Update README.md
Browse files
README.md
CHANGED
@@ -9,6 +9,8 @@ configs:
|
|
9 |
data_files: "gene_info.parquet"
|
10 |
- config_name: generated_descriptions_gpt4o_mini_combined
|
11 |
data_files: "generated_descriptions_gpt4o_mini_combined.parquet"
|
|
|
|
|
12 |
---
|
13 |
|
14 |
---
|
@@ -35,7 +37,7 @@ The dataset contains four main components:
|
|
35 |
1. NCBI Summary - Contains gene descriptions from NCBI
|
36 |
2. NCBI-UniProt Summary - Contains combined gene descriptions from NCBI and UniProt
|
37 |
3. Gene Info Table - Contains contains a mapping between gene_id, ensmble_id and gene functional annotation
|
38 |
-
4. Generated Descriptions (
|
39 |
- Contains AI-generated gene descriptions
|
40 |
- Model: GPT-4o-mini
|
41 |
- Factors:
|
@@ -43,7 +45,14 @@ The dataset contains four main components:
|
|
43 |
b. Aging related information
|
44 |
c. Drug interactions
|
45 |
d. Pathways and biological processes
|
46 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
47 |
## Source Data:
|
48 |
Some of the data was sourced from the following sources upstream of the GenePT project:
|
49 |
- NCBI Gene Database
|
|
|
9 |
data_files: "gene_info.parquet"
|
10 |
- config_name: generated_descriptions_gpt4o_mini_combined
|
11 |
data_files: "generated_descriptions_gpt4o_mini_combined.parquet"
|
12 |
+
- config_name: generated_descriptions_gpt4o_mini_cell_type_drugs_pathways
|
13 |
+
data_files: "generated_descriptions_gpt4o_mini_cell_type_drugs_pathways.parquet"
|
14 |
---
|
15 |
|
16 |
---
|
|
|
37 |
1. NCBI Summary - Contains gene descriptions from NCBI
|
38 |
2. NCBI-UniProt Summary - Contains combined gene descriptions from NCBI and UniProt
|
39 |
3. Gene Info Table - Contains contains a mapping between gene_id, ensmble_id and gene functional annotation
|
40 |
+
4. Generated Descriptions (Aging)
|
41 |
- Contains AI-generated gene descriptions
|
42 |
- Model: GPT-4o-mini
|
43 |
- Factors:
|
|
|
45 |
b. Aging related information
|
46 |
c. Drug interactions
|
47 |
d. Pathways and biological processes
|
48 |
+
5. Generated Descriptions (Cell Type)
|
49 |
+
- Contains AI-generated gene descriptions
|
50 |
+
- Model: GPT-4o-mini
|
51 |
+
- Factors:
|
52 |
+
a. Associated genes
|
53 |
+
b. Cell type
|
54 |
+
c. Drug interactions
|
55 |
+
d. Pathways and biological processes
|
56 |
## Source Data:
|
57 |
Some of the data was sourced from the following sources upstream of the GenePT project:
|
58 |
- NCBI Gene Database
|