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import setuptools |
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with open("README.md", "r", encoding="utf-8") as fh: |
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long_description = fh.read() |
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about = {} |
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with open("pathml/_version.py", "r", encoding="utf-8") as f: |
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exec(f.read(), about) |
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version = about["__version__"] |
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dependency_links = ["https://download.pytorch.org/whl/cu116"] |
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setuptools.setup( |
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name="pathml", |
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version=version, |
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author="Jacob Rosenthal, Ryan Carelli et al.", |
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author_email="[email protected]", |
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description="Tools for computational pathology", |
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long_description=long_description, |
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long_description_content_type="text/markdown", |
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packages=setuptools.find_packages(), |
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project_urls={ |
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"Documentation": "https://pathml.readthedocs.io/en/stable", |
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"Source Code": "https://github.com/Dana-Farber-AIOS/pathml", |
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}, |
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dependency_links=dependency_links, |
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install_requires=[ |
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"numpy==1.23.5", |
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"pandas<=2.1.4", |
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"scipy<=1.11.4", |
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"scikit-image<=0.22.0", |
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"statsmodels", |
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"matplotlib<=3.8.2", |
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"openslide-python==1.3.1", |
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"pydicom==2.4.4", |
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"h5py==3.10.0", |
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"scikit-learn", |
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"dask[distributed]", |
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"anndata>=0.7.6", |
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"scanpy==1.9.6", |
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"torch==1.13.1", |
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"opencv-contrib-python==4.8.1.78", |
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"python-bioformats==4.0.7", |
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"python-javabridge==4.0.3", |
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"loguru==0.7.2", |
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"networkx<=3.2.1", |
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"torch-geometric==2.3.1", |
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"onnx==1.15.0", |
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"onnxruntime==1.16.3", |
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"jpype1==1.4.1", |
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"tqdm==4.66.1", |
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"anndata<=0.10.3", |
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"pydicom==2.4.4", |
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], |
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classifiers=[ |
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"License :: OSI Approved :: GNU General Public License v2 (GPLv2)", |
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"Programming Language :: Python :: 3", |
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"Programming Language :: Python :: 3.8", |
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"Operating System :: OS Independent", |
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"Development Status :: 4 - Beta", |
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"Intended Audience :: Science/Research", |
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"Framework :: Sphinx", |
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"Framework :: Pytest", |
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"Topic :: Scientific/Engineering :: Artificial Intelligence", |
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"Topic :: Scientific/Engineering :: Bio-Informatics", |
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"Topic :: Scientific/Engineering :: Image Processing", |
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"Topic :: Scientific/Engineering :: Image Recognition", |
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"Topic :: Scientific/Engineering :: Medical Science Apps.", |
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"Topic :: Software Development :: Libraries :: Python Modules", |
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], |
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) |
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