h4iku/coconut_java2006 · Datasets at Hugging Face

if (getRubyClass() == other.getRubyClass()) { return new RubyNumeric[] {this, other}; } else { return new RubyNumeric[] {RubyFloat.newFloat(getRuby(), getDoubleValue()), RubyFloat.newFloat(getRuby(), other.getDoubleValue())}; } }

public RubyNumeric[] getCoerce(RubyNumeric other) { if (getRubyClass() == other.getRubyClass()) { return new RubyNumeric[] {this, other}; } else { return new RubyNumeric[] {RubyFloat.newFloat(getRuby(), getDoubleValue()), RubyFloat.newFloat(getRuby(), other.getDoubleValue())}; } }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e3f72aab20ef1fc8576d8fa6823d9722ed33c55c/RubyNumeric.java/buggy/org/jruby/RubyNumeric.java

return getRuby().getFalse(); }

public RubyBoolean int_p() { return getRuby().getFalse(); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e3f72aab20ef1fc8576d8fa6823d9722ed33c55c/RubyNumeric.java/buggy/org/jruby/RubyNumeric.java

return (RubyNumeric)funcall("%", other); }

public RubyNumeric modulo(RubyNumeric other) { return (RubyNumeric)funcall("%", other); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e3f72aab20ef1fc8576d8fa6823d9722ed33c55c/RubyNumeric.java/buggy/org/jruby/RubyNumeric.java

if (funcall("zero?").isTrue()) { return getRuby().getNil(); } return this; }

public RubyObject nonzero_p() { if (funcall("zero?").isTrue()) { return getRuby().getNil(); } return this; }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e3f72aab20ef1fc8576d8fa6823d9722ed33c55c/RubyNumeric.java/buggy/org/jruby/RubyNumeric.java

if (arg instanceof RubyNumeric) { return ((RubyNumeric)arg).getLongValue(); } throw new TypeError(arg.getRuby(), "argument is not numeric"); }

public static long num2long(RubyObject arg) { if (arg instanceof RubyNumeric) { return ((RubyNumeric)arg).getLongValue(); } throw new TypeError(arg.getRuby(), "argument is not numeric"); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e3f72aab20ef1fc8576d8fa6823d9722ed33c55c/RubyNumeric.java/buggy/org/jruby/RubyNumeric.java

if (!(arg instanceof RubyNumeric)) { throw new TypeError(arg.getRuby(), "argument not numeric"); } return (RubyNumeric)arg; }

public static RubyNumeric numericValue(RubyObject arg) { if (!(arg instanceof RubyNumeric)) { throw new TypeError(arg.getRuby(), "argument not numeric"); } return (RubyNumeric)arg; }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e3f72aab20ef1fc8576d8fa6823d9722ed33c55c/RubyNumeric.java/buggy/org/jruby/RubyNumeric.java

RubyNumeric[] coerce = getCoerce(RubyFixnum.zero(getRuby())); return (RubyNumeric)coerce[1].funcall("-", coerce[0]); }

public RubyNumeric op_uminus() { RubyNumeric[] coerce = getCoerce(RubyFixnum.zero(getRuby())); return (RubyNumeric)coerce[1].funcall("-", coerce[0]); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e3f72aab20ef1fc8576d8fa6823d9722ed33c55c/RubyNumeric.java/buggy/org/jruby/RubyNumeric.java

return this; }

public RubyNumeric op_uplus() { return this; }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e3f72aab20ef1fc8576d8fa6823d9722ed33c55c/RubyNumeric.java/buggy/org/jruby/RubyNumeric.java

return this; }

public RubyObject rbClone() { return this; }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e3f72aab20ef1fc8576d8fa6823d9722ed33c55c/RubyNumeric.java/buggy/org/jruby/RubyNumeric.java

RubyNumeric mod = (RubyNumeric)funcall("%", other); final RubyNumeric zero = RubyFixnum.zero(getRuby()); if (funcall("<", zero).isTrue() && other.funcall(">", zero).isTrue() || funcall(">", zero).isTrue() && other.funcall("<", zero).isTrue()) { return (RubyNumeric)mod.funcall("-", other); } return mod; }

public RubyNumeric remainder(RubyNumeric other) { RubyNumeric mod = (RubyNumeric)funcall("%", other); final RubyNumeric zero = RubyFixnum.zero(getRuby()); if (funcall("<", zero).isTrue() && other.funcall(">", zero).isTrue() || funcall(">", zero).isTrue() && other.funcall("<", zero).isTrue()) { return (RubyNumeric)mod.funcall("-", other); } return mod; }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e3f72aab20ef1fc8576d8fa6823d9722ed33c55c/RubyNumeric.java/buggy/org/jruby/RubyNumeric.java

return RubyFloat.newFloat(getRuby(), getDoubleValue()).round(); }

public RubyInteger round() { return RubyFloat.newFloat(getRuby(), getDoubleValue()).round(); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e3f72aab20ef1fc8576d8fa6823d9722ed33c55c/RubyNumeric.java/buggy/org/jruby/RubyNumeric.java

String str = arg.getValue().trim(); double d = 0.0; int pos = str.length(); for (int i = 0; i < pos; i++) { if ("0123456789eE+-.".indexOf(str.charAt(i)) == -1) { pos = i + 1; break; } } for (; pos > 0; pos--) { try { d = Double.parseDouble(str.substring(0, pos)); } catch (NumberFormatException ex) { continue; } break; } return new RubyFloat(ruby, d); }

public static RubyFloat str2fnum(Ruby ruby, RubyString arg) { String str = arg.getValue().trim(); double d = 0.0; int pos = str.length(); for (int i = 0; i < pos; i++) { if ("0123456789eE+-.".indexOf(str.charAt(i)) == -1) { pos = i + 1; break; } } for (; pos > 0; pos--) { try { d = Double.parseDouble(str.substring(0, pos)); } catch (NumberFormatException ex) { continue; } break; } return new RubyFloat(ruby, d); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e3f72aab20ef1fc8576d8fa6823d9722ed33c55c/RubyNumeric.java/buggy/org/jruby/RubyNumeric.java

StringBuffer sbuf = new StringBuffer(str.getValue().trim()); if (sbuf.length() == 0) { return RubyFixnum.zero(ruby); } int pos = 0; int radix = (base != 0) ? base : 10; boolean digitsFound = false; if (sbuf.charAt(pos) == '-') { pos++; } else if (sbuf.charAt(pos) == '+') { sbuf.deleteCharAt(pos); } if (pos == sbuf.length()) { return RubyFixnum.zero(ruby); } if (sbuf.charAt(pos) == '0') { sbuf.deleteCharAt(pos); if (pos == sbuf.length()) { return RubyFixnum.zero(ruby); } if (sbuf.charAt(pos) == 'x' || sbuf.charAt(pos) == 'X') { if (base == 0 || base == 16) { radix = 16; sbuf.deleteCharAt(pos); } } else if (sbuf.charAt(pos) == 'b' || sbuf.charAt(pos) == 'B') { if (base == 0 || base == 2) { radix = 2; sbuf.deleteCharAt(pos); } } else { radix = (base == 0) ? 8 : base; } } while (pos < sbuf.length()) { if (sbuf.charAt(pos) == '_') { sbuf.deleteCharAt(pos); } else if (Character.digit(sbuf.charAt(pos), radix) != -1) { digitsFound = true; pos++; } else { break; } } if (!digitsFound) { return RubyFixnum.zero(ruby); } try { long l = Long.parseLong(sbuf.substring(0, pos), radix); return RubyFixnum.newFixnum(ruby, l); } catch (NumberFormatException ex) { BigInteger bi = new BigInteger(sbuf.substring(0, pos), radix); return new RubyBignum(ruby, bi); } }

public static RubyInteger str2inum(Ruby ruby, RubyString str, int base) { StringBuffer sbuf = new StringBuffer(str.getValue().trim()); if (sbuf.length() == 0) { return RubyFixnum.zero(ruby); } int pos = 0; int radix = (base != 0) ? base : 10; boolean digitsFound = false; if (sbuf.charAt(pos) == '-') { pos++; } else if (sbuf.charAt(pos) == '+') { sbuf.deleteCharAt(pos); } if (pos == sbuf.length()) { return RubyFixnum.zero(ruby); } if (sbuf.charAt(pos) == '0') { sbuf.deleteCharAt(pos); if (pos == sbuf.length()) { return RubyFixnum.zero(ruby); } if (sbuf.charAt(pos) == 'x' || sbuf.charAt(pos) == 'X') { if (base == 0 || base == 16) { radix = 16; sbuf.deleteCharAt(pos); } } else if (sbuf.charAt(pos) == 'b' || sbuf.charAt(pos) == 'B') { if (base == 0 || base == 2) { radix = 2; sbuf.deleteCharAt(pos); } } else { radix = (base == 0) ? 8 : base; } } while (pos < sbuf.length()) { if (sbuf.charAt(pos) == '_') { sbuf.deleteCharAt(pos); } else if (Character.digit(sbuf.charAt(pos), radix) != -1) { digitsFound = true; pos++; } else { break; } } if (!digitsFound) { return RubyFixnum.zero(ruby); } try { long l = Long.parseLong(sbuf.substring(0, pos), radix); return RubyFixnum.newFixnum(ruby, l); } catch (NumberFormatException ex) { BigInteger bi = new BigInteger(sbuf.substring(0, pos), radix); return new RubyBignum(ruby, bi); } }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e3f72aab20ef1fc8576d8fa6823d9722ed33c55c/RubyNumeric.java/buggy/org/jruby/RubyNumeric.java

return RubyFloat.newFloat(getRuby(), getDoubleValue()).truncate(); }

public RubyInteger truncate() { return RubyFloat.newFloat(getRuby(), getDoubleValue()).truncate(); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e3f72aab20ef1fc8576d8fa6823d9722ed33c55c/RubyNumeric.java/buggy/org/jruby/RubyNumeric.java

return equal(RubyFixnum.zero(getRuby())); }

public RubyBoolean zero_p() { return equal(RubyFixnum.zero(getRuby())); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e3f72aab20ef1fc8576d8fa6823d9722ed33c55c/RubyNumeric.java/buggy/org/jruby/RubyNumeric.java

currentLoader = new ThumbnailLoader(component, browser.getImages());

currentLoader = new ThumbnailLoader(component, images);

void fireThumbnailLoading() { state = HiViewer.LOADING_THUMBNAILS; currentLoader = new ThumbnailLoader(component, browser.getImages()); currentLoader.load(); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e123367d3b024349b8d299ef57fb0e01d9f51942/HiViewerModel.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/view/HiViewerModel.java

System.err.println(footprint.getWidth()+","+footprint.getWidth()); System.err.println("dim:"+width+","+height);

public void setZoomLevel(double zoomLevel) { // error condition if(zoomLevel <= 0) { return; } if(scaleToShow) return; Dimension dim = getSize(); double width = dim.getWidth(); double height = dim.getHeight(); double scale = getCamera().getViewScale(); double viewWidth = getCamera().getViewBounds().getWidth(); double viewHeight = getCamera().getViewBounds().getHeight(); double viewCenterX = getCamera().getViewBounds().getCenterX(); double viewCenterY = getCamera().getViewBounds().getCenterY(); double scaleX = 0; double scaleY = 0; System.err.println(footprint.getWidth()+","+footprint.getWidth()); System.err.println("dim:"+width+","+height); if(width/zoomLevel < footprint.getWidth()) { scaleX = viewCenterX; if((viewCenterX - (scale/zoomLevel)*viewWidth/2) < 0) { scaleX = 0; } } if(height/zoomLevel < footprint.getHeight()) { scaleY = viewCenterY; if((viewCenterY - (scale/zoomLevel)*viewWidth/2) < 0) { scaleY = 0; } } System.err.println("scaleX="+scaleX+", scaleY="+scaleY); getCamera().scaleViewAboutPoint(zoomLevel/scale,scaleX,scaleY); updateConstraints(); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/186ead79c1ec71a6147b8b6e6e37ef46e68e9924/BrowserView.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/ui/BrowserView.java

if((viewCenterY - (scale/zoomLevel)*viewWidth/2) < 0)

if((viewCenterY - (scale/zoomLevel)*viewHeight/2) < 0)

public void setZoomLevel(double zoomLevel) { // error condition if(zoomLevel <= 0) { return; } if(scaleToShow) return; Dimension dim = getSize(); double width = dim.getWidth(); double height = dim.getHeight(); double scale = getCamera().getViewScale(); double viewWidth = getCamera().getViewBounds().getWidth(); double viewHeight = getCamera().getViewBounds().getHeight(); double viewCenterX = getCamera().getViewBounds().getCenterX(); double viewCenterY = getCamera().getViewBounds().getCenterY(); double scaleX = 0; double scaleY = 0; System.err.println(footprint.getWidth()+","+footprint.getWidth()); System.err.println("dim:"+width+","+height); if(width/zoomLevel < footprint.getWidth()) { scaleX = viewCenterX; if((viewCenterX - (scale/zoomLevel)*viewWidth/2) < 0) { scaleX = 0; } } if(height/zoomLevel < footprint.getHeight()) { scaleY = viewCenterY; if((viewCenterY - (scale/zoomLevel)*viewWidth/2) < 0) { scaleY = 0; } } System.err.println("scaleX="+scaleX+", scaleY="+scaleY); getCamera().scaleViewAboutPoint(zoomLevel/scale,scaleX,scaleY); updateConstraints(); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/186ead79c1ec71a6147b8b6e6e37ef46e68e9924/BrowserView.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/ui/BrowserView.java

public void updateConstraints() { Dimension dimension = getSize(); double width = dimension.getWidth(); double height = dimension.getHeight(); double xRatio = width / footprint.getWidth(); double yRatio = height / footprint.getHeight(); if(Math.min(xRatio,yRatio) != minZoomLevel) { minZoomLevel = Math.min(xRatio,yRatio); for(Iterator iter = zoomParamListeners.iterator(); iter.hasNext();) { ZoomParamListener listener = (ZoomParamListener)iter.next(); listener.minZoomLevelChanged(minZoomLevel); } } // for some reason, setting setViewScale(0) screws things up // in a big way. if(scaleToShow) { if((xRatio < 1 || yRatio < 1) && (xRatio != 0 && yRatio != 0)) { double min = Math.min(xRatio,yRatio); getCamera().setViewScale(min); } else { getCamera().setViewScale(1); } } boundCameraPosition(); double viewScale = getCamera().getViewScale(); backgroundNode.setBounds(0,0,width/viewScale,height/viewScale); // update things for(Iterator iter = regionSensitive.iterator(); iter.hasNext();) { RegionSensitive rs = (RegionSensitive)iter.next(); rs.setActiveRegion(footprint); } System.err.println(footprint); System.err.println("Dim: "+width+","+height); overlayCamera.cameraResized(new Rectangle2D.Double(0,0,width,height)); for(Iterator iter = zoomParamListeners.iterator(); iter.hasNext();) { ZoomParamListener listener = (ZoomParamListener)iter.next(); listener.zoomLevelChanged(viewScale); } }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/186ead79c1ec71a6147b8b6e6e37ef46e68e9924/BrowserView.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/ui/BrowserView.java

System.err.println(footprint); System.err.println("Dim: "+width+","+height);

public void updateConstraints() { Dimension dimension = getSize(); double width = dimension.getWidth(); double height = dimension.getHeight(); double xRatio = width / footprint.getWidth(); double yRatio = height / footprint.getHeight(); if(Math.min(xRatio,yRatio) != minZoomLevel) { minZoomLevel = Math.min(xRatio,yRatio); for(Iterator iter = zoomParamListeners.iterator(); iter.hasNext();) { ZoomParamListener listener = (ZoomParamListener)iter.next(); listener.minZoomLevelChanged(minZoomLevel); } } // for some reason, setting setViewScale(0) screws things up // in a big way. if(scaleToShow) { if((xRatio < 1 || yRatio < 1) && (xRatio != 0 && yRatio != 0)) { double min = Math.min(xRatio,yRatio); getCamera().setViewScale(min); } else { getCamera().setViewScale(1); } } boundCameraPosition(); double viewScale = getCamera().getViewScale(); backgroundNode.setBounds(0,0,width/viewScale,height/viewScale); // update things for(Iterator iter = regionSensitive.iterator(); iter.hasNext();) { RegionSensitive rs = (RegionSensitive)iter.next(); rs.setActiveRegion(footprint); } System.err.println(footprint); System.err.println("Dim: "+width+","+height); overlayCamera.cameraResized(new Rectangle2D.Double(0,0,width,height)); for(Iterator iter = zoomParamListeners.iterator(); iter.hasNext();) { ZoomParamListener listener = (ZoomParamListener)iter.next(); listener.zoomLevelChanged(viewScale); } }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/186ead79c1ec71a6147b8b6e6e37ef46e68e9924/BrowserView.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/ui/BrowserView.java

{ super(control.getReferenceFrame(), "Image inspector"); init(control, canvas, magFactor); setJMenuBar(menuBar); buildGUI();

public ImageInspector(ViewerCtrl control, ImageCanvas canvas, double magFactor) { super(control.getReferenceFrame(), "Image inspector"); init(control, canvas, magFactor); setJMenuBar(menuBar); buildGUI(); pack(); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a2f4cd0a125d188c1e246cd85608e59a51e3d85c/ImageInspector.java/buggy/SRC/org/openmicroscopy/shoola/agents/viewer/transform/ImageInspector.java

}

public ImageInspector(ViewerCtrl control, ImageCanvas canvas, double magFactor) { super(control.getReferenceFrame(), "Image inspector"); init(control, canvas, magFactor); setJMenuBar(menuBar); buildGUI(); pack(); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a2f4cd0a125d188c1e246cd85608e59a51e3d85c/ImageInspector.java/buggy/SRC/org/openmicroscopy/shoola/agents/viewer/transform/ImageInspector.java

{

private void buildGUI() { setResizable(false); getContentPane().add(toolBar, BorderLayout.NORTH); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a2f4cd0a125d188c1e246cd85608e59a51e3d85c/ImageInspector.java/buggy/SRC/org/openmicroscopy/shoola/agents/viewer/transform/ImageInspector.java

getContentPane().add(toolBar, BorderLayout.NORTH); }

private void buildGUI() { setResizable(false); getContentPane().add(toolBar, BorderLayout.NORTH); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a2f4cd0a125d188c1e246cd85608e59a51e3d85c/ImageInspector.java/buggy/SRC/org/openmicroscopy/shoola/agents/viewer/transform/ImageInspector.java

{ Registry reg = control.getRegistry(); manager = new ImageInspectorManager(this, control, magFactor);

private void init(ViewerCtrl control, ImageCanvas canvas, double magFactor) { Registry reg = control.getRegistry(); manager = new ImageInspectorManager(this, control, magFactor); BufferedImage img = control.getBufferedImage(); manager.setImageDimension(img.getWidth(), img.getHeight()); manager.setCanvas(canvas); menuBar = new MenuBar(manager, magFactor); toolBar = new ToolBar(reg, manager, magFactor); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a2f4cd0a125d188c1e246cd85608e59a51e3d85c/ImageInspector.java/buggy/SRC/org/openmicroscopy/shoola/agents/viewer/transform/ImageInspector.java

manager.setImageDimension(img.getWidth(), img.getHeight());

private void init(ViewerCtrl control, ImageCanvas canvas, double magFactor) { Registry reg = control.getRegistry(); manager = new ImageInspectorManager(this, control, magFactor); BufferedImage img = control.getBufferedImage(); manager.setImageDimension(img.getWidth(), img.getHeight()); manager.setCanvas(canvas); menuBar = new MenuBar(manager, magFactor); toolBar = new ToolBar(reg, manager, magFactor); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a2f4cd0a125d188c1e246cd85608e59a51e3d85c/ImageInspector.java/buggy/SRC/org/openmicroscopy/shoola/agents/viewer/transform/ImageInspector.java

menuBar = new MenuBar(manager, magFactor); toolBar = new ToolBar(reg, manager, magFactor); }

private void init(ViewerCtrl control, ImageCanvas canvas, double magFactor) { Registry reg = control.getRegistry(); manager = new ImageInspectorManager(this, control, magFactor); BufferedImage img = control.getBufferedImage(); manager.setImageDimension(img.getWidth(), img.getHeight()); manager.setCanvas(canvas); menuBar = new MenuBar(manager, magFactor); toolBar = new ToolBar(reg, manager, magFactor); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a2f4cd0a125d188c1e246cd85608e59a51e3d85c/ImageInspector.java/buggy/SRC/org/openmicroscopy/shoola/agents/viewer/transform/ImageInspector.java

this.outStream = new BufferedOutputStream(new FileOutputStream(file, append));

this.outStream = new BufferedOutputStream(new FileOutputStream(file.getAbsolutePath(), append));

protected void openInternal(String path, String mode) { this.path = path; setMode(mode); File file = new File(path); try { if (isReadable()) { this.inStream = new RubyInputStream(new BufferedInputStream(new FileInputStream(file))); } if (isWriteable()) { this.outStream = new BufferedOutputStream(new FileOutputStream(file, append)); } } catch (IOException ioExcptn) { throw new IOError(getRuby(), ioExcptn.getMessage()); } }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/263d8797aa5be7bc604097d1d483cf474b827c91/RubyFile.java/buggy/org/jruby/RubyFile.java

test that row is gone.

fail("test that row is gone.");

public void testAndHeresHowWeUnlinkThings() throws Exception { // Method 1: saveImage(); List updated = unlinkImage(); iUpdate.saveCollection( updated ); test that row is gone. // Method 2: saveImage(); updated = unlinkImage(); iPojos.udpateDataObjects( (IObject[]) updated.toArray(new IObject[updated.size()]), null); // Method 3: Dataset d = new Dataset(); Project p = new Project(); p = (Project) iPojos.createDataObject( p, null ); d = (Dataset) iPojos.createDataObject( d, null ); ProjectDatasetLink link = new ProjectDatasetLink(); link.setParent( p ); link.setChild( c ); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/219ccffc5a6aec003f33d7752f571d33549cce00/PojosServiceTest.java/clean/components/shoola-adapter/test/ome/adapters/pojos/itests/PojosServiceTest.java

link.setChild( c );

link.setChild( d );

public void testAndHeresHowWeUnlinkThings() throws Exception { // Method 1: saveImage(); List updated = unlinkImage(); iUpdate.saveCollection( updated ); test that row is gone. // Method 2: saveImage(); updated = unlinkImage(); iPojos.udpateDataObjects( (IObject[]) updated.toArray(new IObject[updated.size()]), null); // Method 3: Dataset d = new Dataset(); Project p = new Project(); p = (Project) iPojos.createDataObject( p, null ); d = (Dataset) iPojos.createDataObject( d, null ); ProjectDatasetLink link = new ProjectDatasetLink(); link.setParent( p ); link.setChild( c ); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/219ccffc5a6aec003f33d7752f571d33549cce00/PojosServiceTest.java/clean/components/shoola-adapter/test/ome/adapters/pojos/itests/PojosServiceTest.java

console.setLayout(new BorderLayout());

console.getContentPane().setLayout(new BorderLayout());

public static void main(String[] args) { final IRBConsole console = new IRBConsole("JRuby IRB Console"); PipedInputStream pipeIn = new PipedInputStream(); console.setLayout(new BorderLayout()); console.setSize(700, 600); JEditorPane text = new JTextPane(); text.setMargin(new Insets(8,8,8,8)); text.setCaretColor(new Color(0xa4, 0x00, 0x00)); text.setBackground(new Color(0xf2, 0xf2, 0xf2)); text.setForeground(new Color(0xa4, 0x00, 0x00)); Font font = console.findFont("Monospaced", Font.PLAIN, 14, new String[] {"Monaco", "Andale Mono"}); text.setFont(font); JScrollPane pane = new JScrollPane(); pane.setViewportView(text); pane.setBorder(BorderFactory.createLineBorder(Color.darkGray)); console.add(pane); console.validate(); TextAreaReadline tar = new TextAreaReadline(text, " Welcome to the JRuby IRB Console \n\n"); final IRuby runtime = Ruby.newInstance(pipeIn, new PrintStream(tar), new PrintStream(tar), false); IRubyObject argumentArray = runtime.newArray(JavaUtil.convertJavaArrayToRuby(runtime, args)); runtime.defineGlobalConstant("ARGV", argumentArray); runtime.getGlobalVariables().defineReadonly("$*", new ValueAccessor(argumentArray)); runtime.getGlobalVariables().defineReadonly("$$", new ValueAccessor(runtime.newFixnum(System.identityHashCode(runtime)))); runtime.getLoadService().init(new ArrayList()); tar.hookIntoRuntime(runtime); Thread t2 = new Thread() { public void run() { console.setVisible(true); runtime.evalScript("require 'irb'; require 'irb/completion'; IRB.start"); } }; t2.start(); try { t2.join(); } catch (InterruptedException ie) { // ignore } System.exit(0); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a757121012744f77b135696456ba9a8170135244/IRBConsole.java/buggy/src/org/jruby/demo/IRBConsole.java

console.add(pane);

console.getContentPane().add(pane);

public static void main(String[] args) { final IRBConsole console = new IRBConsole("JRuby IRB Console"); PipedInputStream pipeIn = new PipedInputStream(); console.setLayout(new BorderLayout()); console.setSize(700, 600); JEditorPane text = new JTextPane(); text.setMargin(new Insets(8,8,8,8)); text.setCaretColor(new Color(0xa4, 0x00, 0x00)); text.setBackground(new Color(0xf2, 0xf2, 0xf2)); text.setForeground(new Color(0xa4, 0x00, 0x00)); Font font = console.findFont("Monospaced", Font.PLAIN, 14, new String[] {"Monaco", "Andale Mono"}); text.setFont(font); JScrollPane pane = new JScrollPane(); pane.setViewportView(text); pane.setBorder(BorderFactory.createLineBorder(Color.darkGray)); console.add(pane); console.validate(); TextAreaReadline tar = new TextAreaReadline(text, " Welcome to the JRuby IRB Console \n\n"); final IRuby runtime = Ruby.newInstance(pipeIn, new PrintStream(tar), new PrintStream(tar), false); IRubyObject argumentArray = runtime.newArray(JavaUtil.convertJavaArrayToRuby(runtime, args)); runtime.defineGlobalConstant("ARGV", argumentArray); runtime.getGlobalVariables().defineReadonly("$*", new ValueAccessor(argumentArray)); runtime.getGlobalVariables().defineReadonly("$$", new ValueAccessor(runtime.newFixnum(System.identityHashCode(runtime)))); runtime.getLoadService().init(new ArrayList()); tar.hookIntoRuntime(runtime); Thread t2 = new Thread() { public void run() { console.setVisible(true); runtime.evalScript("require 'irb'; require 'irb/completion'; IRB.start"); } }; t2.start(); try { t2.join(); } catch (InterruptedException ie) { // ignore } System.exit(0); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a757121012744f77b135696456ba9a8170135244/IRBConsole.java/buggy/src/org/jruby/demo/IRBConsole.java

for (int i = 0, len = getLength(); i < len; i++) { if (obj.callMethod(context, "==", entry(i)).isTrue()) {

int len = getLength(); for (int i = 0; i < len; i++) { if (entry(i).callMethod(context, "==", obj).isTrue()) {

public IRubyObject index(IRubyObject obj) { ThreadContext context = getRuntime().getCurrentContext(); for (int i = 0, len = getLength(); i < len; i++) { if (obj.callMethod(context, "==", entry(i)).isTrue()) { return getRuntime().newFixnum(i); } } return getRuntime().getNil(); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/1e0d087fdeb07557be3a064979fee7e0534c215f/RubyArray.java/buggy/src/org/jruby/RubyArray.java

if (obj.callMethod(context, "==", entry(i)).isTrue()) {

if (entry(i).callMethod(context, "==", obj).isTrue()) {

public IRubyObject rindex(IRubyObject obj) { ThreadContext context = getRuntime().getCurrentContext(); for (int i = getLength() - 1; i >= 0; i--) { if (obj.callMethod(context, "==", entry(i)).isTrue()) { return getRuntime().newFixnum(i); } } return getRuntime().getNil(); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/1e0d087fdeb07557be3a064979fee7e0534c215f/RubyArray.java/buggy/src/org/jruby/RubyArray.java

if (argCount(args, 1, 2) == 2) { int beg = RubyNumeric.fix2int(args[0]); int len = RubyNumeric.fix2int(args[1]); return substr(beg, len); } if (args[0] instanceof RubyFixnum) { int idx = RubyNumeric.fix2int(args[0]); if (idx < 0) { idx += getValue().length(); } if (idx < 0 || idx >= getValue().length()) { return getRuntime().getNil(); } return RubyFixnum.newFixnum(getRuntime(), getValue().charAt(idx)); } if (args[0] instanceof RubyRegexp) { if (RubyRegexp.regexpValue(args[0]).search(this, 0) >= 0) { return RubyRegexp.last_match(getRuntime().getBackref()); } return getRuntime().getNil(); } if (args[0] instanceof RubyString) { if (getValue().indexOf(stringValue(args[0]).getValue()) != -1) { return args[0]; } return getRuntime().getNil(); } if (args[0] instanceof RubyRange) { long[] begLen = ((RubyRange) args[0]).getBeginLength(getValue().length(), true, false); if (begLen == null) { return getRuntime().getNil(); } return substr((int) begLen[0], (int) begLen[1]); } int idx = (int) RubyNumeric.num2long(args[0]); if (idx < 0) { idx += getValue().length(); } if (idx < 0 || idx >= getValue().length()) { return getRuntime().getNil(); } return RubyFixnum.newFixnum(getRuntime(), getValue().charAt(idx));

try { return arefWithErrors(args); } catch (IndexError e) { } catch (RangeError e) { } return getRuntime().getNil();

public IRubyObject aref(IRubyObject[] args) { if (argCount(args, 1, 2) == 2) { int beg = RubyNumeric.fix2int(args[0]); int len = RubyNumeric.fix2int(args[1]); return substr(beg, len); } if (args[0] instanceof RubyFixnum) { int idx = RubyNumeric.fix2int(args[0]); if (idx < 0) { idx += getValue().length(); } if (idx < 0 || idx >= getValue().length()) { return getRuntime().getNil(); } return RubyFixnum.newFixnum(getRuntime(), getValue().charAt(idx)); } if (args[0] instanceof RubyRegexp) { if (RubyRegexp.regexpValue(args[0]).search(this, 0) >= 0) { return RubyRegexp.last_match(getRuntime().getBackref()); } return getRuntime().getNil(); } if (args[0] instanceof RubyString) { if (getValue().indexOf(stringValue(args[0]).getValue()) != -1) { return args[0]; } return getRuntime().getNil(); } if (args[0] instanceof RubyRange) { long[] begLen = ((RubyRange) args[0]).getBeginLength(getValue().length(), true, false); if (begLen == null) { return getRuntime().getNil(); } return substr((int) begLen[0], (int) begLen[1]); } int idx = (int) RubyNumeric.num2long(args[0]); if (idx < 0) { idx += getValue().length(); } if (idx < 0 || idx >= getValue().length()) { return getRuntime().getNil(); } return RubyFixnum.newFixnum(getRuntime(), getValue().charAt(idx)); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/4e8afef0dba3b66a390c9ba70b997174b975fc0e/RubyString.java/clean/src/org/jruby/RubyString.java

/* use Java implementatiom */ return getValue().compareTo(other.getValue());

int value = getValue().compareTo(other.getValue()); return value < 0 ? -1 : value > 0 ? 1 : 0;

public int cmp(RubyString other) { /* use Java implementatiom */ return getValue().compareTo(other.getValue()); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/4e8afef0dba3b66a390c9ba70b997174b975fc0e/RubyString.java/clean/src/org/jruby/RubyString.java

IRubyObject result = aref(args);

IRubyObject result = arefWithErrors(args);

public IRubyObject slice_bang(IRubyObject[] args) { int argc = argCount(args, 1, 2); IRubyObject[] newArgs = new IRubyObject[argc + 1]; newArgs[0] = args[0]; if (argc > 1) { newArgs[1] = args[1]; } newArgs[argc] = newString(""); IRubyObject result = aref(args); aset(newArgs); return result; }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/4e8afef0dba3b66a390c9ba70b997174b975fc0e/RubyString.java/clean/src/org/jruby/RubyString.java

RubyString newString = newString(getValue()); return newString.swapcase_bang();

RubyString newString = newString(getValue()); IRubyObject swappedString = newString.swapcase_bang(); if (swappedString.isNil() == true) { return newString; } return (RubyString) swappedString;

public RubyString swapcase() { RubyString newString = newString(getValue()); return newString.swapcase_bang(); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/4e8afef0dba3b66a390c9ba70b997174b975fc0e/RubyString.java/clean/src/org/jruby/RubyString.java

public RubyString swapcase_bang() {

public IRubyObject swapcase_bang() {

public RubyString swapcase_bang() { char[] chars = getValue().toCharArray(); StringBuffer sb = new StringBuffer(chars.length); for (int i = 0; i < chars.length; i++) { if (!Character.isLetter(chars[i])) { sb.append(chars[i]); } else if (Character.isLowerCase(chars[i])) { sb.append(Character.toUpperCase(chars[i])); } else { sb.append(Character.toLowerCase(chars[i])); } } setValue(getValue().toLowerCase()); return this; }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/4e8afef0dba3b66a390c9ba70b997174b975fc0e/RubyString.java/clean/src/org/jruby/RubyString.java

setValue(getValue().toLowerCase());

if (changesMade) { setValue(sb.toString()); return this; }

public RubyString swapcase_bang() { char[] chars = getValue().toCharArray(); StringBuffer sb = new StringBuffer(chars.length); for (int i = 0; i < chars.length; i++) { if (!Character.isLetter(chars[i])) { sb.append(chars[i]); } else if (Character.isLowerCase(chars[i])) { sb.append(Character.toUpperCase(chars[i])); } else { sb.append(Character.toLowerCase(chars[i])); } } setValue(getValue().toLowerCase()); return this; }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/4e8afef0dba3b66a390c9ba70b997174b975fc0e/RubyString.java/clean/src/org/jruby/RubyString.java

return this;

return runtime.getNil();

public RubyString swapcase_bang() { char[] chars = getValue().toCharArray(); StringBuffer sb = new StringBuffer(chars.length); for (int i = 0; i < chars.length; i++) { if (!Character.isLetter(chars[i])) { sb.append(chars[i]); } else if (Character.isLowerCase(chars[i])) { sb.append(Character.toUpperCase(chars[i])); } else { sb.append(Character.toLowerCase(chars[i])); } } setValue(getValue().toLowerCase()); return this; }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/4e8afef0dba3b66a390c9ba70b997174b975fc0e/RubyString.java/clean/src/org/jruby/RubyString.java

runInterpreter(args[i], "command line " + i);

runInterpreter(args[i], "command line " + i, new String[0]);

public static void main (String args[]) { System.out.println(); System.out.println("----------------------------------------------------"); System.out.println("--- WARNING this is an ALPHA version of JRuby!!! ---"); System.out.println("----------------------------------------------------"); System.out.println(); // Benchmark long now = -1; if (args.length == 0) { printUsage(); } else { int lenArg = args.length; for (int i = 0; i < lenArg; i++) { if (args[i].equals("-h") || args[i].equals("-help")) { printUsage(); } else if (args[i].equals("-e")) { if (i++ >= lenArg) { System.err.println("invalid argument " + i); System.err.println(" -e must be followed by an expression to evaluate"); printUsage(); } else { runInterpreter(args[i], "command line " + i); } } else if (args[i].equals("-b")) { // Benchmark now = System.currentTimeMillis(); } else { runInterpreterOnFile(args[i]); } } } // Benchmark if (now != -1) { System.out.println("Runtime: " + (System.currentTimeMillis() - now) + " ms"); } }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/cf644c556d410c47305ebeba5728efa25f7756dc/Main.java/clean/org/jruby/Main.java

runInterpreterOnFile(args[i]);

String[] argv = new String[lenArg - i - 1]; System.arraycopy(args, i + 1, argv, 0, argv.length); runInterpreterOnFile(args[i], argv); break;

public static void main (String args[]) { System.out.println(); System.out.println("----------------------------------------------------"); System.out.println("--- WARNING this is an ALPHA version of JRuby!!! ---"); System.out.println("----------------------------------------------------"); System.out.println(); // Benchmark long now = -1; if (args.length == 0) { printUsage(); } else { int lenArg = args.length; for (int i = 0; i < lenArg; i++) { if (args[i].equals("-h") || args[i].equals("-help")) { printUsage(); } else if (args[i].equals("-e")) { if (i++ >= lenArg) { System.err.println("invalid argument " + i); System.err.println(" -e must be followed by an expression to evaluate"); printUsage(); } else { runInterpreter(args[i], "command line " + i); } } else if (args[i].equals("-b")) { // Benchmark now = System.currentTimeMillis(); } else { runInterpreterOnFile(args[i]); } } } // Benchmark if (now != -1) { System.out.println("Runtime: " + (System.currentTimeMillis() - now) + " ms"); } }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/cf644c556d410c47305ebeba5728efa25f7756dc/Main.java/clean/org/jruby/Main.java

protected static void runInterpreter(String iString2Eval, String iFileName) {

protected static void runInterpreter(String iString2Eval, String iFileName, String[] args) {

protected static void runInterpreter(String iString2Eval, String iFileName) { // Initialize Runtime Ruby ruby = new Ruby(); // Parse and interpret file RubyString rs = RubyString.m_newString(ruby, iString2Eval); // New Version // // ruby.getInterpreter().eval(ruby.getClasses().getObjectClass(), ruby.getRubyParser().compileString(iFileName, rs, 0)); // Old Version // // Initialize Parser parse p = new parse(ruby); ruby.getInterpreter().eval(ruby.getClasses().getObjectClass(), p.rb_compile_string(iFileName, rs, 0)); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/cf644c556d410c47305ebeba5728efa25f7756dc/Main.java/clean/org/jruby/Main.java

ruby.getInterpreter().eval(ruby.getClasses().getObjectClass(), p.rb_compile_string(iFileName, rs, 0));

ruby.getInterpreter().eval(ruby.getRubyTopSelf(), p.rb_compile_string(iFileName, rs, 0));

protected static void runInterpreter(String iString2Eval, String iFileName) { // Initialize Runtime Ruby ruby = new Ruby(); // Parse and interpret file RubyString rs = RubyString.m_newString(ruby, iString2Eval); // New Version // // ruby.getInterpreter().eval(ruby.getClasses().getObjectClass(), ruby.getRubyParser().compileString(iFileName, rs, 0)); // Old Version // // Initialize Parser parse p = new parse(ruby); ruby.getInterpreter().eval(ruby.getClasses().getObjectClass(), p.rb_compile_string(iFileName, rs, 0)); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/cf644c556d410c47305ebeba5728efa25f7756dc/Main.java/clean/org/jruby/Main.java

protected static void runInterpreterOnFile(String fileName) {

protected static void runInterpreterOnFile(String fileName, String[] args) {

protected static void runInterpreterOnFile(String fileName) { File rubyFile = new File(fileName); if (!rubyFile.canRead()) { System.out.println("Cannot read Rubyfile: \"" + fileName + "\""); } else { try { StringBuffer sb = new StringBuffer((int)rubyFile.length()); BufferedReader br = new BufferedReader(new FileReader(rubyFile)); String line; while ((line = br.readLine()) != null) { sb.append(line).append('\n'); } br.close(); runInterpreter(sb.toString(), fileName); } catch (IOException ioExcptn) { System.out.println("Cannot read Rubyfile: \"" + fileName + "\""); System.out.println("IOEception: " + ioExcptn.getMessage()); } } }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/cf644c556d410c47305ebeba5728efa25f7756dc/Main.java/clean/org/jruby/Main.java

runInterpreter(sb.toString(), fileName);

runInterpreter(sb.toString(), fileName, args);

protected static void runInterpreterOnFile(String fileName) { File rubyFile = new File(fileName); if (!rubyFile.canRead()) { System.out.println("Cannot read Rubyfile: \"" + fileName + "\""); } else { try { StringBuffer sb = new StringBuffer((int)rubyFile.length()); BufferedReader br = new BufferedReader(new FileReader(rubyFile)); String line; while ((line = br.readLine()) != null) { sb.append(line).append('\n'); } br.close(); runInterpreter(sb.toString(), fileName); } catch (IOException ioExcptn) { System.out.println("Cannot read Rubyfile: \"" + fileName + "\""); System.out.println("IOEception: " + ioExcptn.getMessage()); } } }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/cf644c556d410c47305ebeba5728efa25f7756dc/Main.java/clean/org/jruby/Main.java

item.setCacheEnabled(false);

private UIComponent getPreviewPanel() { String ref = ARTICLE_ITEM_BEAN_ID + "."; WFComponentSelector cs = new WFComponentSelector(); cs.setId(COMPONENT_SELECTOR_ID); HtmlPanelGrid p = WFPanelUtil.getPlainFormPanel(1); p.setId(NO_ARTICLE_ID); p.getChildren().add(WFResourceUtil.getResourceUtilArticle().getHeaderTextVB("no_article_selected")); cs.add(p); ArticleItemViewer item = new ArticleItemViewer(); item.setId(ARTICLE_VIEW_ID); WFUtil.setValueBinding(item, "author", ref+"author"); WFUtil.setValueBinding(item, "creation_date", ref+"creationDate"); WFUtil.setValueBinding(item, "headline", ref+"headline"); WFUtil.setValueBinding(item, "teaser", ref+"teaser"); WFUtil.setValueBinding(item, "body", ref+"body"); cs.add(item); cs.setSelectedId(NO_ARTICLE_ID, true); return cs; }

57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/18f3f17c7d7e21ff910a232da3187e72e9de9847/ArticlePreview.java/clean/src/java/com/idega/block/article/component/ArticlePreview.java

String headline = WFUtil.getStringValue(ARTICLE_ITEM_BEAN_ID, "headline");

ArticleItemBean articleBean = (ArticleItemBean) WFUtil.getBeanInstance(ARTICLE_ITEM_BEAN_ID); String headline = articleBean.getHeadline();

private void selectComponent() { WFComponentSelector cs = (WFComponentSelector) findComponent(COMPONENT_SELECTOR_ID); String headline = WFUtil.getStringValue(ARTICLE_ITEM_BEAN_ID, "headline"); if (cs != null) { if (headline == null || headline.length() == 0) { cs.setSelectedId(NO_ARTICLE_ID, true); cs.setSelectedId(ARTICLE_VIEW_ID, false); }else { cs.setSelectedId(NO_ARTICLE_ID, false); cs.setSelectedId(ARTICLE_VIEW_ID, true); } }else { cs.setSelectedId(NO_ARTICLE_ID, false); cs.setSelectedId(ARTICLE_VIEW_ID, true); System.out.println("Could not find the Component selector!!!"); } }

57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/18f3f17c7d7e21ff910a232da3187e72e9de9847/ArticlePreview.java/clean/src/java/com/idega/block/article/component/ArticlePreview.java

fw.reset(out);

if (fw != null) { fw.reset(out); return fw; }

public static FastWriter getInstance(OutputStream out, String encoding) throws UnsupportedEncodingException { FastWriter fw = null; SimpleStack ss = (SimpleStack) _writerCache.get(encoding); if (ss != null) { fw = (FastWriter) ss.pop(); fw.reset(out); } if (fw == null) { fw = new FastWriter(out,encoding); } return fw; }

52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/cb054e2b23a228172377a547332c169ee70338d4/FastWriter.java/clean/webmacro/src/org/webmacro/FastWriter.java

if (fw == null) { fw = new FastWriter(out,encoding); } return fw;

return new FastWriter(out,encoding);

public static FastWriter getInstance(OutputStream out, String encoding) throws UnsupportedEncodingException { FastWriter fw = null; SimpleStack ss = (SimpleStack) _writerCache.get(encoding); if (ss != null) { fw = (FastWriter) ss.pop(); fw.reset(out); } if (fw == null) { fw = new FastWriter(out,encoding); } return fw; }

52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/cb054e2b23a228172377a547332c169ee70338d4/FastWriter.java/clean/webmacro/src/org/webmacro/FastWriter.java

} else if (obj instanceof HashMap) {

} else if (obj instanceof Map) {

Object clean(Object obj) { //TODO push OMEModel down into all calls if (null != obj) { if (obj instanceof OMEModel) { daoUtils.clean((OMEModel) obj); } else if (obj instanceof Set) { daoUtils.clean((Set) obj); } else if (obj instanceof HashMap) { //daoUtils.clean(((Map) obj).keySet());TODO here only integers, but... daoUtils.clean(new HashSet(((Map) obj).values())); } else { String msg = "Instances of " + obj.getClass().getName() + " not supported."; throw new IllegalArgumentException(msg); } } return obj; }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/5e29e25bb21b2a51d4b44f9fd80b5b876b782887/HierarchyBrowsingImpl.java/clean/components/server/src/org/openmicroscopy/omero/logic/HierarchyBrowsingImpl.java

return sortDatasetAnnotations(result);

return (Map) clean(sortDatasetAnnotations(result));

public Map findDatasetAnnotationsForExperimenter(final Set arg0, final int arg1) { // CONTRACT if (null == arg0 || arg0.size() == 0) { return new HashMap(); } List result = annotationDao.findDataListAnnotationForExperimenter(arg0, arg1); return sortDatasetAnnotations(result); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/5e29e25bb21b2a51d4b44f9fd80b5b876b782887/HierarchyBrowsingImpl.java/clean/components/server/src/org/openmicroscopy/omero/logic/HierarchyBrowsingImpl.java

return RubyArray.create(this, new IRubyObject[] { begin(index), end(index)});

return RubyArray.newArray(getRuntime(), new IRubyObject[] { begin(index), end(index)});

public IRubyObject offset(RubyFixnum index) { if (outOfBounds(index)) { return getRuntime().getNil(); } return RubyArray.create(this, new IRubyObject[] { begin(index), end(index)}); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/3acff782b00a5f6892fe6bd44e0665cc6194f9aa/RubyMatchData.java/clean/org/jruby/RubyMatchData.java

assertFalse(none.isGranted(USER, USE));

public void testCopyConstructor() throws Exception { Permissions p1 = new Permissions(); p1.revoke(GROUP, WRITE); assertFalse(p1.isGranted(GROUP, WRITE)); Permissions p2 = new Permissions(p1); assertFalse(p2.isGranted(GROUP, WRITE)); Permissions none = new Permissions(Permissions.EMPTY); assertFalse(none.isGranted(USER, READ)); assertFalse(none.isGranted(USER, WRITE)); assertFalse(none.isGranted(USER, USE)); assertFalse(none.isGranted(GROUP, READ)); assertFalse(none.isGranted(GROUP, WRITE)); assertFalse(none.isGranted(GROUP, USE)); assertFalse(none.isGranted(WORLD, READ)); assertFalse(none.isGranted(WORLD, WRITE)); assertFalse(none.isGranted(WORLD, USE)); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ef6436b412344c22aec4fc69cd3a0dab5bcd6249/PermissionsTest.java/buggy/components/common/test/ome/model/utests/PermissionsTest.java

assertFalse(none.isGranted(GROUP, USE));

public void testCopyConstructor() throws Exception { Permissions p1 = new Permissions(); p1.revoke(GROUP, WRITE); assertFalse(p1.isGranted(GROUP, WRITE)); Permissions p2 = new Permissions(p1); assertFalse(p2.isGranted(GROUP, WRITE)); Permissions none = new Permissions(Permissions.EMPTY); assertFalse(none.isGranted(USER, READ)); assertFalse(none.isGranted(USER, WRITE)); assertFalse(none.isGranted(USER, USE)); assertFalse(none.isGranted(GROUP, READ)); assertFalse(none.isGranted(GROUP, WRITE)); assertFalse(none.isGranted(GROUP, USE)); assertFalse(none.isGranted(WORLD, READ)); assertFalse(none.isGranted(WORLD, WRITE)); assertFalse(none.isGranted(WORLD, USE)); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ef6436b412344c22aec4fc69cd3a0dab5bcd6249/PermissionsTest.java/buggy/components/common/test/ome/model/utests/PermissionsTest.java

assertFalse(none.isGranted(WORLD, USE));

public void testCopyConstructor() throws Exception { Permissions p1 = new Permissions(); p1.revoke(GROUP, WRITE); assertFalse(p1.isGranted(GROUP, WRITE)); Permissions p2 = new Permissions(p1); assertFalse(p2.isGranted(GROUP, WRITE)); Permissions none = new Permissions(Permissions.EMPTY); assertFalse(none.isGranted(USER, READ)); assertFalse(none.isGranted(USER, WRITE)); assertFalse(none.isGranted(USER, USE)); assertFalse(none.isGranted(GROUP, READ)); assertFalse(none.isGranted(GROUP, WRITE)); assertFalse(none.isGranted(GROUP, USE)); assertFalse(none.isGranted(WORLD, READ)); assertFalse(none.isGranted(WORLD, WRITE)); assertFalse(none.isGranted(WORLD, USE)); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ef6436b412344c22aec4fc69cd3a0dab5bcd6249/PermissionsTest.java/buggy/components/common/test/ome/model/utests/PermissionsTest.java

revokeGrantCheck(USER, USE);

public void testGrantAndRevokePermissions() throws Exception { revokeGrantCheck(USER, READ); revokeGrantCheck(USER, WRITE); revokeGrantCheck(USER, USE); revokeGrantCheck(GROUP, READ); revokeGrantCheck(GROUP, WRITE); revokeGrantCheck(GROUP, USE); revokeGrantCheck(WORLD, READ); revokeGrantCheck(WORLD, WRITE); revokeGrantCheck(WORLD, USE); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ef6436b412344c22aec4fc69cd3a0dab5bcd6249/PermissionsTest.java/buggy/components/common/test/ome/model/utests/PermissionsTest.java

revokeGrantCheck(GROUP, USE);

public void testGrantAndRevokePermissions() throws Exception { revokeGrantCheck(USER, READ); revokeGrantCheck(USER, WRITE); revokeGrantCheck(USER, USE); revokeGrantCheck(GROUP, READ); revokeGrantCheck(GROUP, WRITE); revokeGrantCheck(GROUP, USE); revokeGrantCheck(WORLD, READ); revokeGrantCheck(WORLD, WRITE); revokeGrantCheck(WORLD, USE); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ef6436b412344c22aec4fc69cd3a0dab5bcd6249/PermissionsTest.java/buggy/components/common/test/ome/model/utests/PermissionsTest.java

revokeGrantCheck(WORLD, USE);

public void testGrantAndRevokePermissions() throws Exception { revokeGrantCheck(USER, READ); revokeGrantCheck(USER, WRITE); revokeGrantCheck(USER, USE); revokeGrantCheck(GROUP, READ); revokeGrantCheck(GROUP, WRITE); revokeGrantCheck(GROUP, USE); revokeGrantCheck(WORLD, READ); revokeGrantCheck(WORLD, WRITE); revokeGrantCheck(WORLD, USE); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ef6436b412344c22aec4fc69cd3a0dab5bcd6249/PermissionsTest.java/buggy/components/common/test/ome/model/utests/PermissionsTest.java

assertTrue(p.isGranted(USER, USE));

public void testSimplePermissionsAllowsEverything() throws Exception { assertTrue(p.isGranted(USER, READ)); assertTrue(p.isGranted(USER, WRITE)); assertTrue(p.isGranted(USER, USE)); assertTrue(p.isGranted(GROUP, READ)); assertTrue(p.isGranted(GROUP, WRITE)); assertTrue(p.isGranted(GROUP, USE)); assertTrue(p.isGranted(WORLD, READ)); assertTrue(p.isGranted(WORLD, WRITE)); assertTrue(p.isGranted(WORLD, USE)); // assertTrue( p.isGranted(ALL, READ) ); // assertTrue( p.isGranted(ALL, WRITE) ); // assertTrue( p.isGranted(ALL, USE) ); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ef6436b412344c22aec4fc69cd3a0dab5bcd6249/PermissionsTest.java/buggy/components/common/test/ome/model/utests/PermissionsTest.java

assertTrue(p.isGranted(GROUP, USE));

public void testSimplePermissionsAllowsEverything() throws Exception { assertTrue(p.isGranted(USER, READ)); assertTrue(p.isGranted(USER, WRITE)); assertTrue(p.isGranted(USER, USE)); assertTrue(p.isGranted(GROUP, READ)); assertTrue(p.isGranted(GROUP, WRITE)); assertTrue(p.isGranted(GROUP, USE)); assertTrue(p.isGranted(WORLD, READ)); assertTrue(p.isGranted(WORLD, WRITE)); assertTrue(p.isGranted(WORLD, USE)); // assertTrue( p.isGranted(ALL, READ) ); // assertTrue( p.isGranted(ALL, WRITE) ); // assertTrue( p.isGranted(ALL, USE) ); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ef6436b412344c22aec4fc69cd3a0dab5bcd6249/PermissionsTest.java/buggy/components/common/test/ome/model/utests/PermissionsTest.java

assertTrue(p.isGranted(WORLD, USE));

public void testSimplePermissionsAllowsEverything() throws Exception { assertTrue(p.isGranted(USER, READ)); assertTrue(p.isGranted(USER, WRITE)); assertTrue(p.isGranted(USER, USE)); assertTrue(p.isGranted(GROUP, READ)); assertTrue(p.isGranted(GROUP, WRITE)); assertTrue(p.isGranted(GROUP, USE)); assertTrue(p.isGranted(WORLD, READ)); assertTrue(p.isGranted(WORLD, WRITE)); assertTrue(p.isGranted(WORLD, USE)); // assertTrue( p.isGranted(ALL, READ) ); // assertTrue( p.isGranted(ALL, WRITE) ); // assertTrue( p.isGranted(ALL, USE) ); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ef6436b412344c22aec4fc69cd3a0dab5bcd6249/PermissionsTest.java/buggy/components/common/test/ome/model/utests/PermissionsTest.java

bitCompare(USER, USE);

public void testToBits() throws Exception { bitCompare(USER, READ); bitCompare(USER, WRITE); bitCompare(USER, USE); bitCompare(GROUP, READ); bitCompare(GROUP, WRITE); bitCompare(GROUP, USE); bitCompare(WORLD, READ); bitCompare(WORLD, WRITE); bitCompare(WORLD, USE); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ef6436b412344c22aec4fc69cd3a0dab5bcd6249/PermissionsTest.java/buggy/components/common/test/ome/model/utests/PermissionsTest.java

bitCompare(GROUP, USE);

public void testToBits() throws Exception { bitCompare(USER, READ); bitCompare(USER, WRITE); bitCompare(USER, USE); bitCompare(GROUP, READ); bitCompare(GROUP, WRITE); bitCompare(GROUP, USE); bitCompare(WORLD, READ); bitCompare(WORLD, WRITE); bitCompare(WORLD, USE); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ef6436b412344c22aec4fc69cd3a0dab5bcd6249/PermissionsTest.java/buggy/components/common/test/ome/model/utests/PermissionsTest.java

bitCompare(WORLD, USE);

public void testToBits() throws Exception { bitCompare(USER, READ); bitCompare(USER, WRITE); bitCompare(USER, USE); bitCompare(GROUP, READ); bitCompare(GROUP, WRITE); bitCompare(GROUP, USE); bitCompare(WORLD, READ); bitCompare(WORLD, WRITE); bitCompare(WORLD, USE); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ef6436b412344c22aec4fc69cd3a0dab5bcd6249/PermissionsTest.java/buggy/components/common/test/ome/model/utests/PermissionsTest.java

p.revoke(GROUP, USE,READ,WRITE);

p.revoke(GROUP, READ,WRITE);

public void testVarArgs() throws Exception { p.revoke(GROUP, USE,READ,WRITE); assertFalse( p.isGranted(GROUP, READ)); assertFalse( p.isGranted(GROUP, WRITE)); assertFalse( p.isGranted(GROUP, USE)); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ef6436b412344c22aec4fc69cd3a0dab5bcd6249/PermissionsTest.java/buggy/components/common/test/ome/model/utests/PermissionsTest.java

assertFalse( p.isGranted(GROUP, USE));

public void testVarArgs() throws Exception { p.revoke(GROUP, USE,READ,WRITE); assertFalse( p.isGranted(GROUP, READ)); assertFalse( p.isGranted(GROUP, WRITE)); assertFalse( p.isGranted(GROUP, USE)); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ef6436b412344c22aec4fc69cd3a0dab5bcd6249/PermissionsTest.java/buggy/components/common/test/ome/model/utests/PermissionsTest.java

DataHandler dh = model.annotateDataObjects(nodes);

DataHandler dh = model.annotateDataObjects(view, nodes);

public void annotate(TreeImageDisplay[] nodes) { if (model.getState() == DISCARDED) throw new IllegalStateException("This method cannot be invoked " + "in the DISCARDED state."); if (nodes == null) throw new IllegalArgumentException("No dataObject to annotate"); if (nodes.length == 1) { PropertiesCmd cmd = new PropertiesCmd(this); cmd.execute(); return; } DataHandler dh = model.annotateDataObjects(nodes); dh.addPropertyChangeListener(controller); dh.activate(); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/464efde90db6bc5095c0a7e5952f51ad0f37ca86/TreeViewerComponent.java/clean/SRC/org/openmicroscopy/shoola/agents/treeviewer/view/TreeViewerComponent.java

firePropertyChange(THUMBNAIL_LOADED_PROPERTY, null, thumbnail);

model.getEditor().setThumbnail(thumbnail);

public void setThumbnail(BufferedImage thumbnail) { if (model.getState() == LOADING_THUMBNAIL) { model.setState(READY); if (thumbnail != null) firePropertyChange(THUMBNAIL_LOADED_PROPERTY, null, thumbnail); fireStateChange(); } }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/464efde90db6bc5095c0a7e5952f51ad0f37ca86/TreeViewerComponent.java/clean/SRC/org/openmicroscopy/shoola/agents/treeviewer/view/TreeViewerComponent.java

DataHandler dh = model.classifyImageObjects(images, mode);

DataHandler dh = model.classifyImageObjects(view, images, mode);

public void showClassifier(ImageData[] images, int mode) { switch (model.getState()) { //case READY: case DISCARDED: throw new IllegalStateException("This method should cannot " + "be invoked in the DISCARDED state."); } if (images == null) throw new IllegalArgumentException("Object cannot be null."); if (images.length == 0) throw new IllegalArgumentException("No images to classify or " + "declassify."); DataHandler dh = model.classifyImageObjects(images, mode); dh.addPropertyChangeListener(controller); dh.activate(); /* model.cancel(); // cancel annotation loader or thumbnail loader removeEditor(); model.setEditorType(CLASSIFIER_EDITOR); Classifier classifier = ClassifierFactory.getClassifier(this, mode, images); classifier.addPropertyChangeListener(controller); classifier.activate(); view.addComponent(classifier.getUI()); */ }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/464efde90db6bc5095c0a7e5952f51ad0f37ca86/TreeViewerComponent.java/clean/SRC/org/openmicroscopy/shoola/agents/treeviewer/view/TreeViewerComponent.java

defineMethod("binding", Arity.noArguments(), "binding");

protected void initializeClass() { defineMethod("arity", Arity.noArguments(), "arity"); defineMethod("call", Arity.optional(), "call"); defineAlias("[]", "call"); defineMethod("to_proc", Arity.noArguments(), "to_proc"); defineSingletonMethod("new", Arity.optional(), "newInstance"); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/62395b140d1fb0b5b75ba224eb0f4b564f70979b/ProcMetaClass.java/buggy/src/org/jruby/runtime/builtin/meta/ProcMetaClass.java

thumbnails.add(thumb.getImageFor(node));

thumbnails.add(thumb.getDisplayedImage());

public void visit(ImageNode node) { Thumbnail thumb = node.getThumbnail(); thumbnails.add(thumb.getImageFor(node)); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/2509d546984c0580d2b4a547fed842ec745b87b2/SaveThumbnailsVisitor.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/cmd/SaveThumbnailsVisitor.java

public PDILoader(HiViewer viewer, Set images)

public PDILoader(HiViewer viewer, Set images, boolean refresh)

public PDILoader(HiViewer viewer, Set images) { super(viewer); this.images = images; }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fb3743d6f75abbf12f788b3b2925f4a6f4606dd6/PDILoader.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/PDILoader.java

this.refresh = refresh;

public PDILoader(HiViewer viewer, Set images) { super(viewer); this.images = images; }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fb3743d6f75abbf12f788b3b2925f4a6f4606dd6/PDILoader.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/PDILoader.java

viewer.setHierarchyRoots((Set) result, false);

viewer.setHierarchyRoots((Set) result, false, refresh);

public void handleResult(Object result) { if (viewer.getState() == HiViewer.DISCARDED) return; //Async cancel. viewer.setHierarchyRoots((Set) result, false); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fb3743d6f75abbf12f788b3b2925f4a6f4606dd6/PDILoader.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/PDILoader.java

scanner = new StringScanner(((RubyString)args[0]).getValue());

scanner = new StringScanner(args[0].convertToString().getValue());

public IRubyObject initialize(IRubyObject[] args) { if (checkArgumentCount(args, 0, 2) > 0) { scanner = new StringScanner(((RubyString)args[0]).getValue()); } else { scanner = new StringScanner(); } return this; }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/ea4e25f1262c817873877b14c2a82825f1420dd0/RubyStringScanner.java/buggy/src/org/jruby/RubyStringScanner.java

if (proxy.searchMethod(methodName) == UndefinedMethod.getInstance()) {

if (!methodName.equals("class")) {

private void define_instance_method_for_proxy(final RubyClass proxy, List names, final RubyArray methods) { final RubyModule javaUtilities = getRuntime().getModule("JavaUtilities"); Callback method = new Callback() { public IRubyObject execute(IRubyObject self, IRubyObject[] args) { IRubyObject[] argsArray = new IRubyObject[args.length + 1]; argsArray[0] = self.callMethod("java_object"); RubyArray argsAsArray = getRuntime().newArray(); for (int j = 0; j < args.length; j++) { argsArray[j+1] = Java.ruby_to_java(proxy, args[j]); argsAsArray.append(argsArray[j+1]); } IRubyObject[] mmArgs = new IRubyObject[] {methods, argsAsArray}; IRubyObject result = javaUtilities.callMethod("matching_method", mmArgs); return Java.java_to_ruby(self, result.callMethod("invoke", argsArray)); } public Arity getArity() { return Arity.optional(); } }; for(Iterator iter = names.iterator(); iter.hasNext(); ) { String methodName = (String) iter.next(); // Do not override a built-in Ruby method. This begs a question or two... if (proxy.searchMethod(methodName) == UndefinedMethod.getInstance()) { proxy.defineMethod(methodName, method); } } }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/6c72dd872794347590986a952270341cce06e028/JavaClass.java/buggy/src/org/jruby/javasupport/JavaClass.java

LogSystem.removeInstance(_ls);

public synchronized void stopClient() { if ( --_count == 0 ) { shutdown(); } }

52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/eaf4eda3d1dc696e065fa02b661b072950526e26/Broker.java/clean/webmacro/src/org/webmacro/Broker.java

_servletContext.log(e, _mf.format(_args));

_servletContext.log(_mf.format(_args),e);

public void log(Date date, String name, String level, String message, Exception e) { synchronized(_args) { _args[0] = date; _args[1] = name; _args[2] = level; _args[3] = message; if (e == null) _servletContext.log(_mf.format(_args)); else _servletContext.log(e, _mf.format(_args)); } }

52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/4603f6cee8b46d51274d6e6b533212c93f0fb160/ServletLog.java/clean/webmacro/src/org/webmacro/servlet/ServletLog.java

public UIComponent getEditContainer() { IWContext iwc = IWContext.getInstance(); WFResourceUtil localizer = WFResourceUtil.getResourceUtilArticle(); String ref = ARTICLE_ITEM_BEAN_ID + ".";// String bref = WFPage.CONTENT_BUNDLE + "."; WFContainer mainContainer = new WFContainer(); mainContainer.setId(ARTICLE_EDITOR_ID); WFErrorMessages em = new WFErrorMessages(); em.addErrorMessage(HEADLINE_ID); em.addErrorMessage(TEASER_ID);// em.addErrorMessage(PUBLISHED_FROM_DATE_ID);// em.addErrorMessage(PUBLISHED_TO_DATE_ID); em.addErrorMessage(SAVE_ID); mainContainer.add(em); HtmlPanelGrid p = WFPanelUtil.getPlainFormPanel(2); //Language dropdown p.getChildren().add(WFUtil.group(localizer.getTextVB("language"), WFUtil.getText(":"))); Iterator iter = ICLocaleBusiness.getListOfLocalesJAVA().iterator(); HtmlSelectOneMenu langDropdown = new HtmlSelectOneMenu(); List arrayList = new ArrayList(); while(iter.hasNext()) { Locale locale = (Locale)iter.next(); String keyStr = locale.getLanguage(); String langStr = locale.getDisplayLanguage(); SelectItem itemTemp = new SelectItem(keyStr, langStr, keyStr, false); arrayList.add(itemTemp); } UISelectItems items = new UISelectItems(); items.setValue(arrayList); langDropdown.getChildren().add(items); ValueBinding vb = WFUtil.createValueBinding("#{" + ref +"contentLanguage" + "}"); langDropdown.setValueBinding("value", vb); langDropdown.getValue(); langDropdown.addValueChangeListener(this); langDropdown.setImmediate(true); langDropdown.setOnchange("submit();"); p.getChildren().add(langDropdown); p.getChildren().add(WFUtil.group(localizer.getTextVB("headline"), WFUtil.getText(":")));// p.getChildren().add(WFUtil.group(WFUtil.getTextVB(bref + "language"), WFUtil.getText(":"))); HtmlInputText headlineInput = WFUtil.getInputText(HEADLINE_ID, ref + "headline"); headlineInput.setSize(70); p.getChildren().add(headlineInput); //HtmlSelectOneMenu localeMenu = WFUtil.getSelectOneMenu(LOCALE_ID, ref + "allLocales", ref + "pendingLocaleId"); //localeMenu.setOnchange("document.forms[0].submit();"); //p.getChildren().add(localeMenu); p.getChildren().add(WFUtil.group(localizer.getTextVB("author"), WFUtil.getText(":"))); HtmlInputText authorInput = WFUtil.getInputText(AUTHOR_ID, ref + "author"); authorInput.setSize(70); User user = iwc.getCurrentUser(); if(user!=null){ String userName = user.getName(); getArticleItemBean().setAuthor(userName); } p.getChildren().add(authorInput); //Article body p.getChildren().add(WFUtil.group(localizer.getTextVB("body"), WFUtil.getText(":"))); HTMLArea bodyArea = WFUtil.getHtmlAreaTextArea(BODY_ID, ref + "body", "500px", "400px"); //HTMLArea bodyArea = WFUtil.getHtmlAreaTextArea(BODY_ID, ref + "body"); /*bodyArea.addPlugin(HTMLArea.PLUGIN_TABLE_OPERATIONS); bodyArea.addPlugin(HTMLArea.PLUGIN_DYNAMIC_CSS, "3"); bodyArea.addPlugin(HTMLArea.PLUGIN_CSS, "3"); bodyArea.addPlugin(HTMLArea.PLUGIN_CONTEXT_MENU); bodyArea.addPlugin(HTMLArea.PLUGIN_LIST_TYPE); bodyArea.addPlugin(HTMLArea.PLUGIN_CHARACTER_MAP); */ bodyArea.setAllowFontSelection(false); p.getChildren().add(WFUtil.group(bodyArea, WFUtil.getBreak())); p.getChildren().add(WFUtil.group(localizer.getTextVB("teaser"), WFUtil.getText(":"))); HtmlInputTextarea teaserArea = WFUtil.getTextArea(TEASER_ID, ref + "teaser", "500px", "60px"); p.getChildren().add(teaserArea); p.getChildren().add(WFUtil.group(localizer.getTextVB("source"), WFUtil.getText(":"))); HtmlInputText sourceArea = WFUtil.getInputText(AUTHOR_ID, ref + "source"); sourceArea.setSize(70); p.getChildren().add(sourceArea); p.getChildren().add(WFUtil.getBreak()); p.getChildren().add(WFUtil.getBreak()); // p = WFPanelUtil.getPlainFormPanel(1);/* p.getChildren().add(WFUtil.group(WFUtil.getHeaderTextVB(bref + "created"), WFUtil.getTextVB(ref + "creationDate") ));*/// p.getChildren().add(WFUtil.getText(" "));// UIComponent t = WFUtil.group(localizer.getHeaderTextVB("status"), WFUtil.getText(": "));// t.getChildren().add(WFUtil.getTextVB(ref + "status"));// p.getChildren().add(t); p.getChildren().add(WFUtil.group(localizer.getTextVB("status"), WFUtil.getText(":"))); p.getChildren().add(WFUtil.getTextVB(ref + "status")); p.getChildren().add(WFUtil.group(localizer.getTextVB("current_version"), WFUtil.getText(":"))); p.getChildren().add(WFUtil.getTextVB(ref + "versionName")); p.getChildren().add(WFUtil.getBreak()); p.getChildren().add(WFUtil.getBreak()); // p = WFPanelUtil.getFormPanel(2); p.getChildren().add(WFUtil.group(localizer.getTextVB("comment"), WFUtil.getText(":")));// p.getChildren().add(WFUtil.group(WFUtil.getTextVB(bref + "attachments"), WFUtil.getText(":"))); HtmlInputTextarea commentArea = WFUtil.getTextArea(COMMENT_ID, ref + "comment", "500px", "60px"); p.getChildren().add(commentArea);// WFContainer attachmentContainer = new WFContainer();// attachmentContainer.add(WFUtil.getButtonVB(ADD_ATTACHMENT_ID, bref + "add_attachment", this));// attachmentContainer.add(WFUtil.getBreak());// attachmentContainer.add(getAttachmentList());// p.getChildren().add(attachmentContainer); // mainContainer.add(p); // p = WFPanelUtil.getFormPanel(1);// p.getChildren().add(WFUtil.group(WFUtil.getTextVB(bref + "related_content_items"), WFUtil.getText(":"))); // WFContainer contentItemContainer = new WFContainer(); // contentItemContainer.add(WFUtil.getButtonVB(ADD_RELATED_CONTENT_ITEM_ID, bref + "add_content_item", this));// contentItemContainer.add(WFUtil.getBreak());// contentItemContainer.add(getRelatedContentItemsList());// p.getChildren().add(contentItemContainer);// p.getChildren().add(WFUtil.group(WFUtil.getTextVB(bref + "publishing_date"), WFUtil.getText(":"))); // WFDateInput publishedFromInput = WFUtil.getDateInput(PUBLISHED_FROM_DATE_ID, ref + "case.publishedFromDate");// publishedFromInput.setShowTime(true);// p.getChildren().add(publishedFromInput);// p.getChildren().add(WFUtil.group(WFUtil.getTextVB(bref + "expiration_date"), WFUtil.getText(":"))); // WFDateInput publishedToInput = WFUtil.getDateInput(PUBLISHED_TO_DATE_ID, ref + "case.publishedToDate");// publishedToInput.setShowTime(true);// p.getChildren().add(publishedToInput); // mainContainer.add(p); p.getChildren().add(WFUtil.getBreak()); p.getChildren().add(WFUtil.getBreak());// mainContainer.add(WFUtil.getBreak());// p = WFPanelUtil.getPlainFormPanel(1);// HtmlCommandButton editCategoriesButton = WFUtil.getButtonVB(EDIT_CATEGORIES_ID, bref + "edit_categories", this);// p.getChildren().add(editCategoriesButton); //Temporary taking away folderr location/* p.getChildren().add(WFUtil.group(localizer.getTextVB("folder"), WFUtil.getText(":"))); HtmlInputText folderInput = WFUtil.getInputText(FOLDER_ID, ref + "folderLocation"); if(null==folderInput.getValue() || "".equals(folderInput.getValue())) { String FolderString = ArticleUtil.getArticleYearMonthPath();// System.out.println("Folder "+FolderString); folderInput.setValue(FolderString); } else { File file = new File(folderInput.getValue().toString()); folderInput.setValue(file.getParentFile().getParent()); } folderInput.setSize(70); p.getChildren().add(folderInput); */ p.getChildren().add(WFUtil.getBreak()); //Categories// WebDAVCategories categoriesUI = new WebDAVCategories(); ArticleItemBean articleItemBean = (ArticleItemBean) WFUtil.getBeanInstance(ARTICLE_ITEM_BEAN_ID); String resourcePath = articleItemBean.getArticleResourcePath(); categoriesUI.setResourcePath(resourcePath); p.getChildren().add(categoriesUI); p.getChildren().add(WFUtil.getBreak()); p.getChildren().add(WFUtil.getBreak()); p.getChildren().add(WFUtil.getBreak());// WFComponentSelector cs = new WFComponentSelector();// cs.setId(BUTTON_SELECTOR_ID);// cs.setDividerText(" "); HtmlCommandButton saveButton = localizer.getButtonVB(SAVE_ID, "save", this);// HtmlCommandButton saveButton = WFUtil.getButtonVB(SAVE_ID, WFPage.CONTENT_BUNDLE + "save", this);// cs.add(saveButton);// cs.add(WFUtil.getButtonVB(FOR_REVIEW_ID, bref + "for_review", this));// cs.add(WFUtil.getButtonVB(PUBLISH_ID, bref + "publish", this));// cs.add(WFUtil.getButtonVB(REWRITE_ID, bref + "rewrite", this));// cs.add(WFUtil.getButtonVB(REJECT_ID, bref + "reject", this));// cs.add(WFUtil.getButtonVB(DELETE_ID, bref + "delete", this));// cs.add(WFUtil.getButtonVB(CANCEL_ID, bref + "cancel", this));// cs.setSelectedId(CANCEL_ID, true);// p.getChildren().add(cs); p.getChildren().add(saveButton); mainContainer.add(p); WFComponentSelector editorSelector = new WFComponentSelector(); editorSelector.setId(EDITOR_SELECTOR_ID); editorSelector.add(mainContainer); editorSelector.add(getCategoryEditContainer());// FileUploadForm f = new FileUploadForm(this, FILE_UPLOAD_ID, FILE_UPLOAD_CANCEL_ID); editorSelector.add(getRelatedContentItemsContainer()); editorSelector.setSelectedId(ARTICLE_EDITOR_ID, true); return editorSelector; }

57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/82093f7731a5d1d2d6298791315369b8e96be576/EditArticleView.java/buggy/src/java/com/idega/block/article/component/EditArticleView.java

HtmlInputText sourceArea = WFUtil.getInputText(AUTHOR_ID, ref + "source");

HtmlInputText sourceArea = WFUtil.getInputText(SOURCE_ID, ref + "source");

public UIComponent getEditContainer() { IWContext iwc = IWContext.getInstance(); WFResourceUtil localizer = WFResourceUtil.getResourceUtilArticle(); String ref = ARTICLE_ITEM_BEAN_ID + ".";// String bref = WFPage.CONTENT_BUNDLE + "."; WFContainer mainContainer = new WFContainer(); mainContainer.setId(ARTICLE_EDITOR_ID); WFErrorMessages em = new WFErrorMessages(); em.addErrorMessage(HEADLINE_ID); em.addErrorMessage(TEASER_ID);// em.addErrorMessage(PUBLISHED_FROM_DATE_ID);// em.addErrorMessage(PUBLISHED_TO_DATE_ID); em.addErrorMessage(SAVE_ID); mainContainer.add(em); HtmlPanelGrid p = WFPanelUtil.getPlainFormPanel(2); //Language dropdown p.getChildren().add(WFUtil.group(localizer.getTextVB("language"), WFUtil.getText(":"))); Iterator iter = ICLocaleBusiness.getListOfLocalesJAVA().iterator(); HtmlSelectOneMenu langDropdown = new HtmlSelectOneMenu(); List arrayList = new ArrayList(); while(iter.hasNext()) { Locale locale = (Locale)iter.next(); String keyStr = locale.getLanguage(); String langStr = locale.getDisplayLanguage(); SelectItem itemTemp = new SelectItem(keyStr, langStr, keyStr, false); arrayList.add(itemTemp); } UISelectItems items = new UISelectItems(); items.setValue(arrayList); langDropdown.getChildren().add(items); ValueBinding vb = WFUtil.createValueBinding("#{" + ref +"contentLanguage" + "}"); langDropdown.setValueBinding("value", vb); langDropdown.getValue(); langDropdown.addValueChangeListener(this); langDropdown.setImmediate(true); langDropdown.setOnchange("submit();"); p.getChildren().add(langDropdown); p.getChildren().add(WFUtil.group(localizer.getTextVB("headline"), WFUtil.getText(":")));// p.getChildren().add(WFUtil.group(WFUtil.getTextVB(bref + "language"), WFUtil.getText(":"))); HtmlInputText headlineInput = WFUtil.getInputText(HEADLINE_ID, ref + "headline"); headlineInput.setSize(70); p.getChildren().add(headlineInput); //HtmlSelectOneMenu localeMenu = WFUtil.getSelectOneMenu(LOCALE_ID, ref + "allLocales", ref + "pendingLocaleId"); //localeMenu.setOnchange("document.forms[0].submit();"); //p.getChildren().add(localeMenu); p.getChildren().add(WFUtil.group(localizer.getTextVB("author"), WFUtil.getText(":"))); HtmlInputText authorInput = WFUtil.getInputText(AUTHOR_ID, ref + "author"); authorInput.setSize(70); User user = iwc.getCurrentUser(); if(user!=null){ String userName = user.getName(); getArticleItemBean().setAuthor(userName); } p.getChildren().add(authorInput); //Article body p.getChildren().add(WFUtil.group(localizer.getTextVB("body"), WFUtil.getText(":"))); HTMLArea bodyArea = WFUtil.getHtmlAreaTextArea(BODY_ID, ref + "body", "500px", "400px"); //HTMLArea bodyArea = WFUtil.getHtmlAreaTextArea(BODY_ID, ref + "body"); /*bodyArea.addPlugin(HTMLArea.PLUGIN_TABLE_OPERATIONS); bodyArea.addPlugin(HTMLArea.PLUGIN_DYNAMIC_CSS, "3"); bodyArea.addPlugin(HTMLArea.PLUGIN_CSS, "3"); bodyArea.addPlugin(HTMLArea.PLUGIN_CONTEXT_MENU); bodyArea.addPlugin(HTMLArea.PLUGIN_LIST_TYPE); bodyArea.addPlugin(HTMLArea.PLUGIN_CHARACTER_MAP); */ bodyArea.setAllowFontSelection(false); p.getChildren().add(WFUtil.group(bodyArea, WFUtil.getBreak())); p.getChildren().add(WFUtil.group(localizer.getTextVB("teaser"), WFUtil.getText(":"))); HtmlInputTextarea teaserArea = WFUtil.getTextArea(TEASER_ID, ref + "teaser", "500px", "60px"); p.getChildren().add(teaserArea); p.getChildren().add(WFUtil.group(localizer.getTextVB("source"), WFUtil.getText(":"))); HtmlInputText sourceArea = WFUtil.getInputText(AUTHOR_ID, ref + "source"); sourceArea.setSize(70); p.getChildren().add(sourceArea); p.getChildren().add(WFUtil.getBreak()); p.getChildren().add(WFUtil.getBreak()); // p = WFPanelUtil.getPlainFormPanel(1);/* p.getChildren().add(WFUtil.group(WFUtil.getHeaderTextVB(bref + "created"), WFUtil.getTextVB(ref + "creationDate") ));*/// p.getChildren().add(WFUtil.getText(" "));// UIComponent t = WFUtil.group(localizer.getHeaderTextVB("status"), WFUtil.getText(": "));// t.getChildren().add(WFUtil.getTextVB(ref + "status"));// p.getChildren().add(t); p.getChildren().add(WFUtil.group(localizer.getTextVB("status"), WFUtil.getText(":"))); p.getChildren().add(WFUtil.getTextVB(ref + "status")); p.getChildren().add(WFUtil.group(localizer.getTextVB("current_version"), WFUtil.getText(":"))); p.getChildren().add(WFUtil.getTextVB(ref + "versionName")); p.getChildren().add(WFUtil.getBreak()); p.getChildren().add(WFUtil.getBreak()); // p = WFPanelUtil.getFormPanel(2); p.getChildren().add(WFUtil.group(localizer.getTextVB("comment"), WFUtil.getText(":")));// p.getChildren().add(WFUtil.group(WFUtil.getTextVB(bref + "attachments"), WFUtil.getText(":"))); HtmlInputTextarea commentArea = WFUtil.getTextArea(COMMENT_ID, ref + "comment", "500px", "60px"); p.getChildren().add(commentArea);// WFContainer attachmentContainer = new WFContainer();// attachmentContainer.add(WFUtil.getButtonVB(ADD_ATTACHMENT_ID, bref + "add_attachment", this));// attachmentContainer.add(WFUtil.getBreak());// attachmentContainer.add(getAttachmentList());// p.getChildren().add(attachmentContainer); // mainContainer.add(p); // p = WFPanelUtil.getFormPanel(1);// p.getChildren().add(WFUtil.group(WFUtil.getTextVB(bref + "related_content_items"), WFUtil.getText(":"))); // WFContainer contentItemContainer = new WFContainer(); // contentItemContainer.add(WFUtil.getButtonVB(ADD_RELATED_CONTENT_ITEM_ID, bref + "add_content_item", this));// contentItemContainer.add(WFUtil.getBreak());// contentItemContainer.add(getRelatedContentItemsList());// p.getChildren().add(contentItemContainer);// p.getChildren().add(WFUtil.group(WFUtil.getTextVB(bref + "publishing_date"), WFUtil.getText(":"))); // WFDateInput publishedFromInput = WFUtil.getDateInput(PUBLISHED_FROM_DATE_ID, ref + "case.publishedFromDate");// publishedFromInput.setShowTime(true);// p.getChildren().add(publishedFromInput);// p.getChildren().add(WFUtil.group(WFUtil.getTextVB(bref + "expiration_date"), WFUtil.getText(":"))); // WFDateInput publishedToInput = WFUtil.getDateInput(PUBLISHED_TO_DATE_ID, ref + "case.publishedToDate");// publishedToInput.setShowTime(true);// p.getChildren().add(publishedToInput); // mainContainer.add(p); p.getChildren().add(WFUtil.getBreak()); p.getChildren().add(WFUtil.getBreak());// mainContainer.add(WFUtil.getBreak());// p = WFPanelUtil.getPlainFormPanel(1);// HtmlCommandButton editCategoriesButton = WFUtil.getButtonVB(EDIT_CATEGORIES_ID, bref + "edit_categories", this);// p.getChildren().add(editCategoriesButton); //Temporary taking away folderr location/* p.getChildren().add(WFUtil.group(localizer.getTextVB("folder"), WFUtil.getText(":"))); HtmlInputText folderInput = WFUtil.getInputText(FOLDER_ID, ref + "folderLocation"); if(null==folderInput.getValue() || "".equals(folderInput.getValue())) { String FolderString = ArticleUtil.getArticleYearMonthPath();// System.out.println("Folder "+FolderString); folderInput.setValue(FolderString); } else { File file = new File(folderInput.getValue().toString()); folderInput.setValue(file.getParentFile().getParent()); } folderInput.setSize(70); p.getChildren().add(folderInput); */ p.getChildren().add(WFUtil.getBreak()); //Categories// WebDAVCategories categoriesUI = new WebDAVCategories(); ArticleItemBean articleItemBean = (ArticleItemBean) WFUtil.getBeanInstance(ARTICLE_ITEM_BEAN_ID); String resourcePath = articleItemBean.getArticleResourcePath(); categoriesUI.setResourcePath(resourcePath); p.getChildren().add(categoriesUI); p.getChildren().add(WFUtil.getBreak()); p.getChildren().add(WFUtil.getBreak()); p.getChildren().add(WFUtil.getBreak());// WFComponentSelector cs = new WFComponentSelector();// cs.setId(BUTTON_SELECTOR_ID);// cs.setDividerText(" "); HtmlCommandButton saveButton = localizer.getButtonVB(SAVE_ID, "save", this);// HtmlCommandButton saveButton = WFUtil.getButtonVB(SAVE_ID, WFPage.CONTENT_BUNDLE + "save", this);// cs.add(saveButton);// cs.add(WFUtil.getButtonVB(FOR_REVIEW_ID, bref + "for_review", this));// cs.add(WFUtil.getButtonVB(PUBLISH_ID, bref + "publish", this));// cs.add(WFUtil.getButtonVB(REWRITE_ID, bref + "rewrite", this));// cs.add(WFUtil.getButtonVB(REJECT_ID, bref + "reject", this));// cs.add(WFUtil.getButtonVB(DELETE_ID, bref + "delete", this));// cs.add(WFUtil.getButtonVB(CANCEL_ID, bref + "cancel", this));// cs.setSelectedId(CANCEL_ID, true);// p.getChildren().add(cs); p.getChildren().add(saveButton); mainContainer.add(p); WFComponentSelector editorSelector = new WFComponentSelector(); editorSelector.setId(EDITOR_SELECTOR_ID); editorSelector.add(mainContainer); editorSelector.add(getCategoryEditContainer());// FileUploadForm f = new FileUploadForm(this, FILE_UPLOAD_ID, FILE_UPLOAD_CANCEL_ID); editorSelector.add(getRelatedContentItemsContainer()); editorSelector.setSelectedId(ARTICLE_EDITOR_ID, true); return editorSelector; }

57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/82093f7731a5d1d2d6298791315369b8e96be576/EditArticleView.java/buggy/src/java/com/idega/block/article/component/EditArticleView.java

emptyMessagePanel.setBounds(0, r.height-h, w, h);

emptyMessagePanel.setBounds(0, r.height-h, 3*w/2, h);

private void buildEmptyPanel() { if (emptyMessagePanel != null) return; emptyMessagePanel = new JPanel(); emptyMessagePanel.setOpaque(true); emptyMessagePanel.setBorder( BorderFactory.createLineBorder(Color.BLACK)); Rectangle r = titlePanel.getBounds(); emptyMessagePanel.setLayout(new BoxLayout(emptyMessagePanel, BoxLayout.X_AXIS)); IconManager im = IconManager.getInstance(); JLabel label = new JLabel(im.getIcon(IconManager.ERROR)); emptyMessagePanel.add(label); int w = label.getWidth(); label = new JLabel(EMPTY_MSG); int h = label.getFontMetrics(label.getFont()).getHeight(); w += getFontMetrics(getFont()).stringWidth(EMPTY_MSG); emptyMessagePanel.add(label); Insets i = emptyMessagePanel.getInsets(); h += i.top+i.bottom+2; emptyMessagePanel.setBounds(0, r.height-h, w, h); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/c3e0df27168af6ddebdb1c3476bb00aa3cf2fc92/EditorUI.java/clean/SRC/org/openmicroscopy/shoola/agents/treeviewer/editors/EditorUI.java

testPlane[i] = 127;

testPlane[i] = 126;

private byte[] getTestPlane() { if (testPlane == null) { Integer planeSize = pixbuf.getPlaneSize(); testPlane = new byte[planeSize.intValue()]; for (int i = 0; i < planeSize; i++) { if (i % 2 == 0) testPlane[i] = -128; else testPlane[i] = 127; } byte[] md = Helper.calculateMessageDigest(testPlane); originalDigest = Helper.bytesToHex(md); } return testPlane; }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ae0b01fad17fcacba3ec0999ca1ad645f389b5f9/PlaneWriteUnitTest.java/clean/components/omeio-nio/test/ome/io/nio/itests/PlaneWriteUnitTest.java

service = new PixelsService();

service = new PixelsService(PixelsService.ROOT_DEFAULT);

protected void setUp() throws IOException { // Create set up the base fixture which sets up the database for us baseFixture = new PixbufIOFixture(); pixels = baseFixture.setUp(); // "Our" fixture which creates the planes needed for this test case. service = new PixelsService(); pixbuf = service.createPixelBuffer(pixels); }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ae0b01fad17fcacba3ec0999ca1ad645f389b5f9/PlaneWriteUnitTest.java/clean/components/omeio-nio/test/ome/io/nio/itests/PlaneWriteUnitTest.java

searchContacts("");

SparkManager.getUserManager().searchContacts("", SparkManager.getWorkspace().getContactList());

public ContactList() { // Load Local Preferences localPreferences = SettingsManager.getLocalPreferences(); offlineGroup = new ContactGroup("Offline Group"); JToolBar toolbar = new JToolBar(); toolbar.setFloatable(false); addContactMenu = new JMenuItem(Res.getString("menuitem.add.contact"), SparkRes.getImageIcon(SparkRes.USER1_ADD_16x16)); addContactGroupMenu = new JMenuItem(Res.getString("menuitem.add.contact.group"), SparkRes.getImageIcon(SparkRes.SMALL_ADD_IMAGE)); removeContactFromGroupMenu = new JMenuItem(Res.getString("menuitem.remove.from.group"), SparkRes.getImageIcon(SparkRes.SMALL_DELETE)); chatMenu = new JMenuItem(Res.getString("menuitem.start.a.chat"), SparkRes.getImageIcon(SparkRes.SMALL_MESSAGE_IMAGE)); renameMenu = new JMenuItem(Res.getString("menuitem.rename"), SparkRes.getImageIcon(SparkRes.DESKTOP_IMAGE)); addContactMenu.addActionListener(this); removeContactFromGroupMenu.addActionListener(this); chatMenu.addActionListener(this); renameMenu.addActionListener(this); setLayout(new BorderLayout()); addingGroupButton = new RolloverButton(SparkRes.getImageIcon(SparkRes.ADD_CONTACT_IMAGE)); RolloverButton groupChatButton = new RolloverButton(SparkRes.getImageIcon(SparkRes.JOIN_GROUPCHAT_IMAGE)); toolbar.add(addingGroupButton); toolbar.add(groupChatButton); addingGroupButton.addActionListener(this); mainPanel.setLayout(new VerticalFlowLayout(VerticalFlowLayout.TOP, 0, 0, true, false)); mainPanel.setBackground((Color)UIManager.get("List.background")); treeScroller = new JScrollPane(mainPanel); treeScroller.setBorder(BorderFactory.createEmptyBorder()); treeScroller.getVerticalScrollBar().setBlockIncrement(50); treeScroller.getVerticalScrollBar().setUnitIncrement(20); retryPanel = new RetryPanel(); workspace = SparkManager.getWorkspace(); workspace.getCardPanel().add(RETRY_PANEL, retryPanel); add(treeScroller, BorderLayout.CENTER); // Load Properties file props = new Properties(); // Save to properties file. propertiesFile = new File(new File(Spark.getUserHome(), "Spark"), "groups.properties"); try { props.load(new FileInputStream(propertiesFile)); } catch (IOException e) { // File does not exist. } // Add ActionListener(s) to menus addContactGroup(unfiledGroup); addContactGroup(offlineGroup); showHideMenu.setSelected(false); // Add KeyMappings getInputMap(JComponent.WHEN_IN_FOCUSED_WINDOW).put(KeyStroke.getKeyStroke("control N"), "searchContacts"); getActionMap().put("searchContacts", new AbstractAction("searchContacts") { public void actionPerformed(ActionEvent evt) { searchContacts(""); } }); // Save state on shutdown. SparkManager.getMainWindow().addMainWindowListener(new MainWindowListener() { public void shutdown() { saveState(); } public void mainWindowActivated() { } public void mainWindowDeactivated() { } }); SparkManager.getConnection().addConnectionListener(this); // Get command panel and add View Online/Offline, Add Contact StatusBar statusBar = SparkManager.getWorkspace().getStatusBar(); JPanel commandPanel = statusBar.getCommandPanel(); final RolloverButton addContactButton = new RolloverButton(SparkRes.getImageIcon(SparkRes.USER1_ADD_16x16)); commandPanel.add(addContactButton); addContactButton.setToolTipText(Res.getString("message.add.a.contact")); addContactButton.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) { new RosterDialog().showRosterDialog(); } }); }