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b/github_preprocessing.py deleted file mode 100644 index e934296077caf8b4ffcedacedaba1e954a6e6a18..0000000000000000000000000000000000000000 --- a/github_preprocessing.py +++ /dev/null @@ -1,146 +0,0 @@ -import gzip -import multiprocessing -import os -import shutil -import time -from argparse import Namespace -from collections import Counter -import numpy as np -from datasets import load_dataset, utils -import re -from huggingface_hub import Repository -from multiprocessing import Pool -from tqdm import tqdm - -# Settings -config = { - "dataset_name": "./data/github", - "num_workers": 96, - "line_max": 1000, - "out_path": "./data/github-code", - "repo_name": "github-code", - "org": "lvwerra", - "shard_size": 1000 << 20} - -args = Namespace(**config) - -PATTERN = re.compile(r'\s+') - - -def hash_func(text): - return hashlib.md5(re.sub(PATTERN, '', text).encode("utf-8")).hexdigest() - -def get_hash(example): - """Get hash of content field.""" - return {"hash": hash_func(example["content"])} - - -def line_stats(example): - """Calculates mean and max line length of file.""" - line_lengths = [len(line) for line in example["content"].splitlines()] - return {"line_mean": np.mean(line_lengths), "line_max": max(line_lengths)} - - -def alpha_stats(example): - """Calculates mean and max line length of file.""" - alpha_frac = np.mean([c.isalnum() for c in example["content"]]) - return {"alpha_frac": alpha_frac} - - -def check_uniques(example, uniques): - """Check if current hash is still in set of unique hashes and remove if true.""" - if example["hash"] in uniques: - uniques.remove(example["hash"]) - return True - else: - return False - - -def is_autogenerated(example, scan_width=5): - """Check if file is autogenerated by looking for keywords in the first few lines of the file.""" - keywords = ["auto-generated", "autogenerated", "automatically generated"] - lines = example["content"].splitlines() - for _, line in zip(range(scan_width), lines): - for keyword in keywords: - if keyword in line.lower(): - return {"autogenerated": True} - else: - return {"autogenerated": False} - - -def preprocess(example): - """Chain all preprocessing steps into one function to not fill cache.""" - results = dict() - results.update(get_hash(example)) - results.update(line_stats(example)) - return results - - -def filter(example, uniques, args): - """Filter dataset with heuristics.""" - if not check_uniques(example, uniques): - return False - elif example["line_max"] > args.line_max: - return False - else: - return True - -def save_shard(shard_tuple): - """Save shard""" - filename, shard = shard_tuple - shard.to_parquet(filename) - -# Load dataset -t_start = time.time() -ds = load_dataset(args.dataset_name, split="train", chunksize=40<<20) -print(f"Time to load dataset: {time.time()-t_start:.2f}") - -# Run preprocessing -t_start = time.time() -ds = ds.map(preprocess, num_proc=args.num_workers) -print(f"Time to preprocess dataset: {time.time()-t_start:.2f}") -print(ds) - -# Deduplicate hashes -uniques = set(ds.unique("hash")) -frac = len(uniques) / len(ds) -print(f"Fraction of duplicates: {1-frac:.2%}") - -# Deduplicate data and apply heuristics -t_start = time.time() -ds = ds.filter(filter, fn_kwargs={"uniques": uniques, "args": args}) -ds = ds.remove_columns(["line_mean", "line_max", "copies", "hash"]) -print(f"Time to filter dataset: {time.time()-t_start:.2f}") -print(f"Size of filtered dataset: {len(ds)}") - - -# Save dataset in repo -repo = Repository( - local_dir=args.out_path, - clone_from=args.org + "/" + args.repo_name, - repo_type="dataset", - private=True, - use_auth_token=True, - git_user="lvwerra", - git_email="leandro.vonwerra@gmail.com", - ) - -os.mkdir(args.out_path + "/data") - -if ds._indices is not None: - dataset_nbytes = ds.data.nbytes * len(ds._indices) / len(ds.data) -else: - dataset_nbytes = ds.data.nbytes - -num_shards = int(dataset_nbytes / args.shard_size) + 1 -print(f"Number of shards: {num_shards}") - -t_start = time.time() -shards = (ds.shard(num_shards=num_shards, index=i, contiguous=True) for i in range(num_shards)) -filenames = (f"{args.out_path}/data/train-{index:05d}-of-{num_shards:05d}.parquet" for index in range(num_shards)) - -with Pool(16) as p: - list(tqdm(p.imap_unordered(save_shard, zip(filenames, shards), chunksize=4), total=num_shards)) -print(f"Time to save dataset: {time.time()-t_start:.2f}") - -# To push to hub run `git add/commit/push` inside dataset repo folder \ No newline at end of file diff --git a/query.sql b/query.sql deleted file mode 100644 index 636a568379a499521553a3643338a4bdbabb4c0e..0000000000000000000000000000000000000000 --- a/query.sql +++ /dev/null @@ -1,84 +0,0 @@ -SELECT - f.repo_name, - f.path, - c.copies, - c.size, - c.content, - l.license -FROM - (select f.*, row_number() over (partition by id order by path desc) as seqnum - from `bigquery-public-data.github_repos.files` AS f) f -JOIN - `bigquery-public-data.github_repos.contents` AS c -ON - f.id = c.id AND seqnum=1 -JOIN - `bigquery-public-data.github_repos.licenses` AS l -ON - f.repo_name = l.repo_name -WHERE - NOT c.binary - AND ((f.path LIKE '%.asm' - OR f.path LIKE '%.bat' - OR f.path LIKE '%.cmd' - OR f.path LIKE '%.c' - OR f.path LIKE '%.h' - OR f.path LIKE '%.cs' - OR f.path LIKE '%.cpp' - OR f.path LIKE '%.hpp' - OR f.path LIKE '%.c++' - OR f.path LIKE '%.h++' - OR f.path LIKE '%.cc' - OR f.path LIKE '%.hh' - OR f.path LIKE '%.C' - OR f.path LIKE '%.H' - OR f.path LIKE '%.cmake' - OR f.path LIKE '%.css' - OR f.path LIKE '%.dockerfile' - OR f.path LIKE '%.f90' - OR f.path LIKE '%.f' - OR f.path LIKE '%.f03' - OR f.path LIKE '%.f08' - OR f.path LIKE '%.f77' - OR f.path LIKE '%.f95' - OR f.path LIKE '%.for' - OR f.path LIKE '%.fpp' - OR f.path LIKE '%.go' - OR f.path LIKE '%.hs' - OR f.path LIKE '%.html' - OR f.path LIKE '%.java' - OR f.path LIKE '%.js' - OR f.path LIKE '%.jl' - OR f.path LIKE '%.lua' - OR f.path LIKE '%.md' - OR f.path LIKE '%.markdown' - OR f.path LIKE '%.php' - OR f.path LIKE '%.php3' - OR f.path LIKE '%.php4' - OR f.path LIKE '%.php5' - OR f.path LIKE '%.phps' - OR f.path LIKE '%.phpt' - OR f.path LIKE '%.pl' - OR f.path LIKE '%.pm' - OR f.path LIKE '%.pod' - OR f.path LIKE '%.perl' - OR f.path LIKE '%.ps1' - OR f.path LIKE '%.psd1' - OR f.path LIKE '%.psm1' - OR f.path LIKE '%.py' - OR f.path LIKE '%.rb' - OR f.path LIKE '%.rs' - OR f.path LIKE '%.sql' - OR f.path LIKE '%.scala' - OR f.path LIKE '%.sh' - OR f.path LIKE '%.bash' - OR f.path LIKE '%.command' - OR f.path LIKE '%.zsh' - OR f.path LIKE '%.ts' - OR f.path LIKE '%.tsx' - OR f.path LIKE '%.tex' - OR f.path LIKE '%.vb' - OR f.path LIKE '%Dockerfile' - OR f.path LIKE '%Makefile') - AND (c.size BETWEEN 0 - AND 1048575)) \ No newline at end of file