Update README.md

README.md

@@ -13,7 +13,7 @@ configs:
 - config_name: default
   data_files:
   - split: train
-    path: guidelines.jsonl
+    path: open_guidelines.jsonl
 tags:
 - medical
 - health
@@ -35,11 +35,15 @@ dataset_info:
     dtype: string
 ---
 
+### NEW DROP: PubMed Guidelines
+
+We just added 1627 clinical guidelines found in PubMed and PubMed Central to the dataset on December 23rd, 2023. Merry Christmas!
+
 # Clinical Guidelines
 
-The Clinical Guidelines corpus is a new dataset of 46K clinical practice guidelines from 16 high-quality online medical sources. This dataset serves as a crucial component of the original training corpus of the [Meditron](https://huggingface.co/epfl-llm/meditron-70b) Large Language Model (LLM). We publicly release a subset of 36K articles from our Guidelines corpus, extracted from 8 of 16 sources that allow content redistribution, namely CCO, CDC, CMA, ICRC, NICE, SPOR, WHO and WikiDoc. 
+The Clinical Guidelines corpus is a new dataset of 47K clinical practice guidelines from 17 high-quality online medical sources. This dataset serves as a crucial component of the original training corpus of the [Meditron](https://huggingface.co/epfl-llm/meditron-70b) Large Language Model (LLM). We publicly release a subset of 37K articles from our Guidelines corpus, extracted from 9 of 17 sources that allow content redistribution, namely CCO, CDC, CMA, ICRC, NICE, PubMed, SPOR, WHO and WikiDoc. 
 
-You can scrape and clean all 16 guideline sources using our code in [epfLLM/meditron](https://github.com/epfLLM/meditron). 
+You can scrape and clean all 17 guideline sources using our code in [epfLLM/meditron](https://github.com/epfLLM/meditron). 
 
 <img width=75% src="sources.png" alt="Sources of Clinical Practice Guidelines" title="CPG sources">
 
@@ -106,6 +110,7 @@ We employed pragmatic selection criteria over medical sources, seeking CPGs that
 | **[MAGIC](https://magicevidence.org/)** | Making GRADE The Irresistible Choice | `magic` | 52 | 415K | Doctor | Mix | No |
 | **[MayoClinic](https://www.mayoclinic.org/)** | MayoClinic | `mayo` | 1100 | 2.2M | Patient | USA | No |
 | **[NICE](https://www.nice.org.uk/guidance)** | National Institute for Health and Care Excellence | `nice` | 1656 | 8.1M | Doctor | UK | **Yes** |
+| **[PubMed](https://pubmed.ncbi.nlm.nih.gov)** | PubMed | `pubmed` | 1627 | 10.8M | Doctor | Mix | **Yes** |
 | **[RCH](https://www.rch.org.au/clinicalguide/about_rch_cpgs/welcome_to_the_clinical_practice_guidelines/)** | Royal Children's Hospital Melbourne | `rch` | 384 | 410K | Doctor | Australia | No |
 | **[SPOR](https://sporevidencealliance.ca/key-activities/cpg-asset-map/cpg-database/)** | Strategy for Patient-Oriented Research | `spor` | 217 | 1.1M | Doctor | Canada | **Yes** |
 | **[WHO](https://www.who.int/publications/who-guidelines)** | World Health Organization | `who` | 223 | 3.1M | Both | International | **Yes** |
@@ -139,11 +144,11 @@ Each row of the dataset represents one clinical practice guideline article, and
 |-------------|-------------------------------------------|------------------------------|
 | `id`        | Unique identifier for each article        | All                          |
 | `source`    | Source tag (`cco`, `cdc`, `cma`, `icrc`, `nice`, `spor`, `who` or `wikidoc`)| All  |
-| `title`     | Title of the article                       | CMA, NICE & WikiDoc only      |
-| `url`       | URL of the article                         | NICE, WikiDoc only            |
-| `raw_text`  | Unprocessed scraped article text          | All                          |
+| `title`     | Title of the article                       | CMA, NICE & WikiDoc      |
+| `url`       | URL of the article                         | NICE, WikiDoc & PubMed |
+| `raw_text`  | Unprocessed scraped article text          | All    |
 | `clean_text`| Cleaned and formatted article text        | All                          |
-| `overview`  | Short summary of the article               | NICE only                     |
+| `overview`  | Short summary or abstract of the article               | NICE & Pubmed                     |
 
 
 ## Uses