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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 12 new columns ({'km(mM)', 'Commentary[Mutant]', 'Commentary[Cosubstrate]', 'Enzyme', 'km_kcat(mM^-1s^-1)', 'kcat(s^-1)', 'Substrate', 'Organism', 'Reference[Table/Text]', 'ID_gold', 'Commentary[pH]', 'Commentary[Temp]'}) and 18 missing columns ({' Commentary[Mutant] ', ' Unit_Kcat ', 'km_kcat', 'Kcleav', 'kcat', ' Variable_reactant ', ' Commentary[Temp] ', 'Source', ' Unit_Kcleav ', 'Kobs', ' Commentary[Others] ', ' Unit_Km ', ' Ribozyme ', ' Unit_Kcat/Km ', 'km', ' Unit_Kobs ', ' Commentary[pH] ', ' Organism '}).
This happened while the csv dataset builder was generating data using
hf://datasets/jackkuo/LLM-Enzyme-Kinetics-Golden-Benchmark/Golden Benchmark for Enzyme Kinetics_converted.csv (at revision 47192f5bab5578aeb305f148600563298a34535e)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
ID_gold: int64
pubmed_id: int64
Enzyme: string
Organism: string
Substrate: string
km(mM): string
kcat(s^-1): string
km_kcat(mM^-1s^-1): string
Commentary[Temp]: string
Commentary[pH]: string
Commentary[Mutant]: string
Commentary[Cosubstrate]: string
Reference[Table/Text]: string
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1886
to
{' Ribozyme ': Value(dtype='string', id=None), ' Organism ': Value(dtype='string', id=None), ' Variable_reactant ': Value(dtype='string', id=None), 'Kobs': Value(dtype='string', id=None), ' Unit_Kobs ': Value(dtype='string', id=None), 'km': Value(dtype='string', id=None), ' Unit_Km ': Value(dtype='string', id=None), 'kcat': Value(dtype='string', id=None), ' Unit_Kcat ': Value(dtype='string', id=None), 'km_kcat': Value(dtype='string', id=None), ' Unit_Kcat/Km ': Value(dtype='string', id=None), 'Kcleav': Value(dtype='string', id=None), ' Unit_Kcleav ': Value(dtype='string', id=None), ' Commentary[Temp] ': Value(dtype='string', id=None), ' Commentary[pH] ': Value(dtype='string', id=None), ' Commentary[Mutant] ': Value(dtype='string', id=None), ' Commentary[Others] ': Value(dtype='string', id=None), 'pubmed_id': Value(dtype='string', id=None), 'Source': Value(dtype='string', id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1438, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1050, in convert_to_parquet
builder.download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 924, in download_and_prepare
self._download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1000, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 12 new columns ({'km(mM)', 'Commentary[Mutant]', 'Commentary[Cosubstrate]', 'Enzyme', 'km_kcat(mM^-1s^-1)', 'kcat(s^-1)', 'Substrate', 'Organism', 'Reference[Table/Text]', 'ID_gold', 'Commentary[pH]', 'Commentary[Temp]'}) and 18 missing columns ({' Commentary[Mutant] ', ' Unit_Kcat ', 'km_kcat', 'Kcleav', 'kcat', ' Variable_reactant ', ' Commentary[Temp] ', 'Source', ' Unit_Kcleav ', 'Kobs', ' Commentary[Others] ', ' Unit_Km ', ' Ribozyme ', ' Unit_Kcat/Km ', 'km', ' Unit_Kobs ', ' Commentary[pH] ', ' Organism '}).
This happened while the csv dataset builder was generating data using
hf://datasets/jackkuo/LLM-Enzyme-Kinetics-Golden-Benchmark/Golden Benchmark for Enzyme Kinetics_converted.csv (at revision 47192f5bab5578aeb305f148600563298a34535e)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
Ribozyme
string | Organism
string | Variable_reactant
string | Kobs
string | Unit_Kobs
string | km
string | Unit_Km
string | kcat
string | Unit_Kcat
string | km_kcat
string | Unit_Kcat/Km
string | Kcleav
string | Unit_Kcleav
string | Commentary[Temp]
string | Commentary[pH]
string | Commentary[Mutant]
string | Commentary[Others]
string | pubmed_id
string | Source
string |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Hammerhead | NA | S13 | NA | NA | 38 | nM | 0.4 | min^-1 | 10 | min^-1 µM^-1 | NA | NA | 30°C | 8 | WT | 10 mM MgCl2 | 1280808 | Table |
Hammerhead | NA | S13 | NA | NA | 59 | nM | 8.9 | min^-1 | 150 | min^-1 µM^-1 | NA | NA | 30°C | 8 | DNA-armed | 10 mM MgCl2 | 1280808 | Table |
rz.GH | NA | rGAG | NA | NA | 38 | nM | 0.019 | /min | NA | NA | NA | NA | 55°C | 8.5 | WT | NA | 1408757 | Table |
rz.GH | NA | dGAGrUCA | NA | NA | 56 | nM | 0.087 | /min | NA | NA | NA | NA | 55°C | 8.5 | WT | NA | 1408757 | Table |
rz.DRD | NA | rGAG | NA | NA | 64 | nM | 0.019 | /min | NA | NA | NA | NA | 55°C | 8.5 | DNA in base-pairing sequences and stem-loop II | NA | 1408757 | Table |
rz.DRD | NA | dGAGrUCA | NA | NA | 196 | nM | 0.024 | /min | NA | NA | NA | NA | 55°C | 8.5 | DNA in base-pairing sequences and stem-loop II | NA | 1408757 | Table |
rz.DRD | NA | dGAGrUCA | NA | NA | 48 | nM | 0.012 | /min | NA | NA | NA | NA | 50°C | 8.5 | DNA in base-pairing sequences and stem-loop II | NA | 1408757 | Table |
rz.RLoop | NA | rGAG | NA | NA | 64 | nM | 0.126 | /min | NA | NA | NA | NA | 55°C | 8.5 | DNA in base-pairing sequences only | NA | 1408757 | Table |
rz.RLoop | NA | dGAGrUCA | NA | NA | 91 | nM | 0.108 | /min | NA | NA | NA | NA | 55°C | 8.5 | DNA in base-pairing sequences only | NA | 1408757 | Table |
rz.GH | NA | rGAG | NA | NA | NA | NA | 0.02 | /min | NA | NA | NA | NA | 55°C | 8.5 | WT | NA | 1408757 | Text |
RZ1 | NA | α-lac mRNA | NA | NA | 0.17 | µM | 0.3 | mol/min | 1.8 | µM^-1min^-1 | NA | NA | 37°C | 8 | WT | 20 mM MgCl2 | 1425576 | Table |
RZ2 | NA | α-lac mRNA | NA | NA | 0.27 | µM | 0.4 | mol/min | 1.5 | µM^-1min^-1 | NA | NA | 37°C | 8 | WT | 20 mM MgCl2 | 1425576 | Table |
RZ3 | NA | α-lac mRNA | NA | NA | 0.62 | µM | 1.1 | mol/min | 1.8 | µM^-1min^-1 | NA | NA | 37°C | 8 | WT | 20 mM MgCl2 | 1425576 | Table |
RZ4a | NA | α-lac mRNA | NA | NA | 0.28 | µM | 0.3 | mol/min | 1.1 | µM^-1min^-1 | NA | NA | 37°C | 8 | WT | 20 mM MgCl2 | 1425576 | Table |
RZ4b | NA | α-lac mRNA | NA | NA | 0.28 | µM | 0.5 | mol/min | 1.8 | µM^-1min^-1 | NA | NA | 37°C | 8 | WT | 20 mM MgCl2 | 1425576 | Table |
RZ5 | NA | α-lac mRNA | NA | NA | 0.41 | µM | 1.5 | mol/min | 3.7 | µM^-1min^-1 | NA | NA | 37°C | 8 | WT | 20 mM MgCl2 | 1425576 | Table |
Hammerhead | NA | NA | NA | NA | 0.88 | µM | 0.94 | min^-1 | 1100 × 10^-3 | µM^-1min^-1 | NA | NA | 55°C | 8 | WT | 10 mM Mg^2+ | 1570323 | Table |
Hammerhead | NA | NA | NA | NA | 4.2 | µM | 0.014 | min^-1 | 3.3 × 10^-3 | µM^-1min^-1 | NA | NA | 55°C | 8 | I^10 | 10 mM Mg^2+ | 1570323 | Table |
Hammerhead | NA | NA | NA | NA | 6.9 | µM | 0.0057 | min^-1 | 0.82 × 10^-3 | µM^-1min^-1 | NA | NA | 55°C | 8 | dG^10 | 10 mM Mg^2+ | 1570323 | Table |
Hammerhead | NA | NA | NA | NA | 13 | µM | 0.048 | min^-1 | 3.5 × 10^-3 | µM^-1min^-1 | NA | NA | 55°C | 8 | dG^13 | 10 mM Mg^2+ | 1570323 | Table |
Hammerhead 6 | NA | NA | NA | NA | 46 | nM | 1.5 | min^-1 | 0.032 | nM^-1·min^-1 | NA | NA | 25°C | 7.5 | NA | 10 mM MgCl2 | 1689847 | Table |
Hammerhead 8 | NA | NA | NA | NA | 41 | nM | 1 | min^-1 | 0.024 | nM^-1·min^-1 | NA | NA | 25°C | 7.5 | NA | 10 mM MgCl2 | 1689847 | Table |
Hammerhead 9 | NA | NA | NA | NA | 160 | nM | 1.5 | min^-1 | 0.0093 | nM^-1·min^-1 | NA | NA | 25°C | 7.5 | NA | 10 mM MgCl2 | 1689847 | Table |
Hammerhead 10 | NA | NA | NA | NA | 2300 | nM | 1 | min^-1 | 0.00044 | nM^-1·min^-1 | NA | NA | 25°C | 7.5 | NA | 10 mM MgCl2 | 1689847 | Table |
Hammerhead | NA | NA | NA | NA | 154 | nM | 2.31 | min^-1 | 15 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | WT | 10 mM MgCl2 | 1736306 | Table |
Hammerhead | NA | NA | NA | NA | 41 | nM | 0.006 | min^-1 | 0.1 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-dG10 | 10 mM MgCl2 | 1736306 | Table |
Hammerhead | NA | NA | NA | NA | 308 | nM | 0.04 | min^-1 | 0.2 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-FG10 | 10 mM MgCl2 | 1736306 | Table |
Hammerhead | NA | NA | NA | NA | 153 | nM | 0.8 | min^-1 | 1.2 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-NG10 | 10 mM MgCl2 | 1736306 | Table |
Hammerhead | NA | NA | NA | NA | 51 | nM | 0.005 | min^-1 | 0.1 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-dG13 | 10 mM MgCl2 | 1736306 | Table |
Hammerhead | NA | NA | NA | NA | 227 | nM | 0.008 | min^-1 | 0.04 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-FG13 | 10 mM MgCl2 | 1736306 | Table |
Hammerhead | NA | NA | NA | NA | 190 | nM | 0.16 | min^-1 | 0.8 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-NG13 | 10 mM MgCl2 | 1736306 | Table |
Hammerhead | NA | NA | NA | NA | 158 | nM | 3.29 | min^-1 | 20.8 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-dG19 | 10 mM MgCl2 | 1736306 | Table |
Hammerhead | NA | NA | NA | NA | 176 | nM | 2.8 | min^-1 | 15.9 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-FG19 | 10 mM MgCl2 | 1736306 | Table |
Hammerhead | NA | NA | NA | NA | 95 | nM | 1.21 | min^-1 | 12.7 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-NG19 | 10 mM MgCl2 | 1736306 | Table |
Hammerhead | NA | NA | NA | NA | 87 | nM | 1.3 | min^-1 | 14.9 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-dG24 | 10 mM MgCl2 | 1736306 | Table |
Hammerhead | NA | NA | NA | NA | 116 | nM | 2.8 | min^-1 | 24 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-FG24 | 10 mM MgCl2 | 1736306 | Table |
Hammerhead | NA | NA | NA | NA | 66 | nM | 0.83 | min^-1 | 12.6 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-NG24 | 10 mM MgCl2 | 1736306 | Table |
Hammerhead | NA | NA | NA | NA | 242 | nM | 4.78 | min^-1 | 19.8 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-dG27 | 10 mM MgCl2 | 1736306 | Table |
Hammerhead | NA | NA | NA | NA | 210 | nM | 0.3 | min^-1 | 1.4 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-FG27 | 10 mM MgCl2 | 1736306 | Table |
Hammerhead | NA | NA | NA | NA | 136 | nM | 0.92 | min^-1 | 6.8 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-NG27 | 10 mM MgCl2 | 1736306 | Table |
NS83 | Tobacco ringspot virus satellite RNA | YOKS501 | NA | NA | 0.025 | µM | 0.033 | min^-1 | 1.32 | µM^-1min^-1 | NA | NA | 37°C | 7.6 | NA | 12 mM MgCl2, 2 mM spermidine | 1762907 | Table |
NS80 | Tobacco ringspot virus satellite RNA | YOKS403 | NA | NA | 0.023 | µM | 0.008 | min^-1 | 0.33 | µM^-1min^-1 | NA | NA | 37°C | 7.6 | NA | 12 mM MgCl2, 2 mM spermidine | 1762907 | Table |
(-)sTRSV | Tobacco ringspot virus satellite RNA | NA | NA | NA | 0.03 | µM | 2.1 | min^-1 | 70 | µM^-1min^-1 | NA | NA | NA | NA | WT | NA | 1762907 | Table |
Hammerhead | NA | NA | NA | NA | 0.62 | µM | 0.5 | min^-1 | 0.81 | µM^-1min^-1 | NA | NA | 55°C | NA | NA | NA | 1762907 | Multisource |
Hammerhead Ribozyme | NA | NA | NA | NA | 220 | nM | 41 | min^-1 | 186 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E_unmodified | Mn^2+ | 1911762 | Table |
Hammerhead Ribozyme | NA | NA | NA | NA | 217 | nM | 2.8 | min^-1 | 13 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E_unmodified | Mg^2+ | 1911762 | Table |
Hammerhead Ribozyme | NA | NA | NA | NA | 276 | nM | 0.2 | min^-1 | 1 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-FA_total | Mn^2+ | 1911762 | Table |
Hammerhead Ribozyme | NA | NA | NA | NA | 107 | nM | 0.7 | min^-1 | 7 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-FA_22,28-30 | Mn^2+ | 1911762 | Table |
Hammerhead Ribozyme | NA | NA | NA | NA | 187 | nM | 10 | min^-1 | 53 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-FA_11,14 | Mn^2+ | 1911762 | Table |
Hammerhead Ribozyme | NA | NA | NA | NA | 269 | nM | 38 | min^-1 | 140 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-FA_14 | Mn^2+ | 1911762 | Table |
Hammerhead Ribozyme | NA | NA | NA | NA | 321 | nM | 4 | min^-1 | 12 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-FA_14 | Mg^2+ | 1911762 | Table |
Hammerhead Ribozyme | NA | NA | NA | NA | 243 | nM | 22 | min^-1 | 90 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-FA_28 | Mn^2+ | 1911762 | Table |
Hammerhead Ribozyme | NA | NA | NA | NA | 187 | nM | 16 | min^-1 | 86 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-FA_29 | Mn^2+ | 1911762 | Table |
Hammerhead Ribozyme | NA | NA | NA | NA | 91 | nM | 4 | min^-1 | 44 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-FA_30 | Mn^2+ | 1911762 | Table |
Hammerhead Ribozyme | NA | NA | NA | NA | 157 | nM | 0.6 | min^-1 | 4 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-dA_total | Mn^2+ | 1911762 | Table |
Hammerhead Ribozyme | NA | NA | NA | NA | 133 | nM | 8 | min^-1 | 57 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-dA_11,14 | Mn^2+ | 1911762 | Table |
Hammerhead Ribozyme | NA | NA | NA | NA | 264 | nM | 21 | min^-1 | 79 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-dA_14 | Mn^2+ | 1911762 | Table |
Hammerhead Ribozyme | NA | NA | NA | NA | 168 | nM | 14 | min^-1 | 86 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-dA_28 | Mn^2+ | 1911762 | Table |
Hammerhead Ribozyme | NA | NA | NA | NA | 179 | nM | 20 | min^-1 | 114 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-dA_29 | Mn^2+ | 1911762 | Table |
Hammerhead Ribozyme | NA | NA | NA | NA | 58 | nM | 5 | min^-1 | 89 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E-dA_30 | Mn^2+ | 1911762 | Table |
Hammerhead Ribozyme | NA | NA | NA | NA | 178 | nM | 22 | min^-1 | 120 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E2_unmodified | Mn^2+ | 1911762 | Table |
Hammerhead Ribozyme | NA | NA | NA | NA | 184 | nM | 25 | min^-1 | 136 | µM^-1·min^-1 | NA | NA | 25°C | 7.5 | E2-FA_20-22 | Mn^2+ | 1911762 | Table |
Hammerhead | Lucerne transient streak virus | S | NA | NA | 1.3 | µM | 0.5 | min^-1 | NA | NA | NA | NA | 50°C | 8.5 | WT | 20 mM MgCl2, S concentration 0.05-0.6 µM | 2646593 | Table |
Hammerhead | minus avocado sunbloth viroid | S | NA | NA | 0.63 | µM | 0.5 | min^-1 | NA | NA | NA | NA | 50°C | 8.5 | WT | 20 mM MgCl2 | 2646593 | Table |
Hammerhead | Lucerne transient streak virus | S | NA | NA | 7.5 | µM | NA | NA | NA | NA | NA | NA | 50°C | 8.5 | WT | 20 mM MgCl2, S concentration >0.6 µM | 2646593 | Text |
Tetrahymena IVS | Tetrahymena thermophila | 32P-labeled RNA | 0.63 | min^-1 | 25 | µM | 0.8 | min^-1 | 32x10^3 | M^-1·min^-1 | NA | NA | 30°C | 7.5 | WT | 200 mM NaCl, 6 mM MgCl2 | 2684642 | Multisource |
Tetrahymena IVS | Tetrahymena thermophila | 32P-labeled RNA | 0.14 | min^-1 | 41 | µM | 0.27 | min^-1 | 6.6x10^3 | M^-1·min^-1 | NA | NA | 30°C | 7.5 | C109G | 200 mM NaCl, 6 mM MgCl2 | 2684642 | Multisource |
Tetrahymena IVS | Tetrahymena thermophila | 32P-labeled RNA | 0.0027 | min^-1 | 120 | µM | 0.0072 | min^-1 | 0.06x10^3 | M^-1·min^-1 | NA | NA | 30°C | 7.5 | G212C | 200 mM NaCl, 6 mM MgCl2 | 2684642 | Multisource |
Tetrahymena IVS | Tetrahymena thermophila | 32P-labeled RNA | 0.0071 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 30°C | 7.5 | C109G:G212C | 200 mM NaCl, 6 mM MgCl2 | 2684642 | Table |
Tetrahymena IVS | Tetrahymena thermophila | 32P-labeled RNA | 0.047 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 30°C | 7.5 | G212A | 200 mM NaCl, 6 mM MgCl2 | 2684642 | Table |
Tetrahymena IVS | Tetrahymena thermophila | 32P-labeled RNA | 0.12 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 30°C | 7.5 | C211G | 200 mM NaCl, 6 mM MgCl2 | 2684642 | Table |
Tetrahymena IVS | Tetrahymena thermophila | 32P-labeled RNA | 0.047 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 30°C | 7.5 | ∆A210 | 200 mM NaCl, 6 mM MgCl2 | 2684642 | Table |
Tetrahymena IVS | Tetrahymena thermophila | 32P-labeled RNA | 0.002 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 30°C | 7.5 | C109G:C211G | 200 mM NaCl, 6 mM MgCl2 | 2684642 | Table |
Tetrahymena ribozyme | Tetrahymena thermophila | 32P-labeled RNA | 0.48 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 42°C | 7.5 | G212C | 200 mM NaCl, 10 mM MgCl2 | 2684642 | Text |
Hammerhead | NA | NA | NA | NA | 0.8 | µM | 0.29 | min^-1 | 0.36 | min^-1 µM^-1 | NA | NA | 37°C | 7.9 | WT | 10 mM Mg^2+ | 7487885 | Table |
Hammerhead | NA | NA | NA | NA | 0.5 | µM | 0.04 | min^-1 | 0.08 | min^-1 µM^-1 | NA | NA | 37°C | 7.9 | ^4H^C_3 | 10 mM Mg^2+ | 7487885 | Table |
Hammerhead | NA | NA | NA | NA | 2.5 | µM | 0.046 | min^-1 | 0.019 | min^-1 µM^-1 | NA | NA | 37°C | 7.9 | ^4H^C_4 | 10 mM Mg^2+ | 7487885 | Table |
Hammerhead | NA | NA | NA | NA | 0.7 | µM | 0.096 | min^-1 | 0.14 | min^-1 µM^-1 | NA | NA | 37°C | 7.9 | ^4S^U_4 | 10 mM Mg^2+ | 7487885 | Table |
Hammerhead | NA | NA | NA | NA | 0.7 | µM | 0.2 | min^-1 | 0.27 | min^-1 µM^-1 | NA | NA | 37°C | 7.9 | ^4H^C_7 | 10 mM Mg^2+ | 7487885 | Table |
Hammerhead | NA | NA | NA | NA | 1 | µM | 0.19 | min^-1 | 0.19 | min^-1 µM^-1 | NA | NA | 37°C | 7.9 | ^4S^U_16.1 | 10 mM Mg^2+ | 7487885 | Table |
Hammerhead | NA | NA | NA | NA | 2.3 | µM | 0.083 | min^-1 | 0.037 | min^-1 µM^-1 | NA | NA | 37°C | 7.9 | ^4H^C_17 | 10 mM Mg^2+ | 7487885 | Table |
Hairpin | Tobacco ringspot virus | sTRSV-C8A | NA | NA | 2500 | nM | 0.038 | min^-1 | 2 | 10^4 M^-1 min^-1 | NA | NA | 37°C | 7.5 | GUA | 12 mM MgCl2, 2 mM spermidine | 7495810 | Table |
Hairpin | Tobacco ringspot virus | sTRSV | NA | NA | 96 | nM | 0.36 | min^-1 | 360 | 10^4 M^-1 min^-1 | NA | NA | 37°C | 7.5 | GUC | 12 mM MgCl2, 2 mM spermidine | 7495810 | Table |
Hairpin | Tobacco ringspot virus | sTRSV-C8G | NA | NA | 540 | nM | 0.01 | min^-1 | 2 | 10^4 M^-1 min^-1 | NA | NA | 37°C | 7.5 | GUG | 12 mM MgCl2, 2 mM spermidine | 7495810 | Table |
Hairpin | Tobacco ringspot virus | sTRSV-C8U | NA | NA | 390 | nM | 0.045 | min^-1 | 12 | 10^4 M^-1 min^-1 | NA | NA | 37°C | 7.5 | GUU | 12 mM MgCl2, 2 mM spermidine | 7495810 | Table |
Hairpin | Chicory yellow mottle virus | sCYMV1 | NA | NA | 400 | nM | 0.32 | min^-1 | 80 | 10^4 M^-1 min^-1 | NA | NA | 37°C | 7.5 | GUA | 12 mM MgCl2, 2 mM spermidine | 7495810 | Table |
Hairpin | Chicory yellow mottle virus | sCYMV1-A8C | NA | NA | 1500 | nM | 0.14 | min^-1 | 9 | 10^4 M^-1 min^-1 | NA | NA | 37°C | 7.5 | GUC | 12 mM MgCl2, 2 mM spermidine | 7495810 | Table |
Hairpin | Chicory yellow mottle virus | sCYMV1-A8G | NA | NA | >6500 | nM | NA | NA | NA | NA | NA | NA | 37°C | 7.5 | GUG | 12 mM MgCl2, 2 mM spermidine | 7495810 | Table |
Hairpin | Chicory yellow mottle virus | sCYMV1-A8U | NA | NA | >10000 | nM | NA | NA | NA | NA | NA | NA | 37°C | 7.5 | GUU | 12 mM MgCl2, 2 mM spermidine | 7495810 | Table |
Hairpin | Chicory yellow mottle virus | sArMV | NA | NA | 1400 | nM | 0.19 | min^-1 | 14 | 10^4 M^-1 min^-1 | NA | NA | 37°C | 7.5 | GUA | 12 mM MgCl2, 2 mM spermidine | 7495810 | Table |
Hairpin | Arabis mosaic virus | sArMV-A1C | NA | NA | 880 | nM | 0.26 | min^-1 | 30 | 10^4 M^-1 min^-1 | NA | NA | 37°C | 7.5 | GUA | 12 mM MgCl2, 2 mM spermidine | 7495810 | Table |
Hairpin | Arabis mosaic virus | sArMV-A1C-A8C | NA | NA | 5400 | nM | 0.22 | min^-1 | 4 | 10^4 M^-1 min^-1 | NA | NA | 37°C | 7.5 | GUC | 12 mM MgCl2, 2 mM spermidine | 7495810 | Table |
Hairpin | Arabis mosaic virus | sArMV-A1C-A8G | NA | NA | 1700 | nM | 0.26 | min^-1 | 15 | 10^4 M^-1 min^-1 | NA | NA | 37°C | 7.5 | GUG | 12 mM MgCl2, 2 mM spermidine | 7495810 | Table |
Hairpin | Arabis mosaic virus | sArMV-A1C-A8U | NA | NA | 3000 | nM | 0.4 | min^-1 | 13 | 10^4 M^-1 min^-1 | NA | NA | 37°C | 7.5 | GUU | 12 mM MgCl2, 2 mM spermidine | 7495810 | Table |
Hairpin | Arabis mosaic virus | sArMV | NA | NA | 2600 | nM | 0.29 | min^-1 | 11 | 10^4 M^-1 min^-1 | NA | NA | 37°C | 7.5 | GUA | 12 mM MgCl2, 2 mM spermidine | 7495810 | Table |
R32 | NA | all-RNA substrat | 0.26 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | 7 | WT | 25 mM CoCl2 | 7506830 | Table |
DRD32 | NA | all-RNA substrat | 0.53 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | 7 | Chimeric DNA/RNA | 25 mM CoCl2 | 7506830 | Table |
R32 | NA | all-RNA substrat | 0.58 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | 7 | WT | 25 mM MgCl2 | 7506830 | Table |
DRD32 | NA | all-RNA substrat | 1.5 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | 7 | Chimeric DNA/RNA | 25 mM MgCl2 | 7506830 | Table |
R32 | NA | all-RNA substrat | 0.61 | min^-1 | NA | NA | NA | NA | NA | NA | NA | NA | 37°C | 7 | WT | 25 mM MgSO4 | 7506830 | Table |
End of preview.
Subsets and Splits