>>> model = CamembertModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "camembert"
def __init__(
self,
vocab_size=30522,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
intermediate_size=3072,
hidden_act="gelu",
hidden_dropout_prob=0.1,
attention_probs_dropout_prob=0.1,
max_position_embeddings=512,
type_vocab_size=2,
initializer_range=0.02,
layer_norm_eps=1e-12,
pad_token_id=1,
bos_token_id=0,
eos_token_id=2,
position_embedding_type="absolute",
use_cache=True,
classifier_dropout=None,
**kwargs,
):
super().__init__(pad_token_id=pad_token_id, bos_token_id=bos_token_id, eos_token_id=eos_token_id, **kwargs)
self.vocab_size = vocab_size
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.hidden_act = hidden_act
self.intermediate_size = intermediate_size
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.max_position_embeddings = max_position_embeddings
self.type_vocab_size = type_vocab_size
self.initializer_range = initializer_range
self.layer_norm_eps = layer_norm_eps
self.position_embedding_type = position_embedding_type
self.use_cache = use_cache
self.classifier_dropout = classifier_dropout
class CamembertOnnxConfig(OnnxConfig):
@property
def inputs(self) -> Mapping[str, Mapping[int, str]]:
if self.task == "multiple-choice":
dynamic_axis = {0: "batch", 1: "choice", 2: "sequence"}
else:
dynamic_axis = {0: "batch", 1: "sequence"}
return OrderedDict(
[
("input_ids", dynamic_axis),
("attention_mask", dynamic_axis),
]
)
| 0 |
hf_public_repos/transformers/src/transformers/models | hf_public_repos/transformers/src/transformers/models/camembert/tokenization_camembert.py | # coding=utf-8
# Copyright 2018 Google AI, Google Brain and Carnegie Mellon University Authors and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License
""" Tokenization classes for Camembert model."""
import os
from shutil import copyfile
from typing import Any, Dict, List, Optional, Tuple
import sentencepiece as spm
from ...tokenization_utils import AddedToken, PreTrainedTokenizer
from ...utils import logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "sentencepiece.bpe.model"}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {
"camembert-base": "https://huggingface.co/camembert-base/resolve/main/sentencepiece.bpe.model",
}
}
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {
"camembert-base": 512,
}
SPIECE_UNDERLINE = "▁"
class CamembertTokenizer(PreTrainedTokenizer):
"""
Adapted from [`RobertaTokenizer`] and [`XLNetTokenizer`]. Construct a CamemBERT tokenizer. Based on
[SentencePiece](https://github.com/google/sentencepiece).
This tokenizer inherits from [`PreTrainedTokenizer`] which contains most of the main methods. Users should refer to
this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
[SentencePiece](https://github.com/google/sentencepiece) file (generally has a *.spm* extension) that
contains the vocabulary necessary to instantiate a tokenizer.
bos_token (`str`, *optional*, defaults to `"<s>"`):
The beginning of sequence token that was used during pretraining. Can be used a sequence classifier token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the beginning of
sequence. The token used is the `cls_token`.
</Tip>
eos_token (`str`, *optional*, defaults to `"</s>"`):
The end of sequence token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the end of sequence.
The token used is the `sep_token`.
</Tip>
sep_token (`str`, *optional*, defaults to `"</s>"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
cls_token (`str`, *optional*, defaults to `"<s>"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
mask_token (`str`, *optional*, defaults to `"<mask>"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
additional_special_tokens (`List[str]`, *optional*, defaults to `['<s>NOTUSED', '</s>NOTUSED', '<unk>NOTUSED']`):
Additional special tokens used by the tokenizer.
sp_model_kwargs (`dict`, *optional*):
Will be passed to the `SentencePieceProcessor.__init__()` method. The [Python wrapper for
SentencePiece](https://github.com/google/sentencepiece/tree/master/python) can be used, among other things,
to set:
- `enable_sampling`: Enable subword regularization.
- `nbest_size`: Sampling parameters for unigram. Invalid for BPE-Dropout.
- `nbest_size = {0,1}`: No sampling is performed.
- `nbest_size > 1`: samples from the nbest_size results.
- `nbest_size < 0`: assuming that nbest_size is infinite and samples from the all hypothesis (lattice)
using forward-filtering-and-backward-sampling algorithm.
- `alpha`: Smoothing parameter for unigram sampling, and dropout probability of merge operations for
BPE-dropout.
Attributes:
sp_model (`SentencePieceProcessor`):
The *SentencePiece* processor that is used for every conversion (string, tokens and IDs).
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
model_input_names = ["input_ids", "attention_mask"]
def __init__(
self,
vocab_file,
bos_token="<s>",
eos_token="</s>",
sep_token="</s>",
cls_token="<s>",
unk_token="<unk>",
pad_token="<pad>",
mask_token="<mask>",
additional_special_tokens=["<s>NOTUSED", "</s>NOTUSED", "<unk>NOTUSED"],
sp_model_kwargs: Optional[Dict[str, Any]] = None,
**kwargs,
) -> None:
# Mask token behave like a normal word, i.e. include the space before it
mask_token = (
AddedToken(mask_token, lstrip=True, rstrip=False, normalized=False, special=True)
if isinstance(mask_token, str)
else mask_token
)
self.sp_model_kwargs = {} if sp_model_kwargs is None else sp_model_kwargs
self.sp_model = spm.SentencePieceProcessor(**self.sp_model_kwargs)
self.sp_model.Load(str(vocab_file))
self.vocab_file = vocab_file
# HACK: These tokens were added by the author for an obscure reason as they were already part of the
# sentencepiece vocabulary (this is the case for <s> and </s> and <unk>).
# In this case it is recommended to properly set the tokens by hand.
self._added_tokens_decoder = {
0: AddedToken("<s>NOTUSED", special=True),
1: AddedToken(pad_token, special=True) if isinstance(pad_token, str) else pad_token,
2: AddedToken("</s>NOTUSED", special=True),
3: AddedToken(unk_token, special=True) if isinstance(unk_token, str) else unk_token,
4: AddedToken("<unk>NOTUSED", special=True),
}
self.fairseq_offset = 4 # 3 tokens are newly added, but the offset starts from 4
# legacy: camemebert is a particular case were we have to make sure `"<unk>NOTUSED"` is here
if "added_tokens_decoder" in kwargs:
# this is the only class that requires this unfortunately.....
# the reason is that the fast version has a whole.
kwargs["added_tokens_decoder"].update(self._added_tokens_decoder)
super().__init__(
bos_token=bos_token,
eos_token=eos_token,
unk_token=unk_token,
sep_token=sep_token,
cls_token=cls_token,
pad_token=pad_token,
mask_token=mask_token,
additional_special_tokens=additional_special_tokens,
sp_model_kwargs=self.sp_model_kwargs,
**kwargs,
)
@property
def vocab_size(self):
# The length of the vocabulary without added tokens is len(self.sp_model) but the added tokens are added at the beginning.
return len(self.sp_model)
def get_vocab(self):
vocab = {self.convert_ids_to_tokens(i): i for i in range(self.vocab_size + self.fairseq_offset)}
vocab.update(self.added_tokens_encoder)
return vocab
def _tokenize(self, text: str) -> List[str]:
return self.sp_model.encode(text, out_type=str)
def _convert_token_to_id(self, token):
"""Converts a token (str) in an id using the vocab."""
# specifi to camembert, both 3 and 4 point to the unk token.
if self.sp_model.PieceToId(token) == 0:
# Convert sentence piece unk token to fairseq unk token index
return self.unk_token_id
return self.fairseq_offset + self.sp_model.PieceToId(token)
def _convert_id_to_token(self, index):
"""Converts an index (integer) in a token (str) using the vocab."""
return self.sp_model.IdToPiece(index - self.fairseq_offset)
def convert_tokens_to_string(self, tokens):
"""Converts a sequence of tokens (string) in a single string."""
# TODO decode outputs do not match between fast and slow
current_sub_tokens = []
out_string = ""
prev_is_special = False
for token in tokens:
# make sure that special tokens are not decoded using sentencepiece model
if token in self.all_special_tokens:
if not prev_is_special:
out_string += " "
out_string += self.sp_model.decode(current_sub_tokens) + token
prev_is_special = True
current_sub_tokens = []
else:
current_sub_tokens.append(token)
prev_is_special = False
out_string += self.sp_model.decode(current_sub_tokens)
return out_string.strip()
def __getstate__(self):
state = self.__dict__.copy()
state["sp_model"] = None
return state
def __setstate__(self, d):
self.__dict__ = d
# for backward compatibility
if not hasattr(self, "sp_model_kwargs"):
self.sp_model_kwargs = {}
self.sp_model = spm.SentencePieceProcessor(**self.sp_model_kwargs)
self.sp_model.Load(self.vocab_file)
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory")
return
out_vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
if os.path.abspath(self.vocab_file) != os.path.abspath(out_vocab_file) and os.path.isfile(self.vocab_file):
copyfile(self.vocab_file, out_vocab_file)
elif not os.path.isfile(self.vocab_file):
with open(out_vocab_file, "wb") as fi:
content_spiece_model = self.sp_model.serialized_model_proto()
fi.write(content_spiece_model)
return (out_vocab_file,)
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. An CamemBERT sequence has the following format:
- single sequence: `<s> X </s>`
- pair of sequences: `<s> A </s></s> B </s>`
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
if token_ids_1 is None:
return [self.cls_token_id] + token_ids_0 + [self.sep_token_id]
cls = [self.cls_token_id]
sep = [self.sep_token_id]
return cls + token_ids_0 + sep + sep + token_ids_1 + sep
def get_special_tokens_mask(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieve sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer `prepare_for_model` method.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
already_has_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
`List[int]`: A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
return super().get_special_tokens_mask(
token_ids_0=token_ids_0, token_ids_1=token_ids_1, already_has_special_tokens=True
)
if token_ids_1 is None:
return [1] + ([0] * len(token_ids_0)) + [1]
return [1] + ([0] * len(token_ids_0)) + [1, 1] + ([0] * len(token_ids_1)) + [1]
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. CamemBERT, like
RoBERTa, does not make use of token type ids, therefore a list of zeros is returned.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of zeros.
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return len(cls + token_ids_0 + sep) * [0]
return len(cls + token_ids_0 + sep + sep + token_ids_1 + sep) * [0]
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