
----------------------------------
## mrsiproc/0.1.0 ##

Includes the following:  
##### -- OS: Ubuntu 20.04 (Built from fsl neurodocker)
##### -- Minc 						(Version 1.9.15)
##### -- MATLAB Runtime		(Version R2021b)
##### -- HD-BET           (Version 1.0)
##### -- LCModel 					(Version 6.3.1)
##### -- dcm2niix
##### -- Python           (Version 3.11.4)
##### -- Julia            (Version 1.9.3)


Overview
--------------------------------------------
The MRSI reconstruction algorithms and scripts were created by the Wolfgang Bogner group.

To run applications outside of this container
---------------------------------------------
  ml mrsiproc/0.1.0


Run MRSI scripts
-----------------------------------------
```bash
bash Part1_ProcessMRSI.sh
bash Part2_EvaluateMRSI.sh
```

Update MRSI scripts version to newest github version
-----------------------------------------
```bash
bash update_mrsi.sh
```

Citation
--------
  
  see individual Neurodesk containers for abovementioned software.

----------------------------------
