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assemble_data.py

@@ -54,11 +54,18 @@ def assemble_data(input_dir, output_file):
                 variable = nc.variables[nc_file.split("_")[0]]
                 out_nc[nc_file.split("_")[0]][samples[i] : samples[i + 1]] = variable[:]
         
-        for i, c_file in enumerate(c_files):
-            with Dataset(os.path.join(input_dir, c_file), "r") as nc:
-                print(f"Processing {os.path.join(input_dir, c_file)}")
-                variable = nc.variables[c_file.split("_")[0]]
-                out_nc[c_file.split("_")[0]][samples[i] : samples[i + 1]] = variable[:]
+    samples = [0]
+    for nc_file in c_files[]:
+        with Dataset(os.path.join(input_dir, nc_file), "r") as nc:
+            samples.append(nc.dimensions["sample"].size)
+    for i in range(1, len(samples)):
+        samples[i] += samples[i - 1]
+    
+    for i, c_file in enumerate(c_files):
+        with Dataset(os.path.join(input_dir, c_file), "r") as nc:
+            print(f"Processing {os.path.join(input_dir, c_file)}")
+            variable = nc.variables[c_file.split("_")[0]]
+            out_nc[c_file.split("_")[0]][samples[i] : samples[i + 1]] = variable[:]
 
     print(f"Saved data to {output_file}")