Datasets:

Modalities:
Text
Formats:
json
Languages:
English
ArXiv:
Libraries:
Datasets
pandas
License:
AGBonnet commited on
Commit
e97accf
·
1 Parent(s): f8eba61

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +168 -0
README.md CHANGED
@@ -2,4 +2,172 @@
2
  license: other
3
  license_name: common-crawl
4
  license_link: LICENSE
 
 
 
 
 
 
 
5
  ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
2
  license: other
3
  license_name: common-crawl
4
  license_link: LICENSE
5
+ task_categories:
6
+ - text-generation
7
+ language:
8
+ - en
9
+ pretty_name: Clinical Guidelines Corpus
10
+ size_categories:
11
+ - 10K<n<100K
12
  ---
13
+ # Dataset Card for Clinical Guidelines Corpus
14
+
15
+ The Clinical Guidelines corpus is a new dataset of 35K clinical practice guidelines from various medical sources.
16
+
17
+ It is part of the training corpus of the [Meditron](https://huggingface.co/epfl-llm/meditron-70b) LLM.
18
+
19
+ We release all scraped articles (in both raw and cleaned form) for the 8 of 16 clinical guidelines sources allowing redistribution (namely CCO, CDC, CMA, ICRC, NICE, SPOR, WHO & WikiDoc).
20
+
21
+ You can scrape and clean all 16 guideline sources using our web scrapers and pre-processing code in [epfLLM/meditron](https://github.com/epfLLM/meditron).
22
+
23
+ | Source | Full Name | Source tag | Total guidelines | Total words | Audience | Released |
24
+ |-|-|-|-|-|-|-|
25
+ | **[AAFP](https://www.aafp.org)** | American Academy of Family Physicians | `aafp` | 50 | 9.4K | Doctor | No |
26
+ | **[CCO](https://www.cancercareontario.ca/en/guidelines-advice)** | Cancer Care Ontario | `cco` | 87 | 199K | Doctor | **Yes** |
27
+ | **[CDC](https://www.cdc.gov/)** | Center for Disease Control and Prevention | `cdc` | 621 | 6.7M | Doctor | **Yes** |
28
+ | **[CMA](https://joulecma.ca/)** | Canadian Medical Association | `cma` | 431 | 1.7M | Doctor | **Yes** |
29
+ | **[CPS](https://cps.ca)** | Canadian Paediatric Society | `cps` | 54 | 133K | Doctor | No |
30
+ | **[drugs.com](https://www.drugs.com/)** | Drugs.com | `drugs` | 6548 | 4.1M | Both | No |
31
+ | **[GuidelineCentral](https://www.guidelinecentral.com/)** | GuidelineCentral | `gc` | 1029 | 1M | Doctor | No |
32
+ | **[ICRC](http://icrc.org/)** | International Committee of the Red Cross | `icrc` | 49 | 1.2M | Doctor | **Yes** |
33
+ | **[IDSA](https://www.idsociety.org/)** | Infectious Diseases Society of America | `idsa` | 47 | 646K | Doctor | No |
34
+ | **[MAGIC](https://magicevidence.org/)** | Making GRADE The Irresistible Choice | `magic` | 52 | 415K | Doctor | No |
35
+ | **[MayoClinic](https://www.mayoclinic.org/)** | MayoClinic | `mayo` | 1100 | 2.2M | Patient | No |
36
+ | **[NICE](https://www.nice.org.uk/guidance)** | National Institute for Health and Care Excellence | `nice` | 1656 | 8.1M | Doctor | **Yes** |
37
+ | **[RCH](https://www.rch.org.au/clinicalguide/about_rch_cpgs/welcome_to_the_clinical_practice_guidelines/)** | Royal Children's Hospital Melbourne | `rch` | 384 | 410K | Doctor | No |
38
+ | **[SPOR](https://sporevidencealliance.ca/key-activities/cpg-asset-map/cpg-database/)** | Strategy for Patient-Oriented Research | `spor` | 217 | 1.1M | Doctor | **Yes** |
39
+ | **[WHO](https://www.who.int/publications/who-guidelines)** | World Health Organization | `who` | 223 | 3.1M | Both | **Yes** |
40
+ | **[WikiDoc](https://www.wikidoc.org/)** | WikiDoc | `wikidoc` | 33058 | 34M | Both | **Yes** |
41
+
42
+
43
+ ## Dataset Details
44
+
45
+ ### Dataset Description
46
+
47
+ <!-- Provide a longer summary of what this dataset is. -->
48
+
49
+
50
+
51
+ - **Curated by:** [EPFL LLM Team](https://huggingface.co/epfl-llm)
52
+ - **Funded by [optional]:** [More Information Needed]
53
+ - **Shared by [optional]:** [More Information Needed]
54
+ - **Language(s) (NLP):** English only
55
+ - **License:** [More Information Needed]
56
+
57
+ ### Dataset Sources [optional]
58
+
59
+ <!-- Provide the basic links for the dataset. -->
60
+
61
+ - **Repository:** [epfLLM/meditron](https://github.com/epfLLM/meditron)
62
+ - **Paper [optional]:** *[MediTron-70B: Scaling Medical Pretraining for Large Language Models]()*
63
+ - **Demo [optional]:** [More Information Needed]
64
+
65
+ ## Uses
66
+
67
+ <!-- Address questions around how the dataset is intended to be used. -->
68
+
69
+ ### Direct Use
70
+
71
+ <!-- This section describes suitable use cases for the dataset. -->
72
+
73
+ [More Information Needed]
74
+
75
+ ### Out-of-Scope Use
76
+
77
+ <!-- This section addresses misuse, malicious use, and uses that the dataset will not work well for. -->
78
+
79
+ [More Information Needed]
80
+
81
+ ## Dataset Structure
82
+
83
+ <!-- This section provides a description of the dataset fields, and additional information about the dataset structure such as criteria used to create the splits, relationships between data points, etc. -->
84
+
85
+ [More Information Needed]
86
+
87
+ ## Dataset Creation
88
+
89
+ ### Curation Rationale
90
+
91
+ <!-- Motivation for the creation of this dataset. -->
92
+
93
+ [More Information Needed]
94
+
95
+ ### Source Data
96
+
97
+ <!-- This section describes the source data (e.g. news text and headlines, social media posts, translated sentences, ...). -->
98
+
99
+ #### Data Collection and Processing
100
+
101
+ <!-- This section describes the data collection and processing process such as data selection criteria, filtering and normalization methods, tools and libraries used, etc. -->
102
+
103
+ [More Information Needed]
104
+
105
+ #### Who are the source data producers?
106
+
107
+ <!-- This section describes the people or systems who originally created the data. It should also include self-reported demographic or identity information for the source data creators if this information is available. -->
108
+
109
+ [More Information Needed]
110
+
111
+ ### Annotations [optional]
112
+
113
+ <!-- If the dataset contains annotations which are not part of the initial data collection, use this section to describe them. -->
114
+
115
+ #### Annotation process
116
+
117
+ <!-- This section describes the annotation process such as annotation tools used in the process, the amount of data annotated, annotation guidelines provided to the annotators, interannotator statistics, annotation validation, etc. -->
118
+
119
+ [More Information Needed]
120
+
121
+ #### Who are the annotators?
122
+
123
+ <!-- This section describes the people or systems who created the annotations. -->
124
+
125
+ [More Information Needed]
126
+
127
+ #### Personal and Sensitive Information
128
+
129
+ <!-- State whether the dataset contains data that might be considered personal, sensitive, or private (e.g., data that reveals addresses, uniquely identifiable names or aliases, racial or ethnic origins, sexual orientations, religious beliefs, political opinions, financial or health data, etc.). If efforts were made to anonymize the data, describe the anonymization process. -->
130
+
131
+ [More Information Needed]
132
+
133
+ ## Bias, Risks, and Limitations
134
+
135
+ <!-- This section is meant to convey both technical and sociotechnical limitations. -->
136
+
137
+ [More Information Needed]
138
+
139
+ ### Recommendations
140
+
141
+ <!-- This section is meant to convey recommendations with respect to the bias, risk, and technical limitations. -->
142
+
143
+ Users should be made aware of the risks, biases and limitations of the dataset. More information needed for further recommendations.
144
+
145
+ ## Citation [optional]
146
+
147
+ <!-- If there is a paper or blog post introducing the dataset, the APA and Bibtex information for that should go in this section. -->
148
+
149
+ **BibTeX:**
150
+
151
+ [More Information Needed]
152
+
153
+ **APA:**
154
+
155
+ [More Information Needed]
156
+
157
+ ## Glossary [optional]
158
+
159
+ <!-- If relevant, include terms and calculations in this section that can help readers understand the dataset or dataset card. -->
160
+
161
+ [More Information Needed]
162
+
163
+ ## More Information [optional]
164
+
165
+ [More Information Needed]
166
+
167
+ ## Dataset Card Authors [optional]
168
+
169
+ [More Information Needed]
170
+
171
+ ## Dataset Card Contact
172
+
173
+ [More Information Needed]