Semantic masks

Signed-off-by: Jiri Podivin <[email protected]>

.gitattributes

@@ -59,3 +59,8 @@ labels_raw.json filter=lfs diff=lfs merge=lfs -text
 labels_test.csv filter=lfs diff=lfs merge=lfs -text
 labels_train.csv filter=lfs diff=lfs merge=lfs -text
 labels_raw filter=lfs diff=lfs merge=lfs -text
+metadata_train.csv filter=lfs diff=lfs merge=lfs -text
+metadata filter=lfs diff=lfs merge=lfs -text
+metadata_semantic_test.csv filter=lfs diff=lfs merge=lfs -text
+metadata_semantic_train.csv filter=lfs diff=lfs merge=lfs -text
+metadata_test.csv filter=lfs diff=lfs merge=lfs -text

metadata_semantic_test.csv

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a0f94ce4ddaefe6cd6881698ae9b375907a9a44ee26ee6e8b226f7fc4843e0ac
+size 9839152

metadata_semantic_train.csv

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:dce5995456cc88209702d3e324299c99121db8f0d6819919aee8d600b5e4d47c
+size 22904232

plantorgans.py

@@ -16,13 +16,18 @@ _BASE_URL = "https://huggingface.co/datasets/jpodivin/plantorgans/resolve/main/"
 _TRAIN_URLS = [_BASE_URL + f"sourcedata_labeled.tar.{i:02}" for i in range(0, 8)]
 _TEST_URLS = [_BASE_URL + f"sourcedata_labeled.tar.{i:02}" for i in range(8, 12)]
 _MASKS_URLS = [_BASE_URL + f"masks.tar.0{i}" for i in range(0, 2)]
+_SEMANTIC_MASKS_URLS = [_BASE_URL + f"semantic_masks.tar.0{i}" for i in range(0, 2)]
 
-_METADATA_URLS = {
+_SEMANTIC_METADATA_URLS = {
+    'train': 'https://huggingface.co/datasets/jpodivin/plantorgans/resolve/main/metadata_semantic_train.csv',
+    'test': 'https://huggingface.co/datasets/jpodivin/plantorgans/resolve/main/metadata_semantic_test.csv'
+}
+
+_PANOPTIC_METADATA_URLS = {
     'train': 'https://huggingface.co/datasets/jpodivin/plantorgans/resolve/main/metadata_train.csv',
     'test': 'https://huggingface.co/datasets/jpodivin/plantorgans/resolve/main/metadata_test.csv'
 }
 
-
 class PlantOrgansConfig(datasets.BuilderConfig):
     """Builder Config for PlantOrgans"""
  
@@ -47,7 +52,7 @@ class PlantOrgans(datasets.GeneratorBasedBuilder):
             name="semantic_segmentation_full",
             description="This configuration contains segmentation masks.",
             data_url=_BASE_URL,
-            metadata_urls=_METADATA_URLS,
+            metadata_urls=_SEMANTIC_METADATA_URLS,
             splits=['train', 'test'],
         ),
     ]
@@ -59,8 +64,8 @@ class PlantOrgans(datasets.GeneratorBasedBuilder):
                 {
                     "image": datasets.Image(),
                     "mask": datasets.Image(),
-                    "score": datasets.Value(dtype='double'),
-                    "image_name": datasets.Value(dtype="string")
+                    "image_name": datasets.Value(dtype="string"),
+                    "class": datasets.Value(dtype="string")
                 }
             ),
             supervised_keys=("image", "mask"),
@@ -82,13 +87,13 @@ class PlantOrgans(datasets.GeneratorBasedBuilder):
             train_paths.extend(glob.glob(str(p)+'/sourcedata/labeled/**.jpg'))
         for p in test_archives_paths:
             test_paths.extend(glob.glob(str(p)+'/sourcedata/labeled/**.jpg'))
-        split_metadata_paths = dl_manager.download(_METADATA_URLS)
+        split_metadata_paths = dl_manager.download(_SEMANTIC_METADATA_URLS)
 
-        mask_archives_paths = dl_manager.download_and_extract(_MASKS_URLS)
+        mask_archives_paths = dl_manager.download_and_extract(_SEMANTIC_MASKS_URLS)
             
         mask_paths = []
         for p in mask_archives_paths:
-            mask_paths.extend(glob.glob(str(p)+'/masks/**.png'))
+            mask_paths.extend(glob.glob(str(p)+'/semantic_masks/**.png'))
 
         return [
             datasets.SplitGenerator(
@@ -140,7 +145,7 @@ class PlantOrgans(datasets.GeneratorBasedBuilder):
                 'mask': r['mask_path'],
                 'image': r['image_path'],
                 'image_name': Path(r['image_path']).parts[-1],
-                'score': r['score']
+                'class': r['class']
             }
 
             yield i, example

semantic_masks.tar.00

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+version https://git-lfs.github.com/spec/v1
+oid sha256:41d2d9638b7f12a5284ced53e1d9a4591b11c3227476feed328ca48947b744a5
+size 582758400

semantic_masks.tar.01

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+oid sha256:a027e3447f65c326b972ce1c1eeec102338f411a78e5d261d7f9fce405013515
+size 512757760