# This file contains the order and numbering for all sections in the book.
# Each entry has the following schema:
#
# - title: mytitle   # Title of chapter or section
# - file: /myurl  # URL of section relative to the /content/ folder.
#   sections:  # Contains a list of more entries that make up the chapter's sections
#   expand_sections: true  # if you'd like the sections of this chapter to always
#     be expanded in the sidebar.

format: jb-book
root: intro

parts:
  - caption: "Structural Imaging"
    chapters:
    # A chapter w/ a collection of sections beneath it
      - file: structural_imaging/nipype_module_example
      - file: structural_imaging/qsmxt_example
      - file: structural_imaging/sct_toolbox_example
      - file: structural_imaging/freesurfer_example
      - file: structural_imaging/brain_extraction_different_tools

  - caption: "Functional Imaging"
    chapters:
      - file: functional_imaging/nipype_fsl_all_levels_flanker
      - file: functional_imaging/fmriprep_example
      - file: functional_imaging/first_and_second_level_spm
      - file: functional_imaging/intro_to_preprocessing

  - caption: "Workflow"
    chapters:
      - file: workflows/Nipype_on_NeuroDesk_RISE
      - file: workflows/RISE_slideshow
