""" Upload Cannabis Analytes Copyright (c) 2023 Cannlytics Authors: Keegan Skeate Created: 10/10/2023 Updated: 10/10/2023 License: Data Source: - [Cannabis Licenses](https://huggingface.co/datasets/cannlytics/cannabis_analytes) Command-line Usage: python datasets/cannabis_analytes/upload_cannabis_analytes.py all """ # Standard imports: import os # External imports: from cannlytics import firebase from datasets import load_dataset from dotenv import dotenv_values import pandas as pd def upload_cannabis_analytes( subset: str = 'all', col: str = 'public/data/analytes', repo: str = 'cannlytics/cannabis_analytes', doc_id_key: str = 'key', verbose: bool = True, ): """Upload cannabis analytes data to Firestore. Args: subset (str): The subset of the Hugging Face data, `all` by default. col (str): The Firestore base document where the data should be saved. repo (str): The Hugging Face dataset repository. doc_id_key (str): The field of the document to use as a document ID. verbose (bool): Whether to print out progress. """ # Initialize Firebase. db = firebase.initialize_firebase() # Get the data from local storage. try: if subset == 'all': subset = 'analytes' data = pd.read_json(f'data/{subset}.json') if verbose: print('Loaded %i documents from local storage.' % len(data)) # Get the data from Hugging Face. except: dataset = load_dataset(repo, subset) data = dataset['data'].to_pandas() if verbose: print('Loaded %i documents from Hugging Face.' % len(data)) # Compile the references and documents. refs, docs = [], [] for _, row in data.iterrows(): doc_id = row[doc_id_key] obs = row.to_dict() refs.append(f'{col}/{doc_id}') docs.append(obs) # Upload the data to Firestore. firebase.update_documents(refs, docs, database=db) if verbose: print('Uploaded %i documents to Firestore.' % len(docs)) return docs # === Test === if __name__ == '__main__': # Set Firebase credentials. try: config = dotenv_values('../../.env') credentials = config['GOOGLE_APPLICATION_CREDENTIALS'] except KeyError: config = dotenv_values('./.env') credentials = config['GOOGLE_APPLICATION_CREDENTIALS'] os.environ['GOOGLE_APPLICATION_CREDENTIALS'] = credentials # Get any subset specified from the command line. import sys try: subset = sys.argv[1] if subset.startswith('--ip'): subset = 'all' except KeyError: subset = 'all' # Upload Firestore with cannabis license data. analytes = upload_cannabis_analytes(subset=subset, verbose=True) print('Uploaded %i analyte data to Firestore.' % len(analytes))