from unittest.mock import MagicMock, mock_open, patch import pytest from pathml.datasets.deepfocus import DeepFocusDataModule # Mocking the dataset for integrity check @pytest.fixture def mock_dataset(tmp_path): dataset_path = tmp_path / "outoffocus2017_patches5Classification.h5" dataset_path.write_bytes(b"fake content to simulate an actual file") return tmp_path @patch("pathml.datasets.deepfocus.download_from_url") @patch("os.path.exists", return_value=True) @patch("builtins.open", new_callable=mock_open, read_data=b"fake content") @patch("hashlib.md5") def test_deepfocusdatamodule_init_with_correct_checksum( mock_md5, mock_file, mock_exists, mock_download, mock_dataset ): # Setup mock to return a specific checksum mock_md5.return_value.hexdigest.return_value = "ba7b4a652c2a5a7079b216edd267b628" # Initialize the data module dm = DeepFocusDataModule(str(mock_dataset), download=False) # Ensure download was not triggered mock_download.assert_not_called() # Check if the integrity check passes assert dm._check_integrity() # Test for initialization failure due to incorrect checksum @patch("pathml.datasets.deepfocus.download_from_url") @patch("os.path.exists", return_value=True) @patch("builtins.open", new_callable=mock_open, read_data=b"incorrect content") @patch("hashlib.md5") def test_deepfocusdatamodule_init_with_incorrect_checksum( mock_md5, mock_file, mock_exists, mock_download, mock_dataset ): # Setup mock to return an incorrect checksum mock_md5.return_value.hexdigest.return_value = "wrongchecksum" # Expect an AssertionError due to integrity check failure with pytest.raises(AssertionError): DeepFocusDataModule(str(mock_dataset), download=False) # Test for automatic download when dataset is missing or fails integrity check @patch("pathml.datasets.deepfocus.download_from_url") @patch("os.path.exists", return_value=False) # Simulate missing file def test_deepfocusdatamodule_auto_download(mock_exists, mock_download, mock_dataset): DeepFocusDataModule(str(mock_dataset), download=True) # Verify that download_from_url was called due to missing dataset mock_download.assert_called_once_with( "https://zenodo.org/record/1134848/files/outoffocus2017_patches5Classification.h5", mock_dataset, ) @patch( "pathml.datasets.deepfocus.DeepFocusDataModule._check_integrity", return_value=True ) def test_get_dataset(mock_check_integrity, mock_dataset): with patch("pathml.datasets.deepfocus.DeepFocusDataset") as mock_deepfocusdataset: dm = DeepFocusDataModule(str(mock_dataset), download=False) # Rest of your test code dm._get_dataset(fold_ix=1) mock_deepfocusdataset.assert_called_once_with( data_dir=mock_dataset, fold_ix=1, transforms=None ) # Reset mock to test another fold index mock_deepfocusdataset.reset_mock() dm._get_dataset(fold_ix=2) mock_deepfocusdataset.assert_called_once_with( data_dir=mock_dataset, fold_ix=2, transforms=None ) @patch( "pathml.datasets.deepfocus.DeepFocusDataModule._check_integrity", return_value=True ) @patch("pathml.datasets.deepfocus.logger.info") def test_download_deepfocus_already_downloaded( mock_logger_info, mock_check_integrity, mock_dataset ): dm = DeepFocusDataModule(str(mock_dataset), download=True) dm._download_deepfocus(dm.data_dir) mock_logger_info.assert_called_with("File already downloaded with correct hash.") # Ensure each mocked dataset returns the correct length for its respective fold @patch( "pathml.datasets.deepfocus.DeepFocusDataModule._check_integrity", return_value=True ) @patch("pathml.datasets.deepfocus.DeepFocusDataset") def test_dataloader_properties( mock_deepfocusdataset, mock_check_integrity, mock_dataset ): # Mock lengths for train, validation, and test datasets respectively mock_deepfocusdataset.side_effect = [ MagicMock(__len__=MagicMock(return_value=163199)), # Training MagicMock(__len__=MagicMock(return_value=20400)), # Validation MagicMock(__len__=MagicMock(return_value=20400)), # Test ] dm = DeepFocusDataModule( str(mock_dataset), download=False, shuffle=True, batch_size=8 ) assert ( len(dm.train_dataloader.dataset) == 163199 ), "Incorrect length for training dataset" assert ( len(dm.valid_dataloader.dataset) == 20400 ), "Incorrect length for validation dataset" assert len(dm.test_dataloader.dataset) == 20400, "Incorrect length for test dataset"