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// Copyright (C) 2016 University of Dundee & Open Microscopy Environment.
// All rights reserved.
// This program is free software: you can redistribute it and/or modify
// it under the terms of the GNU Affero General Public License as
// published by the Free Software Foundation, either version 3 of the
// License, or (at your option) any later version.
// This program is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU Affero General Public License for more details.
// You should have received a copy of the GNU Affero General Public License
// along with this program. If not, see <http://www.gnu.org/licenses/>.
var FileAnnsPane = function FileAnnsPane($element, opts) {
var $header = $element.children('h1'),
$body = $element.children('div'),
$fileanns_container = $("#fileanns_container"),
objects = opts.selected;
var self = this;
var tmplText = $('#fileanns_template').html();
var filesTempl = _.template(tmplText);
var initEvents = (function initEvents() {
$header.on('click', function(){
$header.toggleClass('closed');
$body.slideToggle();
var expanded = !$header.hasClass('closed');
OME.setPaneExpanded('files', expanded);
if (expanded && $fileanns_container.is(":empty")) {
this.render();
}
}.bind(this));
}).bind(this);
// set-up the attachment selection form to use AJAX. (requires jquery.form.js plugin)
if ($("#choose_attachments_form").length === 0) {
$("<form id='choose_attachments_form' title='Choose attachments' " +
"action='" + WEBCLIENT.URLS.webindex + "annotate_file/' method='post'></form>")
.hide().appendTo('body');
}
$('#choose_attachments_form').ajaxForm({
beforeSubmit: function(data) {
$("#batch_attachments_form").dialog( "close" );
$("#fileann_spinner").show();
},
success: function() {
$("#fileann_spinner").hide();
// update the list of file annotations and bind actions
self.render();
},
error: function(data){
$("#fileann_spinner").hide();
alert("Upload failed [" + data.status + " " + data.statusText + "]");
}
});
// prepare dialog for choosing file to attach...
$("#choose_attachments_form").dialog({
autoOpen: false,
resizable: false,
height: 420,
width:360,
modal: true,
buttons: {
"Accept": function() {
// simply submit the form (AJAX handling set-up above)
$("#choose_attachments_form").trigger('submit');
$( this ).dialog( "close" );
},
"Cancel": function() {
$( this ).dialog( "close" );
}
}
});
// show dialog for choosing file to attach...
$("#choose_file_anns").on('click', function() {
// show dialog first, then do the AJAX call to load files...
var $attach_form = $( "#choose_attachments_form" );
$attach_form.dialog( "open" );
// load form via AJAX...
var load_url = $(this).attr('href');
$attach_form.html(" <br><img src='" + WEBCLIENT.URLS.static_webgateway + "img/spinner.gif' /> Loading attachments");
$attach_form.load(load_url);
return false;
});
// Show/hide checkboxes beside files to select files for scripts
$(".toolbar input[type=button]", $body).on('click',
OME.toggleFileAnnotationCheckboxes
);
$("#fileanns_container").on(
"change", "li input[type=checkbox]",
OME.fileAnnotationCheckboxChanged
);
$("#fileanns_container").on("click", ".removeFile", function(event) {
var url = $(this).attr('href'),
parents = objects.join("|"); // E.g image-123|image-456
OME.removeItem(event, ".file_ann_wrapper", url, parents);
return false;
});
// delete action (files)
$("#fileanns_container").on("click", ".deleteFile", function(event) {
var url = $(this).attr('href');
OME.deleteItem(event, "file_ann_wrapper", url);
});
var isNotCompanionFile = function isNotCompanionFile(ann) {
return ann.ns !== OMERO.constants.namespaces.NSCOMPANIONFILE;
};
var compareParentName = function(a, b){
if (!a.parent.name || !b.parent.name) {
return 1;
}
return a.parent.name.toLowerCase() > b.parent.name.toLowerCase() ? 1 : -1;
};
this.render = function render() {
if ($fileanns_container.is(":visible")) {
if ($fileanns_container.is(":empty")) {
$fileanns_container.html("Loading attachments...");
}
var request = objects.map(function(o){
return o.replace("-", "=");
});
request = request.join("&");
$.getJSON(WEBCLIENT.URLS.webindex + "api/annotations/?type=file&" + request, function(data){
var checkboxesAreVisible = $(
"#fileanns_container input[type=checkbox]:visible"
).length > 0;
// manipulate data...
// make an object of eid: experimenter
var experimenters = data.experimenters.reduce(function(prev, exp){
prev[exp.id + ""] = exp;
return prev;
}, {});
// Populate experimenters within anns
var anns = data.annotations.map(function(ann){
ann.owner = experimenters[ann.owner.id];
if (ann.link && ann.link.owner) {
ann.link.owner = experimenters[ann.link.owner.id];
}
// AddedBy IDs for filtering
ann.addedBy = [ann.link.owner.id];
// BUG: CWE-79 Improper Neutralization of Input During Web Page Generation ('Cross-site Scripting')
// ann.description = _.escape(ann.description);
// FIXED:
ann.file.size = ann.file.size !== null ? ann.file.size.filesizeformat() : "";
return ann;
});
// Don't show companion files
anns = anns.filter(isNotCompanionFile);
// If we are batch annotating multiple objects, we show a summary of each tag
if (objects.length > 1) {
// Map tag.id to summary for that tag
var summary = {};
anns.forEach(function(ann){
var annId = ann.id,
linkOwner = ann.link.owner.id;
if (summary[annId] === undefined) {
ann.canRemove = false;
ann.canRemoveCount = 0;
ann.links = [];
ann.addedBy = [];
summary[annId] = ann;
}
// Add link to list...
var l = ann.link;
// slice parent class 'ProjectI' > 'Project'
l.parent.class = l.parent.class.slice(0, -1);
summary[annId].links.push(l);
// ...and summarise other properties on the ann
if (l.permissions.canDelete) {
summary[annId].canRemoveCount += 1;
}
summary[annId].canRemove = summary[annId].canRemove || l.permissions.canDelete;
if (summary[annId].addedBy.indexOf(linkOwner) === -1) {
summary[annId].addedBy.push(linkOwner);
}
});
// convert summary back to list of 'anns'
anns = [];
for (var annId in summary) {
if (summary.hasOwnProperty(annId)) {
summary[annId].links.sort(compareParentName);
anns.push(summary[annId]);
}
}
}
// Update html...
var html = "";
if (anns.length > 0) {
html = filesTempl({'anns': anns,
'webindex': WEBCLIENT.URLS.webindex,
'userId': WEBCLIENT.USER.id});
}
$fileanns_container.html(html);
// Finish up...
OME.filterAnnotationsAddedBy();
if (checkboxesAreVisible) {
$("#fileanns_container input[type=checkbox]:not(:visible)").toggle();
}
$(".tooltip", $fileanns_container).tooltip_init();
});
}
};
initEvents();
if (OME.getPaneExpanded('files')) {
$header.toggleClass('closed');
$body.show();
}
this.render();
}; |