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return -1; | return 14; | private final int jjStopStringLiteralDfa_0(int pos, long active0){ switch (pos) { case 0: if ((active0 & 0x40000L) != 0L) { jjmatchedKind = 32; return -1; } if ((active0 & 0x40020000L) != 0L) return 10; if ((active0 & 0x80000000L) != 0L) { jjmatchedKind = 32; return 0; } return -1; case 1: if ((active0 & 0x40000L) != 0L) { if (jjmatchedPos == 0) { jjmatchedKind = 32; jjmatchedPos = 0; } return -1; } if ((active0 & 0x80000000L) != 0L) { if (jjmatchedPos == 0) { jjmatchedKind = 32; jjmatchedPos = 0; } return 48; } return -1; case 2: if ((active0 & 0x80000000L) != 0L) { if (jjmatchedPos == 0) { jjmatchedKind = 32; jjmatchedPos = 0; } return 49; } if ((active0 & 0x40000L) != 0L) { if (jjmatchedPos == 0) { jjmatchedKind = 32; jjmatchedPos = 0; } return -1; } return -1; case 3: if ((active0 & 0x40000L) != 0L) { if (jjmatchedPos == 0) { jjmatchedKind = 32; jjmatchedPos = 0; } return -1; } if ((active0 & 0x80000000L) != 0L) return 49; return -1; default : return -1; }} | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/2e6a5e583cccdc19c543caf9a1fb259181c98cb6/WikiParserTokenManager.java/buggy/wiki/src/org/tcdi/opensource/wiki/parser/WikiParserTokenManager.java |
if ((active0 & 0x80000000L) != 0L) return 49; | if ((active0 & 0x200000000L) != 0L) return 54; | private final int jjStopStringLiteralDfa_0(int pos, long active0){ switch (pos) { case 0: if ((active0 & 0x40000L) != 0L) { jjmatchedKind = 32; return -1; } if ((active0 & 0x40020000L) != 0L) return 10; if ((active0 & 0x80000000L) != 0L) { jjmatchedKind = 32; return 0; } return -1; case 1: if ((active0 & 0x40000L) != 0L) { if (jjmatchedPos == 0) { jjmatchedKind = 32; jjmatchedPos = 0; } return -1; } if ((active0 & 0x80000000L) != 0L) { if (jjmatchedPos == 0) { jjmatchedKind = 32; jjmatchedPos = 0; } return 48; } return -1; case 2: if ((active0 & 0x80000000L) != 0L) { if (jjmatchedPos == 0) { jjmatchedKind = 32; jjmatchedPos = 0; } return 49; } if ((active0 & 0x40000L) != 0L) { if (jjmatchedPos == 0) { jjmatchedKind = 32; jjmatchedPos = 0; } return -1; } return -1; case 3: if ((active0 & 0x40000L) != 0L) { if (jjmatchedPos == 0) { jjmatchedKind = 32; jjmatchedPos = 0; } return -1; } if ((active0 & 0x80000000L) != 0L) return 49; return -1; default : return -1; }} | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/2e6a5e583cccdc19c543caf9a1fb259181c98cb6/WikiParserTokenManager.java/buggy/wiki/src/org/tcdi/opensource/wiki/parser/WikiParserTokenManager.java |
tree.putClientProperty("JTree.lineStyle", "Angled"); | private TreeViewImageSet createTree(ImageDisplay node) { tree = new JTree(); tree.setShowsRootHandles(true); tree.setCellRenderer(new TreeCellRenderer(true, false)); tree.putClientProperty("JTree.lineStyle", "Angled"); tree.getSelectionModel().setSelectionMode( TreeSelectionModel.SINGLE_TREE_SELECTION); TreeViewImageSet root = new TreeViewImageSet(node); tree.setRootVisible(false); tree.setModel(new DefaultTreeModel(root)); tree.addMouseListener(new MouseAdapter() { public void mousePressed(MouseEvent e) { onClick(e, false); } public void mouseReleased(MouseEvent e) { onClick(e, true); } public void mouseEntered(MouseEvent e) { model.removeRollOver(); } }); tree.addTreeSelectionListener(new TreeSelectionListener() { public void valueChanged(TreeSelectionEvent e) { DefaultMutableTreeNode n = (DefaultMutableTreeNode) tree.getLastSelectedPathComponent(); if (n == null) return; model.setSelectedDisplay((ImageDisplay) n.getUserObject()); tree.getCellRenderer().getTreeCellRendererComponent(tree, n, tree.isPathSelected(new TreePath(n.getPath())), false, true, 0, false); } }); return root; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/3b273af3a5320ab0a054540f14a3c299ff01de69/TreeViewUI.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/treeview/TreeViewUI.java |
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ExperimenterData e = (ExperimenterData) it.next(); g.linkExperimenter((Experimenter) mapper.map(e)); | ExperimenterData ed = (ExperimenterData) it.next(); Experimenter e = (Experimenter) mapper.map( ed ); if ( ! linked( e.findGroupExperimenterMap( g ))) g.linkExperimenter( e ); | public IObject fillIObject( IObject obj, ReverseModelMapper mapper) { if ( obj instanceof ExperimenterGroup) { ExperimenterGroup g = (ExperimenterGroup) obj; if (super.fill(g)) { g.setName(this.getName()); // TODO what to do with DESCRIPTION and other missing fields if (this.getExperimenters() != null){ for (Iterator it = this.getExperimenters().iterator(); it.hasNext();) { ExperimenterData e = (ExperimenterData) it.next(); g.linkExperimenter((Experimenter) mapper.map(e)); } } } return g; } else { throw new IllegalArgumentException( "GroupData can only fill ExperimenterGroup."); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b7d44d4a82558acd2336a661072dda1f38cfc0b3/GroupData.java/clean/components/shoola-adapter/src/pojos/GroupData.java |
PixelsService service = PixelsService.getInstance(); | PixelsService service = new PixelsService(PixelsService.ROOT_DEFAULT); | protected void setUp() { pixels = new Pixels(); pixels.setId(1L); pixels.setSizeX(256); pixels.setSizeY(256); pixels.setSizeZ(64); pixels.setSizeC(3); pixels.setSizeT(50); PixelsType type = new PixelsType(); pixels.setPixelsType(type); // FIXME PixelsService service = PixelsService.getInstance(); pixelBuffer = service.getPixelBuffer(pixels); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ae0b01fad17fcacba3ec0999ca1ad645f389b5f9/OutOfBoundsUnitTest.java/buggy/components/omeio-nio/test/ome/io/nio/utests/OutOfBoundsUnitTest.java |
return; | throw new NameError(ruby, "undefined method '" + name + "' for " + (isModule() ? "module" : "class") + " '" + toName() + "'"); | public void aliasMethod(String name, String oldName) { testFrozen(); if (oldName.equals(name)) { return; } if (this == getRuby().getClasses().getObjectClass()) { getRuby().secure(4); } MethodNode methodNode = searchMethod(oldName); RubyModule origin = null; if (methodNode == null || methodNode.getBodyNode() == null) { if (isModule()) { methodNode = getRuby().getClasses().getObjectClass().searchMethod(oldName); origin = methodNode.getMethodOrigin(); } } if (methodNode == null || methodNode.getBodyNode() == null) { // print_undef( klass, def ); return; //CEF } origin = methodNode.getMethodOrigin(); Node body = methodNode.getBodyNode(); // methodNode.setCnt(methodNode.nd_cnt() + 1); if (body instanceof FBodyNode) { /* was alias */ oldName = body.getMId(); origin = (RubyModule) body.getOrigin(); body = body.getBodyNode(); } NodeFactory nf = new NodeFactory(getRuby()); getRuby().getMethodCache().clearByName(name); getMethods().put(name, nf.newMethod(nf.newFBody(body, oldName, origin), methodNode.getNoex())); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/RubyModule.java/clean/org/jruby/RubyModule.java |
public RubyObject const_get(RubySymbol symbol) { | public RubyObject const_get(RubyObject symbol) { | public RubyObject const_get(RubySymbol symbol) { String name = symbol.toId(); if (!IdUtil.isConstant(name)) { throw new NameError(getRuby(), "wrong constant name " + name); } return getConstant(name); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/RubyModule.java/clean/org/jruby/RubyModule.java |
public RubyObject const_set(RubySymbol symbol, RubyObject value) { | public RubyObject const_set(RubyObject symbol, RubyObject value) { | public RubyObject const_set(RubySymbol symbol, RubyObject value) { String name = symbol.toId(); if (!IdUtil.isConstant(name)) { throw new NameError(getRuby(), "wrong constant name " + name); } setConstant(name, value); return value; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/RubyModule.java/clean/org/jruby/RubyModule.java |
RubyModule origin = body.getMethodOrigin(); | public void exportMethod(String name, int noex) { if (this == getRuby().getClasses().getObjectClass()) { getRuby().secure(4); } MethodNode body = searchMethod(name); RubyModule origin = body.getMethodOrigin(); if (body == null && isModule()) { body = getRuby().getClasses().getObjectClass().searchMethod(name); origin = body.getMethodOrigin(); } if (body == null) { } if (body.getNoex() != noex) { if (this == origin) { body.setNoex(noex); } else { getRuby().getMethodCache().clearByName(name); addMethod(name, new NodeFactory(getRuby()).newZSuper(), noex); } } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/RubyModule.java/clean/org/jruby/RubyModule.java |
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origin = body.getMethodOrigin(); | public void exportMethod(String name, int noex) { if (this == getRuby().getClasses().getObjectClass()) { getRuby().secure(4); } MethodNode body = searchMethod(name); RubyModule origin = body.getMethodOrigin(); if (body == null && isModule()) { body = getRuby().getClasses().getObjectClass().searchMethod(name); origin = body.getMethodOrigin(); } if (body == null) { } if (body.getNoex() != noex) { if (this == origin) { body.setNoex(noex); } else { getRuby().getMethodCache().clearByName(name); addMethod(name, new NodeFactory(getRuby()).newZSuper(), noex); } } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/RubyModule.java/clean/org/jruby/RubyModule.java |
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if (this == origin) { | if (this == body.getMethodOrigin()) { | public void exportMethod(String name, int noex) { if (this == getRuby().getClasses().getObjectClass()) { getRuby().secure(4); } MethodNode body = searchMethod(name); RubyModule origin = body.getMethodOrigin(); if (body == null && isModule()) { body = getRuby().getClasses().getObjectClass().searchMethod(name); origin = body.getMethodOrigin(); } if (body == null) { } if (body.getNoex() != noex) { if (this == origin) { body.setNoex(noex); } else { getRuby().getMethodCache().clearByName(name); addMethod(name, new NodeFactory(getRuby()).newZSuper(), noex); } } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/RubyModule.java/clean/org/jruby/RubyModule.java |
funcall("singleton_added", RubySymbol.newSymbol(getRuby(), name)); | funcall("singleton_method_added", RubySymbol.newSymbol(getRuby(), name)); | public RubyModule module_function(RubyObject[] args) { if (getRuby().getSafeLevel() >= 4 && !isTaint()) { throw new RubySecurityException(getRuby(), "Insecure: can't change method visibility"); } if (args.length == 0) { getRuby().setActMethodScope(Constants.SCOPE_MODFUNC); } else { setMethodVisibility(args, Constants.NOEX_PRIVATE); for (int i = 0; i < args.length; i++) { String name = args[i].toId(); MethodNode body = searchMethod(name); if (body == null || body.getBodyNode() == null) { throw new RubyBugException("undefined method '" + name + "'; can't happen"); } getRuby().getMethodCache().clearByName(name); getSingletonClass().addMethod(name, body.getBodyNode(), Constants.NOEX_PUBLIC); funcall("singleton_added", RubySymbol.newSymbol(getRuby(), name)); } } return this; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/RubyModule.java/clean/org/jruby/RubyModule.java |
clone.setMethods(new RubyHashMap()); | public RubyObject rbClone() { RubyModule clone = new RubyModule(getRuby(), getRubyClass(), getSuperClass()); clone.setupClone(this); if (getInstanceVariables() != null) { clone.setInstanceVariables(getInstanceVariables().cloneRubyMap()); } // clone the methods. if (getMethods() != null) { clone.setMethods(new RubyHashMap()); getMethods().foreach(new RubyMapMethod() { NodeFactory nf = new NodeFactory(getRuby()); public int execute(Object key, Object value, Object arg) { MethodNode methodNode = (MethodNode) value; ((RubyMap) arg).put(key, nf.newMethod(methodNode.getBodyNode(), methodNode.getNoex())); return RubyMapMethod.CONTINUE; } }, clone.getMethods()); } return clone; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/RubyModule.java/clean/org/jruby/RubyModule.java |
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return; | public void setClassVar(String name, RubyObject value) { RubyModule tmp = this; while (tmp != null) { if (tmp.getInstanceVariables() != null && tmp.getInstanceVariables().get(name) != null) { if (tmp.isTaint() && getRuby().getSafeLevel() >= 4) { throw new RubySecurityException(getRuby(), "Insecure: can't modify class variable"); } tmp.getInstanceVariables().put(name, value); } tmp = tmp.getSuperClass(); } throw new NameError(getRuby(), "uninitialized class variable " + name + " in " + toName()); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/RubyModule.java/clean/org/jruby/RubyModule.java |
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public static IRubyObject s_digest(IRubyObject recv, RubyString str) { | public static IRubyObject s_digest(IRubyObject recv, IRubyObject str) { | public static IRubyObject s_digest(IRubyObject recv, RubyString str) { String name = ((RubyClass)recv).getClassVar("metadata").toString(); try { MessageDigest md = MessageDigest.getInstance(name); return recv.getRuntime().newString(new String(md.digest(str.toString().getBytes("PLAIN")),"ISO8859_1")); } catch(NoSuchAlgorithmException e) { throw recv.getRuntime().newNotImplementedError("Unsupported digest algorithm (" + name + ")"); } catch(java.io.UnsupportedEncodingException e) { throw recv.getRuntime().newNotImplementedError("Unsupported digest algorithm (" + name + ")"); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/af3894ea0dfb3e47ce20ec84c999cbcb97567438/RubyDigest.java/clean/src/org/jruby/RubyDigest.java |
public static IRubyObject s_hexdigest(IRubyObject recv, RubyString str) { | public static IRubyObject s_hexdigest(IRubyObject recv, IRubyObject str) { | public static IRubyObject s_hexdigest(IRubyObject recv, RubyString str) { String name = ((RubyClass)recv).getClassVar("metadata").toString(); try { MessageDigest md = MessageDigest.getInstance(name); return recv.getRuntime().newString(toHex(md.digest(str.toString().getBytes("PLAIN")))); } catch(NoSuchAlgorithmException e) { throw recv.getRuntime().newNotImplementedError("Unsupported digest algorithm (" + name + ")"); } catch(java.io.UnsupportedEncodingException e) { throw recv.getRuntime().newNotImplementedError("Unsupported digest algorithm (" + name + ")"); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/af3894ea0dfb3e47ce20ec84c999cbcb97567438/RubyDigest.java/clean/src/org/jruby/RubyDigest.java |
cDigestBase.defineSingletonMethod("digest",basecb.getSingletonMethod("s_digest",RubyString.class)); cDigestBase.defineSingletonMethod("hexdigest",basecb.getSingletonMethod("s_hexdigest",RubyString.class)); | cDigestBase.defineSingletonMethod("digest",basecb.getSingletonMethod("s_digest",IRubyObject.class)); cDigestBase.defineSingletonMethod("hexdigest",basecb.getSingletonMethod("s_hexdigest",IRubyObject.class)); | public static void createDigest(IRuby runtime) { RubyModule mDigest = runtime.defineModule("Digest"); RubyClass cDigestBase = mDigest.defineClassUnder("Base",runtime.getObject()); CallbackFactory basecb = runtime.callbackFactory(Base.class); cDigestBase.defineSingletonMethod("new",basecb.getOptSingletonMethod("newInstance")); cDigestBase.defineSingletonMethod("digest",basecb.getSingletonMethod("s_digest",RubyString.class)); cDigestBase.defineSingletonMethod("hexdigest",basecb.getSingletonMethod("s_hexdigest",RubyString.class)); cDigestBase.defineMethod("initialize",basecb.getOptMethod("initialize")); cDigestBase.defineMethod("initialize_copy",basecb.getMethod("initialize_copy",IRubyObject.class)); cDigestBase.defineMethod("clone",basecb.getMethod("rbClone")); cDigestBase.defineMethod("update",basecb.getMethod("update",IRubyObject.class)); cDigestBase.defineMethod("<<",basecb.getMethod("update",IRubyObject.class)); cDigestBase.defineMethod("digest",basecb.getMethod("digest")); cDigestBase.defineMethod("hexdigest",basecb.getMethod("hexdigest")); cDigestBase.defineMethod("to_s",basecb.getMethod("hexdigest")); cDigestBase.defineMethod("==",basecb.getMethod("eq",IRubyObject.class)); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/af3894ea0dfb3e47ce20ec84c999cbcb97567438/RubyDigest.java/clean/src/org/jruby/RubyDigest.java |
super(); | public LoadService(Ruby runtime) { super(); this.runtime = runtime; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/61503e7396c70acb6ed9f50922ff044d1fcc4bcc/LoadService.java/clean/src/org/jruby/internal/runtime/load/LoadService.java |
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public void init(Ruby runtime, List additionalDirectories) { | public void init(List additionalDirectories) { | public void init(Ruby runtime, List additionalDirectories) { for (Iterator iter = additionalDirectories.iterator(); iter.hasNext();) { addPath((String)iter.next()); } if (runtime.getSafeLevel() == 0) { String jrubyLib = System.getProperty("jruby.lib"); if (jrubyLib != null) { addPath(jrubyLib); } } String jrubyHome = System.getProperty("jruby.home"); if (jrubyHome != null) { String rubyDir = jrubyHome + File.separatorChar + "lib" + File.separatorChar + "ruby" + File.separatorChar; addPath(rubyDir + "site_ruby" + File.separatorChar + Constants.RUBY_MAJOR_VERSION); addPath(rubyDir + "site_ruby" + File.separatorChar + Constants.RUBY_MAJOR_VERSION + File.separatorChar + "java"); addPath(rubyDir + "site_ruby"); addPath(rubyDir + Constants.RUBY_MAJOR_VERSION); addPath(rubyDir + Constants.RUBY_MAJOR_VERSION + File.separatorChar + "java"); } if (runtime.getSafeLevel() == 0) { addPath("."); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/61503e7396c70acb6ed9f50922ff044d1fcc4bcc/LoadService.java/clean/src/org/jruby/internal/runtime/load/LoadService.java |
addPath((String)iter.next()); | addPath((String) iter.next()); | public void init(Ruby runtime, List additionalDirectories) { for (Iterator iter = additionalDirectories.iterator(); iter.hasNext();) { addPath((String)iter.next()); } if (runtime.getSafeLevel() == 0) { String jrubyLib = System.getProperty("jruby.lib"); if (jrubyLib != null) { addPath(jrubyLib); } } String jrubyHome = System.getProperty("jruby.home"); if (jrubyHome != null) { String rubyDir = jrubyHome + File.separatorChar + "lib" + File.separatorChar + "ruby" + File.separatorChar; addPath(rubyDir + "site_ruby" + File.separatorChar + Constants.RUBY_MAJOR_VERSION); addPath(rubyDir + "site_ruby" + File.separatorChar + Constants.RUBY_MAJOR_VERSION + File.separatorChar + "java"); addPath(rubyDir + "site_ruby"); addPath(rubyDir + Constants.RUBY_MAJOR_VERSION); addPath(rubyDir + Constants.RUBY_MAJOR_VERSION + File.separatorChar + "java"); } if (runtime.getSafeLevel() == 0) { addPath("."); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/61503e7396c70acb6ed9f50922ff044d1fcc4bcc/LoadService.java/clean/src/org/jruby/internal/runtime/load/LoadService.java |
public void init(Ruby runtime, List additionalDirectories) { for (Iterator iter = additionalDirectories.iterator(); iter.hasNext();) { addPath((String)iter.next()); } if (runtime.getSafeLevel() == 0) { String jrubyLib = System.getProperty("jruby.lib"); if (jrubyLib != null) { addPath(jrubyLib); } } String jrubyHome = System.getProperty("jruby.home"); if (jrubyHome != null) { String rubyDir = jrubyHome + File.separatorChar + "lib" + File.separatorChar + "ruby" + File.separatorChar; addPath(rubyDir + "site_ruby" + File.separatorChar + Constants.RUBY_MAJOR_VERSION); addPath(rubyDir + "site_ruby" + File.separatorChar + Constants.RUBY_MAJOR_VERSION + File.separatorChar + "java"); addPath(rubyDir + "site_ruby"); addPath(rubyDir + Constants.RUBY_MAJOR_VERSION); addPath(rubyDir + Constants.RUBY_MAJOR_VERSION + File.separatorChar + "java"); } if (runtime.getSafeLevel() == 0) { addPath("."); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/61503e7396c70acb6ed9f50922ff044d1fcc4bcc/LoadService.java/clean/src/org/jruby/internal/runtime/load/LoadService.java |
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String rubyDir = jrubyHome + File.separatorChar + "lib" + File.separatorChar + "ruby" + File.separatorChar; | char sep = File.separatorChar; String rubyDir = jrubyHome + sep + "lib" + sep + "ruby" + sep; | public void init(Ruby runtime, List additionalDirectories) { for (Iterator iter = additionalDirectories.iterator(); iter.hasNext();) { addPath((String)iter.next()); } if (runtime.getSafeLevel() == 0) { String jrubyLib = System.getProperty("jruby.lib"); if (jrubyLib != null) { addPath(jrubyLib); } } String jrubyHome = System.getProperty("jruby.home"); if (jrubyHome != null) { String rubyDir = jrubyHome + File.separatorChar + "lib" + File.separatorChar + "ruby" + File.separatorChar; addPath(rubyDir + "site_ruby" + File.separatorChar + Constants.RUBY_MAJOR_VERSION); addPath(rubyDir + "site_ruby" + File.separatorChar + Constants.RUBY_MAJOR_VERSION + File.separatorChar + "java"); addPath(rubyDir + "site_ruby"); addPath(rubyDir + Constants.RUBY_MAJOR_VERSION); addPath(rubyDir + Constants.RUBY_MAJOR_VERSION + File.separatorChar + "java"); } if (runtime.getSafeLevel() == 0) { addPath("."); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/61503e7396c70acb6ed9f50922ff044d1fcc4bcc/LoadService.java/clean/src/org/jruby/internal/runtime/load/LoadService.java |
addPath(rubyDir + "site_ruby" + File.separatorChar + Constants.RUBY_MAJOR_VERSION); addPath(rubyDir + "site_ruby" + File.separatorChar + Constants.RUBY_MAJOR_VERSION + File.separatorChar + "java"); | addPath(rubyDir + "site_ruby" + sep + Constants.RUBY_MAJOR_VERSION); addPath(rubyDir + "site_ruby" + sep + Constants.RUBY_MAJOR_VERSION + sep + "java"); | public void init(Ruby runtime, List additionalDirectories) { for (Iterator iter = additionalDirectories.iterator(); iter.hasNext();) { addPath((String)iter.next()); } if (runtime.getSafeLevel() == 0) { String jrubyLib = System.getProperty("jruby.lib"); if (jrubyLib != null) { addPath(jrubyLib); } } String jrubyHome = System.getProperty("jruby.home"); if (jrubyHome != null) { String rubyDir = jrubyHome + File.separatorChar + "lib" + File.separatorChar + "ruby" + File.separatorChar; addPath(rubyDir + "site_ruby" + File.separatorChar + Constants.RUBY_MAJOR_VERSION); addPath(rubyDir + "site_ruby" + File.separatorChar + Constants.RUBY_MAJOR_VERSION + File.separatorChar + "java"); addPath(rubyDir + "site_ruby"); addPath(rubyDir + Constants.RUBY_MAJOR_VERSION); addPath(rubyDir + Constants.RUBY_MAJOR_VERSION + File.separatorChar + "java"); } if (runtime.getSafeLevel() == 0) { addPath("."); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/61503e7396c70acb6ed9f50922ff044d1fcc4bcc/LoadService.java/clean/src/org/jruby/internal/runtime/load/LoadService.java |
addPath(rubyDir + Constants.RUBY_MAJOR_VERSION + File.separatorChar + "java"); | addPath(rubyDir + Constants.RUBY_MAJOR_VERSION + sep + "java"); | public void init(Ruby runtime, List additionalDirectories) { for (Iterator iter = additionalDirectories.iterator(); iter.hasNext();) { addPath((String)iter.next()); } if (runtime.getSafeLevel() == 0) { String jrubyLib = System.getProperty("jruby.lib"); if (jrubyLib != null) { addPath(jrubyLib); } } String jrubyHome = System.getProperty("jruby.home"); if (jrubyHome != null) { String rubyDir = jrubyHome + File.separatorChar + "lib" + File.separatorChar + "ruby" + File.separatorChar; addPath(rubyDir + "site_ruby" + File.separatorChar + Constants.RUBY_MAJOR_VERSION); addPath(rubyDir + "site_ruby" + File.separatorChar + Constants.RUBY_MAJOR_VERSION + File.separatorChar + "java"); addPath(rubyDir + "site_ruby"); addPath(rubyDir + Constants.RUBY_MAJOR_VERSION); addPath(rubyDir + Constants.RUBY_MAJOR_VERSION + File.separatorChar + "java"); } if (runtime.getSafeLevel() == 0) { addPath("."); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/61503e7396c70acb6ed9f50922ff044d1fcc4bcc/LoadService.java/clean/src/org/jruby/internal/runtime/load/LoadService.java |
List constantNames = new ArrayList(); | ArrayList constantNames = new ArrayList(); | public RubyArray constants() { List constantNames = new ArrayList(); Iterator iter = getRuby().getClasses().nameIterator(); while (iter.hasNext()) { String name = (String) iter.next(); if (IdUtil.isConstant(name)) { constantNames.add(RubyString.newString(getRuby(), name)); } } return RubyArray.newArray(getRuby(), constantNames); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a42a5780d9d19f5b3f27bdc079684319c5596e54/RubyModule.java/clean/org/jruby/RubyModule.java |
rubyClass.defineMethod("each", new JavaEachMethod("hasNext", "next")); | rubyClass.defineMethod("each", new JavaEachMethod(null, "hasNext", "next")); | private void addDefaultModules(RubyClass rubyClass) { if (rubyClass.isMethodDefined("hasNext") && rubyClass.isMethodDefined("next")) { rubyClass.includeModule(ruby.getClasses().getEnumerableModule()); rubyClass.defineMethod("each", new JavaEachMethod("hasNext", "next")); } else if (rubyClass.isMethodDefined("hasNext") && rubyClass.isMethodDefined("next")) { rubyClass.includeModule(ruby.getClasses().getEnumerableModule()); rubyClass.defineMethod("each", new JavaEachMethod("hasMoreElements", "nextElement")); } if (rubyClass.isMethodDefined("compareTo")) { rubyClass.includeModule(ruby.getClasses().getComparableModule()); if (!rubyClass.isMethodDefined("<=>")) { rubyClass.defineAlias("<=>", "compareTo"); } } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/1ceedf02ac15d7325cfcf505ca74f35c5bc4a258/JavaSupport.java/buggy/org/jruby/javasupport/JavaSupport.java |
rubyClass.defineMethod("each", new JavaEachMethod("hasMoreElements", "nextElement")); | rubyClass.defineMethod("each", new JavaEachMethod(null, "hasMoreElements", "nextElement")); } else if (rubyClass.isMethodDefined("iterator")) { rubyClass.includeModule(ruby.getClasses().getEnumerableModule()); rubyClass.defineMethod("each", new JavaEachMethod("iterator", "hasNext", "next")); | private void addDefaultModules(RubyClass rubyClass) { if (rubyClass.isMethodDefined("hasNext") && rubyClass.isMethodDefined("next")) { rubyClass.includeModule(ruby.getClasses().getEnumerableModule()); rubyClass.defineMethod("each", new JavaEachMethod("hasNext", "next")); } else if (rubyClass.isMethodDefined("hasNext") && rubyClass.isMethodDefined("next")) { rubyClass.includeModule(ruby.getClasses().getEnumerableModule()); rubyClass.defineMethod("each", new JavaEachMethod("hasMoreElements", "nextElement")); } if (rubyClass.isMethodDefined("compareTo")) { rubyClass.includeModule(ruby.getClasses().getComparableModule()); if (!rubyClass.isMethodDefined("<=>")) { rubyClass.defineAlias("<=>", "compareTo"); } } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/1ceedf02ac15d7325cfcf505ca74f35c5bc4a258/JavaSupport.java/buggy/org/jruby/javasupport/JavaSupport.java |
model.setNodeForProperty(Browser.SELECTED_DISPLAY_PROPERTY, d); | public void mouseExited(MouseEvent me) { if (model.isRollOver()) return; ImageDisplay d = model.getLastSelectedDisplay(); if (d != null) view.setTitle(model.currentPathString(d)); else view.setTitle(""); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/58be91fb535c971d0bef1fde12344382b140273b/BrowserControl.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/browser/BrowserControl.java |
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kernelModule.getRuby().defineGlobalFunction( "method_missing", CallbackFactory.getOptMethod(RubyObject.class, "method_missing", RubyObject.class)); | Ruby ruby = kernelModule.getRuby(); ruby.defineGlobalFunction("method_missing", CallbackFactory.getOptMethod(RubyObject.class, "method_missing", RubyObject.class)); ruby.defineGlobalFunction("eval", CallbackFactory.getOptMethod(RubyObject.class, "eval", RubyString.class)); | public static void createObjectClass(RubyModule kernelModule) { // TODO: convert to CallbackFactory invokes. Callback clone = new ReflectionCallbackMethod(RubyObject.class, "rbClone"); Callback dup = new ReflectionCallbackMethod(RubyObject.class, "dup"); Callback equal = new ReflectionCallbackMethod(RubyObject.class, "equal", RubyObject.class); Callback respond_to = new ReflectionCallbackMethod(RubyObject.class, "respond_to", RubySymbol.class); Callback extend = new ReflectionCallbackMethod(RubyObject.class, "extend", RubyObject[].class, true); Callback freeze = new ReflectionCallbackMethod(RubyObject.class, "freeze"); Callback frozen = new ReflectionCallbackMethod(RubyObject.class, "frozen"); Callback id = new ReflectionCallbackMethod(RubyObject.class, "id"); Callback inspect = new ReflectionCallbackMethod(RubyObject.class, "inspect"); Callback instance_eval = new ReflectionCallbackMethod(RubyObject.class, "instance_eval", RubyObject[].class, true); Callback instance_of = new ReflectionCallbackMethod(RubyObject.class, "instance_of", RubyModule.class); Callback kind_of = new ReflectionCallbackMethod(RubyObject.class, "kind_of", RubyModule.class); Callback method = new ReflectionCallbackMethod(RubyObject.class, "method", RubyObject.class); Callback methods = new ReflectionCallbackMethod(RubyObject.class, "methods"); Callback private_methods = new ReflectionCallbackMethod(RubyObject.class, "private_methods"); Callback protected_methods = new ReflectionCallbackMethod(RubyObject.class, "protected_methods"); Callback taint = new ReflectionCallbackMethod(RubyObject.class, "taint"); Callback tainted = new ReflectionCallbackMethod(RubyObject.class, "tainted"); Callback to_a = new ReflectionCallbackMethod(RubyObject.class, "to_a"); Callback to_s = new ReflectionCallbackMethod(RubyObject.class, "to_s"); Callback type = new ReflectionCallbackMethod(RubyObject.class, "type"); Callback untaint = new ReflectionCallbackMethod(RubyObject.class, "untaint"); kernelModule.defineMethod("=~", CallbackFactory.getFalseMethod()); kernelModule.defineMethod("==", equal); kernelModule.defineMethod("respond_to?", respond_to); kernelModule.defineMethod("class", type); kernelModule.defineMethod("clone", clone); kernelModule.defineMethod("dup", dup); kernelModule.defineMethod("eql?", equal); kernelModule.defineMethod("extend", extend); kernelModule.defineMethod("freeze", freeze); kernelModule.defineMethod("frozen?", frozen); kernelModule.defineMethod("hash", id); kernelModule.defineMethod("id", id); kernelModule.defineMethod("__id__", id); kernelModule.defineMethod("inspect", inspect); kernelModule.defineMethod("instance_eval", instance_eval); kernelModule.defineMethod("instance_of?", instance_of); kernelModule.defineMethod("is_a?", kind_of); kernelModule.defineMethod("kind_of?", kind_of); kernelModule.defineMethod("method", method); kernelModule.defineMethod("methods", methods); kernelModule.defineMethod("private_methods", private_methods); kernelModule.defineMethod("protected_methods", protected_methods); kernelModule.defineMethod("public_methods", methods); kernelModule.defineMethod("nil?", CallbackFactory.getFalseMethod()); kernelModule.defineMethod("send", CallbackFactory.getOptMethod(RubyObject.class, "send", RubyString.class)); kernelModule.defineMethod("__send__", CallbackFactory.getOptMethod(RubyObject.class, "send", RubyString.class)); kernelModule.defineMethod("taint", taint); kernelModule.defineMethod("tainted?", tainted); kernelModule.defineMethod("to_a", to_a); kernelModule.defineMethod("to_s", to_s); kernelModule.defineMethod("type", type); kernelModule.defineMethod("untaint", untaint); kernelModule.defineAlias("===", "=="); kernelModule.defineAlias("equal?", "=="); kernelModule.getRuby().defineGlobalFunction( "method_missing", CallbackFactory.getOptMethod(RubyObject.class, "method_missing", RubyObject.class)); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b3fad11fe9fed3c3b955874e822c0e093e06dfc8/RubyObject.java/clean/org/jruby/RubyObject.java |
public void show(Component arg0, int arg1, int arg2) { super.show(arg0, arg1, arg2); Point p = arg0.getLocationOnScreen(); final Point displayPoint = new Point(p.x+arg1,p.y+arg2); System.err.println("display="+displayPoint); annotateItem.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) { PiccoloAction action = PiccoloActionFactory.getAnnotateImageAction(t,displayPoint); action.execute(); } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/28e98417641b00a2e12a791f10f204dc4562dec1/PopupMenuFactory.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/ui/PopupMenuFactory.java |
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System.err.println("display="+displayPoint); | public void show(Component arg0, int arg1, int arg2) { super.show(arg0, arg1, arg2); Point p = arg0.getLocationOnScreen(); final Point displayPoint = new Point(p.x+arg1,p.y+arg2); System.err.println("display="+displayPoint); annotateItem.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) { PiccoloAction action = PiccoloActionFactory.getAnnotateImageAction(t,displayPoint); action.execute(); } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/28e98417641b00a2e12a791f10f204dc4562dec1/PopupMenuFactory.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/ui/PopupMenuFactory.java |
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public Set findCGCIHierarchies(Set arg0) { /* return null; */ throw new RuntimeException("implement me"); | public Set findCGCIHierarchies(final Set arg0) { if (null == arg0 || arg0.size() == 0) { return new HashSet(); } HibernateTemplate ht = new HibernateTemplate(sessions); return (Set) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { newCache(); Query q = session.getNamedQuery("findCGCI"); q.setParameterList("img_list", arg0, new IntegerType()); List result = q.list(); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0) { return new HashSet(); } Set hierarchies = new HashSet(); Iterator i = imagesAll.iterator(); while (i.hasNext()) { Image img = (Image) i.next(); ImageData id = go(img, false); Set classifications = img.getClassifications(); Set categories = new HashSet(); for (Iterator c = classifications.iterator(); c.hasNext();) { Classification cla = (Classification) c.next(); if (cla.getValid().booleanValue()) { categories.add(cla.getCategory()); } } if (categories == null || categories.size() < 1) { hierarchies.add(id); } else { Iterator c = categories.iterator(); while (c.hasNext()) { Category ca = (Category) c.next(); CategoryData cd = go(ca, false); if (null == cd.images) cd.images = new HashSet(); cd.images.add(id); Integer cg = ca.getCategoryGroup(); if (cg == null) { hierarchies.add(cd); } else { } } } } emptyCache(); return hierarchies; } }); | public Set findCGCIHierarchies(Set arg0) { // TODO Auto-generated method stub /* return null; */ throw new RuntimeException("implement me"); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
public Map findDatasetAnnotations(final Set arg0) { // CONTRACT if (null == arg0 || arg0.size()==0) { return new HashMap(); } HibernateTemplate ht = new HibernateTemplate(sessions); return (Map) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { Query q = session.getNamedQuery("findDatasetAnn"); q.setParameterList("ds_list", arg0, new IntegerType()); Map map = findDatasetAnnotations(q); emptyCache(); return map; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
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if (null == arg0 || arg0.size()==0) { return new HashMap(); } | if (null == arg0 || arg0.size() == 0) { return new HashMap(); } | public Map findDatasetAnnotations(final Set arg0) { // CONTRACT if (null == arg0 || arg0.size()==0) { return new HashMap(); } HibernateTemplate ht = new HibernateTemplate(sessions); return (Map) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { Query q = session.getNamedQuery("findDatasetAnn"); q.setParameterList("ds_list", arg0, new IntegerType()); Map map = findDatasetAnnotations(q); emptyCache(); return map; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
Query q = session.getNamedQuery("findDatasetAnn"); q.setParameterList("ds_list", arg0, new IntegerType()); | Query q = session.getNamedQuery("findImageAnnWithID"); q.setParameterList("img_list", arg0, new IntegerType()); q.setInteger("expId", arg1); | public Object doInHibernate(Session session) throws HibernateException { Query q = session.getNamedQuery("findDatasetAnn"); q.setParameterList("ds_list", arg0, new IntegerType()); Map map = findDatasetAnnotations(q); emptyCache(); return map; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
Map map = findDatasetAnnotations(q); | Map map = findImageAnnotations(q); | public Object doInHibernate(Session session) throws HibernateException { Query q = session.getNamedQuery("findDatasetAnn"); q.setParameterList("ds_list", arg0, new IntegerType()); Map map = findDatasetAnnotations(q); emptyCache(); return map; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
Query q = session.getNamedQuery("findDatasetAnnWithID"); | Query q = session.getNamedQuery("findDatasetAnn"); | public Object doInHibernate(Session session) throws HibernateException { Query q = session.getNamedQuery("findDatasetAnnWithID"); q.setParameterList("ds_list", arg0, new IntegerType()); q.setInteger("expId", arg1); Map map = findDatasetAnnotations(q); emptyCache(); return map; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
q.setInteger("expId", arg1); | public Object doInHibernate(Session session) throws HibernateException { Query q = session.getNamedQuery("findDatasetAnnWithID"); q.setParameterList("ds_list", arg0, new IntegerType()); q.setInteger("expId", arg1); Map map = findDatasetAnnotations(q); emptyCache(); return map; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
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public Map findImageAnnotations(final Set arg0) { // CONTRACT if (null == arg0 || arg0.size()==0) { return new HashMap(); } HibernateTemplate ht = new HibernateTemplate(sessions); return (Map) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { Query q = session.getNamedQuery("findImageAnn"); q.setParameterList("img_list", arg0, new IntegerType()); Map map = findImageAnnotations(q); emptyCache(); return map; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
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if (null == arg0 || arg0.size()==0) { return new HashMap(); } | if (null == arg0 || arg0.size() == 0) { return new HashMap(); } | public Map findImageAnnotations(final Set arg0) { // CONTRACT if (null == arg0 || arg0.size()==0) { return new HashMap(); } HibernateTemplate ht = new HibernateTemplate(sessions); return (Map) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { Query q = session.getNamedQuery("findImageAnn"); q.setParameterList("img_list", arg0, new IntegerType()); Map map = findImageAnnotations(q); emptyCache(); return map; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
Query q = session.getNamedQuery("findImageAnn"); | newCache(); Query q = session.getNamedQuery("findCGCI"); | public Object doInHibernate(Session session) throws HibernateException { Query q = session.getNamedQuery("findImageAnn"); q.setParameterList("img_list", arg0, new IntegerType()); Map map = findImageAnnotations(q); emptyCache(); return map; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
Map map = findImageAnnotations(q); | List result = q.list(); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0) { return new HashSet(); } Set hierarchies = new HashSet(); Iterator i = imagesAll.iterator(); while (i.hasNext()) { Image img = (Image) i.next(); ImageData id = go(img, false); Set classifications = img.getClassifications(); Set categories = new HashSet(); for (Iterator c = classifications.iterator(); c.hasNext();) { Classification cla = (Classification) c.next(); if (cla.getValid().booleanValue()) { categories.add(cla.getCategory()); } } if (categories == null || categories.size() < 1) { hierarchies.add(id); } else { Iterator c = categories.iterator(); while (c.hasNext()) { Category ca = (Category) c.next(); CategoryData cd = go(ca, false); if (null == cd.images) cd.images = new HashSet(); cd.images.add(id); Integer cg = ca.getCategoryGroup(); if (cg == null) { hierarchies.add(cd); } else { } } } } | public Object doInHibernate(Session session) throws HibernateException { Query q = session.getNamedQuery("findImageAnn"); q.setParameterList("img_list", arg0, new IntegerType()); Map map = findImageAnnotations(q); emptyCache(); return map; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
return map; | return hierarchies; | public Object doInHibernate(Session session) throws HibernateException { Query q = session.getNamedQuery("findImageAnn"); q.setParameterList("img_list", arg0, new IntegerType()); Map map = findImageAnnotations(q); emptyCache(); return map; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
Query q = session.getNamedQuery("findImageAnnWithID"); | Query q = session.getNamedQuery("findImageAnn"); | public Object doInHibernate(Session session) throws HibernateException { Query q = session.getNamedQuery("findImageAnnWithID"); q.setParameterList("img_list", arg0, new IntegerType()); q.setInteger("expId", arg1); Map map = findImageAnnotations(q); emptyCache(); return map; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
q.setInteger("expId", arg1); | public Object doInHibernate(Session session) throws HibernateException { Query q = session.getNamedQuery("findImageAnnWithID"); q.setParameterList("img_list", arg0, new IntegerType()); q.setInteger("expId", arg1); Map map = findImageAnnotations(q); emptyCache(); return map; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
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if (null == arg0 || arg0.size()==0) { return new HashSet(); } | if (null == arg0 || arg0.size() == 0) { return new HashSet(); } | public Set findPDIHierarchies(final Set arg0) { // CONTRACT if (null == arg0 || arg0.size()==0) { return new HashSet(); } HibernateTemplate ht = new HibernateTemplate(sessions); return (Set) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { newCache(); //QUERY Query q = session.getNamedQuery("findPDI"); q.setParameterList("img_list", arg0, new IntegerType()); List result = q.list(); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0) { return new HashSet(); } // LOGIC // This is all possible because of the use of the cache! Set hierarchies = new HashSet(); Iterator i = imagesAll.iterator(); while (i.hasNext()) { Image img = (Image) i.next(); ImageData id = go(img,false); // Start using *Data to prevent lazy loading Set datasets = img.getDatasets(); if (datasets == null || datasets.size() < 1){ hierarchies.add(id); } else { Iterator d = datasets.iterator(); while (d.hasNext()) { Dataset ds = (Dataset) d.next(); DatasetData dd = go(ds,false); // Add images (since not resolved because go(*,false); if (null == dd.images) dd.images = new HashSet(); dd.images.add(id); Set projects = ds.getProjects(); if (projects == null || projects.size() < 1) { hierarchies.add(dd); } else { Iterator p = projects.iterator(); while (p.hasNext()){ Project prj = (Project) p.next(); ProjectData pd = go(prj,false); // Add datsets (since not resolved because go(*,false) if (null == pd.datasets) pd.datasets = new HashSet(); pd.datasets.add(dd); hierarchies.add(pd); } } } } } emptyCache(); return hierarchies; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
ImageData id = go(img,false); | ImageData id = go(img, false); | public Set findPDIHierarchies(final Set arg0) { // CONTRACT if (null == arg0 || arg0.size()==0) { return new HashSet(); } HibernateTemplate ht = new HibernateTemplate(sessions); return (Set) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { newCache(); //QUERY Query q = session.getNamedQuery("findPDI"); q.setParameterList("img_list", arg0, new IntegerType()); List result = q.list(); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0) { return new HashSet(); } // LOGIC // This is all possible because of the use of the cache! Set hierarchies = new HashSet(); Iterator i = imagesAll.iterator(); while (i.hasNext()) { Image img = (Image) i.next(); ImageData id = go(img,false); // Start using *Data to prevent lazy loading Set datasets = img.getDatasets(); if (datasets == null || datasets.size() < 1){ hierarchies.add(id); } else { Iterator d = datasets.iterator(); while (d.hasNext()) { Dataset ds = (Dataset) d.next(); DatasetData dd = go(ds,false); // Add images (since not resolved because go(*,false); if (null == dd.images) dd.images = new HashSet(); dd.images.add(id); Set projects = ds.getProjects(); if (projects == null || projects.size() < 1) { hierarchies.add(dd); } else { Iterator p = projects.iterator(); while (p.hasNext()){ Project prj = (Project) p.next(); ProjectData pd = go(prj,false); // Add datsets (since not resolved because go(*,false) if (null == pd.datasets) pd.datasets = new HashSet(); pd.datasets.add(dd); hierarchies.add(pd); } } } } } emptyCache(); return hierarchies; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
if (datasets == null || datasets.size() < 1){ | if (datasets == null || datasets.size() < 1) { | public Set findPDIHierarchies(final Set arg0) { // CONTRACT if (null == arg0 || arg0.size()==0) { return new HashSet(); } HibernateTemplate ht = new HibernateTemplate(sessions); return (Set) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { newCache(); //QUERY Query q = session.getNamedQuery("findPDI"); q.setParameterList("img_list", arg0, new IntegerType()); List result = q.list(); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0) { return new HashSet(); } // LOGIC // This is all possible because of the use of the cache! Set hierarchies = new HashSet(); Iterator i = imagesAll.iterator(); while (i.hasNext()) { Image img = (Image) i.next(); ImageData id = go(img,false); // Start using *Data to prevent lazy loading Set datasets = img.getDatasets(); if (datasets == null || datasets.size() < 1){ hierarchies.add(id); } else { Iterator d = datasets.iterator(); while (d.hasNext()) { Dataset ds = (Dataset) d.next(); DatasetData dd = go(ds,false); // Add images (since not resolved because go(*,false); if (null == dd.images) dd.images = new HashSet(); dd.images.add(id); Set projects = ds.getProjects(); if (projects == null || projects.size() < 1) { hierarchies.add(dd); } else { Iterator p = projects.iterator(); while (p.hasNext()){ Project prj = (Project) p.next(); ProjectData pd = go(prj,false); // Add datsets (since not resolved because go(*,false) if (null == pd.datasets) pd.datasets = new HashSet(); pd.datasets.add(dd); hierarchies.add(pd); } } } } } emptyCache(); return hierarchies; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
} else { | } else { | public Set findPDIHierarchies(final Set arg0) { // CONTRACT if (null == arg0 || arg0.size()==0) { return new HashSet(); } HibernateTemplate ht = new HibernateTemplate(sessions); return (Set) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { newCache(); //QUERY Query q = session.getNamedQuery("findPDI"); q.setParameterList("img_list", arg0, new IntegerType()); List result = q.list(); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0) { return new HashSet(); } // LOGIC // This is all possible because of the use of the cache! Set hierarchies = new HashSet(); Iterator i = imagesAll.iterator(); while (i.hasNext()) { Image img = (Image) i.next(); ImageData id = go(img,false); // Start using *Data to prevent lazy loading Set datasets = img.getDatasets(); if (datasets == null || datasets.size() < 1){ hierarchies.add(id); } else { Iterator d = datasets.iterator(); while (d.hasNext()) { Dataset ds = (Dataset) d.next(); DatasetData dd = go(ds,false); // Add images (since not resolved because go(*,false); if (null == dd.images) dd.images = new HashSet(); dd.images.add(id); Set projects = ds.getProjects(); if (projects == null || projects.size() < 1) { hierarchies.add(dd); } else { Iterator p = projects.iterator(); while (p.hasNext()){ Project prj = (Project) p.next(); ProjectData pd = go(prj,false); // Add datsets (since not resolved because go(*,false) if (null == pd.datasets) pd.datasets = new HashSet(); pd.datasets.add(dd); hierarchies.add(pd); } } } } } emptyCache(); return hierarchies; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
DatasetData dd = go(ds,false); | DatasetData dd = go(ds, false); | public Set findPDIHierarchies(final Set arg0) { // CONTRACT if (null == arg0 || arg0.size()==0) { return new HashSet(); } HibernateTemplate ht = new HibernateTemplate(sessions); return (Set) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { newCache(); //QUERY Query q = session.getNamedQuery("findPDI"); q.setParameterList("img_list", arg0, new IntegerType()); List result = q.list(); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0) { return new HashSet(); } // LOGIC // This is all possible because of the use of the cache! Set hierarchies = new HashSet(); Iterator i = imagesAll.iterator(); while (i.hasNext()) { Image img = (Image) i.next(); ImageData id = go(img,false); // Start using *Data to prevent lazy loading Set datasets = img.getDatasets(); if (datasets == null || datasets.size() < 1){ hierarchies.add(id); } else { Iterator d = datasets.iterator(); while (d.hasNext()) { Dataset ds = (Dataset) d.next(); DatasetData dd = go(ds,false); // Add images (since not resolved because go(*,false); if (null == dd.images) dd.images = new HashSet(); dd.images.add(id); Set projects = ds.getProjects(); if (projects == null || projects.size() < 1) { hierarchies.add(dd); } else { Iterator p = projects.iterator(); while (p.hasNext()){ Project prj = (Project) p.next(); ProjectData pd = go(prj,false); // Add datsets (since not resolved because go(*,false) if (null == pd.datasets) pd.datasets = new HashSet(); pd.datasets.add(dd); hierarchies.add(pd); } } } } } emptyCache(); return hierarchies; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
if (null == dd.images) dd.images = new HashSet(); | if (null == dd.images) dd.images = new HashSet(); | public Set findPDIHierarchies(final Set arg0) { // CONTRACT if (null == arg0 || arg0.size()==0) { return new HashSet(); } HibernateTemplate ht = new HibernateTemplate(sessions); return (Set) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { newCache(); //QUERY Query q = session.getNamedQuery("findPDI"); q.setParameterList("img_list", arg0, new IntegerType()); List result = q.list(); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0) { return new HashSet(); } // LOGIC // This is all possible because of the use of the cache! Set hierarchies = new HashSet(); Iterator i = imagesAll.iterator(); while (i.hasNext()) { Image img = (Image) i.next(); ImageData id = go(img,false); // Start using *Data to prevent lazy loading Set datasets = img.getDatasets(); if (datasets == null || datasets.size() < 1){ hierarchies.add(id); } else { Iterator d = datasets.iterator(); while (d.hasNext()) { Dataset ds = (Dataset) d.next(); DatasetData dd = go(ds,false); // Add images (since not resolved because go(*,false); if (null == dd.images) dd.images = new HashSet(); dd.images.add(id); Set projects = ds.getProjects(); if (projects == null || projects.size() < 1) { hierarchies.add(dd); } else { Iterator p = projects.iterator(); while (p.hasNext()){ Project prj = (Project) p.next(); ProjectData pd = go(prj,false); // Add datsets (since not resolved because go(*,false) if (null == pd.datasets) pd.datasets = new HashSet(); pd.datasets.add(dd); hierarchies.add(pd); } } } } } emptyCache(); return hierarchies; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
public Set findPDIHierarchies(final Set arg0) { // CONTRACT if (null == arg0 || arg0.size()==0) { return new HashSet(); } HibernateTemplate ht = new HibernateTemplate(sessions); return (Set) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { newCache(); //QUERY Query q = session.getNamedQuery("findPDI"); q.setParameterList("img_list", arg0, new IntegerType()); List result = q.list(); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0) { return new HashSet(); } // LOGIC // This is all possible because of the use of the cache! Set hierarchies = new HashSet(); Iterator i = imagesAll.iterator(); while (i.hasNext()) { Image img = (Image) i.next(); ImageData id = go(img,false); // Start using *Data to prevent lazy loading Set datasets = img.getDatasets(); if (datasets == null || datasets.size() < 1){ hierarchies.add(id); } else { Iterator d = datasets.iterator(); while (d.hasNext()) { Dataset ds = (Dataset) d.next(); DatasetData dd = go(ds,false); // Add images (since not resolved because go(*,false); if (null == dd.images) dd.images = new HashSet(); dd.images.add(id); Set projects = ds.getProjects(); if (projects == null || projects.size() < 1) { hierarchies.add(dd); } else { Iterator p = projects.iterator(); while (p.hasNext()){ Project prj = (Project) p.next(); ProjectData pd = go(prj,false); // Add datsets (since not resolved because go(*,false) if (null == pd.datasets) pd.datasets = new HashSet(); pd.datasets.add(dd); hierarchies.add(pd); } } } } } emptyCache(); return hierarchies; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
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while (p.hasNext()){ | while (p.hasNext()) { | public Set findPDIHierarchies(final Set arg0) { // CONTRACT if (null == arg0 || arg0.size()==0) { return new HashSet(); } HibernateTemplate ht = new HibernateTemplate(sessions); return (Set) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { newCache(); //QUERY Query q = session.getNamedQuery("findPDI"); q.setParameterList("img_list", arg0, new IntegerType()); List result = q.list(); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0) { return new HashSet(); } // LOGIC // This is all possible because of the use of the cache! Set hierarchies = new HashSet(); Iterator i = imagesAll.iterator(); while (i.hasNext()) { Image img = (Image) i.next(); ImageData id = go(img,false); // Start using *Data to prevent lazy loading Set datasets = img.getDatasets(); if (datasets == null || datasets.size() < 1){ hierarchies.add(id); } else { Iterator d = datasets.iterator(); while (d.hasNext()) { Dataset ds = (Dataset) d.next(); DatasetData dd = go(ds,false); // Add images (since not resolved because go(*,false); if (null == dd.images) dd.images = new HashSet(); dd.images.add(id); Set projects = ds.getProjects(); if (projects == null || projects.size() < 1) { hierarchies.add(dd); } else { Iterator p = projects.iterator(); while (p.hasNext()){ Project prj = (Project) p.next(); ProjectData pd = go(prj,false); // Add datsets (since not resolved because go(*,false) if (null == pd.datasets) pd.datasets = new HashSet(); pd.datasets.add(dd); hierarchies.add(pd); } } } } } emptyCache(); return hierarchies; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
ProjectData pd = go(prj,false); if (null == pd.datasets) pd.datasets = new HashSet(); | ProjectData pd = go(prj, false); if (null == pd.datasets) pd.datasets = new HashSet(); | public Set findPDIHierarchies(final Set arg0) { // CONTRACT if (null == arg0 || arg0.size()==0) { return new HashSet(); } HibernateTemplate ht = new HibernateTemplate(sessions); return (Set) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { newCache(); //QUERY Query q = session.getNamedQuery("findPDI"); q.setParameterList("img_list", arg0, new IntegerType()); List result = q.list(); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0) { return new HashSet(); } // LOGIC // This is all possible because of the use of the cache! Set hierarchies = new HashSet(); Iterator i = imagesAll.iterator(); while (i.hasNext()) { Image img = (Image) i.next(); ImageData id = go(img,false); // Start using *Data to prevent lazy loading Set datasets = img.getDatasets(); if (datasets == null || datasets.size() < 1){ hierarchies.add(id); } else { Iterator d = datasets.iterator(); while (d.hasNext()) { Dataset ds = (Dataset) d.next(); DatasetData dd = go(ds,false); // Add images (since not resolved because go(*,false); if (null == dd.images) dd.images = new HashSet(); dd.images.add(id); Set projects = ds.getProjects(); if (projects == null || projects.size() < 1) { hierarchies.add(dd); } else { Iterator p = projects.iterator(); while (p.hasNext()){ Project prj = (Project) p.next(); ProjectData pd = go(prj,false); // Add datsets (since not resolved because go(*,false) if (null == pd.datasets) pd.datasets = new HashSet(); pd.datasets.add(dd); hierarchies.add(pd); } } } } } emptyCache(); return hierarchies; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
public Set findPDIHierarchies(final Set arg0) { // CONTRACT if (null == arg0 || arg0.size()==0) { return new HashSet(); } HibernateTemplate ht = new HibernateTemplate(sessions); return (Set) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { newCache(); //QUERY Query q = session.getNamedQuery("findPDI"); q.setParameterList("img_list", arg0, new IntegerType()); List result = q.list(); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0) { return new HashSet(); } // LOGIC // This is all possible because of the use of the cache! Set hierarchies = new HashSet(); Iterator i = imagesAll.iterator(); while (i.hasNext()) { Image img = (Image) i.next(); ImageData id = go(img,false); // Start using *Data to prevent lazy loading Set datasets = img.getDatasets(); if (datasets == null || datasets.size() < 1){ hierarchies.add(id); } else { Iterator d = datasets.iterator(); while (d.hasNext()) { Dataset ds = (Dataset) d.next(); DatasetData dd = go(ds,false); // Add images (since not resolved because go(*,false); if (null == dd.images) dd.images = new HashSet(); dd.images.add(id); Set projects = ds.getProjects(); if (projects == null || projects.size() < 1) { hierarchies.add(dd); } else { Iterator p = projects.iterator(); while (p.hasNext()){ Project prj = (Project) p.next(); ProjectData pd = go(prj,false); // Add datsets (since not resolved because go(*,false) if (null == pd.datasets) pd.datasets = new HashSet(); pd.datasets.add(dd); hierarchies.add(pd); } } } } } emptyCache(); return hierarchies; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
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ImageData id = go(img,false); | ImageData id = go(img, false); | public Object doInHibernate(Session session) throws HibernateException { newCache(); //QUERY Query q = session.getNamedQuery("findPDI"); q.setParameterList("img_list", arg0, new IntegerType()); List result = q.list(); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0) { return new HashSet(); } // LOGIC // This is all possible because of the use of the cache! Set hierarchies = new HashSet(); Iterator i = imagesAll.iterator(); while (i.hasNext()) { Image img = (Image) i.next(); ImageData id = go(img,false); // Start using *Data to prevent lazy loading Set datasets = img.getDatasets(); if (datasets == null || datasets.size() < 1){ hierarchies.add(id); } else { Iterator d = datasets.iterator(); while (d.hasNext()) { Dataset ds = (Dataset) d.next(); DatasetData dd = go(ds,false); // Add images (since not resolved because go(*,false); if (null == dd.images) dd.images = new HashSet(); dd.images.add(id); Set projects = ds.getProjects(); if (projects == null || projects.size() < 1) { hierarchies.add(dd); } else { Iterator p = projects.iterator(); while (p.hasNext()){ Project prj = (Project) p.next(); ProjectData pd = go(prj,false); // Add datsets (since not resolved because go(*,false) if (null == pd.datasets) pd.datasets = new HashSet(); pd.datasets.add(dd); hierarchies.add(pd); } } } } } emptyCache(); return hierarchies; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
if (datasets == null || datasets.size() < 1){ | if (datasets == null || datasets.size() < 1) { | public Object doInHibernate(Session session) throws HibernateException { newCache(); //QUERY Query q = session.getNamedQuery("findPDI"); q.setParameterList("img_list", arg0, new IntegerType()); List result = q.list(); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0) { return new HashSet(); } // LOGIC // This is all possible because of the use of the cache! Set hierarchies = new HashSet(); Iterator i = imagesAll.iterator(); while (i.hasNext()) { Image img = (Image) i.next(); ImageData id = go(img,false); // Start using *Data to prevent lazy loading Set datasets = img.getDatasets(); if (datasets == null || datasets.size() < 1){ hierarchies.add(id); } else { Iterator d = datasets.iterator(); while (d.hasNext()) { Dataset ds = (Dataset) d.next(); DatasetData dd = go(ds,false); // Add images (since not resolved because go(*,false); if (null == dd.images) dd.images = new HashSet(); dd.images.add(id); Set projects = ds.getProjects(); if (projects == null || projects.size() < 1) { hierarchies.add(dd); } else { Iterator p = projects.iterator(); while (p.hasNext()){ Project prj = (Project) p.next(); ProjectData pd = go(prj,false); // Add datsets (since not resolved because go(*,false) if (null == pd.datasets) pd.datasets = new HashSet(); pd.datasets.add(dd); hierarchies.add(pd); } } } } } emptyCache(); return hierarchies; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
} else { | } else { | public Object doInHibernate(Session session) throws HibernateException { newCache(); //QUERY Query q = session.getNamedQuery("findPDI"); q.setParameterList("img_list", arg0, new IntegerType()); List result = q.list(); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0) { return new HashSet(); } // LOGIC // This is all possible because of the use of the cache! Set hierarchies = new HashSet(); Iterator i = imagesAll.iterator(); while (i.hasNext()) { Image img = (Image) i.next(); ImageData id = go(img,false); // Start using *Data to prevent lazy loading Set datasets = img.getDatasets(); if (datasets == null || datasets.size() < 1){ hierarchies.add(id); } else { Iterator d = datasets.iterator(); while (d.hasNext()) { Dataset ds = (Dataset) d.next(); DatasetData dd = go(ds,false); // Add images (since not resolved because go(*,false); if (null == dd.images) dd.images = new HashSet(); dd.images.add(id); Set projects = ds.getProjects(); if (projects == null || projects.size() < 1) { hierarchies.add(dd); } else { Iterator p = projects.iterator(); while (p.hasNext()){ Project prj = (Project) p.next(); ProjectData pd = go(prj,false); // Add datsets (since not resolved because go(*,false) if (null == pd.datasets) pd.datasets = new HashSet(); pd.datasets.add(dd); hierarchies.add(pd); } } } } } emptyCache(); return hierarchies; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
DatasetData dd = go(ds,false); | DatasetData dd = go(ds, false); | public Object doInHibernate(Session session) throws HibernateException { newCache(); //QUERY Query q = session.getNamedQuery("findPDI"); q.setParameterList("img_list", arg0, new IntegerType()); List result = q.list(); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0) { return new HashSet(); } // LOGIC // This is all possible because of the use of the cache! Set hierarchies = new HashSet(); Iterator i = imagesAll.iterator(); while (i.hasNext()) { Image img = (Image) i.next(); ImageData id = go(img,false); // Start using *Data to prevent lazy loading Set datasets = img.getDatasets(); if (datasets == null || datasets.size() < 1){ hierarchies.add(id); } else { Iterator d = datasets.iterator(); while (d.hasNext()) { Dataset ds = (Dataset) d.next(); DatasetData dd = go(ds,false); // Add images (since not resolved because go(*,false); if (null == dd.images) dd.images = new HashSet(); dd.images.add(id); Set projects = ds.getProjects(); if (projects == null || projects.size() < 1) { hierarchies.add(dd); } else { Iterator p = projects.iterator(); while (p.hasNext()){ Project prj = (Project) p.next(); ProjectData pd = go(prj,false); // Add datsets (since not resolved because go(*,false) if (null == pd.datasets) pd.datasets = new HashSet(); pd.datasets.add(dd); hierarchies.add(pd); } } } } } emptyCache(); return hierarchies; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
if (null == dd.images) dd.images = new HashSet(); | if (null == dd.images) dd.images = new HashSet(); | public Object doInHibernate(Session session) throws HibernateException { newCache(); //QUERY Query q = session.getNamedQuery("findPDI"); q.setParameterList("img_list", arg0, new IntegerType()); List result = q.list(); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0) { return new HashSet(); } // LOGIC // This is all possible because of the use of the cache! Set hierarchies = new HashSet(); Iterator i = imagesAll.iterator(); while (i.hasNext()) { Image img = (Image) i.next(); ImageData id = go(img,false); // Start using *Data to prevent lazy loading Set datasets = img.getDatasets(); if (datasets == null || datasets.size() < 1){ hierarchies.add(id); } else { Iterator d = datasets.iterator(); while (d.hasNext()) { Dataset ds = (Dataset) d.next(); DatasetData dd = go(ds,false); // Add images (since not resolved because go(*,false); if (null == dd.images) dd.images = new HashSet(); dd.images.add(id); Set projects = ds.getProjects(); if (projects == null || projects.size() < 1) { hierarchies.add(dd); } else { Iterator p = projects.iterator(); while (p.hasNext()){ Project prj = (Project) p.next(); ProjectData pd = go(prj,false); // Add datsets (since not resolved because go(*,false) if (null == pd.datasets) pd.datasets = new HashSet(); pd.datasets.add(dd); hierarchies.add(pd); } } } } } emptyCache(); return hierarchies; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
public Object doInHibernate(Session session) throws HibernateException { newCache(); //QUERY Query q = session.getNamedQuery("findPDI"); q.setParameterList("img_list", arg0, new IntegerType()); List result = q.list(); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0) { return new HashSet(); } // LOGIC // This is all possible because of the use of the cache! Set hierarchies = new HashSet(); Iterator i = imagesAll.iterator(); while (i.hasNext()) { Image img = (Image) i.next(); ImageData id = go(img,false); // Start using *Data to prevent lazy loading Set datasets = img.getDatasets(); if (datasets == null || datasets.size() < 1){ hierarchies.add(id); } else { Iterator d = datasets.iterator(); while (d.hasNext()) { Dataset ds = (Dataset) d.next(); DatasetData dd = go(ds,false); // Add images (since not resolved because go(*,false); if (null == dd.images) dd.images = new HashSet(); dd.images.add(id); Set projects = ds.getProjects(); if (projects == null || projects.size() < 1) { hierarchies.add(dd); } else { Iterator p = projects.iterator(); while (p.hasNext()){ Project prj = (Project) p.next(); ProjectData pd = go(prj,false); // Add datsets (since not resolved because go(*,false) if (null == pd.datasets) pd.datasets = new HashSet(); pd.datasets.add(dd); hierarchies.add(pd); } } } } } emptyCache(); return hierarchies; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
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while (p.hasNext()){ | while (p.hasNext()) { | public Object doInHibernate(Session session) throws HibernateException { newCache(); //QUERY Query q = session.getNamedQuery("findPDI"); q.setParameterList("img_list", arg0, new IntegerType()); List result = q.list(); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0) { return new HashSet(); } // LOGIC // This is all possible because of the use of the cache! Set hierarchies = new HashSet(); Iterator i = imagesAll.iterator(); while (i.hasNext()) { Image img = (Image) i.next(); ImageData id = go(img,false); // Start using *Data to prevent lazy loading Set datasets = img.getDatasets(); if (datasets == null || datasets.size() < 1){ hierarchies.add(id); } else { Iterator d = datasets.iterator(); while (d.hasNext()) { Dataset ds = (Dataset) d.next(); DatasetData dd = go(ds,false); // Add images (since not resolved because go(*,false); if (null == dd.images) dd.images = new HashSet(); dd.images.add(id); Set projects = ds.getProjects(); if (projects == null || projects.size() < 1) { hierarchies.add(dd); } else { Iterator p = projects.iterator(); while (p.hasNext()){ Project prj = (Project) p.next(); ProjectData pd = go(prj,false); // Add datsets (since not resolved because go(*,false) if (null == pd.datasets) pd.datasets = new HashSet(); pd.datasets.add(dd); hierarchies.add(pd); } } } } } emptyCache(); return hierarchies; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
ProjectData pd = go(prj,false); if (null == pd.datasets) pd.datasets = new HashSet(); | ProjectData pd = go(prj, false); if (null == pd.datasets) pd.datasets = new HashSet(); | public Object doInHibernate(Session session) throws HibernateException { newCache(); //QUERY Query q = session.getNamedQuery("findPDI"); q.setParameterList("img_list", arg0, new IntegerType()); List result = q.list(); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0) { return new HashSet(); } // LOGIC // This is all possible because of the use of the cache! Set hierarchies = new HashSet(); Iterator i = imagesAll.iterator(); while (i.hasNext()) { Image img = (Image) i.next(); ImageData id = go(img,false); // Start using *Data to prevent lazy loading Set datasets = img.getDatasets(); if (datasets == null || datasets.size() < 1){ hierarchies.add(id); } else { Iterator d = datasets.iterator(); while (d.hasNext()) { Dataset ds = (Dataset) d.next(); DatasetData dd = go(ds,false); // Add images (since not resolved because go(*,false); if (null == dd.images) dd.images = new HashSet(); dd.images.add(id); Set projects = ds.getProjects(); if (projects == null || projects.size() < 1) { hierarchies.add(dd); } else { Iterator p = projects.iterator(); while (p.hasNext()){ Project prj = (Project) p.next(); ProjectData pd = go(prj,false); // Add datsets (since not resolved because go(*,false) if (null == pd.datasets) pd.datasets = new HashSet(); pd.datasets.add(dd); hierarchies.add(pd); } } } } } emptyCache(); return hierarchies; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
public Object doInHibernate(Session session) throws HibernateException { newCache(); //QUERY Query q = session.getNamedQuery("findPDI"); q.setParameterList("img_list", arg0, new IntegerType()); List result = q.list(); Set imagesAll = new HashSet(result); if (null == imagesAll || imagesAll.size() == 0) { return new HashSet(); } // LOGIC // This is all possible because of the use of the cache! Set hierarchies = new HashSet(); Iterator i = imagesAll.iterator(); while (i.hasNext()) { Image img = (Image) i.next(); ImageData id = go(img,false); // Start using *Data to prevent lazy loading Set datasets = img.getDatasets(); if (datasets == null || datasets.size() < 1){ hierarchies.add(id); } else { Iterator d = datasets.iterator(); while (d.hasNext()) { Dataset ds = (Dataset) d.next(); DatasetData dd = go(ds,false); // Add images (since not resolved because go(*,false); if (null == dd.images) dd.images = new HashSet(); dd.images.add(id); Set projects = ds.getProjects(); if (projects == null || projects.size() < 1) { hierarchies.add(dd); } else { Iterator p = projects.iterator(); while (p.hasNext()){ Project prj = (Project) p.next(); ProjectData pd = go(prj,false); // Add datsets (since not resolved because go(*,false) if (null == pd.datasets) pd.datasets = new HashSet(); pd.datasets.add(dd); hierarchies.add(pd); } } } } } emptyCache(); return hierarchies; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
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if (! CategoryGroupData.class.equals(arg0) && ! CategoryData.class.equals(arg0)) { | if (!CategoryGroupData.class.equals(arg0) && !CategoryData.class.equals(arg0)) { | public DataObject loadCGCIHierarchy(final Class arg0, final int arg1) { // CONTRACT if (! CategoryGroupData.class.equals(arg0) && ! CategoryData.class.equals(arg0)) { throw new IllegalArgumentException( "Class parameter for loadCGCIHierarchy() must be CategoryGroupData or CategoryData."); } HibernateTemplate ht = new HibernateTemplate(sessions); return (DataObject) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { newCache(); Query q = session.getNamedQuery("CGCI_by_"+arg0.getName()); q.setLong("id", arg1); DataObject dobj; if (arg0.equals(CategoryData.class)){ Category result = (Category) q.uniqueResult(); if (null == result) return null; dobj = go(result); } else { CategoryGroup result = (CategoryGroup) q.uniqueResult(); if (null == result) return null; dobj = go(result); } emptyCache(); return dobj; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
Query q = session.getNamedQuery("CGCI_by_"+arg0.getName()); | Query q = session.getNamedQuery("CGCI_by_" + arg0.getName()); | public DataObject loadCGCIHierarchy(final Class arg0, final int arg1) { // CONTRACT if (! CategoryGroupData.class.equals(arg0) && ! CategoryData.class.equals(arg0)) { throw new IllegalArgumentException( "Class parameter for loadCGCIHierarchy() must be CategoryGroupData or CategoryData."); } HibernateTemplate ht = new HibernateTemplate(sessions); return (DataObject) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { newCache(); Query q = session.getNamedQuery("CGCI_by_"+arg0.getName()); q.setLong("id", arg1); DataObject dobj; if (arg0.equals(CategoryData.class)){ Category result = (Category) q.uniqueResult(); if (null == result) return null; dobj = go(result); } else { CategoryGroup result = (CategoryGroup) q.uniqueResult(); if (null == result) return null; dobj = go(result); } emptyCache(); return dobj; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
if (arg0.equals(CategoryData.class)){ Category result = (Category) q.uniqueResult(); if (null == result) return null; | if (arg0.equals(CategoryData.class)) { Category result = (Category) q.uniqueResult(); if (null == result) return null; | public DataObject loadCGCIHierarchy(final Class arg0, final int arg1) { // CONTRACT if (! CategoryGroupData.class.equals(arg0) && ! CategoryData.class.equals(arg0)) { throw new IllegalArgumentException( "Class parameter for loadCGCIHierarchy() must be CategoryGroupData or CategoryData."); } HibernateTemplate ht = new HibernateTemplate(sessions); return (DataObject) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { newCache(); Query q = session.getNamedQuery("CGCI_by_"+arg0.getName()); q.setLong("id", arg1); DataObject dobj; if (arg0.equals(CategoryData.class)){ Category result = (Category) q.uniqueResult(); if (null == result) return null; dobj = go(result); } else { CategoryGroup result = (CategoryGroup) q.uniqueResult(); if (null == result) return null; dobj = go(result); } emptyCache(); return dobj; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
CategoryGroup result = (CategoryGroup) q.uniqueResult(); if (null == result) return null; | CategoryGroup result = (CategoryGroup) q.uniqueResult(); if (null == result) return null; | public DataObject loadCGCIHierarchy(final Class arg0, final int arg1) { // CONTRACT if (! CategoryGroupData.class.equals(arg0) && ! CategoryData.class.equals(arg0)) { throw new IllegalArgumentException( "Class parameter for loadCGCIHierarchy() must be CategoryGroupData or CategoryData."); } HibernateTemplate ht = new HibernateTemplate(sessions); return (DataObject) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { newCache(); Query q = session.getNamedQuery("CGCI_by_"+arg0.getName()); q.setLong("id", arg1); DataObject dobj; if (arg0.equals(CategoryData.class)){ Category result = (Category) q.uniqueResult(); if (null == result) return null; dobj = go(result); } else { CategoryGroup result = (CategoryGroup) q.uniqueResult(); if (null == result) return null; dobj = go(result); } emptyCache(); return dobj; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
Query q = session.getNamedQuery("CGCI_by_"+arg0.getName()); | Query q = session.getNamedQuery("CGCI_by_" + arg0.getName()); | public Object doInHibernate(Session session) throws HibernateException { newCache(); Query q = session.getNamedQuery("CGCI_by_"+arg0.getName()); q.setLong("id", arg1); DataObject dobj; if (arg0.equals(CategoryData.class)){ Category result = (Category) q.uniqueResult(); if (null == result) return null; dobj = go(result); } else { CategoryGroup result = (CategoryGroup) q.uniqueResult(); if (null == result) return null; dobj = go(result); } emptyCache(); return dobj; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
if (arg0.equals(CategoryData.class)){ Category result = (Category) q.uniqueResult(); if (null == result) return null; | if (arg0.equals(CategoryData.class)) { Category result = (Category) q.uniqueResult(); if (null == result) return null; | public Object doInHibernate(Session session) throws HibernateException { newCache(); Query q = session.getNamedQuery("CGCI_by_"+arg0.getName()); q.setLong("id", arg1); DataObject dobj; if (arg0.equals(CategoryData.class)){ Category result = (Category) q.uniqueResult(); if (null == result) return null; dobj = go(result); } else { CategoryGroup result = (CategoryGroup) q.uniqueResult(); if (null == result) return null; dobj = go(result); } emptyCache(); return dobj; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
CategoryGroup result = (CategoryGroup) q.uniqueResult(); if (null == result) return null; | CategoryGroup result = (CategoryGroup) q.uniqueResult(); if (null == result) return null; | public Object doInHibernate(Session session) throws HibernateException { newCache(); Query q = session.getNamedQuery("CGCI_by_"+arg0.getName()); q.setLong("id", arg1); DataObject dobj; if (arg0.equals(CategoryData.class)){ Category result = (Category) q.uniqueResult(); if (null == result) return null; dobj = go(result); } else { CategoryGroup result = (CategoryGroup) q.uniqueResult(); if (null == result) return null; dobj = go(result); } emptyCache(); return dobj; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
if (! ProjectData.class.equals(arg0) && ! DatasetData.class.equals(arg0)) { | if (!ProjectData.class.equals(arg0) && !DatasetData.class.equals(arg0)) { | public DataObject loadPDIHierarchy(final Class arg0, final int arg1) { // CONTRACT if (! ProjectData.class.equals(arg0) && ! DatasetData.class.equals(arg0)) { throw new IllegalArgumentException( "Class parameter for loadPDIHierarchy() must be ProjectData or DatasetData."); } HibernateTemplate ht = new HibernateTemplate(sessions); return (DataObject) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { newCache(); Query q = session.getNamedQuery("PDI_by_"+arg0.getName()); q.setLong("id", arg1); DataObject dobj; if (arg0.equals(DatasetData.class)){ Dataset result = (Dataset) q.uniqueResult(); if (null == result) return null; dobj = go(result); } else { Project result = (Project) q.uniqueResult(); if (null == result) return null; dobj = go(result); } emptyCache(); return dobj; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
public DataObject loadPDIHierarchy(final Class arg0, final int arg1) { // CONTRACT if (! ProjectData.class.equals(arg0) && ! DatasetData.class.equals(arg0)) { throw new IllegalArgumentException( "Class parameter for loadPDIHierarchy() must be ProjectData or DatasetData."); } HibernateTemplate ht = new HibernateTemplate(sessions); return (DataObject) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { newCache(); Query q = session.getNamedQuery("PDI_by_"+arg0.getName()); q.setLong("id", arg1); DataObject dobj; if (arg0.equals(DatasetData.class)){ Dataset result = (Dataset) q.uniqueResult(); if (null == result) return null; dobj = go(result); } else { Project result = (Project) q.uniqueResult(); if (null == result) return null; dobj = go(result); } emptyCache(); return dobj; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
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Query q = session.getNamedQuery("PDI_by_"+arg0.getName()); | Query q = session.getNamedQuery("PDI_by_" + arg0.getName()); | public DataObject loadPDIHierarchy(final Class arg0, final int arg1) { // CONTRACT if (! ProjectData.class.equals(arg0) && ! DatasetData.class.equals(arg0)) { throw new IllegalArgumentException( "Class parameter for loadPDIHierarchy() must be ProjectData or DatasetData."); } HibernateTemplate ht = new HibernateTemplate(sessions); return (DataObject) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { newCache(); Query q = session.getNamedQuery("PDI_by_"+arg0.getName()); q.setLong("id", arg1); DataObject dobj; if (arg0.equals(DatasetData.class)){ Dataset result = (Dataset) q.uniqueResult(); if (null == result) return null; dobj = go(result); } else { Project result = (Project) q.uniqueResult(); if (null == result) return null; dobj = go(result); } emptyCache(); return dobj; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
if (arg0.equals(DatasetData.class)){ Dataset result = (Dataset) q.uniqueResult(); if (null == result) return null; | if (arg0.equals(DatasetData.class)) { Dataset result = (Dataset) q.uniqueResult(); if (null == result) return null; | public DataObject loadPDIHierarchy(final Class arg0, final int arg1) { // CONTRACT if (! ProjectData.class.equals(arg0) && ! DatasetData.class.equals(arg0)) { throw new IllegalArgumentException( "Class parameter for loadPDIHierarchy() must be ProjectData or DatasetData."); } HibernateTemplate ht = new HibernateTemplate(sessions); return (DataObject) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { newCache(); Query q = session.getNamedQuery("PDI_by_"+arg0.getName()); q.setLong("id", arg1); DataObject dobj; if (arg0.equals(DatasetData.class)){ Dataset result = (Dataset) q.uniqueResult(); if (null == result) return null; dobj = go(result); } else { Project result = (Project) q.uniqueResult(); if (null == result) return null; dobj = go(result); } emptyCache(); return dobj; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
Project result = (Project) q.uniqueResult(); if (null == result) return null; | Project result = (Project) q.uniqueResult(); if (null == result) return null; | public DataObject loadPDIHierarchy(final Class arg0, final int arg1) { // CONTRACT if (! ProjectData.class.equals(arg0) && ! DatasetData.class.equals(arg0)) { throw new IllegalArgumentException( "Class parameter for loadPDIHierarchy() must be ProjectData or DatasetData."); } HibernateTemplate ht = new HibernateTemplate(sessions); return (DataObject) ht.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException { newCache(); Query q = session.getNamedQuery("PDI_by_"+arg0.getName()); q.setLong("id", arg1); DataObject dobj; if (arg0.equals(DatasetData.class)){ Dataset result = (Dataset) q.uniqueResult(); if (null == result) return null; dobj = go(result); } else { Project result = (Project) q.uniqueResult(); if (null == result) return null; dobj = go(result); } emptyCache(); return dobj; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
Query q = session.getNamedQuery("PDI_by_"+arg0.getName()); | Query q = session.getNamedQuery("PDI_by_" + arg0.getName()); | public Object doInHibernate(Session session) throws HibernateException { newCache(); Query q = session.getNamedQuery("PDI_by_"+arg0.getName()); q.setLong("id", arg1); DataObject dobj; if (arg0.equals(DatasetData.class)){ Dataset result = (Dataset) q.uniqueResult(); if (null == result) return null; dobj = go(result); } else { Project result = (Project) q.uniqueResult(); if (null == result) return null; dobj = go(result); } emptyCache(); return dobj; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
if (arg0.equals(DatasetData.class)){ Dataset result = (Dataset) q.uniqueResult(); if (null == result) return null; | if (arg0.equals(DatasetData.class)) { Dataset result = (Dataset) q.uniqueResult(); if (null == result) return null; | public Object doInHibernate(Session session) throws HibernateException { newCache(); Query q = session.getNamedQuery("PDI_by_"+arg0.getName()); q.setLong("id", arg1); DataObject dobj; if (arg0.equals(DatasetData.class)){ Dataset result = (Dataset) q.uniqueResult(); if (null == result) return null; dobj = go(result); } else { Project result = (Project) q.uniqueResult(); if (null == result) return null; dobj = go(result); } emptyCache(); return dobj; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
Project result = (Project) q.uniqueResult(); if (null == result) return null; | Project result = (Project) q.uniqueResult(); if (null == result) return null; | public Object doInHibernate(Session session) throws HibernateException { newCache(); Query q = session.getNamedQuery("PDI_by_"+arg0.getName()); q.setLong("id", arg1); DataObject dobj; if (arg0.equals(DatasetData.class)){ Dataset result = (Dataset) q.uniqueResult(); if (null == result) return null; dobj = go(result); } else { Project result = (Project) q.uniqueResult(); if (null == result) return null; dobj = go(result); } emptyCache(); return dobj; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
void toCache(Object key, Object value) { // FIXME Why are there NULLs in the Cache!!!! ((Map) cache.get()).put(key, value); // TODO return either original value or a new one -- tough. Not when all inherit from a single DataObject!!?? } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/8442e37c365d8ade04f3bf94b6b000049c740d2a/HierarchyBrowsingImpl.java/buggy/components/wars/srv/src/java/org/ome/omero/logic/HierarchyBrowsingImpl.java |
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if (p == null) { wc.getLog("RecentChanges").error ("WikiPage for " + pageNames[x] + " not found in wiki system. Skipping"); continue; } | public void perform(WikiSystem wiki, WebContext wc, WikiUser user, WikiPage page) throws PageAction.PageActionException { List pages = new ArrayList (); String[] pageNames = wiki.getCurrentPageNames(); double days = 7D; // figure out how many days to show if (wc.getForm ("days") != null) { try { days = Double.parseDouble (wc.getForm ("days")); } catch (Exception e) { // not a number, so stick with default } } else if (user != null) { // nothing in request, so use user preference try { days = Double.parseDouble (user.getAttribute ("RecentChangesDays")); } catch (Exception e) { // not a number, so stick with default } } // and set it as the user preference if (user != null) { user.setAttribute ("RecentChangesDays", ""+days); wiki.updateUser(user); } // build a list of pages that have been modified in the past // <em>days</em> days long cutoff = System.currentTimeMillis() - (long) (60*60*24*1000*days); for (int x=0; x<pageNames.length; x++) { WikiPage p = wiki.getPage (pageNames[x]); if (p.getDateLastModifiedAsLong() >= cutoff) pages.add (p); } // sort it descending by date last modified Collections.sort (pages, new Comparator () { public int compare (Object o1, Object o2) { WikiPage p1 = (WikiPage) o1; WikiPage p2 = (WikiPage) o2; return p2.getDateLastModified().compareTo (p1.getDateLastModified()); } }); // and add list to the context wc.put ("RecentChanges", pages); wc.put ("Days", days); } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/db4fefa87dec8d716fc2d84cb0b5647665ec65f8/RecentChangesAction.java/buggy/wiki/src/org/tcdi/opensource/wiki/servlet/RecentChangesAction.java |
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if (user == null) return; if (groups == null) return; Experimenter foundUser = iQuery.get(Experimenter.class,user.getId()); for (ExperimenterGroup group : groups) { ExperimenterGroup foundGroup = iQuery.get(ExperimenterGroup.class, group.getId()); foundUser.linkExperimenterGroup(foundGroup); } iUpdate.flush(); | public void addGroups(Experimenter user, ExperimenterGroup[] groups) { // TODO Auto-generated method stub } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/d4a4fd19dcb38c276cd70b93f33ec7f9c4156452/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
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if (model.getTreeView() == null) model.createTreeView(); | void showTreeView(boolean b) { Container container = getContentPane(); if (b) { JSplitPane treeViewPane = new JSplitPane(); treeViewPane.setOrientation(JSplitPane.HORIZONTAL_SPLIT); treeViewPane.setOneTouchExpandable(true); treeViewPane.setContinuousLayout(true); treeViewPane.setLeftComponent(model.getTreeView()); treeViewPane.setRightComponent(mainPane); container.remove(mainPane); container.add(treeViewPane, BorderLayout.CENTER); } else { container.removeAll(); addToContainer(mainPane); } container.validate(); container.repaint(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/df2a60bc22b2182d3cbb3f204d3ec09a6dac6a1d/HiViewerWin.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/view/HiViewerWin.java |
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channel.close(); | if (channel != null) channel.close(); | public void close() throws IOException { channel.close(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e90cfb321efdaad7f6cf723d38ed886d6dbaf609/FileBuffer.java/buggy/components/romio/src/ome/io/nio/FileBuffer.java |
this.positionFactory = new SourcePositionFactory(); | this.positionFactory = new SourcePositionFactory(this); | public LexerSource(String sourceName, Reader reader) { this.sourceName = sourceName; this.reader = reader; this.positionFactory = new SourcePositionFactory(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b1293eda8454686e846e2a9837b348e2983bb423/LexerSource.java/clean/src/org/jruby/lexer/yacc/LexerSource.java |
br = new BufferedReader(new FileReader(sourceFile)); | br = new BufferedReader(new InputStreamReader(new FileInputStream(sourceFile), "UTF-8")); } catch (UnsupportedEncodingException e) { return "<p>Unable to open " + sourceFile.getAbsolutePath() + ": The encoding 'UTF-8' is not supported by your JVM.</p>"; | private String generateHtmlizedJavaSource(SourceFileData sourceFileData) { File sourceFile = null; try { sourceFile = finder.getFileForSource(sourceFileData.getName()); } catch (IOException e) { return "<p>Unable to locate " + sourceFileData.getName() + ". Have you specified the source directory?</p>"; } BufferedReader br = null; try { br = new BufferedReader(new FileReader(sourceFile)); } catch (FileNotFoundException e) { return "<p>Unable to open " + sourceFile.getAbsolutePath() + "</p>"; } StringBuffer ret = new StringBuffer(); ret .append("<table cellspacing=\"0\" cellpadding=\"0\" class=\"src\">\n"); try { String lineStr; JavaToHtml javaToHtml = new JavaToHtml(); int lineNumber = 1; while ((lineStr = br.readLine()) != null) { ret.append("<tr>"); if (sourceFileData.isValidSourceLineNumber(lineNumber)) { long numberOfHits = sourceFileData.getHitCount(lineNumber); ret.append(" <td class=\"numLineCover\"> " + lineNumber + "</td>"); if (numberOfHits > 0) { ret.append(" <td class=\"nbHitsCovered\"> " + numberOfHits + "</td>"); ret .append(" <td class=\"src\"><pre class=\"src\"> " + javaToHtml.process(lineStr) + "</pre></td>"); } else { ret.append(" <td class=\"nbHitsUncovered\"> " + numberOfHits + "</td>"); ret .append(" <td class=\"src\"><pre class=\"src\"><span class=\"srcUncovered\"> " + javaToHtml.process(lineStr) + "</span></pre></td>"); } } else { ret.append(" <td class=\"numLine\"> " + lineNumber + "</td>"); ret.append(" <td class=\"nbHits\"> </td>\n"); ret.append(" <td class=\"src\"><pre class=\"src\"> " + javaToHtml.process(lineStr) + "</pre></td>"); } ret.append("</tr>\n"); lineNumber++; } } catch (IOException e) { ret.append("<tr><td>Error reading from file " + sourceFile.getAbsolutePath() + ": " + e.getLocalizedMessage() + "</td></tr>\n"); } finally { try { br.close(); } catch (IOException e) { } } ret.append("</table>\n"); return ret.toString(); } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/84e7aec08b6ae2534d7a85ebb3c07a0ec1dec0c8/HTMLReport.java/clean/cobertura/src/net/sourceforge/cobertura/reporting/html/HTMLReport.java |
out = new PrintStream(new FileOutputStream(file)); | out = new PrintStream(new FileOutputStream(file), false, "UTF-8"); | private void generateOverview(PackageData packageData) throws IOException { Iterator iter; String filename; if (packageData == null) { filename = "frame-summary.html"; } else { filename = "frame-summary-" + packageData.getName() + ".html"; } File file = new File(destinationDir, filename); PrintStream out = null; try { out = new PrintStream(new FileOutputStream(file)); out .println("<!DOCTYPE html PUBLIC \"-//W3C//DTD XHTML 1.0 Transitional//EN\""); out .println(" \"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd\">"); out.println("<html>"); out.println("<head>"); out .println("<meta http-equiv=\"Content-Type\" content=\"text/html; charset=UTF-8\"/>"); out.println("<title>Coverage Report</title>"); out .println("<link title=\"Style\" type=\"text/css\" rel=\"stylesheet\" href=\"css/main.css\"/>"); out .println("<link title=\"Style\" type=\"text/css\" rel=\"stylesheet\" href=\"css/sortabletable.css\"/>"); out .println("<script type=\"text/javascript\" src=\"js/popup.js\"></script>"); out .println("<script type=\"text/javascript\" src=\"js/sortabletable.js\"></script>"); out .println("<script type=\"text/javascript\" src=\"js/customsorttypes.js\"></script>"); out.println("</head>"); out.println("<body>"); out.print("<h5>Coverage Report - "); out.print(packageData == null ? "All Packages" : generatePackageName(packageData)); out.println("</h5>"); out.println("<div class=\"separator\"> </div>"); out.println("<table class=\"report\" id=\"packageResults\">"); out.println(generateTableHeader("Package", true)); out.println("<tbody>"); SortedSet packages; if (packageData == null) { // Output a summary line for all packages out.println(generateTableRowForTotal()); // Get packages packages = projectData.getPackages(); } else { // Get subpackages packages = projectData.getSubPackages(packageData.getName()); } // Output a line for each package or subpackage iter = packages.iterator(); while (iter.hasNext()) { PackageData subPackageData = (PackageData)iter.next(); out.println(generateTableRowForPackage(subPackageData)); } out.println("</tbody>"); out.println("</table>"); out.println("<script type=\"text/javascript\">"); out .println("var packageTable = new SortableTable(document.getElementById(\"packageResults\"),"); out .println(" [\"String\", \"Number\", \"Percentage\", \"Percentage\", \"FormattedNumber\"]);"); out.println("packageTable.sort(0);"); out.println("</script>"); // Get the list of source files in this package Collection sourceFiles; if (packageData == null) { PackageData defaultPackage = (PackageData)projectData .getChild(""); if (defaultPackage != null) { sourceFiles = defaultPackage.getSourceFiles(); } else { sourceFiles = new TreeSet(); } } else { sourceFiles = packageData.getSourceFiles(); } // Output a line for each source file if (sourceFiles.size() > 0) { out.println("<div class=\"separator\"> </div>"); out.println("<table class=\"report\" id=\"classResults\">"); out.println(generateTableHeader("Classes in this Package", false)); out.println("<tbody>"); iter = sourceFiles.iterator(); while (iter.hasNext()) { SourceFileData sourceFileData = (SourceFileData)iter.next(); out.println(generateTableRowsForSourceFile(sourceFileData)); } out.println("</tbody>"); out.println("</table>"); out.println("<script type=\"text/javascript\">"); out .println("var classTable = new SortableTable(document.getElementById(\"classResults\"),"); out .println(" [\"String\", \"Percentage\", \"Percentage\", \"FormattedNumber\"]);"); out.println("classTable.sort(0);"); out.println("</script>"); } out.println(generateFooter()); out.println("</body>"); out.println("</html>"); } finally { if (out != null) { out.close(); } } } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/84e7aec08b6ae2534d7a85ebb3c07a0ec1dec0c8/HTMLReport.java/clean/cobertura/src/net/sourceforge/cobertura/reporting/html/HTMLReport.java |
out = new PrintStream(new FileOutputStream(file)); | out = new PrintStream(new FileOutputStream(file), false, "UTF-8"); | private void generatePackageList() throws IOException { File file = new File(destinationDir, "frame-packages.html"); PrintStream out = null; try { out = new PrintStream(new FileOutputStream(file)); out .println("<!DOCTYPE html PUBLIC \"-//W3C//DTD XHTML 1.0 Transitional//EN\""); out .println(" \"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd\">"); out .println("<html xmlns=\"http://www.w3.org/1999/xhtml\" xml:lang=\"en\" lang=\"en\">"); out.println("<head>"); out .println("<meta http-equiv=\"Content-Type\" content=\"text/html; charset=UTF-8\" />"); out.println("<title>Coverage Report</title>"); out .println("<link title=\"Style\" type=\"text/css\" rel=\"stylesheet\" href=\"css/main.css\" />"); out.println("</head>"); out.println("<body>"); out.println("<h5>Packages</h5>"); out.println("<table width=\"100%\">"); out.println("<tr>"); out .println("<td nowrap=\"nowrap\"><a href=\"frame-summary.html\" onclick='parent.sourceFileList.location.href=\"frame-sourcefiles.html\"' target=\"summary\">All</a></td>"); out.println("</tr>"); Iterator iter = projectData.getPackages().iterator(); while (iter.hasNext()) { PackageData packageData = (PackageData)iter.next(); String url1 = "frame-summary-" + packageData.getName() + ".html"; String url2 = "frame-sourcefiles-" + packageData.getName() + ".html"; out.println("<tr>"); out.println("<td nowrap=\"nowrap\"><a href=\"" + url1 + "\" onclick='parent.sourceFileList.location.href=\"" + url2 + "\"' target=\"summary\">" + generatePackageName(packageData) + "</a></td>"); out.println("</tr>"); } out.println("</table>"); out.println("</body>"); out.println("</html>"); } finally { if (out != null) { out.close(); } } } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/84e7aec08b6ae2534d7a85ebb3c07a0ec1dec0c8/HTMLReport.java/clean/cobertura/src/net/sourceforge/cobertura/reporting/html/HTMLReport.java |
out = new PrintStream(new FileOutputStream(file)); | out = new PrintStream(new FileOutputStream(file), false, "UTF-8"); | private void generateSourceFile(SourceFileData sourceFileData) throws IOException { if (!sourceFileData.containsInstrumentationInfo()) { LOGGER.info("Data file does not contain instrumentation " + "information for the file " + sourceFileData.getName() + ". Ensure this class was instrumented, and this " + "data file contains the instrumentation information."); } String filename = sourceFileData.getNormalizedName() + ".html"; File file = new File(destinationDir, filename); PrintStream out = null; try { out = new PrintStream(new FileOutputStream(file)); out .println("<!DOCTYPE html PUBLIC \"-//W3C//DTD XHTML 1.0 Transitional//EN\""); out .println(" \"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd\">"); out.println("<html>"); out.println("<head>"); out .println("<meta http-equiv=\"Content-Type\" content=\"text/html; charset=UTF-8\"/>"); out.println("<title>Coverage Report</title>"); out .println("<link title=\"Style\" type=\"text/css\" rel=\"stylesheet\" href=\"css/main.css\"/>"); out .println("<script type=\"text/javascript\" src=\"js/popup.js\"></script>"); out.println("</head>"); out.println("<body>"); out.print("<h5>Coverage Report - "); String classPackageName = sourceFileData.getPackageName(); if ((classPackageName != null) && classPackageName.length() > 0) { out.print(classPackageName + "."); } out.print(sourceFileData.getBaseName()); out.println("</h5>"); // Output the coverage summary for this class out.println("<div class=\"separator\"> </div>"); out.println("<table class=\"report\">"); out.println(generateTableHeader("Classes in this File", false)); out.println(generateTableRowsForSourceFile(sourceFileData)); out.println("</table>"); // Output the coverage summary for methods in this class // TODO // Output this class's source code with syntax and coverage highlighting out.println("<div class=\"separator\"> </div>"); out.println(generateHtmlizedJavaSource(sourceFileData)); out.println(generateFooter()); out.println("</body>"); out.println("</html>"); } finally { if (out != null) { out.close(); } } } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/84e7aec08b6ae2534d7a85ebb3c07a0ec1dec0c8/HTMLReport.java/clean/cobertura/src/net/sourceforge/cobertura/reporting/html/HTMLReport.java |
out = new PrintStream(new FileOutputStream(file)); | out = new PrintStream(new FileOutputStream(file), false, "UTF-8"); | private void generateSourceFileList(PackageData packageData) throws IOException { String filename; Collection sourceFiles; if (packageData == null) { filename = "frame-sourcefiles.html"; sourceFiles = projectData.getSourceFiles(); } else { filename = "frame-sourcefiles-" + packageData.getName() + ".html"; sourceFiles = packageData.getSourceFiles(); } // sourceFiles may be sorted, but if so it's sorted by // the full path to the file, and we only want to sort // based on the file's basename. Vector sortedSourceFiles = new Vector(); sortedSourceFiles.addAll(sourceFiles); Collections.sort(sortedSourceFiles, new SourceFileDataBaseNameComparator()); File file = new File(destinationDir, filename); PrintStream out = null; try { out = new PrintStream(new FileOutputStream(file)); out .println("<!DOCTYPE html PUBLIC \"-//W3C//DTD XHTML 1.0 Transitional//EN\""); out .println(" \"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd\">"); out.println("<html>"); out.println("<head>"); out .println("<meta http-equiv=\"Content-Type\" content=\"text/html; charset=UTF-8\"/>"); out.println("<title>Coverage Report Classes</title>"); out .println("<link title=\"Style\" type=\"text/css\" rel=\"stylesheet\" href=\"css/main.css\"/>"); out.println("</head>"); out.println("<body>"); out.println("<h5>"); out.println(packageData == null ? "All Packages" : generatePackageName(packageData)); out.println("</h5>"); out.println("<div class=\"separator\"> </div>"); out.println("<h5>Classes</h5>"); if (!sortedSourceFiles.isEmpty()) { out.println("<table width=\"100%\">"); out.println("<tbody>"); for (Iterator iter = sortedSourceFiles.iterator(); iter .hasNext();) { SourceFileData sourceFileData = (SourceFileData)iter.next(); out.println("<tr>"); String percentCovered; if (sourceFileData.getNumberOfValidLines() > 0) percentCovered = getPercentValue(sourceFileData .getLineCoverageRate()); else percentCovered = "N/A"; out .println("<td nowrap=\"nowrap\"><a target=\"summary\" href=\"" + sourceFileData.getNormalizedName() + ".html\">" + sourceFileData.getBaseName() + "</a> <i>(" + percentCovered + ")</i></td>"); out.println("</tr>"); } out.println("</tbody>"); out.println("</table>"); } out.println("</body>"); out.println("</html>"); } finally { if (out != null) { out.close(); } } } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/84e7aec08b6ae2534d7a85ebb3c07a0ec1dec0c8/HTMLReport.java/clean/cobertura/src/net/sourceforge/cobertura/reporting/html/HTMLReport.java |
args[0] = new RubyFixnum(ruby, 18000000); | args[0] = RubyFixnum.newFixnum(ruby, 18000000); | public void setUp() { ruby = Ruby.getDefaultInstance(null); rubyTime = ruby.getClasses().getTimeClass(); RubyObject[] args = new RubyObject[1]; args[0] = new RubyFixnum(ruby, 18000000); nineTeenSeventy = RubyTime.s_at(ruby, rubyTime, args); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/afb67c3765f6466c476317e6bb0c72f6593f05f3/TestRubyTime.java/clean/org/jruby/test/TestRubyTime.java |
registry = control.getRegistry(); pixelsID = control.getCurPixelsID(); | public PlayerManager(Player view, ViewerCtrl control, int max, int index, int s, int e) { this.view = view; this.control = control; setIndex(index, max, s, e); movieType = Player.LOOP; registry = control.getRegistry(); pixelsID = control.getCurPixelsID(); playing = false; pause = false; up = true; delay = DELAY/Player.FPS_INIT; //Set up a timer that calls this object's action handler. timer = new Timer(delay, this); timer.setInitialDelay(delay);//*10?? timer.setCoalesce(true); attachListener(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/480bfd2454ecc542e0e0b43caa0d0de01b218f9f/PlayerManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/viewer/movie/PlayerManager.java |
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control.resetZField(v); } else control.resetTField(v); PlaneDef def = new PlaneDef(PlaneDef.XY, t); def.setZ(z); RenderImage render = new RenderImage(pixelsID, def); registry.getEventBus().post(render); | } control.renderImage(z, t); | private void renderImage(int v) { int t = v, z = curValue; if (index == Player.MOVIE_Z) { t = curValue; z = v; control.resetZField(v); } else control.resetTField(v); PlaneDef def = new PlaneDef(PlaneDef.XY, t); def.setZ(z); RenderImage render = new RenderImage(pixelsID, def); registry.getEventBus().post(render); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/480bfd2454ecc542e0e0b43caa0d0de01b218f9f/PlayerManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/viewer/movie/PlayerManager.java |
public RubyObject call(RubyObject recv, RubyId mid, RubyObject[] args, int scope) { | public RubyObject call(RubyObject recv, RubyId mid, RubyPointer args, int scope) { | public RubyObject call(RubyObject recv, RubyId mid, RubyObject[] args, int scope) { RubyMethodCacheEntry ent = RubyMethodCacheEntry.getEntry(getRuby(), this, mid); RubyModule klass = this; RubyId id = mid; int noex; Node body; if (ent != null) { if (ent.getMethod() == null) { throw new RuntimeException("Undefined"); } klass = ent.getOrigin(); id = ent.getMid0(); noex = ent.getNoex(); body = ent.getMethod(); } else { GetMethodBodyResult gmbr = getMethodBody(id, 0); klass = gmbr.getRecvClass(); id = gmbr.getId(); noex = gmbr.getNoex(); body = gmbr.getBody(); if (body == null) { if (scope == 3) { throw new RubyNameException("super: no superclass method '" + mid.toName() + "'"); } throw new RuntimeException("Undefined"); } } // if (mid != missing) { // /* receiver specified form for private method */ // if ((noex & NOEX_PRIVATE) && scope == 0) // return rb_undefined(recv, mid, argc, argv, CSTAT_PRIV); // /* self must be kind of a specified form for private method */ // if ((noex & NOEX_PROTECTED)) { // VALUE defined_class = klass; // while (TYPE(defined_class) == T_ICLASS) // defined_class = RBASIC(defined_class)->klass; // if (!rb_obj_is_kind_of(ruby_frame->self, defined_class)) // return rb_undefined(recv, mid, argc, argv, CSTAT_PROT); // } // } // ... return klass.call0(recv, id, args, body, false); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/f629550c5947df9c1dbe414645f3dc76bcb70df4/RubyModule.java/buggy/org/jruby/RubyModule.java |
public RubyObject call0(RubyObject recv, RubyId id, RubyObject[] args, Node body, boolean noSuper) { | public RubyObject call0(RubyObject recv, RubyId id, RubyPointer args, Node body, boolean noSuper) { | public RubyObject call0(RubyObject recv, RubyId id, RubyObject[] args, Node body, boolean noSuper) { // ... getRuby().getRubyFrame().push(); // HACK +++ getRuby().getIter().push(RubyIter.ITER_NOT); // HACK --- getRuby().getRubyFrame().setLastFunc(id); getRuby().getRubyFrame().setLastClass(noSuper ? null : this); getRuby().getRubyFrame().setSelf(recv); getRuby().getRubyFrame().setArgs(new RubyPointer(args)); RubyObject result = getRuby().getNil(); if (body instanceof CallableNode) { result = ((CallableNode)body).call(getRuby(), recv, id, args, noSuper); } else { System.out.println("{BUG] Not implemented yet (method call): " + id.toName() + ", node_type:" + body.getType()); } /*switch (body.nd_type()) { case NODE_ZSUPER: case NODE_ATTRSET: case NODE_IVAR: { result = body.interpreter.eval(recv, body); break; } case NODE_SCOPE: { NODE savedCref = null; // VALUE[] localVars = null; ShiftableList argsList = new ShiftableList(args); ShiftableList localVarsList = null; getRuby().getRubyScope().push(); if (body.nd_rval() != null) { savedCref = getRuby().getRubyCRef(); getRuby().setRubyCRef((NODE)body.nd_rval()); getRuby().getRubyFrame().setCbase(body.nd_rval()); } if (body.nd_tbl() != null) { // ? +++ List tmpList = Collections.nCopies(body.nd_tbl()[0].intValue() + 1, getRuby().getNil()); // ? --- localVarsList = new ShiftableList(new ArrayList(tmpList)); localVarsList.set(0, body); localVarsList.shift(1); getRuby().getRubyScope().setLocalTbl(body.nd_tbl()); getRuby().getRubyScope().setLocalVars(localVarsList.getList()); } else { localVarsList = getRuby().getRubyScope().getLocalVars(); getRuby().getRubyScope().setLocalVars(null); getRuby().getRubyScope().setLocalTbl(null); } body = body.nd_next(); RubyVarmap.push(getRuby()); // PUSH_TAG(PROT_FUNC); try { NODE node = null; int i; if (body.nd_type() == NODE_ARGS) { node = body; body = null; } else if (body.nd_type() == NODE_BLOCK) { node = body.nd_head(); body = body.nd_next(); } if (node != null) { if (node.nd_type() != NODE_ARGS) { // rb_bug("no argument-node"); } i = node.nd_cnt(); if (i > (args != null ? args.length : 0)) { throw new RubyArgumentException("wrong # of arguments(" + args.length + " for " + i + ")"); } if (node.nd_rest() == -1) { int opt = i; NODE optnode = node.nd_opt(); while (optnode != null) { opt++; optnode = optnode.nd_next(); } if (opt < (args != null ? args.length : 0)) { throw new RubyArgumentException("wrong # of arguments(" + args.length + " for " + opt + ")"); } getRuby().getRubyFrame().setArgs(localVarsList != null ? localVarsList.getList(2) : null); } if (localVarsList != null) { if (i > 0) { localVarsList.shift(2); for (int j = 0; j < i; j++ ) { localVarsList.set(j, argsList.get(j)); } localVarsList.shiftLeft(2); } argsList.shift(i); if (node.nd_opt() != null) { NODE opt = node.nd_opt(); while (opt != null && argsList.size() != 0) { interpreter.assign(recv, opt.nd_head(), (RubyObject)argsList.get(0), true); argsList.shift(1); opt = opt.nd_next(); } interpreter.eval(recv, opt); } if (node.nd_rest() >= 0) { RubyArray array = null; if (argsList.size() > 0) { array = RubyArray.m_newArray(getRuby(), argsList); } else { array = RubyArray.m_newArray(getRuby(), 0); } localVarsList.set(node.nd_rest(), array); } } } result = interpreter.eval(recv, body); } catch (ReturnException rExcptn) { } RubyVarmap.pop(getRuby()); getRuby().getRubyScope().pop(); getRuby().setRubyCRef(savedCref); break; } default: { System.out.println("Not implemented yet (method call): " + id.toName() + ", node_type:" + body.nd_type()); } } */ getRuby().getRubyFrame().pop(); getRuby().getIter().pop(); return result ; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/f629550c5947df9c1dbe414645f3dc76bcb70df4/RubyModule.java/buggy/org/jruby/RubyModule.java |
getRuby().getRubyFrame().push(); | if (getRuby().getIter().getIter() == RubyIter.ITER_PRE) { getRuby().getIter().push(RubyIter.ITER_CUR); } else { getRuby().getIter().push(RubyIter.ITER_NOT); } | public RubyObject call0(RubyObject recv, RubyId id, RubyObject[] args, Node body, boolean noSuper) { // ... getRuby().getRubyFrame().push(); // HACK +++ getRuby().getIter().push(RubyIter.ITER_NOT); // HACK --- getRuby().getRubyFrame().setLastFunc(id); getRuby().getRubyFrame().setLastClass(noSuper ? null : this); getRuby().getRubyFrame().setSelf(recv); getRuby().getRubyFrame().setArgs(new RubyPointer(args)); RubyObject result = getRuby().getNil(); if (body instanceof CallableNode) { result = ((CallableNode)body).call(getRuby(), recv, id, args, noSuper); } else { System.out.println("{BUG] Not implemented yet (method call): " + id.toName() + ", node_type:" + body.getType()); } /*switch (body.nd_type()) { case NODE_ZSUPER: case NODE_ATTRSET: case NODE_IVAR: { result = body.interpreter.eval(recv, body); break; } case NODE_SCOPE: { NODE savedCref = null; // VALUE[] localVars = null; ShiftableList argsList = new ShiftableList(args); ShiftableList localVarsList = null; getRuby().getRubyScope().push(); if (body.nd_rval() != null) { savedCref = getRuby().getRubyCRef(); getRuby().setRubyCRef((NODE)body.nd_rval()); getRuby().getRubyFrame().setCbase(body.nd_rval()); } if (body.nd_tbl() != null) { // ? +++ List tmpList = Collections.nCopies(body.nd_tbl()[0].intValue() + 1, getRuby().getNil()); // ? --- localVarsList = new ShiftableList(new ArrayList(tmpList)); localVarsList.set(0, body); localVarsList.shift(1); getRuby().getRubyScope().setLocalTbl(body.nd_tbl()); getRuby().getRubyScope().setLocalVars(localVarsList.getList()); } else { localVarsList = getRuby().getRubyScope().getLocalVars(); getRuby().getRubyScope().setLocalVars(null); getRuby().getRubyScope().setLocalTbl(null); } body = body.nd_next(); RubyVarmap.push(getRuby()); // PUSH_TAG(PROT_FUNC); try { NODE node = null; int i; if (body.nd_type() == NODE_ARGS) { node = body; body = null; } else if (body.nd_type() == NODE_BLOCK) { node = body.nd_head(); body = body.nd_next(); } if (node != null) { if (node.nd_type() != NODE_ARGS) { // rb_bug("no argument-node"); } i = node.nd_cnt(); if (i > (args != null ? args.length : 0)) { throw new RubyArgumentException("wrong # of arguments(" + args.length + " for " + i + ")"); } if (node.nd_rest() == -1) { int opt = i; NODE optnode = node.nd_opt(); while (optnode != null) { opt++; optnode = optnode.nd_next(); } if (opt < (args != null ? args.length : 0)) { throw new RubyArgumentException("wrong # of arguments(" + args.length + " for " + opt + ")"); } getRuby().getRubyFrame().setArgs(localVarsList != null ? localVarsList.getList(2) : null); } if (localVarsList != null) { if (i > 0) { localVarsList.shift(2); for (int j = 0; j < i; j++ ) { localVarsList.set(j, argsList.get(j)); } localVarsList.shiftLeft(2); } argsList.shift(i); if (node.nd_opt() != null) { NODE opt = node.nd_opt(); while (opt != null && argsList.size() != 0) { interpreter.assign(recv, opt.nd_head(), (RubyObject)argsList.get(0), true); argsList.shift(1); opt = opt.nd_next(); } interpreter.eval(recv, opt); } if (node.nd_rest() >= 0) { RubyArray array = null; if (argsList.size() > 0) { array = RubyArray.m_newArray(getRuby(), argsList); } else { array = RubyArray.m_newArray(getRuby(), 0); } localVarsList.set(node.nd_rest(), array); } } } result = interpreter.eval(recv, body); } catch (ReturnException rExcptn) { } RubyVarmap.pop(getRuby()); getRuby().getRubyScope().pop(); getRuby().setRubyCRef(savedCref); break; } default: { System.out.println("Not implemented yet (method call): " + id.toName() + ", node_type:" + body.nd_type()); } } */ getRuby().getRubyFrame().pop(); getRuby().getIter().pop(); return result ; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/f629550c5947df9c1dbe414645f3dc76bcb70df4/RubyModule.java/buggy/org/jruby/RubyModule.java |
getRuby().getIter().push(RubyIter.ITER_NOT); | RubyFrame frame = getRuby().getRubyFrame(); frame.push(); frame.setLastFunc(id); frame.setLastClass(noSuper ? null : this); frame.setSelf(recv); frame.setArgs(args); | public RubyObject call0(RubyObject recv, RubyId id, RubyObject[] args, Node body, boolean noSuper) { // ... getRuby().getRubyFrame().push(); // HACK +++ getRuby().getIter().push(RubyIter.ITER_NOT); // HACK --- getRuby().getRubyFrame().setLastFunc(id); getRuby().getRubyFrame().setLastClass(noSuper ? null : this); getRuby().getRubyFrame().setSelf(recv); getRuby().getRubyFrame().setArgs(new RubyPointer(args)); RubyObject result = getRuby().getNil(); if (body instanceof CallableNode) { result = ((CallableNode)body).call(getRuby(), recv, id, args, noSuper); } else { System.out.println("{BUG] Not implemented yet (method call): " + id.toName() + ", node_type:" + body.getType()); } /*switch (body.nd_type()) { case NODE_ZSUPER: case NODE_ATTRSET: case NODE_IVAR: { result = body.interpreter.eval(recv, body); break; } case NODE_SCOPE: { NODE savedCref = null; // VALUE[] localVars = null; ShiftableList argsList = new ShiftableList(args); ShiftableList localVarsList = null; getRuby().getRubyScope().push(); if (body.nd_rval() != null) { savedCref = getRuby().getRubyCRef(); getRuby().setRubyCRef((NODE)body.nd_rval()); getRuby().getRubyFrame().setCbase(body.nd_rval()); } if (body.nd_tbl() != null) { // ? +++ List tmpList = Collections.nCopies(body.nd_tbl()[0].intValue() + 1, getRuby().getNil()); // ? --- localVarsList = new ShiftableList(new ArrayList(tmpList)); localVarsList.set(0, body); localVarsList.shift(1); getRuby().getRubyScope().setLocalTbl(body.nd_tbl()); getRuby().getRubyScope().setLocalVars(localVarsList.getList()); } else { localVarsList = getRuby().getRubyScope().getLocalVars(); getRuby().getRubyScope().setLocalVars(null); getRuby().getRubyScope().setLocalTbl(null); } body = body.nd_next(); RubyVarmap.push(getRuby()); // PUSH_TAG(PROT_FUNC); try { NODE node = null; int i; if (body.nd_type() == NODE_ARGS) { node = body; body = null; } else if (body.nd_type() == NODE_BLOCK) { node = body.nd_head(); body = body.nd_next(); } if (node != null) { if (node.nd_type() != NODE_ARGS) { // rb_bug("no argument-node"); } i = node.nd_cnt(); if (i > (args != null ? args.length : 0)) { throw new RubyArgumentException("wrong # of arguments(" + args.length + " for " + i + ")"); } if (node.nd_rest() == -1) { int opt = i; NODE optnode = node.nd_opt(); while (optnode != null) { opt++; optnode = optnode.nd_next(); } if (opt < (args != null ? args.length : 0)) { throw new RubyArgumentException("wrong # of arguments(" + args.length + " for " + opt + ")"); } getRuby().getRubyFrame().setArgs(localVarsList != null ? localVarsList.getList(2) : null); } if (localVarsList != null) { if (i > 0) { localVarsList.shift(2); for (int j = 0; j < i; j++ ) { localVarsList.set(j, argsList.get(j)); } localVarsList.shiftLeft(2); } argsList.shift(i); if (node.nd_opt() != null) { NODE opt = node.nd_opt(); while (opt != null && argsList.size() != 0) { interpreter.assign(recv, opt.nd_head(), (RubyObject)argsList.get(0), true); argsList.shift(1); opt = opt.nd_next(); } interpreter.eval(recv, opt); } if (node.nd_rest() >= 0) { RubyArray array = null; if (argsList.size() > 0) { array = RubyArray.m_newArray(getRuby(), argsList); } else { array = RubyArray.m_newArray(getRuby(), 0); } localVarsList.set(node.nd_rest(), array); } } } result = interpreter.eval(recv, body); } catch (ReturnException rExcptn) { } RubyVarmap.pop(getRuby()); getRuby().getRubyScope().pop(); getRuby().setRubyCRef(savedCref); break; } default: { System.out.println("Not implemented yet (method call): " + id.toName() + ", node_type:" + body.nd_type()); } } */ getRuby().getRubyFrame().pop(); getRuby().getIter().pop(); return result ; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/f629550c5947df9c1dbe414645f3dc76bcb70df4/RubyModule.java/buggy/org/jruby/RubyModule.java |
getRuby().getRubyFrame().setLastFunc(id); getRuby().getRubyFrame().setLastClass(noSuper ? null : this); getRuby().getRubyFrame().setSelf(recv); getRuby().getRubyFrame().setArgs(new RubyPointer(args)); RubyObject result = getRuby().getNil(); if (body instanceof CallableNode) { result = ((CallableNode)body).call(getRuby(), recv, id, args, noSuper); } else { System.out.println("{BUG] Not implemented yet (method call): " + id.toName() + ", node_type:" + body.getType()); } /*switch (body.nd_type()) { case NODE_ZSUPER: case NODE_ATTRSET: case NODE_IVAR: { result = body.interpreter.eval(recv, body); break; } case NODE_SCOPE: { NODE savedCref = null; ShiftableList argsList = new ShiftableList(args); ShiftableList localVarsList = null; getRuby().getRubyScope().push(); if (body.nd_rval() != null) { savedCref = getRuby().getRubyCRef(); getRuby().setRubyCRef((NODE)body.nd_rval()); getRuby().getRubyFrame().setCbase(body.nd_rval()); } if (body.nd_tbl() != null) { List tmpList = Collections.nCopies(body.nd_tbl()[0].intValue() + 1, getRuby().getNil()); localVarsList = new ShiftableList(new ArrayList(tmpList)); localVarsList.set(0, body); localVarsList.shift(1); getRuby().getRubyScope().setLocalTbl(body.nd_tbl()); getRuby().getRubyScope().setLocalVars(localVarsList.getList()); } else { localVarsList = getRuby().getRubyScope().getLocalVars(); getRuby().getRubyScope().setLocalVars(null); getRuby().getRubyScope().setLocalTbl(null); } body = body.nd_next(); RubyVarmap.push(getRuby()); try { NODE node = null; int i; if (body.nd_type() == NODE_ARGS) { node = body; body = null; } else if (body.nd_type() == NODE_BLOCK) { node = body.nd_head(); body = body.nd_next(); } if (node != null) { if (node.nd_type() != NODE_ARGS) { } i = node.nd_cnt(); if (i > (args != null ? args.length : 0)) { throw new RubyArgumentException("wrong # of arguments(" + args.length + " for " + i + ")"); } if (node.nd_rest() == -1) { int opt = i; NODE optnode = node.nd_opt(); while (optnode != null) { opt++; optnode = optnode.nd_next(); } if (opt < (args != null ? args.length : 0)) { throw new RubyArgumentException("wrong # of arguments(" + args.length + " for " + opt + ")"); } getRuby().getRubyFrame().setArgs(localVarsList != null ? localVarsList.getList(2) : null); } if (localVarsList != null) { if (i > 0) { localVarsList.shift(2); for (int j = 0; j < i; j++ ) { localVarsList.set(j, argsList.get(j)); } localVarsList.shiftLeft(2); } argsList.shift(i); if (node.nd_opt() != null) { NODE opt = node.nd_opt(); while (opt != null && argsList.size() != 0) { interpreter.assign(recv, opt.nd_head(), (RubyObject)argsList.get(0), true); argsList.shift(1); opt = opt.nd_next(); } interpreter.eval(recv, opt); } if (node.nd_rest() >= 0) { RubyArray array = null; if (argsList.size() > 0) { array = RubyArray.m_newArray(getRuby(), argsList); } else { array = RubyArray.m_newArray(getRuby(), 0); } localVarsList.set(node.nd_rest(), array); } } } result = interpreter.eval(recv, body); } catch (ReturnException rExcptn) { } RubyVarmap.pop(getRuby()); getRuby().getRubyScope().pop(); getRuby().setRubyCRef(savedCref); break; } default: { System.out.println("Not implemented yet (method call): " + id.toName() + ", node_type:" + body.nd_type()); } } */ | RubyObject result = ((CallableNode)body).call(getRuby(), recv, id, args, noSuper); | public RubyObject call0(RubyObject recv, RubyId id, RubyObject[] args, Node body, boolean noSuper) { // ... getRuby().getRubyFrame().push(); // HACK +++ getRuby().getIter().push(RubyIter.ITER_NOT); // HACK --- getRuby().getRubyFrame().setLastFunc(id); getRuby().getRubyFrame().setLastClass(noSuper ? null : this); getRuby().getRubyFrame().setSelf(recv); getRuby().getRubyFrame().setArgs(new RubyPointer(args)); RubyObject result = getRuby().getNil(); if (body instanceof CallableNode) { result = ((CallableNode)body).call(getRuby(), recv, id, args, noSuper); } else { System.out.println("{BUG] Not implemented yet (method call): " + id.toName() + ", node_type:" + body.getType()); } /*switch (body.nd_type()) { case NODE_ZSUPER: case NODE_ATTRSET: case NODE_IVAR: { result = body.interpreter.eval(recv, body); break; } case NODE_SCOPE: { NODE savedCref = null; // VALUE[] localVars = null; ShiftableList argsList = new ShiftableList(args); ShiftableList localVarsList = null; getRuby().getRubyScope().push(); if (body.nd_rval() != null) { savedCref = getRuby().getRubyCRef(); getRuby().setRubyCRef((NODE)body.nd_rval()); getRuby().getRubyFrame().setCbase(body.nd_rval()); } if (body.nd_tbl() != null) { // ? +++ List tmpList = Collections.nCopies(body.nd_tbl()[0].intValue() + 1, getRuby().getNil()); // ? --- localVarsList = new ShiftableList(new ArrayList(tmpList)); localVarsList.set(0, body); localVarsList.shift(1); getRuby().getRubyScope().setLocalTbl(body.nd_tbl()); getRuby().getRubyScope().setLocalVars(localVarsList.getList()); } else { localVarsList = getRuby().getRubyScope().getLocalVars(); getRuby().getRubyScope().setLocalVars(null); getRuby().getRubyScope().setLocalTbl(null); } body = body.nd_next(); RubyVarmap.push(getRuby()); // PUSH_TAG(PROT_FUNC); try { NODE node = null; int i; if (body.nd_type() == NODE_ARGS) { node = body; body = null; } else if (body.nd_type() == NODE_BLOCK) { node = body.nd_head(); body = body.nd_next(); } if (node != null) { if (node.nd_type() != NODE_ARGS) { // rb_bug("no argument-node"); } i = node.nd_cnt(); if (i > (args != null ? args.length : 0)) { throw new RubyArgumentException("wrong # of arguments(" + args.length + " for " + i + ")"); } if (node.nd_rest() == -1) { int opt = i; NODE optnode = node.nd_opt(); while (optnode != null) { opt++; optnode = optnode.nd_next(); } if (opt < (args != null ? args.length : 0)) { throw new RubyArgumentException("wrong # of arguments(" + args.length + " for " + opt + ")"); } getRuby().getRubyFrame().setArgs(localVarsList != null ? localVarsList.getList(2) : null); } if (localVarsList != null) { if (i > 0) { localVarsList.shift(2); for (int j = 0; j < i; j++ ) { localVarsList.set(j, argsList.get(j)); } localVarsList.shiftLeft(2); } argsList.shift(i); if (node.nd_opt() != null) { NODE opt = node.nd_opt(); while (opt != null && argsList.size() != 0) { interpreter.assign(recv, opt.nd_head(), (RubyObject)argsList.get(0), true); argsList.shift(1); opt = opt.nd_next(); } interpreter.eval(recv, opt); } if (node.nd_rest() >= 0) { RubyArray array = null; if (argsList.size() > 0) { array = RubyArray.m_newArray(getRuby(), argsList); } else { array = RubyArray.m_newArray(getRuby(), 0); } localVarsList.set(node.nd_rest(), array); } } } result = interpreter.eval(recv, body); } catch (ReturnException rExcptn) { } RubyVarmap.pop(getRuby()); getRuby().getRubyScope().pop(); getRuby().setRubyCRef(savedCref); break; } default: { System.out.println("Not implemented yet (method call): " + id.toName() + ", node_type:" + body.nd_type()); } } */ getRuby().getRubyFrame().pop(); getRuby().getIter().pop(); return result ; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/f629550c5947df9c1dbe414645f3dc76bcb70df4/RubyModule.java/buggy/org/jruby/RubyModule.java |
RubyMethodCacheEntry.saveEntry(getRuby(), this, id, ent); | public GetMethodBodyResult getMethodBody(RubyId id, int noex) { GetMethodBodyResult result = new GetMethodBodyResult(this, id, noex); MethodNode methodNode = searchMethod(id); if (methodNode == null || methodNode.getBodyNode() == null) { System.out.println("Cant find method \"" + id.toName() + "\" in class " + toName()); RubyMethodCacheEntry.saveEmptyEntry(getRuby(), this, id); return result; } RubyMethodCacheEntry ent = new RubyMethodCacheEntry(this, methodNode.getNoex()); Node body = methodNode.getBodyNode(); if (body instanceof FBodyNode) { FBodyNode fbody = (FBodyNode)body; ent.setMid(id); ent.setOrigin((RubyModule)fbody.getOrigin()); ent.setMid0(fbody.getMId()); ent.setMethod(fbody.getBodyNode()); result.setRecvClass((RubyModule)fbody.getOrigin()); result.setId(fbody.getMId()); body = fbody.getBodyNode(); } else { ent.setMid(id); ent.setMid0(id); ent.setOrigin(methodNode.getMethodOrigin()); ent.setMethod(body); result.setRecvClass(methodNode.getMethodOrigin()); } result.setNoex(ent.getNoex()); result.setBody(body); return result; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/f629550c5947df9c1dbe414645f3dc76bcb70df4/RubyModule.java/buggy/org/jruby/RubyModule.java |
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defineMethod("==", Arity.singleArgument(), "equal"); defineAlias("===", "=="); defineMethod("to_s", Arity.noArguments()); defineMethod("nil?", Arity.noArguments(), "nil_p"); defineMethod("to_a", Arity.noArguments()); defineMethod("hash", Arity.noArguments()); defineMethod("id", Arity.noArguments()); defineAlias("__id__", "id"); defineAlias("object_id", "id"); defineMethod("is_a?", Arity.singleArgument(), "kind_of"); defineAlias("kind_of?", "is_a?"); defineMethod("dup", Arity.noArguments()); defineAlias("eql?", "=="); defineMethod("equal?", Arity.singleArgument(), "same"); defineMethod("type", Arity.noArguments(), "type_deprecated"); defineMethod("class", Arity.noArguments(), "type"); defineMethod("inspect", Arity.noArguments()); defineMethod("=~", Arity.singleArgument(), "match"); defineMethod("clone", Arity.noArguments(), "rbClone"); defineMethod("display", Arity.optional(), "display"); defineMethod("extend", Arity.optional(), "extend"); defineMethod("freeze", Arity.noArguments()); defineMethod("frozen?", Arity.noArguments(), "frozen"); defineMethod("initialize_copy", Arity.singleArgument(), "initialize_copy"); defineMethod("instance_eval", Arity.optional()); defineMethod("instance_of?", Arity.singleArgument(), "instance_of"); defineMethod("instance_variables", Arity.noArguments()); defineMethod("instance_variable_get", Arity.singleArgument()); defineMethod("instance_variable_set", Arity.twoArguments()); defineMethod("method", Arity.singleArgument(), "method"); defineMethod("methods", Arity.optional()); defineMethod("private_methods", Arity.noArguments()); defineMethod("protected_methods", Arity.noArguments()); defineMethod("public_methods", Arity.optional()); defineMethod("respond_to?", Arity.optional(), "respond_to"); defineMethod("send", Arity.optional()); defineAlias("__send__", "send"); defineMethod("singleton_methods", Arity.noArguments()); defineMethod("taint", Arity.noArguments()); defineMethod("tainted?", Arity.noArguments(), "tainted"); defineMethod("untaint", Arity.noArguments()); | protected void initializeClass() { defineMethod("==", Arity.singleArgument(), "equal"); defineAlias("===", "=="); defineMethod("to_s", Arity.noArguments()); defineMethod("nil?", Arity.noArguments(), "nil_p"); defineMethod("to_a", Arity.noArguments()); defineMethod("hash", Arity.noArguments()); defineMethod("id", Arity.noArguments()); defineAlias("__id__", "id"); defineAlias("object_id", "id"); defineMethod("is_a?", Arity.singleArgument(), "kind_of"); defineAlias("kind_of?", "is_a?"); defineMethod("dup", Arity.noArguments()); defineAlias("eql?", "=="); defineMethod("equal?", Arity.singleArgument(), "same"); defineMethod("type", Arity.noArguments(), "type_deprecated"); defineMethod("class", Arity.noArguments(), "type"); defineMethod("inspect", Arity.noArguments()); defineMethod("=~", Arity.singleArgument(), "match"); defineMethod("clone", Arity.noArguments(), "rbClone"); defineMethod("display", Arity.optional(), "display"); defineMethod("extend", Arity.optional(), "extend"); defineMethod("freeze", Arity.noArguments()); defineMethod("frozen?", Arity.noArguments(), "frozen"); defineMethod("initialize_copy", Arity.singleArgument(), "initialize_copy"); defineMethod("instance_eval", Arity.optional()); defineMethod("instance_of?", Arity.singleArgument(), "instance_of"); defineMethod("instance_variables", Arity.noArguments()); defineMethod("instance_variable_get", Arity.singleArgument()); defineMethod("instance_variable_set", Arity.twoArguments()); defineMethod("method", Arity.singleArgument(), "method"); defineMethod("methods", Arity.optional()); defineMethod("private_methods", Arity.noArguments()); defineMethod("protected_methods", Arity.noArguments()); defineMethod("public_methods", Arity.optional()); defineMethod("respond_to?", Arity.optional(), "respond_to"); defineMethod("send", Arity.optional()); defineAlias("__send__", "send"); defineMethod("singleton_methods", Arity.noArguments()); defineMethod("taint", Arity.noArguments()); defineMethod("tainted?", Arity.noArguments(), "tainted"); defineMethod("untaint", Arity.noArguments()); definePrivateMethod("initialize", Arity.optional()); definePrivateMethod("inherited", Arity.singleArgument()); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/5e2d21a7295d01b2d891cfc8c8e67af99a3d858e/ObjectMetaClass.java/buggy/src/org/jruby/runtime/builtin/meta/ObjectMetaClass.java |
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