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README.md
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size_categories:
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- 10K<n<100K
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# PAX-Ray++ Dataset
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The **PAX-Ray++ Dataset** is a high-quality dataset designed to facilitate segmentation tasks for anatomical structures in chest radiographs. By leveraging pseudo-labeled thorax CT scans projected onto a 2D plane, this dataset provides fine-grained annotations resembling traditional X-ray imaging. This enables the development and evaluation of models tailored to anatomical segmentation in medical imaging.
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## Key Features
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- **Large Dataset**: Contains **7,377 frontal and lateral view images**, each carefully pseudo-labeled.
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- **Fine-Grained Annotation**: Offers annotations for **157 distinct anatomical classes**, ensuring comprehensive coverage of thoracic anatomy.
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- **Extensive Instances**: Includes **over 2 million annotated instances**, providing a robust foundation for training and evaluation.
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- **2D Projection of 3D Data**: Combines the richness of 3D CT data with the accessibility of 2D radiographic images.
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## Applications
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The PAX-Ray++ dataset is designed to support:
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- Anatomical segmentation in chest X-rays.
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- Development of machine learning models for medical imaging tasks.
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- Research on transfer learning between CT-derived and true radiographic images.
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---
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## Related Repositories
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### 1. **Dataset Dataloaders**
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[2D Anatomy Datasets](https://github.com/ConstantinSeibold/2DAnatomyDatasets)
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This repository provides dataloaders for PAX-Ray++ and other datasets, making it easy to integrate the dataset into your machine learning pipelines.
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### 2. **Model Development and Applications**
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[Chest X-Ray Anatomy Segmentation](https://github.com/ConstantinSeibold/ChestXRayAnatomySegmentation)
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Explore pre-trained models and pipelines designed specifically for the PAX-Ray++ dataset and other similar datasets. This repository demonstrates how to apply segmentation models trained on PAX-Ray++.
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---
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## Getting Started
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### Download the Dataset
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```bash
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git lfs install
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git clone [email protected]:datasets/cmseibold/PAX-RayPlusPlus
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```
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or follow the instructions in [2D Anatomy Datasets](https://github.com/ConstantinSeibold/2DAnatomyDatasets/blob/main/src/prepare_data/prepare_paxraypp/get_paxraypp_full.sh) :
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```
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sh src/prepare_data/prepare_paxraypp/get_paxraypp_full.sh
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```
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### Dataset Structure
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The dataset consists of:
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- **Frontal View Images**: Annotated radiographs projected from thorax CT scans.
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- **Lateral View Images**: Corresponding annotations for lateral projections.
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Annotations are provided in a compatible COCO format for easy integration with common machine learning frameworks such as MMDetection and Detectron2.
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### Requirements
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Make sure to install the required libraries by following the instructions in the [2D Anatomy Datasets](https://github.com/ConstantinSeibold/2DAnatomyDatasets) repository.
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---
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## Citation
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If you use the PAX-Ray++ dataset in your research or projects, please consider citing the dataset.
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@inproceedings{Seibold_2023_CXAS,
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author = {Constantin Seibold, Alexander Jaus, Matthias Fink,
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Moon Kim, Simon Reiß, Jens Kleesiek*, Rainer Stiefelhagen*},
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title = {Accurate Fine-Grained Segmentation of Human Anatomy in Radiographs via Volumetric Pseudo-Labeling},
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year = {2023},
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}
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---
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## Feedback and Contributions
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Contributions, feedback, or questions are welcome! Feel free to open an issue or submit a pull request in the relevant repositories.
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