maom commited on
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669e5c9
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1 Parent(s): b4c9ece

used existing split rather than MolFlux splitting

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  1. README.md +6 -13
README.md CHANGED
@@ -143,27 +143,20 @@ First, from the command line, install `MolFlux` library with `catboost` and `rdk
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  then load, featurize, split, fit, and evaluate the a catboost model
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  import json
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- from molflux.datasets import load_dataset, featurise_dataset, split_dataset
 
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  from molflux.features import load_from_dicts as load_representations_from_dicts
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  from molflux.splits import load_from_dict as load_split_from_dict
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  from molflux.modelzoo import load_from_dict as load_model_from_dict
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  from molflux.metrics import load_suite
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- dataset = load_dataset('maomlab/B3DB', config_name = 'B3DB_classification')
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- featurised_dataset = featurise_dataset(
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- dataset,
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  column = "SMILES",
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  representations = load_representations_from_dicts([{"name": "morgan"}, {"name": "maccs_rdkit"}]))
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-
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- shuffle_strategy = load_split_from_dict({
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- "name": "shuffle_split",
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- "presets": {
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- "train_fraction": 0.8,
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- "validation_fraction": 0.0,
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- "test_fraction": 0.2}})
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- split_featurised_dataset = next(split_dataset(featurised_dataset, shuffle_strategy))
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-
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  model = load_model_from_dict({
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  "name": "cat_boost_classifier",
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  "config": {
 
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  then load, featurize, split, fit, and evaluate the a catboost model
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  import json
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+ from datasets import load_set
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+ from molflux.datasets import featurise_dataset
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  from molflux.features import load_from_dicts as load_representations_from_dicts
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  from molflux.splits import load_from_dict as load_split_from_dict
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  from molflux.modelzoo import load_from_dict as load_model_from_dict
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  from molflux.metrics import load_suite
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+ split_dataset = load_dataset('maomlab/B3DB', name = 'B3DB_classification')
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+ split_featurised_dataset = featurise_dataset(
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+ split_dataset,
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  column = "SMILES",
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  representations = load_representations_from_dicts([{"name": "morgan"}, {"name": "maccs_rdkit"}]))
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+
 
 
 
 
 
 
 
 
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  model = load_model_from_dict({
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  "name": "cat_boost_classifier",
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  "config": {