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false | 2009-06-18 18:31:59 | Functional Collection Parameters: A different way of thinking about collections | [
"functional-programming",
"functional-collection-parameters"
] | [
".NET"
] | One of the changes that I've noticed in my coding now compared to around 7 or 8 months ago is that whenever there's some operations to be performed on a collection I am far more inclined to think of how to do those operations using a functional approach.
I've written previously about the ways I've been http://www.markhneedham.com/blog/2008/12/17/functional-collection-parameters-in-c/[making use] http://www.markhneedham.com/blog/2009/02/03/c-refactoring-to-functional-collection-parameters/[of] http://www.markhneedham.com/blog/2009/06/16/functional-collection-parameters-handling-the-null-collection/[functional] http://www.markhneedham.com/blog/2009/01/19/f-vs-c-vs-java-functional-collection-parameters/[collection] parameters in my code but what I hadn't really considered was that the way of thinking about the problem we want to solve is slightly different.
While http://twitter.com/deanrcornish[Dean] and I were talking through http://www.markhneedham.com/blog/2009/06/16/functional-collection-parameters-handling-the-null-collection/[the refactoring that I mentioned in my post about handling null collections], we realised that the way it was originally written followed a very sequential mindset.
[source,csharp]
----
public IEnumerable<Foo> MapFooMessages(IEnumerable<FooMessage> fooMessages)
{
var result = new List<Foo>();
if(fooMessages != null)
{
foreach(var fooMessage in fooMessages)
{
result.Add(new Foo(fooMessage));
}
}
return result;
}
----
* Create a new collection
* Take an existing collection
* If it's not null then iterate over the existing collection
* Add each item to the new collection
* Return the new collection
I find when I'm thinking about doing this type of code now my thought process is *more focused towards the collection as a whole* rather than about the individual items in the collection.
If I do want to only apply an operation on a subset of the collection then I need to first apply another function to the whole collection that filters the collection down. I find myself thinking about what I want to happen rather than how I want to do it - *a declarative approach over an imperative one in summary*.
One of the LINQ C# extension methods which I sometimes find myself abusing is the 'ForEach' one which I feel is used a lot more times than is necessary and often ends up with complicated lambda blocks inside it which could be avoided by using some of the other functions.
To give a very simple example of some code I came across recently:
[source,csharp]
----
public IEnumerable<string> GetFooKeys(IEnumerable<Foo> foos)
{
var list = new List<string>();
foos.Where(foo => foo.Opted).ToList().ForEach(foo => list.Add(foo.Key));
return list;
}
----
We are making use of functional collection parameters but we can easily do this without using the 'ForEach' method:
[source,csharp]
----
public IEnumerable<string> GetFooKeys(IEnumerable<Foo> foos)
{
return foos.Where(foo => foo.Opted).Select(foo => foo.Key);
}
----
I think the danger with 'ForEach' is that we are creating side effects which may be unexpected. In this case there's not really that much problem as we're just adding a value to a list but it is possible to do anything else in the ForEach block as well.
I also came across a good post written by one of the 8th light guys talking about http://blog.8thlight.com/articles/2009/6/16/a-functional-refactoring-in-scala[the use of ForEach in Scala and how we can use it in a way that minimises side effects]. | null | null | [
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] | functional-collection-parameters-a-different-way-of-thinking-about-collections | https://markhneedham.com/blog/2009/06/18/functional-collection-parameters-a-different-way-of-thinking-about-collections |
false | 2009-06-27 22:55:02 | F#: More thoughts on the forward & application operators | [
"f"
] | [
"fsharp"
] | I've been spending a bit of time reading through the http://code.google.com/p/fake/source/checkout[Fake source code] to try and understand how it works and one of the things which I quite like about it is the way the authors have made use of different F# operators to make expressions easier to read by reducing the number of brackets that need to be written and reordering the functions/values depending on the particular context.
One which I hadn't seen before is the http://codebetter.com/blogs/matthew.podwysocki/archive/2009/04/27/functional-c-reverse-functional-composition.aspx[application operator] which is the opposite of the http://www.markhneedham.com/blog/2009/01/06/f-forward-operator/[forward operator] which I have previously written about.
[cols=2*]
|===
| The application operator (<
| ) applies a value to a function, the function being on the left and the value on the right.
|===
It is used in http://code.google.com/p/fake/source/browse/trunk/src/app/FakeLib/FileHelper.fs[FileHelper.fs] as part of the DeleteFile function:
[source,ocaml]
----
let DeleteFile x =
let file = new FileInfo(x)
if file.Exists then
log <| sprintf "Deleting %s" file.FullName
file.Delete()
else
log <| sprintf "%s does not exist." file.FullName
----
The log function is of type 'string \-> unit' and the sprintf call helps create that string. Without the application operator we would have to put in extra parentheses:
[source,ocaml]
----
log (sprintf "Deleting %s" file.FullName)
----
The code also makes use of the forward operator which I think panders more to the object oriented style of programming whereby you have have some data/object and then apply a method/function to that. I find that code written in this way reads more intuitively to me at the moment.
One example of this is the SetDirReadOnly function in FileHelper.fs
[source,ocaml]
----
let rec SetDirReadOnly readOnly (dir:DirectoryInfo) =
dir.GetDirectories() |> Seq.iter (fun dir ->
SetDirReadOnly readOnly dir
setDirectoryReadOnly readOnly dir)
dir.GetFiles() |> Seq.iter (fun file -> file.IsReadOnly <- readOnly)
----
In this case if we didn't have the forward operator then in theory we should be able to just put the 'dir.GetFiles()' can be passed as the second argument to 'Seq.iter':
[source,ocaml]
----
let rec SetDirReadOnly readOnly (dir:DirectoryInfo) =
dir.GetDirectories() |> Seq.iter (fun dir ->
SetDirReadOnly readOnly dir
setDirectoryReadOnly readOnly dir)
Seq.iter (fun file -> file.IsReadOnly <- readOnly) dir.GetFiles()
----
In fact what we get is a compilation error:
[source,text]
----
Successive arguments should be separated by spaces or tupled, and arguments involving function or method applications should be parenthesized.
----
In this case we need to paranthesise the 'dir.GetFiles()' method call:
[source,ocaml]
----
let rec SetDirReadOnly readOnly (dir:DirectoryInfo) =
dir.GetDirectories() |> Seq.iter (fun dir ->
SetDirReadOnly readOnly dir
setDirectoryReadOnly readOnly dir)
Seq.iter (fun file -> file.IsReadOnly <- readOnly) (dir.GetFiles())
----
Which leads to another compilation error:
[source,text]
----
Lookup on object of indeterminate type based on information prior to this program point. A type annotation may be needed prior to this program point to constrain the type of the object. This may allow the lookup to be resolved
----
In this case what we're being told is that the compiler is unable to work out the type of 'file' in the function being passed to 'Seq.iter'. We can fix this by specifically stating its type:
[source,ocaml]
----
let rec SetDirReadOnly readOnly (dir:DirectoryInfo) =
dir.GetDirectories() |> Seq.iter (fun dir ->
SetDirReadOnly readOnly dir
setDirectoryReadOnly readOnly dir)
Seq.iter (fun (file:FileInfo) -> file.IsReadOnly <- readOnly) (dir.GetFiles())
----
It works but it seems to miss the point of getting the F# compiler to infer which types you're talking about - the forward operator simplifies the code a lot. I also think the code is more readable having 'files' at the beginning as it seems more obvious that the function is being applied to the sequence of files when written this way.
These operators are pretty cool and I've found it quite useful to look at the http://research.microsoft.com/en-us/um/cambridge/projects/fsharp/manual/FSharp.Core/Microsoft.FSharp.Core.Operators.html[full list of the F# operators available on the Microsoft Research website] as there may well be even more built in functions that can help simplify our code further. | null | null | [
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] | f-more-thoughts-on-the-forward-application-operators | https://markhneedham.com/blog/2009/06/27/f-more-thoughts-on-the-forward-application-operators |
false | 2009-06-11 07:44:41 | Coding: Keep method/variable names positive | [
"coding"
] | [
"Coding"
] | Something which I've come across a few times recently in code is method names which describe the negative aspect of something and for me at least these are very difficult to understand since I need to keep remembering that we are dealing with the negative and not the positive which I think is significantly easier to reason about.
A recent example of this which I came across was in some acceptance test code which among other things was asserting whether or not the policy number that had been created was in a valid format and returning the result of that assertion back to our Fitnesse fixture.
The code to do this was similar to this - we are using the 'http://dannorth.net/introducing-bdd[Given, When, Then]' syntax for acceptance testing and this code came under the 'Then' section:
[source,csharp]
----
public bool ThenCustomerShouldSeePageWithPurchasedPolicy()
{
...
var policyNumber = GetPolicyNumber();
if(InvalidPolicyNumber(policyNumber))
{
return false;
}
...
}
----
[source,csharp]
----
private bool InvalidPolicyNumber(string policyNumber)
{
string integerPattern = "^[0-9]{7}$";
return policyNumber.Substring(0,5) != "POLIC" && !Regex.IsMatch(policyNumber.Substring(6,7), integerPattern) && policyNumber.Length != 12
}
----
Originally the lines of code in 'InvalidPolicyNumber' were actually inlined in the 'ThenCustomerShouldSeePageWithPurchasedPolicy' method but we pulled them out to try and understand the code more easily.
I still found it quite difficult to reason about what made an invalid policy since the reasoning of what makes something invalid from reading this code is:
* The first 5 characters are not 'POLIC'
* The next 7 characters are not digits
* The total length is not 12
The actual rule for a valid policy number are:
* It should start with the characters 'POLIC'
* The next 7 characters should be digits
* The total length should be 12
So in fact our 'InvalidPolicyNumber' method as well as being quite difficult to read will only tell us that a policy number is invalid if all 3 of those conditions have not been met when in actual fact if any of them are not met the policy number is invalid. A perhaps subtle error has crept in!
We refactored the code to http://www.markhneedham.com/blog/2008/12/11/code-for-positive-data-values-not-negative/[refer to what we know is valid] rather than looking at the reverse which I think is much more difficult to reason about.
[source,csharp]
----
public bool ThenCustomerShouldSeePageWithPurchasedPolicy()
{
...
var policyNumber = GetPolicyNumber();
if(!ValidPolicyNumber(policyNumber))
{
return false;
}
...
}
----
[source,csharp]
----
private bool ValidPolicyNumber(string policyNumber)
{
string integerPattern = "^[0-9]{7}$";
return policyNumber.Substring(0,5) == "POLIC" && Regex.IsMatch(policyNumber.Substring(6,7), integerPattern) && policyNumber.Length == 12
}
----
I've come across a few other examples and the underlying theme is that I find it much easier to reason about code which is written using positive method/variable names and then make use of language constructs if we need to invert that somewhere.
I find it takes me much longer to understand methods which refer to the negative and every time I come back to them in the future I have to reason through each line slowly to make sure I understand what's going on. | null | null | [
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] | coding-keep-methodvariable-names-positive | https://markhneedham.com/blog/2009/06/11/coding-keep-methodvariable-names-positive |
false | 2009-06-29 00:28:14 | F#: Setting properties like named parameters | [
"f",
"objects"
] | [
"fsharp"
] | One of the most frustrating things for me lately about interacting with C# libraries from F# has been setting up objects through the use of properties.
While I am against the use of setters to construct objects in the first place, that's the way that a lot of libraries work so it's a bit of a necessary evil!
In C# we would typically make use of the http://www.markhneedham.com/blog/2009/02/16/c-object-initializer-and-the-horse-shoe/[object initializer] syntax to do this, but in F# I've been writing code like this to do the same thing:
[source,ocaml]
----
type MessageBuilder(?message:string, ?user:string) =
let buildMessage message user =
let twitterStatusBuilder = new TwitterStatus()
twitterStatusBuilder.Text <- message
twitterStatusBuilder.User <-
let userBuilder = new TwitterUser()
userBuilder.ScreenName <- user
userBuilder
twitterStatusBuilder
member self.Build() =
buildMessage (if message.IsSome then message.Value else "") (if user.IsSome then user.Value else "")
----
This is more verbose than strictly necessary but I wanted to try and ensure all mutations to objects were being done within the function creating it rather than creating an object and then mutating it which feels strange to me in F# land.
I recently realised that it's actually possible to call properties http://msdn.microsoft.com/en-us/library/dd233192(VS.100).aspx[in the same way that we can create objects using named parameters].
We therefore end up with the following code:
[source,ocaml]
----
type MessageBuilder(?message:string, ?user:string) =
let buildMessage message user = new TwitterStatus(Text = message, User = new TwitterUser(ScreenName = user))
member self.Build() =
buildMessage (if message.IsSome then message.Value else "") (if user.IsSome then user.Value else "")
----
Which is much more concise and does the same thing. | null | null | [
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] | f-setting-properties-like-named-parameters | https://markhneedham.com/blog/2009/06/29/f-setting-properties-like-named-parameters |
false | 2009-06-16 23:37:04 | Book Club: Arguments and Results (James Noble) | [
"books",
"papers",
"james-noble",
"arguments-and-results"
] | [
"Book Club"
] | We restarted our book club again last week by reading http://www.laputan.org/pub/patterns/noble/noble.pdf[James Noble's Arguments and Results paper], a paper I came across from a http://blog.objectmentor.com/articles/2009/02/26/10-papers-every-programmer-should-read-at-least-twice[Michael Feathers blog post a few months ago detailing 10 papers that every programmer should read].
We decided to try out the idea of reading papers/individual chapters from books as it allows us to vary the type of stuff we're reading more frequently and is an approach which http://blog.obiefernandez.com/content/2009/06/agile-design-o-rly.html[Obie seems to be having some success with].
This firs half of paper describes some approaches for detailing with complexity in the arguments that we send to methods and the second half approaches for the results that we get back from methods.
We split the different patterns between us and attempted to come up with examples in code we'd worked on where we'd seen each of the patterns in use.
== Arguments Object
This pattern is used to simplify a method's signature by grouping up the common arguments and object and changing the method signature to take in this object instead.
The author quotes http://en.wikipedia.org/wiki/Alan_Perlis[Alan Perlis] as saying "If you have a procedure with 10 parameters you probably missed some" which I think best sums up the reason why you would want to do this refactoring.
Another advantage of doing this, which http://camswords.wordpress.com/[Cam] pointed out, is that it may help to bring out domain concepts which weren't explicit before.
The disadvantage of this approach is that we make it more difficult for clients to use our API. I think this was http://www.markhneedham.com/blog/2009/04/27/coding-weakstrong-apis/#comment-15672[best summed up in a comment on a post I wrote about using weak or strong APIs] by 'Eric':
____
The choice is between passing (1) what the client probably has on hand already (the pieces) vs. passing (2) what the class demands (a pre-formed object). Which serves the client better and more naturally? Which brick-and-mortar shop gets more business--the one taking credit cards (already in the customers' hands), or the one demanding cash in some foreign currency (which the customers first have to go get)? Subordinate the service's convenience to the client's. Accept what a client likely has at the ready. (At the least, offer an overloaded constructor that does so.)
____
A simple example from some code I worked on recently involved refactoring a few methods similar to this:
[source,csharp]
----
public void Process(string streetName, string streetNumber, string state) { }
----
to:
[source,csharp]
----
public void Process(Address address) { }
----
Some other examples which we thought of were:
* The way that Ruby makes use of hashmaps to pass data into constructors instead of passing in each option individually to a separate parameter
* http://www.martinfowler.com/apsupp/spec.pdf[The specification pattern]/Query object pattern
== Selector Object
This pattern is used to try and reduce the number of similar methods that exist on an object by creating one method which takes in the original object and an additional 'selector object' argument which is used to determine what exactly we do inside the new method.
The author also describes another way of solving this problem which is to build a small inheritance hierarchy and then make use of the double dispatch pattern to determine which specific method needs to be called.
The advantage of this pattern is that it helps to simplify the API of the object as there is now just one method to call to perform that specific operation.
The disadvantage is that the client of this object needs to do more work to use it although again I feel that this patterns helps to draw out domain concepts and move behaviour to the correct places.
I worked on a project where we did something similar to this although I'm not sure if it's exactly the same:
[source,csharp]
----
public abstract class OurObject
{
public abstract void Configure(Configuration configuration)
}
public class ObjectOne : OurObject
{
public void Configure(Configuration configuration)
{
configuration.ConfigureObjectOne(this);
}
}
public class ObjectTwo : OurObject
{
public void Configure(Configuration configuration)
{
configuration.ConfigureObjectTwo(this);
}
}
----
[source,csharp]
----
public class Configuration
{
public void ConfigureObjectOne(ObjectOne objectOne)
{
// do config stuff
}
public void ConfigureObjectTwo(ObjectTwo objectTwo)
{
// do config stuff
}
...
}
----
We felt that possibly the http://en.wikipedia.org/wiki/Composite_pattern[composite pattern] might work well especially for the example described in the paper although we didn't come up with any other examples of this pattern on code we'd worked on.
== Curried Object
This pattern is used to help simplify the arguments that a client needs to send to an object by simplifying that interface through the use of a 'curried object' which takes care of any values that the object needs which the client doesn't need to worry about (these could be arguments which don't really change for example).
The client now sends its arguments to the 'curried object' which is then sent to the object.
I've come across the idea of http://diditwith.net/2008/01/30/WhyILoveFFunctionsFunctionsFunctions.aspx[currying] while playing around with F# and in the functional world it seems to be about composing functions together, each of which only takes in one argument. I'm not sure if the author uses such a strict definition as that.
The advantage of this pattern is that it helps to simplify things for the client of the object although we now add in a level of indirection into the code because we send data to the 'curried object' which is actually executed by another example.
I'm not sure whether it's strictly currying but an example which seemed to fit into this pattern is where we make calls to external services which might require some arguments passed to them that the rest of our application doesn't care about.
We therefore keep this setup inside a 'Gateway' object which the rest of our code interacts with. The 'Gateway' object can then send the external services this data and the data we pass it.
http://en.wikipedia.org/wiki/Iterator[Iterators] are suggested as being the most common use of currying in our code as they shield us from the internals of how the data is stored.
== Result Object
This pattern is used to allow us to keep the results of potentially expensive operations so that we don't need to make several of these expensive calls to get the data that we want.
The advantage of doing this is that we are able to make out code more efficient although the client needs to do more work to get the data they care about out of the returned object.
An example of this could be if we are making a call across the network to get some data. If there are three pieces of data that we want then it makes more sense to get all this data in one 'result object'
instead of making individual calls for the data.
I think this pattern is also useful in situations where there are multiple outcomes from an operation and we want to signify this in the result we return.
An example of where this might be useful could be if we want to know whether a call was successful or not and if it wasn't then we want details about the way in which it failed. This could easily be modeled in a result object.
I'm not sure whether an Option/Maybe in functional programming could be considered to be a result object - they do return more information than other data types do although this isn't for performance purposes.
== Future Object
This pattern is used when we want to perform an expensive operation and do something else while we wait for that operation to return - effectively we want to asynchronously process a result and then probably call a callback when it's done.
This pattern is useful when we want to go and get some data via a network call but we don't want to freeze up the user interface while we're doing that. I think this pattern is probably more applicable for client side applications than on the web where the typical approach I've seen is to block the use from doing anything while an operation is being executed. Perhaps something like Gmail does make use of this pattern though, I'm not sure.
The concurrency aspects should be taken care of by the 'future object' in this pattern meaning that the future object will be more complicated than other code.
http://www.infoq.com/articles/pickering-fsharp-async[F# asynchronous work flows] certainly seem to be an example of this pattern whereby we make use of other threads to make network calls or put data into a database before returning results to the main thread when they're done.
== Lazy Object
This pattern is used when we want to return a result but we don't know whether or not that method will actually be called - we therefore only get the data when the method is actually called.
The advantage of this is that we don't get data unnecessarily although it can be difficult to debug since we don't know exactly when the data is going to be fetched.
An example of this is Hibernate which by http://docs.jboss.org/hibernate/stable/core/reference/en/html/performance.html[default lazy loads] our data. If we later on try to access some data inside an aggregate root then we need to ensure that we have a Hibernate session open so that it is able to go and fetch the data for us.
F# also has a 'lazy' keyword which we can use to create lazy values which are only evaluated when specifically called:
[source,ocaml]
----
let foo value =
printfn "%d" value
value > 10
let fooBar = lazy foo 10
> fooBar.Force();;
10
false
----
http://dotnetperls.com/lazy-linq-queries[LINQ in C#] also makes use of lazy evaluation.
== In Summary
I think this is a really interesting paper and it was the first one that caught my eye from briefly skimming through the 10 that Michael Feathers listed.
I found it quite difficult explaining some of the patterns so if anything doesn't make sense or you can think of a better way describing a pattern then please let me know.
Book club wise it was good to get to discuss what I'd read as others always come up with ideas that you hadn't thought of and we had some interesting discussions.
Next time we are reading 'http://www.mockobjects.com/book/readability.html[The Readability of Tests]' from Steve Freeman and Nat Pryce's upcoming book 'http://www.mockobjects.com/book/index.html[Growing Object Oriented Software, guided by tests]'. | null | null | [
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] | book-club-arguments-and-results-james-noble | https://markhneedham.com/blog/2009/06/16/book-club-arguments-and-results-james-noble |
false | 2009-06-16 20:29:29 | Functional Collection Parameters: Handling the null collection | [
"c",
"net",
"functional-programming",
"functional-collection-parameters"
] | [
".NET"
] | One of the interesting cases where I've noticed we tend to avoid http://www.markhneedham.com/blog/2008/12/17/functional-collection-parameters-in-c/[functional] http://www.markhneedham.com/blog/2009/01/19/f-vs-c-vs-java-functional-collection-parameters/[collection parameters] in our code base is when there's the possibility of the collection being null.
The code is on the boundary of our application's interaction with another service so it is actually a valid scenario that we could receive a null collection.
When using extension methods, although we wouldn't get a null pointer exception by calling one on a null collection, we would get a 'source is null' exception when the expression is evaluated so we need to protect ourself against this.
As a result of defending against this scenario we have quite a lot of code that looks like this:
[source,csharp]
----
public IEnumerable<Foo> MapFooMessages(IEnumerable<FooMessage> fooMessages)
{
var result = new List<Foo>();
if(fooMessagaes != null)
{
foreach(var fooMessage in fooMessages)
{
result.Add(new Foo(fooMessage));
}
}
return result;
}
----
The method that we want to apply here is 'Select' and even though we can't just apply that directly to the collection we can still make use of it.
[source,csharp]
----
private IEnumerable<Foo> MapFooMessages(IEnumerable<FooMessage> fooMessages)
{
if(fooMessages == null) return new List<Foo>();
return fooMessages.Select(eachFooMessage => new Foo(eachFooMessage));
}
----
There's still duplication doing it this way though so I pulled it up into a 'SafeSelect' extension method:
[source,csharp]
----
public static class ICollectionExtensions
{
public static IEnumerable<TResult> SafeSelect<TSource, TResult>(this IEnumerable<TSource> source, Func<TSource, TResult> selector)
{
return source == null ? new List<TResult>() : source.Select(selector) ;
}
}
----
We can then make use of this extension method like so:
[source,csharp]
----
private IEnumerable<Foo> MapFooMessages(IEnumerable<FooMessage> fooMessages)
{
return fooMessages.SafeSelect(eachFooMessage => new Foo(fooMessage));
}
----
The extension method is a bit different to the original way that we did this as I'm not explicitly converting the result into a list at the end which means that it will only be evaluated when the data is actually needed.
In this particular case I don't think that decision will have a big impact but it's something interesting to keep in mind. | null | null | [
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] | functional-collection-parameters-handling-the-null-collection | https://markhneedham.com/blog/2009/06/16/functional-collection-parameters-handling-the-null-collection |
false | 2009-06-16 18:55:38 | C#/F#: Using .NET framework classes | [
"c",
"net",
"f"
] | [
".NET",
"fsharp"
] | I was recently discussing F# with a couple of colleagues and one thing that came up is the slightly different ways that we might choose to interact with certain .NET framework classes compared to how we use those same classes in C# code.
One of those where I see potential for different use is the Dictionary class.
In C# code when we're querying a dictionary to check that a value exists before we try to extract it we might typically do this:
[source,csharp]
----
public string GetValueBy(string key)
{
var dictionary = new Dictionary<string, string>() { {"key", "value" } };
if(dictionary.ContainsKey(key))
{
return dictionary[key];
}
return ""; // maybe we'd do something else here but for the sake of this we return the empty string
}
----
There is an alternative way to do this but it makes use of the 'out' keyword so it's generally frowned upon.
[source,csharp]
----
public string GetValueBy(string key)
{
var dictionary = new Dictionary<string, string>() {{"key", "value"}};
string value = "";
dictionary.TryGetValue(key, out value);
return value;
}
----
In F# when we make use of a method which effectively defines a second return parameter by using the 'out' keyword the return value of that method becomes a tuple containing that value.
For example when querying Dictionary:
[source,ocaml]
----
open System.Collections.Generic
open System
open System.Globalization
let testDictionary =
let builder = new Dictionary<string, string>()
builder.Add("key1", "value")
builder
let getByKey key =
let result, value = testDictionary.TryGetValue(key)
if(result) then value result else ""
----
The return type of TryGetValue is 'bool * string' in this case and by assigning that result to two different values we can get the appropriate values. This is certainly a time when http://www.markhneedham.com/blog/2009/06/02/f-tuples-dont-seem-to-express-intent-well/[tuples] are really useful for simplifying our code.
We could have made use of an 'out' parameter as we did in C# but I think it's much easier to just use the tuple. Dustin Campbell http://diditwith.net/2008/01/29/WhyILoveFResultTuples.aspx[describes the other ways we could extract a value from a dictionary on his blog].
It's not significantly more concise code wise compared to the C# way of doing things although from a brief look at the way that the Dictionary code works in http://www.red-gate.com/products/reflector/[Reflector] theoretically we are making less calls to the underlying data structure to get the value from it.
I tried timing 100,000 accesses to a dictionary with each approach to see if the total time would be significantly different but there wasn't any noticeable difference.
There are other 'Try...' methods defined in the base class library - DateTime for example has some more - which I've never used in C# so I'd be intrigued to see whether other languages that run on the CLR will make use of these methods. | null | null | [
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] | cf-using-net-framework-classes | https://markhneedham.com/blog/2009/06/16/cf-using-net-framework-classes |
false | 2009-06-26 00:02:45 | Safe refactoring: Removing object initializer, introducing builder | [
"coding",
"refactoring",
"safe"
] | [
"Coding",
"Incremental Refactoring"
] | I previously wrote about http://www.markhneedham.com/blog/2009/05/26/refactoring-removing-duplication-more-safely/[an approach we took to safely remove some duplication] and I recently followed a similar mantra to replace an http://www.markhneedham.com/blog/2009/02/16/c-object-initializer-and-the-horse-shoe/[object initializer] call which had around 40 properties being setup with a builder to try and make the code a bit easier to understand.
We did have tests checking the values being setup by the object initializer so I was already able to refactor with some degree of safety - it would probably have been possible to just create the builder and build the object from that and then delete the old code and replace it with the new but I've caused myself too many problems from doing that before that I decided to try a more incremental approach.
The idea was to have the builder and the object initializer both creating the object at the same time and as I built a property from the builder I would set it in the object initializer until eventually all of the properties were being set directly from the builder's object and then I could just return that instead - this approach feels quite similar to what Kent Beck describes as having parallel implementations in http://www.infoq.com/presentations/responsive-design[his recent presentation on Responsive Design].
The code I started with was something like this:
[source,csharp]
----
public Foo CreateMeAFoo()
{
return new Foo
{
Bar = "someValue",
OtherBar = "someOtherValue",
UltraBar = "aValue",
...
AnotherArgumentWayDownHere = 1
...
AndSoOn = "yes"
}
}
----
I worked together with one of the business analysts on our team who pointed out that there were actually some clear groupings in what I had just been considering 'data' and we were able to put those explicit domain concepts into the code as part of the builder.
My first step however was to remove the object initializer to avoid making any silly mistakes - an example of one I have made when using object initializers is to set a property using 'Int16.Parse' and then passing in a string with a value of "53700" which causes the method to throw an exception and the stack trace just directs you to the first line of the object initializer, making it quite difficult to work out which line has failed.
Having worked the code into a sequence of setters I gradually added methods to the builder to create the policy:
[source,csharp]
----
public Foo CreateMeAFoo()
{
var fooBuilder = new FooBuilder().AddBars("someValue", "someOtherValue", "aValue);
var newFoo = fooBuilder.Build();
var foo = new Foo();
foo.Bar = newFoo.Bar;
foo.OtherBar = newFoo.OtherBar;
foo.UltraBar = newFoo.UltraBar;
...
foo.AnotherArgumentWayDownHere = 1
return foo;
}
----
[source,csharp]
----
public class FooBuilder
{
private string bar;
private string otherBar;
private string ultraBar;
public FooBuilder AddBars(string bar, string otherBar, string ultraBar)
{
this.bar = bar;
this.otherBar = otherBar;
this.ultraBar = ultraBar;
return this;
}
public Foo Build()
{
var foo = new Foo();
foo.Bar = bar;
foo.OtherBar = otherBar;
foo.UltraBar = ultraBar;
return foo;
}
}
----
I created some duplication by doing this - I am now creating the 'Foo' twice - but I didn't check any of the code into the main branch until I had totally replaced the original Foo creation with the builder.
I did about two of three properties at a time and then ran the tests which I thought might be too small a step but actually saved me on a couple of occasions so it probably actually saved me time.
Eventually when I had all the tests passing I got rid of the original Foo and replaced it with the one from the builder:
[source,csharp]
----
public Foo CreateMeAFoo()
{
var fooBuilder = new FooBuilder().AddBars("someValue", "someOtherValue", "aValue);
return fooBuilder.Build();
}
----
This code is still in a state of transition - it is still possible to create an object with half the fields not set by passing in nulls to the builder for example - and I'm trying to work out what the best step is to fix that.
I generally prefer to have everything setup in the constructor and then you know that the object is in a good state as soon as you create it, but in this case moving everything straight into the constructor will probably make the object even more difficult to deal with.
My current thinking is to maybe check the pre conditions for creating the object inside the builder and then refactor out value objects so that there are not so many properties overall but I'm open to other ideas. | null | null | [
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] | safe-refactoring-removing-object-initializer-introducing-builder | https://markhneedham.com/blog/2009/06/26/safe-refactoring-removing-object-initializer-introducing-builder |
false | 2009-06-26 18:15:23 | Coding Dojo #18: Groovy Bowling Game | [
"oop",
"coding-dojo",
"bowling-game",
"groovy"
] | [
"Coding Dojo"
] | This week's dojo involved coding a familiar problem - the http://www.markhneedham.com/blog/2008/11/06/object-calisthenics-first-thoughts/[bowling] http://www.markhneedham.com/blog/2008/11/13/coding-dojo-2-bowling-game-object-calisthenics-continued/[game] - in a different language, Groovy.
The code we wrote is available on http://bitbucket.org/codingdojosydney/bowling-game-groovy/src/tip/src/[bitbucket].
== The Format
http://camswords.wordpress.com/[Cam], http://twitter.com/deanrcornish[Dean] and I took turns pairing with each other with the code projected onto a TV. As there were only a few of us the discussion on where we were taking the code tended to included everyone rather than just the two at the keyboard.
== What We Learnt
* I've sometimes wondered about the wisdom of running dojos in newer languages but this one worked quite well because Cam has been learning Groovy and he was able to point us in the right direction when we started writing Java-esque Groovy code. The particular syntax that I didn't know about was that you can define and put items into a list in a much simpler way than in Java: I was starting to write code like this: ~~~groovy def frames = new List+++<Frame>+++() frames.Add(frame) ~~~ Which Cam simplified down to: ~~~groovy def frames = [] frames << frame ~~~ I didn't feel that I missed the static typing you get in Java although IntelliJ wasn't quite as useful when it came to suggesting which methods you could call on a particular object. </li>
I'm even more convinced that using various languages functional equivalent of the 'for each' loop, in this case 'eachWith' and 'eachWithIndex' is http://www.markhneedham.com/blog/2009/06/18/functional-collection-parameters-a-different-way-of-thinking-about-collections/[not the way to go] and we could see http://bitbucket.org/codingdojosydney/bowling-game-groovy/src/tip/src/BowlingGame.groovy[our code becoming very complicated] when trying to work out how to score strikes thanks to our use of it!
I think we actually got further this time in terms of the implementation although we did slow down when it came to scoring strikes to try and work out exactly how we wanted to do it. Prior to this we had been following the idea of just getting the tests to pass and driving the design of the code that way but we at this stage it seemed foolish to keep doing that as the code would increased dramatically in complexity by doing so. The two approaches we were thinking of involved using the state pattern to determine what the current frame outcome was and then work out the cumulative score based on that by looking forward to future frames or an approach that would make use of functional collection parameters (not sure exactly which ones!) to calculate the score in a more function rather than OO way. </ul>
== For next time
* We'll probably keep going with some more Groovy as it's actually more interesting than I thought it would be. I'm also keen to do a coding dojo where we http://www.antiifcampaign.com/[never make use of the if statement].+++</Frame>+++ | null | null | [
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] | coding-dojo-18-groovy-bowling-game | https://markhneedham.com/blog/2009/06/26/coding-dojo-18-groovy-bowling-game |
false | 2009-06-21 17:21:22 | Seams: Some thoughts | [
"coding",
"software-development",
"seams"
] | [
"Software Development"
] | I pick up Michael Feathers' http://www.amazon.co.uk/Working-Effectively-Legacy-Robert-Martin/dp/0131177052/ref=sr_1_1?ie=UTF8&s=books&qid=1245554188&sr=8-1[Working Effectively with Legacy Code] book from time to time and one of my favourite parts of the book is the chapter where he talks about 'Seams'.
To quote the book:
____
A seam is a place where you can alter behaviour in your program without editing in that place
____
Seams in the book are generally discussed in terms of how we can get tests around legacy code which was written without easy testability in mind but I've noticed that the ideas behind seams seem to be more widely applicable than this.
The reason for using seams elsewhere is fairly similar as far as I can tell - *we want to alter the way that code works in a specific context but we don't want to change it in that place since it needs to remain the way it is when used in other contexts*.
== Removing dependencies
One place where we recently used what I consider to be a seam was to remove calls to external sites from our application when we were running our tests against the application in our normal build.
We don't have any control over these dependencies as they are completely external so we made calls to those urls go to localhost instead by adding an entry in our hosts file (C:\WINDOWS\system32\drivers\etc) like so:
[source,text]
----
127.0.0.1 external.site.com
----
On our UAT and production servers further down the pipeline we don't have that type of setting in the hosts file so those run against the real dependencies.
I think the ideal place to apply this seam would be in a configuration file where you would be able to configure dependencies but in this case the dependency is actually added in outside of our team's control so we decided to adjust the behaviour where we could albeit a bit further away from where the behaviour is than we would have liked.
== Impersonators
Another area where we might make use of seams in our systems is in the creation of what my colleague Julio Maia refers to as 'impersonators'.
Impersonators are little pieces of code that we write to *impersonate 3rd party systems we need to integrate with* - ideally we would have an impersonator for every integration point and we can make use of these impersonators at certain stages of our build rather than always having to call the real end point.
One example of an impersonator that we've used recently is a proxy which captures requests and responses being made to a service layer from our application and then just replays these back every other time the same requests are made.
The ideal place for this seams to be triggered (i.e. the seam's *enabling point*) is in a configuration which is independent of our production code and therefore allows us to choose when we want to make use of the impersonator and when we need to use the real service.
image::{{<siteurl>}}/uploads/2009/06/proxy.gif[proxy.gif,514]
In our case we have the endpoint defined in our 'web.config' and a step in our build process generates versions of that file for each of the environments that we might run our application in.
We can then change the 'service.Endpoint' entry to point to the proxy for our development environment but have it point to the real service layer for other environments. | null | null | [
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] | seams-some-thoughts | https://markhneedham.com/blog/2009/06/21/seams-some-thoughts |
false | 2009-06-07 08:19:01 | F#: Explicit interface implementation | [
"f",
"interfaces"
] | [
"fsharp"
] | I've been writing some code to map between CouchDB documents and F# objects and something which I re-learned while doing this is the way that interfaces work in F#.
In F# when you have a class which implements an interface that class makes use of explicit interface implementation.
This means that in order to access any members of the interface that the class implements you need to specifically refer to the interface by upcasting the value using the ':>' operator.
Given the following interface and class definitions:
[source,ocaml]
----
type CouchDBDocument =
abstract DocType : string
type UserDocument =
{ UserName:string; FirstName:string; Surname:string }
interface CouchDBDocument with member x.DocType = "User"
----
If we had the following value:
[source,ocaml]
----
let mark = { UserName = "mneedham"; FirstName = "Mark"; Surname = "Needham" }
----
In order to access the 'DocType' member of 'mark' we would need to do the following:
[source,ocaml]
----
(mark :> CouchDBDocument).DocType
----
Coming from the world of C# I had expected that it would be possible to define a value as being of type 'CouchDBDocument' and then pass in a value of UserDocument like this:
[source,ocaml]
----
let mark : CouchDBDocument = { UserName = "mneedham"; FirstName = "Mark"; Surname = "Needham" };;
----
But that doesn't actually compile:
[source,text]
----
error FS0191: The type CouchDBDocument does not contain a field UserName
----
It is possible to do this in C# as well although the implementation would be implicit in C# unless we explicitly declare it to be explicit like so:
[source,csharp]
----
public interface CouchDBDocument
{
string DocType { get; }
}
public class UserDocument : CouchDBDocument
{
string CouchDBDocument.DocType
{
get { return "User"; }
}
}
----
To access the 'DocType' property in this case we would need to be explicitly referring to the 'CouchDBDocument':
[source,csharp]
----
CouchDBDocument mark = new UserDocument();
Console.WriteLine(mark.DocType);
----
Mauricio Scheffer has an http://bugsquash.blogspot.com/2009/01/implementing-interfaces-in-f.html[interesting post where he talks about rewriting a piece of C# code in F#] which required him to use interfaces in F# and http://cs.hubfs.net/forums/permalink/7579/7586/ShowThread.aspx#7586[Brian McNamara explains on hubfs why explicit interface implementation can actually be quite useful].
The http://www.markhneedham.com/blog/2009/05/24/real-world-functional-programming-book-review/[Real World Functional Programming book] also has a chapter which describes interfaces in C# and F# and the way they differ very clearly. | null | null | [
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] | f-explicit-interface-implementation | https://markhneedham.com/blog/2009/06/07/f-explicit-interface-implementation |
false | 2009-06-09 23:29:15 | F#: Useful for scripting | [
"f",
"scripting"
] | [
"fsharp"
] | We had the need to do a bit of scripting recently to change the names of the folders where we store our artifacts to signify which artifacts were created from our build's production branch and which were generated from the main branch.
The problem we had was that we were ending up overwriting old artifacts from the main branch with the production branch's artifacts so we wanted to fix this.
We had already manually changed some of the folder names to work with the changes that had already been made to our deployment script to read from the proposed new folder names.
We therefore had a folder structure that looked like this:
* Artifacts
** 12
** 20
** 45
** 1000
** 1001
** Trunk-1050
** Prod-23
All the folders with numbers over 1000 were from the trunk build since our production build is only up to around 50. The trouble in the renaming was around the lower numbers where some could be production or trunk.
I think this could have been calculated by checking the creation date of the folders but I decided it was quicker at the time to just scan through them and manually note which were of each type.
At the time we didn't have F# installed so I wrote the script in Ruby but I decided to rewrite it later on in an F# script file and then use F# interactive to execute the script.
This is the script I've ended up with:
(rename.fsx)
[source,ocaml]
----
open System
open System.IO
open System.Text.RegularExpressions
let get_position_of_last_folder (dir:string) = dir.LastIndexOf('\\') + 1
let get_last_folder_name (dir:string) = dir.Substring(get_position_of_last_folder dir)
let get_rest_of_dir_name (dir:string) = dir.Substring(0, (get_position_of_last_folder dir)-1)
let create_new_dir_name dir =
let prodVersions = seq { yield! [47..48]; yield! [37..45]; yield! [28..34]; }
let folderName = get_last_folder_name dir
let isProdDir = prodVersions |> Seq.exists (fun item -> item = Int32.Parse(folderName))
let build_dir_name branch = (get_rest_of_dir_name dir) + "\\" + branch + "-" + folderName
if (isProdDir) then build_dir_name "Prod" else build_dir_name "Trunk"
let rename_directories = Array.filter (fun dir -> Regex.IsMatch(get_last_folder_name dir , "^[0-9]") ) >>
Array.iter (fun dir -> Directory.Move(dir, create_new_dir_name dir))
rename_directories <| Directory.GetDirectories("C:\\artifacts")
----
I don't really like the 'get_position_of_last_folder' function but it helped to remove the duplication in the following two functions. Maybe there's a better way to remove this duplication that I'm not aware of.
We can then execute this by using the following command (note I have added 'C:\Program Files\FSharp-1.9.6.2\bin' to the path):
[source,text]
----
fsi --exec --nologo rename.fsx
----
I wrote this script file in Visual Studio so that I could get all the Intellisense help that I need but it's not part of any project - it stands alone!
I learnt about the possibility to do scripting in F# from a blog post by Chris Smith http://blogs.msdn.com/chrsmith/archive/2008/09/12/scripting-in-f.aspx[where he talks about some of the ways that he's been able to use F# for scripting in his work].
I thought running an F# script would be significantly slower than running an equivalent Ruby one since the F# code needs to be compiled first but I didn't notice that the F# script ran any slower than the Ruby one just from observation. | null | null | [
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] | f-useful-for-scripting | https://markhneedham.com/blog/2009/06/09/f-useful-for-scripting |
false | 2009-06-30 23:09:35 | F#: What I've learnt so far | [
"altnet",
"f"
] | [
"fsharp"
] | I did a presentation of some of the stuff that I've learnt from playing around with F# over the last six months or so at the most recent http://sydney.ozalt.net/2009/05/june-meeting-f.html[Alt.NET Sydney meeting].
I've included the slides below but there was also some interesting discussion as well.
* One of the questions asked was around how you would deal with code on a real project with regards to structuring it and ensuring that it was maintainable. I'm not actually sure what the answer is to this question as I haven't written any code in F# that's in production but there are certainly applications written n F# that are in production - the main one that I know a bit about is one which http://pandamonial.com/[Amanda Laucher] worked on http://vimeo.com/3555080[which she spoke about at the Alt.NET conference in Seattle].
* There was some discussion about dynamic v static languages - http://fragmental.tw/[Phil] spoke of not caring about what type something is rather caring about what it does. I pretty much agree with this and I think when using languages which have quite strong type inference such as F# (and more-so Haskell from what I hear) then I think we do move more towards that situation.
* http://erik.doernenburg.com[Erik] raised the point that functional languages aren't the solution for everything and I certainly feel it's niche is probably around operations with heavy data parsing/mining involved. I'm not sure I'd fancy doing an ASP.NET MVC application only in F# although I've seen some WPF code written using F# (unfortunately can't remember where) which looked reasonable so I'm not sure we should write it off just yet.
I've put the code that I walked through in the presentation on http://bitbucket.org/markhneedham/altnet-sydney-fsharp/changeset/dfcbc2acf486/[bitbucket].
http://www.slideshare.net/markhneedham/f-what-ive-learnt-so-far?type=presentation[F#: What I've learnt so far] | null | null | [
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] | f-what-ive-learnt-so-far | https://markhneedham.com/blog/2009/06/30/f-what-ive-learnt-so-far |
false | 2009-06-08 17:05:46 | Pair Programming: So you don't want to do it... | [
"pair-programming"
] | [
"Pair Programming"
] | I've worked on several software development teams over the last few years - some that pair programmed all the time and some that didn't - and one of the key things that I've noticed is that the level of collaboration on these teams was significantly higher when pair programming was being done on a regular basis.
The following are some of the observations I have noticed in teams which don't pair program frequently.
== A culture of silence
The amount of communication in a team which doesn't pair is almost by that very definition going to be lower than in one that does - you don't have that almost constant dialogue/discussion going on that you get when a pair are at the keyboard since everyone is head down coding in their own little world.
A consequence of this is that *other types of communication are also reduced*.
When a room is full of people pairing it's not uncommon for someone to shout across the room for a colleague to come and help them and their pair with something. Since there is already a lot of communication going on this doesn't feel that unusual and since other people in the room might hear us speaking we can also get the benefits of http://alistair.cockburn.us/Osmotic+communication[osmotic communication].
When we don't have that it feels very awkward to do this and in fact often the person you call won't actually hear you since their head is down and focused on the task their working on.
The inclination the next time you need help is to just work it out yourself, further harming team collaboration.
== Code silos
Another consequence of having people working alone is that *people become very specialised in certain areas of the code base* and then when they either leave the project or are ill there isn't anyone else who knows their area to work in that area of the code.
It becomes obvious that we have silos in the code base when code starts to be referred to as "X's code' or 'X's way of doing things". Another danger sign is when there is a lot of talk about "handovers" - a sure sign that collaboration hasn't been taking place.
One way to address this problem without pair programming is to mandate that code reviews must be done before code written alone is checked into the source control system.
The problem with this is that there isn't really way to enforce it if people don't want to have their code looked at by someone else beyond reverting their changes which seems perhaps over confrontational.
== Repeated code
The tendency to end up with *several people solving the same problem* is one that rears itself quite frequently when people are working alone.
Since each developer doesn't have as much visibility into what their colleagues have been working on - the sharing of knowledge that pair programming encourages is absent - we often end up with several sub par solutions to the same problem instead of collaborating to come up with one good solution.
Repeated code is perhaps the biggest waste of any developer's time - we are adding no value at all by doing it and are creating confusion for our colleagues as they now don't know which bit of code is the correct one to use.
== In Summary
I'm sure there are ways to overcome these problems but I've never seen it done effectively without having people working together more closely.
I'd be interested in hearing ways that others have created collaborative teams without having developers collaborating closely by using a practice such as pair programming. | null | null | [
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] | pair-programming-so-you-dont-want-to-do-it | https://markhneedham.com/blog/2009/06/08/pair-programming-so-you-dont-want-to-do-it |
false | 2009-06-08 11:57:39 | Javascript: Using 'replace' to make a link clickable | [
"javascript"
] | [
"Javascript"
] | I've been doing a bit more work on my http://www.markhneedham.com/blog/2009/04/13/f-a-day-of-writing-a-little-twitter-application/[twitter application] over the weekend - this time taking the tweets that I've stored in CouchDB and displaying them on a web page.
One of the problems I had is that the text of the tweets is just plain text so if there is a link in a tweet then when I display it on a web page it isn't clickable since it isn't enclosed by the '<a href"..."></a>' tag.
Javascript has a 'replace' function which you can call to allow you to replace some characters in a string with some other characters.
What I actually wanted to do was surround some characters with the link tag but most of the examples I came across didn't explain how to do this.
Luckily I came across a http://www.webmasterworld.com/forum91/562.htm[forum post from a few years ago] which explained how to do it.
In this case then we would make use of a matching group on links to create a clickable link:
[source,javascript]
----
"Interesting post... Kanban & estimates http://tinyurl.com/p58o3r".replace(/(http:\/\/\S+)/g, "<a href='$1'>$1</a>");
----
Which results in a tweet with a nice clickable link:
[source,text]
----
"Interesting post... Kanban & estimates <a href='http://tinyurl.com/p58o3r'>http://tinyurl.com/p58o3r</a>"
---- | null | null | [
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] | javascript-using-replace-to-make-a-link-clickable | https://markhneedham.com/blog/2009/06/08/javascript-using-replace-to-make-a-link-clickable |
false | 2009-06-24 23:58:38 | QTB: Agile Adoption - How to stuff it up | [
"agile",
"thoughtworks",
"qtb"
] | [
"Software Development",
"QTB"
] | I attended the most recent http://www.thoughtworks.com/what-we-say/events/tech-briefing_au.html[ThoughtWorks Quarterly Technology briefing] on Tuesday which was titled 'http://www.thoughtworks.com/pdfs/aus-qtb-june09.pdf[Agile Adoption - How to stuff it up]' and presented by my colleagues Andy Marks and Martin Fowler.
There seems to be quite a few books out at the moment about how to introduce a more agile approach into your organisation - I've been reading http://www.amazon.co.uk/Lean-Agile-Software-Development-Enterprise-Objectives/dp/0321532899/ref=sr_1_5?ie=UTF8&s=books&qid=1245767478&sr=8-5[Lean-Agile Software Development] and http://www.amazon.co.uk/Becoming-Agile-imperfect-Imperfect/dp/1933988258/ref=sr_1_1?ie=UTF8&s=books&qid=1245767583&sr=8-1[Becoming Agile] and there is also a book called http://www.amazon.co.uk/Scaling-Lean-Agile-Development-Organizational/dp/0321480961/ref=sr_1_1?ie=UTF8&s=books&qid=1245767478&sr=8-1[Scaling Lean and Agile Development] - so I was intrigued to see whether the messages from this talk would be similar to those in these books.
== What did I learn?
* I often find when listening to Martin Fowler speak that although what he says is quite similar each time when speaking about agile there always seems to be something different that stands out for me each time. This time what stood out was his mention of the *Dreyfus model with regards to people's level of skill when it comes to agile* - when you first start out as a novice it's quite hard to keep the principles in mind so you spend a lot of time focusing on the practices and getting better at these but if you want to keep improving then at some stage you need to move up to a level where the principles do become more predominant.
* Andy made an interesting point that *IT and in particular software development is pretty much made for people who want to learn new things* and he also pointed out the myth that 'learning finishes at school'. I never really considered this before but for me it definitely applies - the process of learning new ideas appeals far more to me than the results and outcomes of projects so it was interesting to hear this coming from someone else.
* *Transparency with regards to bad news* was something else which was pointed out as being fairly important and it's certainly http://www.markhneedham.com/blog/2008/08/26/the-transparency-of-agile/[an area where we often run into trouble] - often organisations aren't used to bad news being delivered to them early and they get the impression that if it's going badly now then it's going to keep on going badly, rather than seeing that it's quite good to get bad news early because then you have time to fix it.
* Martin described the '*pilot project anti pattern*' which he has come across where organisations make use of agile on a project which noone really cares about and use it as a training ground. It was suggested that this is not an effective way of introducing an an agile approach as it doesn't matter to anyone so there's no incentive to work out whether the new approach is really beneficial or not.
* I liked the question that Andy posed about success and failure. He first of all asked anyone in the room who had seen an email from their CEO talking about a really successful project and congratulating the team to put their hands up. Pretty much the whole room did. He then asked who had received an email from their CEO talking about a failure and the lessons learned from that and only one person's hand went up! Andy is definitely right when he suggests that "*if you're not failing you're not learning anything*" and this is something which I've also come across from Andy Hunt in http://www.markhneedham.com/blog/2008/10/06/pragmatic-learning-and-thinking-book-review/[Pragmatic Learning and Thinking] and more recently I'm trying to get into the 'improvement ravine' with regards to learning F# as I'm still writing object oriented F# which I think is missing the point a bit. http://blogs.msdn.com/wesdyer/archive/2007/01/15/thinking-functionally.aspx[Thinking in a more functional way] is the key for me there.
* A question was raised about how agile can fit in with fixed price projects at the end where it was pointed out that if the price and the time are fixed then the *scope has to be variable* - it can be infinitely flexible. It's actually often the case that a lot of value can be delivered with reduced scope even though it doesn't seem that way when you're told that all three of them are fixed! | null | null | [
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] | qtb-agile-adoption-how-to-stuff-it-up | https://markhneedham.com/blog/2009/06/24/qtb-agile-adoption-how-to-stuff-it-up |
false | 2009-06-24 17:46:23 | Using Fiddler with IIS | [
"software-development",
"fiddler"
] | [
".NET"
] | We've been using http://www.fiddler2.com/fiddler2/[Fiddler] to debug the requests and responses sent via web services to a service layer our application interacts with and it works pretty well when you run the application using http://en.wikipedia.org/wiki/UltiDev_Cassini_Web_Server[Cassini] but by default won't work when you run the website through IIS.
The key to this as one of my colleagues (who gives credit to http://erik.doernenburg.com[Erik]) showed me today is to ensure that IIS is running under the same user that Fiddler is running under which in our case is the 'Administrator' account.
The default user for IIS is 'Network Service' but as far as I'm aware you can't actually launch an application such as Fiddler from that account.
We therefore changed IIS to run under the 'Administrator' account on local development machines since this is where we typically use Fiddler.
To do this we need to:
* Create a new application pool by going to the 'Application Pool' menu in IIS Manager and setting the 'Identity' of the new pool to be the Administrator account.
* Change the application pool for our application to match that new application pool.
* Go to 'Computer Management > Local Users and Groups > IIS_WPG' and add the Administrator as a user of that group.
Fiddler should now capture requests/responses!
I'm not sure running IIS as the Administrator account is such a great idea although it's only on the local development environment so maybe it's a reasonable trade off for the benefits we get from being able to debug web service communication. | null | null | [
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] | using-fiddler-with-iis | https://markhneedham.com/blog/2009/06/24/using-fiddler-with-iis |
false | 2009-06-23 19:31:37 | Visual Studio/Resharper: Changing the order of arguments | [
"resharper",
"visual-studio"
] | [
"Software Development"
] | We've recently run into some places in our tests where the expectation and actual values passed into http://nunit.org/index.php[NUnit]'s 'Assert.AreEqual' are the wrong way round, therefore meaning that the error messages we get when tests fail are somewhat confusing!
[source,csharp]
----
Assert.AreEqual(theActualValue, "the expectation");
----
We can change the arguments around using Resharper by using the key combination 'Ctrl-Alt-Shift-ArrowKey' but you can only do this one line at a time which was a bit annoying as there were about 20 to change.
I got a bit bored of doing this after a while so I thought I'd look into whether it would be possible to do this with a 'Find & Replace'.
After a bit of trial and error this is what I've ended up with:
* Select all the areas of code that you want to change and press 'Ctrl-H'
* In the find box type: ~~~text \({.*}, {\".*\"} ~~~
* And in the replace box type: ~~~text (\2, \1 ~~~
The '{}' define a matching group of which we define two in this case and then switch them around. Visual Studio's regex seems a bit different than the one I'm used to - http://msdn.microsoft.com/en-us/library/2k3te2cs(VS.80).aspx[the reference list for the syntax is available on MSDN].
It's not too complicated and I'm sure there are edge cases where it wouldn't work but for the little case I had it did the job reasonably well. | null | null | [
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] | visual-studioresharper-changing-the-order-of-arguments | https://markhneedham.com/blog/2009/06/23/visual-studioresharper-changing-the-order-of-arguments |
false | 2009-06-15 20:03:34 | F#: Using C# extension methods | [
"f"
] | [
"fsharp"
] | An interesting thing I noticed about referencing C# libraries from F# is that you can't access C# extension methods on generic open types in the same way that you would be able to if you were using the library from C# code.
I came across this problem when playing around with the http://ayende.com/projects/rhino-mocks.aspx[Rhino Mocks framework] in some F# code.
I wrote a simple test to see whether I could get an expectation to work correctly, without paying any regard for the fact that you can't use all C# extension methods in the same way as you can from C# code!
[source,ocaml]
----
open Xunit
open Rhino.Mocks
type IFoo =
abstract Bar : string -> string
type Foo() =
interface IFoo with
member x.Bar (value) = value
type Baz(foo: IFoo) =
member x.Barry(value) = foo.Bar(value) |> ignore
[<Fact>]
let my_mocking_test () =
let foo = MockRepository.GenerateMock<IFoo>()
foo.Expect(fun f -> f.Bar("random")).Return("someValue")
let baz = new Baz(foo)
baz.Barry("random") |> ignore
foo.VerifyAllExpectations();
----
That code doesn't compile with lines 18 and 23 being the offending ones.
If we want to use Rhino Mocks' extension methods in our F# code we need to call them specifically. With a little exploration through Rhino Mocks I came up with the following code.
[source,ocaml]
----
...
[<Fact>]
let my_mocking_test () =
let foo = MockRepository.GenerateMock<IFoo>()
(RhinoMocksExtensions.Expect<IFoo, string>(foo, fun f -> f.Bar("random"))).Return("someValue") |> ignore
let baz = new Baz(foo)
baz.Barry("random") |> ignore
RhinoMocksExtensions.VerifyAllExpectations(foo)
----
It doesn't read particularly fluently although it does work. I imagine an equivalent extension method could be written in F# to get around the problem although I ended up not needing to do any mocking after I first wrote this code so I haven't looked into how to do that yet.
* Update *
I've updated this post to point out that this problem occurs when trying to use C# extension methods on open generic types rather than all C# extension methods, something which Matthew Podwysocki points out in the comments.
I had originally thought that you couldn't use any C# extension methods since they didn't show up on the Intellisense drop down in Visual Studio and I assumed they were just a language feature of C# 3.0.
As it turns out you can get the Intellisense by importing the 'System.Linq' namespace although if you want to use a C# extension method you will need to ensure the type has been evalualted which can sometimes mean you need to put brackets around the code.
For example:
[source,ocaml]
----
[1..5]. (* No extension methods will show up *)
([1..5]). (* All the extension methods that can be applied to IEnumerable show up *)
----
Under the covers the same thing seems to be happening as if we called the extension methods from C# code. Scott Hanselman has a http://www.hanselman.com/blog/HowDoExtensionMethodsWorkAndWhyWasANewCLRNotRequired.aspx[nice post which explains how this works]. | null | null | [
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] | f-using-c-extension-methods | https://markhneedham.com/blog/2009/06/15/f-using-c-extension-methods |
false | 2009-06-12 17:35:51 | Coding: Single Level of Abstraction Principle | [
"coding",
"slap"
] | [
"Coding"
] | One of the other useful principles for writing readable code that I've come across in the last year or so is the Single Level of Abstraction Principle.
I first came across the idea of writing code at the same level of abstraction in http://www.markhneedham.com/blog/2008/09/15/clean-code-book-review/[Uncle Bob's Clean Code] although I only learnt about the actual term in http://www.markhneedham.com/blog/2008/09/05/the-productive-programmer-book-review/[Neal Ford's The Productive Programmer].
As the name suggests the idea is that within a certain method we look to keep all the code at the same level of abstraction to help us read it more easily. It needs to be consistent with stuff around it otherwise it's really confusing as our brain tried to make the mental shift between thinking about higher level concepts and low level implementation details in the code.
While trying to understand the code which I wrote about in a http://www.markhneedham.com/blog/2009/06/11/coding-keep-methodvariable-names-positive/[previous post about keeping method names positive] we decided to extract each of the validation rules so that we could see in English what was going on.
[source,csharp]
----
private bool ValidPolicyNumber(string policyNumber)
{
var hasExpectedPrefix = policyNumber.Substring(0,5) == "POLIC";
var followedBy7Digits = Regex.IsMatch(policyNumber.Substring(6,7), "^[0-9]{7}$");
var hasLengthOf12 = policyNumber.Length == 12;
return hasExpectedPrefix && followedBy7Digits && hasLengthOf12;
}
----
Although there's more code in that second example I think it makes it more clear what's going on and if we're interested in the how then we can just read the assignments to each of the variables.
After we'd done this refactoring I suggested that perhaps we could inline the 'hasLengthOf12' variable since it didn't seem to be adding value as all it's doing is abstracting away the fact that we're calling the 'Length' properly on string to check the length.
The code would then read like this:
[source,csharp]
----
private bool ValidPolicyNumber(string policyNumber)
{
var hasExpectedPrefix = policyNumber.Substring(0,5) == "POLIC";
var followedBy7Digits = Regex.IsMatch(policyNumber.Substring(6,7), "^[0-9]{7}$");
return hasExpectedPrefix && followedBy7Digits && policyNumber.Length == 12;
}
----
http://twitter.com/davcamer[Dave] rightly pointed out that if we were to do this then we would be mixing code which said *what* made a valid policy with code that determined *how* we did this therefore violating the Single Level of Abstraction Principle.
The whole point of doing this for me is that we can keep less context in our head about the code and we can just read through the code and quickly understand what's going on.
An added benefit is that from my experience it helps to bring out subtle errors that we may have looked over when there was a mixture of levels of abstraction in the code.
I know this is a fairly simple example but it helped me to understand a bit more clearly what it actually means to code to this principle.
* Update *
As Dan points out in the comments the 'followedBy7Digits' variable could never be true. I had the example wrong so I've change it to how it was meant to be. | null | null | [
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] | coding-single-level-of-abstraction-principle | https://markhneedham.com/blog/2009/06/12/coding-single-level-of-abstraction-principle |
false | 2009-06-12 17:07:30 | Coding Dojo #17: Refactoring Cruise Control .NET | [
"coding-dojo"
] | [
"Coding Dojo"
] | After a couple of weeks of http://www.markhneedham.com/blog/2009/05/21/coding-dojo-15-smalltalk/[more experimental] http://www.markhneedham.com/blog/2009/05/29/coding-dojo-16-reading-sunit-code/[coding dojos] this week we decided to get back to some pure coding with the session being focused around doing some refactoring of the continuous integration server http://confluence.public.thoughtworks.org/display/CCNET/Welcome+to+CruiseControl.NET[Cruise Control .NET].
The overall intention of the refactoring we worked on is to try and introduce the concept of a 'ChangeSet' into the code base to represent the revisions that come in from source control systems that CC.NET integrates with.
== The Format
We had 6 people for the majority of the dojo so we resorted to the Randori style with each pair at the keyboard for 10 minutes before rotating.
http://twitter.com/davcamer[Dave] and I have been reading/trying out the http://blog.staffannoteberg.com/2008/02/22/pomodoro-technique-in-5-minutes/[Pomodoro technique] in our spare time recently so we decided to use Pomodoro's idea of reflecting on our work by stopping every 3 pairing sessions and discussing what we'd done and whether we wanted to vary the approach or keep going the same way.
== What We Learnt
* The most obvious place in the code where the 'ChangeSet' concept made sense was in the RssFeedPublisher which was taking a collection of modifications and then converting them back into the same revision format that the data was in when it came from the source control system. The https://bitbucket.org/davcamer/ccnet/src/tip/project/core/sourcecontrol/ISourceControl.cs[ISourceControl].GetModifications() method was the one that we needed to change if we wanted to introduce the changes which we started doing by changing the return type from being a modification array to an IEnumerable<Modificatiion>. The goal was to *drive towards a place where we could create a ChangeSet* and have that extend an IEnumerable<Modificatiion> so that we could easily get that into the code before working out how to remove the concept of a Modification. We wanted it to extend a more generic type than array since we didn't want to tie the ChangeSet class to something as concrete as an array. Even with seemingly minor change we still ended up taking around 40 minutes to get the code compiling again - we were very much leaning on the compiler to guide us on what to fix, a technique http://twitter.com/mfeathers[Michael Feathers] talks about in http://www.amazon.com/Working-Effectively-Legacy-Robert-Martin/dp/0131177052[Working Effectively with Legacy Code]. It would be interesting to see how a refactoring like this would work in a dynamic language like Ruby where you would lose the compiler support but still have the ability to run your tests to help guide you to the places that need fixing.
* There were 963 usages of Modification in the code so we didn't have the option of just deleting it straight away! I've not yet worked on a code base this size so it was interesting for me to see how we were forced into a *smaller steps approach* by the code.
* After 3 pairing sessions we discussed the approach that we were taking which had led us to a situation where the code still wasn't compiling. The alternative approach was to *go in even smaller steps and make another method on ISourceControl for 'GetModfications' with a different signature* and then delegate from the new method to the existing one. The problem with this was that there were 20 classes which implemented ISourceControl so we would have had to implement the delegation in all of these or create an abstract base class which did the delegation and then get all the existing implementors to extend the case class instead. We decided to keep going with our original approach for 3 more pairs as it seems like we were quite close and it wasn't clear whether changing the approach would give us significant benefits.
* The main compilation errors in the code were actually tests which no longer compiled due to the fact that IEnumerable doesn't have a 'Length' property on it whereas array does. CC.NET is a .NET 2.0 code base so we weren't able to introduce http://msdn.microsoft.com/en-us/library/system.linq.enumerable_members.aspx[LINQ] into the code which would have made it really easy to just make use of the 'Count' extension method instead of casting the results from 'GetModification' back to an array in the tests for the time being. We accidentally came across the *ICollection interface towards the end which perhaps would have been a better choice than IEnumerable* as it would have allowed us to avoid the nasty casting and just make use of the Count property on ICollection instead.
== For next time
* The pace this week was a bit slower but it definitely seemed to keep people more involved so we're going to try and keep it more focused on the coding rather than experimentation. Possibly a refactoring exercise on some Java code as we have more people using that on their projects. | null | null | [
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] | coding-dojo-17-refactoring-cruise-control-net | https://markhneedham.com/blog/2009/06/12/coding-dojo-17-refactoring-cruise-control-net |
false | 2009-06-14 00:37:01 | F#: Overlapping fields in record types | [
"f",
"records"
] | [
"fsharp"
] | A problem which has confused me for a while is how to create instances of record types whose fields overlap with another record defined further down in an F# file.
The most recently defined record seems to take precedence even if it has more fields than a record defined earlier and you don't specify all of those fields in your record creation attempt.
For example, if I have the following two record types:
[source,ocaml]
----
type Mark = { Value : string }
type SpecificMark = { Value: string; AnotherValue : int }
----
I thought it would be possible to create an instance of 'Mark' by doing this:
[source,ocaml]
----
let mark = { Value = "mark" }
----
But what I actually got is the following compilation error:
[source,text]
----
No assignment given for field 'AnotherValue'
----
It turns out that you need to be more explicit about the fact that you want to create the 'Mark' record type.
Using the pre F# 1.9.16 syntax we would use the following http://www.markhneedham.com/blog/2009/05/19/f-object-expressions/[object expression]:
[source,ocaml]
----
let mark = { new Mark with Value = "mark" }
----
But versions after that indicate that this syntax is deprecated and we need to do something more like this:
[source,ocaml]
----
let mark = { new Mark with member self.Value = "mark" }
----
Which leads to the following error:
[source,text]
----
error FS0191: Only simple bindings of the form 'id = expr' can be used in construction expressions
----
This has http://cs.hubfs.net/forums/thread/10412.aspx[also been mentioned on the hubfs forums] although there is no suggestion as for why this syntax would be invalid - it seems like it should work to me.
Luckily there are a couple of other ways to get an instance of the 'Mark' type:
[source,ocaml]
----
let (m:Mark) = { Value = "mark" }
----
[source,ocaml]
----
let mark = {Value = "mark" } : Mark
----
Both of which require less typing anyway! | null | null | [
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] | f-overlapping-fields-in-record-types | https://markhneedham.com/blog/2009/06/14/f-overlapping-fields-in-record-types |
false | 2009-06-22 23:39:07 | F#: Continuation Passing Style | [
"f",
"continuation-passing-style",
"continuations"
] | [
"fsharp"
] | I recently came across the idea of continuations while reading http://www.markhneedham.com/blog/2009/05/24/real-world-functional-programming-book-review/[Real World Functional Programming] and Wes Dyer has http://blogs.msdn.com/wesdyer/archive/2007/12/22/continuation-passing-style.aspx[a blog post where he explains continuations in more detail and also talks about the idea of using a continuation passing style in languages] which don't support Call/CC (Call with Current continuation).
As I understand it we can achieve a continuation passing style of programming by passing in the bit of code that we went executed next (i.e. the continuation) as an argument to a function.
Wes has a series of examples in C# so I thought I'd see what they look like in F#:
The first example is a function 'Identity' which originally returns the value it is given before the calling function prints it to the screen.
[source,ocaml]
----
let identity value = value
printfn "%s" (identity "mark")
----
In CPS the function 'identity' would take in the printfn statement as a continuation:
[source,ocaml]
----
let identity value k = k value
identity "mark" (printfn "%s")
----
The type of identity has change from "'a \-> 'a" to "'a \-> ('a \-> 'b) \-> 'b" which in our example is "string \-> (string \-> unit) \-> unit).
The next example is to convert a 'Max' function to CPS style:
[source,ocaml]
----
let max m n = if m > n then m else n
printfn "%d" (max 2 3)
----
That would become:
[source,ocaml]
----
let max m n k = if m > n then k m else k n
max 2 3 (printfn "%d")
----
In both of these cases the "printfn.." part of the statement implicitly defines a function which takes in a value of 'string' in the first case and 'int' in the second.
We could just have easily written the code like this:
[source,ocaml]
----
let max m n k = if m > n then k m else k n
max 2 3 (fun number -> printfn "%d" number)
----
I found the next example a bit tricky as it involves passing the continuation on to another function.
We originally have the following:
[source,ocaml]
----
let g n = n + 1
let f n = g(n + 1) + 1
printfn "%d" (f(1) + 1)
----
This becomes:
[source,ocaml]
----
let g n k = k(n+1)
let f n k = g (n + 1) (fun x -> k(x + 1))
f 1 (fun n -> printfn "%d" (n + 1))
----
The thing I found strange when trying to think about how to do this is that anything which would happen after the initial function call needs to be passed into the continuation instead.
You need to always think about what happens next instead of just thinking about the result that needs to be calculated. At the moment I think I'm more used to a sequential flow of operations but I'm sure that will change.
The same applied for the last example, factorial:
[source,ocaml]
----
let rec factorial n =
if n = 0
then 1
else n * factorial (n-1)
----
Apply the same idea of putting any additional calculations outside the function call into the continuation we end up with:
[source,ocaml]
----
let rec factorial n k =
if n = 0
then k(1)
else factorial (n-1) (fun x -> k(n*x))
----
The first factorial I define here is http://cs.hubfs.net/forums/permalink/8022/8022/ShowThread.aspx#8022[not tail recursive] as we still need to multiply the result of all the recursive calls by n at the end, meaning that the compiler can't optimise this code to just keep the latest call to the function on the stack.
The usual way I've seen to get around this is to thread an accumulator to an inner function inside factorial which would keep the running total of the factorial calculation but passing continuations is another way of doing this as we are passing on all the data needed to factorial every time we call it.
Looking at the C# via IL code version of these two functions we get the following:
[source,csharp]
----
public static int factorial(int n)
{
if (n == 0)
{
return 1;
}
return (n * factorial(n - 1));
}
----
[source,csharp]
----
public static a factorial2<a>(int n, FastFunc<int, a> k)
{
while (n != 0)
{
k = new factorial2@103<a>(n, k);
n--;
}
return k.Invoke(1);
}
----
The second one has been converted into a while loop which I hadn't realised was what happened with tail recursive calls until I came across http://blogs.msdn.com/jomo_fisher/archive/2007/09/19/adventures-in-f-tail-recursion-in-three-languages.aspx[Jomo Fisher's post about tail recursion].
I'm still getting the hang of this and would definitely agree with Wes' comment:
____
CPS turns a program inside-out. In the process, the programmer may feel that his brain has been turned inside-out as well.
____
When I first read about continuations they sounded a bit similar to callbacks and Wes defines a callback as being an 'explicity-passed continuation' which is effectively what we are doing here. The difference for me is that we are passing the continuation around whereas when I've used a callback it's typically executed straight away.
http://www.williamcaputo.com/archives/000285.html[William Caputo has also been playing around with continuations in C#] and has some interesting thoughts as well. | null | null | [
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] | f-continuation-passing-style | https://markhneedham.com/blog/2009/06/22/f-continuation-passing-style |
false | 2009-12-03 16:27:29 | Book Club: Working Effectively With Legacy Code - Chapter 11 (Michael Feathers) | [
"book-club"
] | [
"Book Club"
] | In our latest technical book club we discussed chapter 11 - 'I Need to Make a Change. What Methods Should I Test?' - of Michael Feathers' 'http://www.amazon.com/gp/product/0131177052?ie=UTF8&tag=marneesblo-20&linkCode=as2&camp=1789&creative=390957&creativeASIN=0131177052[Working Effectively With Legacy Code]'.
In this chapter Feathers covers some techniques which allow us to work out which parts of the code we need to write tests around when we make changes.
These are some of my thoughts and our discussion of the chapter:
* Feathers starts off the chapter by introducing the idea of *effect sketching* which I've been trying out recently both on the projects I've been working on and with the http://www.markhneedham.com/blog/2009/11/04/reading-code-unity/[Unity dependency injection container]. The idea is that we create a diagram which shows the effect that changing different fields and methods will have on the rest of the class and then based on this we can see where we need to create a safety net of tests for any given change. It seems like this type of diagram would also be quite useful for identifying when a class has more than one responsibility because you would end up with several mini unconnected effect sketches within the main one.
* Feathers suggests that we should look to write *characterisation tests* around legacy code. These are written a little differently to TDD's tests because we make the assertion match what the code is currently doing. The idea is to document what the system is doing now. We might come across 'bugs' while doing this but we wouldn't necessarily change the tests to verify how the code 'should' be until we find out what the effect of doing that would be. We want to write enough of these tests that we feel confident that we have a good enough safety net to allow us to change the code.
* There are some interesting ideas about encapsulation towards the end of the chapter where Feathers considers the *trade off between ensuring test coverage and encapsulation*.
+
____
Breaking encapsulation can make reasoning about our code harder, but it can make it easier if we end up with good explanatory tests afterward. \... Encapsulation and test coverage aren't always at odds, but when they are, I bias towards test coverage. Often it can help me get more encapsulation later. Encapsulation isn't an end in itself; it is a tool for understanding.
____
+
I find this is sometimes quite a big barrier to break down because people are often reluctant to change code to make it more testable. That's sometimes a valid concern but with legacy code not so much. | null | null | [
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] | book-club-working-effectively-with-legacy-code-chapter-11-michael-feathers | https://markhneedham.com/blog/2009/12/03/book-club-working-effectively-with-legacy-code-chapter-11-michael-feathers |
false | 2009-12-20 10:09:30 | F#: Word Count using a Dictionary | [
"f"
] | [
"fsharp"
] | Having spent some time unsuccessfully trying to make http://www.markhneedham.com/blog/2009/12/18/f-word-count-a-somewhat-failed-attempt/[my F# attempt at the word count problem] work I decided to follow the lead of the other examples I've read and make use of a Dictionary to keep count of the words.
I originally thought that I might be having a problem with the downloading of the files and storing of those strings in memory so I tried to change that bit of code to be lazily evaluated:
[source,ocaml]
----
let downloadFile path =
lazy(use streamReader = new StreamReader(File.OpenRead path)
streamReader.ReadToEnd())
----
That didn't seem to make much difference though and it seemed like the StackOverflowException was happening on the 'List.fold' line:
[source,ocaml]
----
let wordCount = files >>
List.map downloadFile >>
List.map words >>
List.fold (fun acc x -> Seq.append acc x) Seq.empty >>
Seq.groupBy (fun x -> x) >>
Seq.map (fun (value, sequence) -> (value, Seq.length sequence))
----
I couldn't see a way of changing the solution such that the current approach wouldn't need that line so I rewrote part of it ending up with the following solution:
[source,ocaml]
----
#light
#r "FSharp.PowerPack"
open System
open System.IO
open System.Text.RegularExpressions
open System.Collections.Generic
let (|File|Directory|) path = if(Directory.Exists path) then Directory(path) else File(path)
let getFileSystemEntries path = Directory.GetFileSystemEntries path |> Array.to_list
let files path =
let rec inner fileSystemEntries files =
match fileSystemEntries with
| [] -> files
| File path :: rest -> inner rest (path :: files)
| Directory path :: rest -> inner (List.append rest (getFileSystemEntries path)) files
inner (getFileSystemEntries path) []
let download path = using (new StreamReader(File.OpenRead path)) (fun reader -> reader.ReadToEnd())
let writeTo (path:string) f = using (new StreamWriter(path)) (fun writer -> f writer)
let words input = Regex.Matches(input, "\w+") |> Seq.cast |> Seq.map (fun (x:Match) -> x.Value.ToLower())
let apply (dict:Dictionary<string,int>) key f = if(dict.ContainsKey(key)) then dict.[key] <- f dict.[key] else dict.[key] <- f 0
let startTime = DateTime.Now
let dict = new Dictionary<string, int>()
files "Z:\\20_newsgroups" |> List.iter (fun file -> download file |> words |> Seq.iter (fun word -> apply dict word ((+) 1) ))
printfn "Writing counts in alphabetical order"
writeTo "C:\\results\\counts-alphabetical-fsharp.txt" (fun out ->
dict |> Seq.sortBy (fun x -> x.Key) |> Seq.iter (fun entry -> out.WriteLine(entry.Key + " " + entry.Value.ToString())))
printfn "Writing counts in descending order"
writeTo "C:\\results\\counts-descending-fsharp.txt" (fun out ->
dict |> Seq.sortBy (fun x -> x.Value * -1) |> Seq.iter (fun entry -> out.WriteLine(entry.Key + " " + entry.Value.ToString())))
let endTime = DateTime.Now
printfn "Finished in: %d seconds" (endTime - startTime ).Seconds
----
As I wrote about previously I found out that I could use the 'using' function instead of the 'use' keyword with the 'StreamWriter' and 'StreamReader' so those bits of code are a bit simplified.
The way of interacting with dictionaries in F# doesn't seem as nice as in Ruby so I've ended up with the somewhat verbose bit of code on line 23. Is there a cleaner way of doing that?
By using a Dictionary I think it's now more difficult to parallelise the counting up of the words which was something I thought might be possible when I first came across the problem.
This seems like the perfect problem for the http://en.wikipedia.org/wiki/MapReduce[MapReduce] approach although I'm not quite sure about the implementation details.
My thinking is that we'd have a Dictionary for each node/actor and it would sum up the words in its file before passing the result to another actor which would be responsible for taking all the dictionaries and accumulating the word counts?
This was an interesting problem for showing what happens if you try to store too much data in memory and it's something that I've not come across before because I don't typically work with data sets that are this big. | null | null | [
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false | 2009-12-20 03:52:12 | Book Club: Working Effectively With Legacy Code - Chapters 12 & 13 (Michael Feathers) | [
"book-club"
] | [
"Book Club"
] | In the last Sydney book club that I attended before I moved back to the UK we discussed Chapters 12 and 13 of Michael Feathers' 'http://www.amazon.com/gp/product/0131177052?ie=UTF8&tag=marneesblo-20&linkCode=as2&camp=1789&creative=390957&creativeASIN=0131177052[Working Effectively With Legacy Code]'
http://lizdouglass.wordpress.com[Liz] has taken over the http://lizdouglass.wordpress.com/2009/12/10/book-club-working-effectively-with-legacy-code-–-chapters-14-15-and-16-michael-feathers/[summarising of the book club] now that I'm not there so if you want to keep on reading about the book club Liz's blog is the place to go!
== Chapter 12 - I Need to Make Many Changes in One Area. Do I Have to Break Dependencies for All the Class Involved?
One of the ideas suggested in this chapter is that *when writing tests we should try and write these as close to the change point as possible*. Ideally we want to write a test directly against the method that we're changing but sometimes that isn't possible.
In this case Feathers suggests writing a test at the closest interception point (place to detect effects) and then changing the code at the change point to ensure that the test fails as expected. Tony Pitluga describes this approach in more detail in http://tonypitluga.blogspot.com/2009/05/gain-confidence-before-you-refactor.html[his post about gaining confidence before refactoring].
When working out where we need to write our tests, Feathers suggests that we need to look for *pinch points* i.e. methods from which we can detect changes in other methods in a class.
Feathers has a nice analogy where he compares this approach to 'walking several steps into a forest and drawing a line, saying "I own all of this area".'
We can then work with the code in that area of the code base with some degree of safety until we've got the code into a better state at which point we might decide the pinch point tests are no longer needed.
== Chapter 13 - I Need to Make a Change, but I Don't Know What Tests to Write
Feather suggests writing http://www.markhneedham.com/blog/2009/12/03/book-club-working-effectively-with-legacy-code-chapter-11-michael-feathers/[characterisation tests] - tests to document what the system currently does - for the parts of the code base that we're currently working on.
This is the approach that http://intwoplacesatonce.com/[Dave] encouraged on the last project I worked on - trying to write tests for code that we're not currently working on is a bit risky since we're not really sure what the behaviour is supposed to be. In addition we don't get much benefit from them since we're not changing anything in that area.
Feathers also points out that we shouldn't try to fix any 'bugs' that we come across while writing these tests - we should instead raise them and see if anything needs to be done. I remember watching an Uncle Bob presentation where he described how he had 'fixed a bug' which actually broke all dependent systems which relied on the bug being there. This is the situation we're trying to avoid!
Another approach suggested if we're having difficulty testing a large chunk of code is to refactor it into smaller methods and then test directly against those instead. I think this works well as a short term approach until we can test more easily from elsewhere. | null | null | [
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] | book-club-working-effectively-with-legacy-code-chapters-12-13-michael-feathers | https://markhneedham.com/blog/2009/12/20/book-club-working-effectively-with-legacy-code-chapters-12-13-michael-feathers |
false | 2009-12-18 02:58:34 | F#: Word Count - A somewhat failed attempt | [
"f"
] | [
"fsharp"
] | I came across http://blogs.sourceallies.com/2009/12/word-counts-example-in-ruby-and-scala/[Zach Cox's word count problem] via http://twitter.com/samaaron/status/6701378774[Sam Aaron] and http://twitter.com/olabini/status/6705741285[Ola Bini's] twitter streams and I thought it'd be interesting to try it out in F# to see what the solution would be like.
The solution needs to count word frequencies from a http://kdd.ics.uci.edu/databases/20newsgroups/20newsgroups.html[selection of newsgroup articles].
I wanted to see if it was possible to write it in F# without using a map to keep track of how many of each word had been found.
My thinking was that I would need to keep all of the words found and then calculate the totals at the end.
After a bit of fiddling this is the version I ended up with:
word-count.fsx
[source,ocaml]
----
#light
open System
open System.IO
open System.Text.RegularExpressions
let (|File|Directory|) path = if(Directory.Exists path) then Directory(path) else File(path)
let getFileSystemEntries path = Directory.GetFileSystemEntries path |> Array.to_list
let files path =
let rec inner fileSystemEntries files =
match fileSystemEntries with
| [] -> files
| File path :: rest -> inner rest (path :: files)
| Directory path :: rest -> inner (List.append rest (getFileSystemEntries path)) files
inner (getFileSystemEntries path) []
let downloadFile path =
use streamReader = new StreamReader(File.OpenRead path)
streamReader.ReadToEnd()
let words input= Regex.Matches(input, "\w+") |> Seq.cast |> Seq.map (fun (x:Match) -> x.Value.ToLower())
let wordCount = files >>
List.map downloadFile >>
List.map words >>
List.fold (fun acc x -> Seq.append acc x) Seq.empty >>
Seq.groupBy (fun x -> x) >>
Seq.map (fun (value, sequence) -> (value, Seq.length sequence))
let writeTo (path:string) (values:seq<string * int>) =
use writer = new StreamWriter(path)
values |> Seq.iter (fun (value,count) -> writer.WriteLine(value + " " + count.ToString()))
let startTime = DateTime.Now
let count = wordCount "Z:\\20_newsgroups"
printfn "Writing counts in alphabetical order"
count |> Seq.sort |> writeTo "C:\\results\\counts-alphabetical-fsharp.txt"
printfn "Writing counts in descending order"
count |> Seq.sortBy (fun (_, count) -> count * -1) |> writeTo "C:\\results\\counts-descending-fsharp.txt"
let endTime = DateTime.Now
printfn "Finished in: %d seconds" (endTime - startTime).Seconds
----
The problem is that this version results in a StackOverFlow exception when I try to execute it with all the newsgroup articles although it does work correctly if I select just one of the folders.
From what I can tell the exception happens on line 24 when I get the text out of each of the files and store it in the list.
I tried changing this bit of code so that instead of doing that I combined the 'words' and 'downloadFile' functions so that the whole string wouldn't be saved but this doesn't seem to help that much. The exception just ended up happening a bit further down.
I'm not sure if it's possible to make this work by making use of lazy collections - I'm not that familiar with those yet so I"m not sure how to do it - or if this approach is just doomed!
Despite the fact it doesn't quite work there were some interesting things I noticed while playing with this problem:
* At one stage http://twitter.com/markhneedham/statuses/6744178046[I was trying to deal with a list of sequences] whereby I had a list of sequences of words for each of the newsgroup articles. I found this really difficult to reason about as I was writing a 'List.map' and then a 'Seq.map' inside that. I originally had the 'List.fold (fun acc x \-> Seq.append acc x) Seq.empty' line happening later on in that composition of functions such that I grouped all the words and then counted how many there were before folding down into a single sequence. I realised this didn't make much sense and it would be much easier to just go to the sequence earlier on and make the code easier to follow.
* I've previously written about http://www.markhneedham.com/blog/2009/07/12/f-wrapping-net-library-calls/[wrapping .NET library calls] and I was doing this quite a lot when I started writing this code. For example I had written a function called 'isDirectory' which wrapped 'Directory.Exists' which I wrote more out of habit than anything else but it doesn't really add much value. I think when we're talking about wrapping static methods this is probably always the case. It's when we want to call a method on a C# object that the wrapping approach can be helpful.
* I quite like the Ruby way of writing to a file\... ~~~ruby open("counts-descreasing-ruby", "w") do |out| counts.sort { |a, b| b[1] \<=> a[1] }.each { |pair| out << "#{pair[0]}\t#{pair[1]}\n" } end ~~~ \...so I thought I'd see what it would look like to change my 'writeTo' function to be more like that: ~~~ocaml let writeTo (path:string) (f: StreamWriter \-> Unit) = use writer = new StreamWriter(path) f writer ~~~ ~~~ocaml writeTo "C:\\results\\counts-alphabetical-fsharp.txt" (fun out \-> count |> Seq.sort |> Seq.iter (fun (v,c) \-> out.WriteLine(v + " " + c.ToString()))) ~~~ I'm not sure it reads as well as the original version - the writing to file seems to becomes more prominent in this version than the data being written to it.
If anyone has any ideas about how I can get this not to blow up that would be cool!
These are some of the other solutions that I've come across:
* http://www.bestinclass.dk/index.php/2009/12/clojure-vs-ruby-scala-transient-newsgroups/comment-page-1/#comment-1234[Lau B. Jensen comments on Zach's post and provides an additional version in Clojure]
* http://gist.github.com/257079[A version in Ruby by Sam Aaron]
* https://gist.github.com/257236/e08eed68c89fef6c6ae1f857a8190bc3b5e3c278[A version in Ioke by Sam Aaron]
* https://gist.github.com/257236/4b9ce470fda49282cc3bc2d89617506062811035[Ola Bini's slightly modified version of Sam Aaron's Ioke version]
* http://gist.github.com/257164[A version by Shot in Ruby] | null | null | [
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] | f-word-count-a-somewhat-failed-attempt | https://markhneedham.com/blog/2009/12/18/f-word-count-a-somewhat-failed-attempt |
false | 2009-12-16 06:15:14 | The Computer Scientist as Toolsmith - Fred Brooks | [
"software-development"
] | [
"Software Development"
] | I've come across http://elegantcode.com/2009/12/01/is-software-craftsmanship-to-gender-specific/[a couple] http://www.devchix.com/2009/11/28/craftsmanship-without-the-man/[of posts] recently talking about the gender specificness of the term 'Software Craftsman' and Victoria suggests that the term 'Codesmith' would be a more appropriate name to use.
I'm not that bothered what the name is but I was reading the transcript of Fred Brooks' acceptance speech for winning the ACM Allen Newell Award in 1994 titled 'http://www.cs.unc.edu/~brooks/Toolsmith-CACM.pdf[The Computer Scientist as Toolsmith]' which has some interesting ideas about what our role should be.
These were some of the parts that I found interesting in the talk:
* I quite liked the following quote and it seems to cover the same type of ground that we try to cover with the agile approach to software development with respect to *writing software that actually provides value to our users*:
+
____
If we perceive our role aright, we then see more clearly the proper criterion for success: a toolmaker succeeds as, and only as, the users of his tool succeed with his aid.
____
+
The article goes on to say the following:
+
____
\...we tend to forget our users and their real problems, climbing into our ivory towers to dissect tractable abstractions of these problems , abstractions that may have left behind the essence of the real problem.
____
+
I also came across an interesting blog post by Rob Bowley where he http://blog.robbowley.net/2009/12/14/something-in-agile-needs-fixing/[discusses some of the limitations he's noticed in the agile approach with respect to addressing the needs of our customers] which seems to cover similar ground.
* He also makes some interesting points around interdisciplinary collaboration:
+
____
There are real costs associated with any professional collaboration, and interdisciplinary collaborations have some unique costs. I find that our teams spend about a quarter of our professional effort on routine work that supports our collaborators
____
+
I'm not sure whether that last statistic stands true for collaboration between software development teams and the business but a fairly common objection from the business is that they don't have the time to interact with the software guys and that we should just get on build what they want. Rob's post seems to suggest that we're not collaborating in a particularly effective way and Brooks goes on to suggest that we need to do some preparation before interacting with these guys:
+
____
Our Ph.D. students often take introductory courses in the using disciplines, and they always take reading courses from our collaborators to prepare them for their dissertation work. *One need not become an expert in the partner's field, of course, but one does need to learn the basic principles, the vocabulary, and the partner's research objectives*.
____
+
I wonder if this is where we sometimes go wrong - we're focused on the software solution rather than stepping back and working out our customers' real problems and helping them solve those. This part of the article also reminded me of http://www.markhneedham.com/blog/2009/03/13/qcon-london-2009-what-ive-learned-about-ddd-since-the-book-eric-evans/[comments made by Eric Evans in his QCon talk about not wasting domain experts time].
* In one part of the article Brooks talks about artificial intelligence, suggesting:
+
____
\...intelligence amplifying systems can, at any given level of available systems technology, beat AI systems. That is, a machine and a mind can beat a mind-imitating machine working by itself
____
+
This seems quite similar to an idea that I read in http://www.markhneedham.com/blog/2008/12/09/taiichi-ohnos-workplace-management-book-review/[Taaichi Ohno's Workplace Management] whereby we look to automate processes but not just for the sake of automation. We should automate so that the human can do their job more effectively. On the projects I've worked on we often make use of automation to provide us with code metrics but a human would then analyse those and work out whether we need to make any changes to the way that we do things based on those metrics. Google seem to be going with http://gojko.net/2009/12/07/improving-testing-practices-at-google/[an even more automated approach with respect to understanding which tests are useful as Marcus Striebeck described in a talk at XP Day] and since it seems to be working well for them, perhaps we haven't yet worked out where the usefulness of a machine ends and a human is required. | null | null | [
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] | the-computer-scientist-as-toolsmith-fred-brooks | https://markhneedham.com/blog/2009/12/16/the-computer-scientist-as-toolsmith-fred-brooks |
false | 2009-12-16 22:08:22 | Coding: Naming | [
"coding"
] | [
"Coding"
] | Sarah Taraporewalla recently wrote http://sarahtaraporewalla.com/thoughts/design/the-importance-of-words[an interesting post about the importance of words with respect to the way that we use them in our code] and it reminded me of some conversations I've had with http://intwoplacesatonce.com/[Dave Cameron] about the importance of creating a shared understanding of the different types/objects in the systems that we build.
On a few projects that I've worked on where we didn't have a common understanding of what different concepts in the domain should be I noticed that there was a reluctance to make changes to class names.
Dave pointed out that this was probably because people have different maps in their head about what different domain concepts actually mean and changing class names ruins that map and therefore people's mechanism for remembering what different classes do.
== So how can we identify the real names?
If we can come up with a good enough way to name the types that exist in our system such that everyone has the same understanding then the mapping problem disappears.
Domain Driven Design suggests the http://devlicio.us/blogs/casey/archive/2009/02/09/ddd-the-ubiquitous-language.aspx[ubiquitous language] as a way to solve this problem, and while getting the language of the business into our code is the best way that I've come across for doing this sometimes it's difficult to get this sort of access to domain experts to make it possible.
In that situation I think just listening to how we talk about the code is enough to identify problem areas.
Typically if a concept isn't described by the name that it's been given then the person will describe the actual concept in the words they use to explain what they're actually referring to.
The neat thing about a ubiquitous language is that if we name things in such a way that everyone does have the same understanding then if we decide later that we need a new name by definition the new name will do a better name of describing an object than the old one.
Names are there to make it easier for us to talk and reason about code - if they're not doing that then we need to change them until they do. | null | null | [
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false | 2009-12-10 22:14:26 | TDD: Big leaps and small steps | [
"tdd"
] | [
"Testing"
] | About a month ago or so http://blog.extracheese.org/2009/11/how_i_started_tdd.html[Gary Bernhardt wrote a post showing how to get started with TDD] and while the post is quite interesting, several comments on the post pointed out that he had jumped from iteratively solving the problem straight to the solution with his final step.
Something which I've noticed while solving algorithmic problems in couple of different functional programming languages is that the test driven approach doesn't work so well for these types of problems.
Dan North points out something similar in an http://vimeo.com/7722342[OreDev presentation where he talks about writing a BDD framework in Clojure].
To paraphrase:
____
If you can't explain to me where this approach breaks down then you don't know it well enough. You're trying to sell a silver bullet. The classic failure mode for iterative development is the big algorithm case. That's about dancing with the code and massaging it until all the test cases pass.
____
http://blog.objectmentor.com/articles/2009/10/08/tdd-triage[Uncle Bob also points this out] while referring to the way we develop code around the UI:
____
There is a lot of coding that goes into a Velocity template. But to use TDD for those templates would be absurd. The problem is that I'm not at all sure what I want a page to look like. I need the freedom to fiddle around with the formatting and the structure until everything is just the way I want it. Trying to do that fiddling with TDD is futile. Once I have the page the way I like it, then I'll write some tests that make sure the templates work as written.
____
I think the common theme is that TDD works pretty well when we have a rough idea of where we intend to go with the code but we just don't know the exact path yet. We can take *small steps* and incrementally work out exactly how we're going to get there.
When we don't really know how to solve the problem - which more often than not seems to be the case with algorithmic type problems - then at some stage we will take a *big leap* from being nowhere near a working solution to the working solution.
In those cases I think it still makes sense to have some automated tests both to act as regression to ensure we don't break the code and to tell us when we've written the algorithm correctly.
An example of a problem where TDD doesn't work that well is solving the http://www.markhneedham.com/blog/2009/07/04/coding-dojo-19-groovy-traveling-salesman-variation/[traveling salesman problem].
In this case the solution to the problem is the implementation of an algorithm and it's pretty difficult to get there unless you actually know the algorithm.
During that dojo http://blog.rufiao.com/[Julio] actually spent some time working on the problem a different way - by implementing the algorithm directly - and he managed to get much further than we did.
It seems to me that perhaps this explains why although TDD is a useful design technique it's not the only one that we should look to use.
When we have worked out where we are driving a design then TDD can be quite a useful tool for working incrementally towards that but it's no substitute for taking the time to think about what exactly we're trying to solve. | null | null | [
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] | tdd-big-leaps-and-small-steps | https://markhneedham.com/blog/2009/12/10/tdd-big-leaps-and-small-steps |
false | 2009-12-19 02:52:15 | You and Your Research - Richard Hamming | [
"software-development"
] | [
"Software Development"
] | Another paper that I read on my Sydney to London flight was one titled 'http://www.cs.virginia.edu/~robins/YouAndYourResearch.html[You and Your Research]' by Richard Hamming.
It's a transcript of a talk that Richard Hamming gave to Bellcore employees at the Morris Research and Engineering Centre in 1986.
The talk is aimed at computer science researchers and Hamming describes ways for them to do the best research that they can. I think several of the ideas in the talk relate to software development as well.
These were some of the bits I found interesting:
* Hamming makes an observation about working conditions which I thought was quite interesting:
+
____
So ideal working conditions are very strange. The ones you want aren't always the best ones for you.
____
+
From what I've noticed this is true in software development too. As a contrived example, the 'ideal' software project would have unlimited time and money but that's never the case so we have to find ways to deal with the fact that we have to work within that framework. One of the benefits of this is that we try only to develop the features which are the most important rather than absolutely everything which might be the case if we didn't have that constraint. I'm inclined to believe that when we're working in a difficult environment we have more freedom to try things out because what's currently being tried is probably not working anyway. This seems to be the type of situation where innovation can happen.
* Hamming seems to touch on the idea of 10,000 hours of practice to achieve expertise that http://www.psy.fsu.edu/faculty/ericsson/ericsson.exp.perf.html[J. Anders Ericcsson has researched] and http://www.markhneedham.com/blog/2009/01/06/outliers-book-review/[Malcolm Gladwell popularised]:
+
____
On this matter of drive Edison says, ``Genius is 99% perspiration and 1% inspiration.'' He may have been exaggerating, but the idea is that solid work, steadily applied, gets you surprisingly far. The steady application of effort with a little bit more work, intelligently applied is what does it. That's the trouble; drive, misapplied, doesn't get you anywhere\...the misapplication of effort is a very serious matter. Just hard work is not enough - it must be applied sensibly.
____
+
This seems to cover the same type of ground that http://www.markhneedham.com/blog/2008/12/29/talent-is-overrated-book-review/[Geoff Colvin covers with the idea of deliberate practice] where we should always look to practice something which is a bit beyond our current ability. That way we're always improving.
* I really liked the following part of the article:
+
____
But most great scientists are well aware of why their theories are true and they are also well aware of some slight misfits which don't quite fit and they don't forget it. Darwin writes in his autobiography that he found it necessary to write down every piece of evidence which appeared to contradict his beliefs because otherwise they would disappear from his mind.
____
+
I often forget that there are other ways of solving problems than the ways I currently use and it's always good to read about people being successful with http://blog.edgecase.com/2009/6/2/a-rant-about-testing[different] http://blogs.msdn.com/cashto/archive/2009/03/31/it-s-ok-not-to-write-unit-tests.aspx[approaches]. That way we can keep questioning what we're doing rather than just blindly doing so.
* He also talks about the idea of bouncing ideas of other people because they will get you to think about the idea in different ways:
+
____
What you want to do is get that critical mass in action; ``Yes, that reminds me of so and so,'' or, ``Have you thought about that or this?'' When you talk to other people, you want to get rid of those sound absorbers who are nice people but merely say, ``Oh yes,'' and to find those who will stimulate you right back.
____
+
I think this is where something like a http://www.markhneedham.com/blog/category/book-club/[technical book club] can be invaluable. On every single paper or chapter we read in the ThoughtWorks Sydney book club others had different/better ideas than I did and it was really useful for showing me perspectives that I hadn't even thought of. In 'http://www.markhneedham.com/blog/2008/10/06/pragmatic-learning-and-thinking-book-review/[Pragmatic Learning and Thinking]' Andy Hunt suggests that whenever we read something we should try and explain the idea to a peer to see how well we understand the material and to get other ideas that we hadn't thought of. I'd really recommend this approach.
* There's also some interesting advice about giving presentations:
+
____
The technical person wants to give a highly limited technical talk\...the audience wants a broad general talk and wants much more background than the speaker is willing to give. As a result, many talks are ineffective. \... You should paint a general picture to say why it's important, and then slowly give a sketch of what was done\...the tendency is to give a highly restricted, safe talk; this is usually ineffective. Furthermore, many talks are filled with far too much information. So I say this idea of selling is obvious.
____
+
This is very similar to the advice Dan North gives. He suggests that three ideas/new things in a talk is all that people will be able to remember and anything more than this is a bit overwhelming.
There's certainly other interesting ideas in this paper but those were some of the bits that stood out for me. Worth reading. | null | null | [
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] | you-and-your-research-richard-hamming | https://markhneedham.com/blog/2009/12/19/you-and-your-research-richard-hamming |
false | 2009-12-19 10:33:57 | F#: The use keyword and using function | [
"f"
] | [
"fsharp"
] | While I was playing around with http://www.markhneedham.com/blog/2009/12/18/f-word-count-a-somewhat-failed-attempt/[the little F# script that I wrote to try and solve the word count problem] I noticed that in a couple of places I had used the 'http://msdn.microsoft.com/en-us/library/dd233240(VS.100).aspx[use]' keyword when dealing with resources that needed to be released when they'd been used.
Using the 'use' keyword means that the 'Dispose' method will be called on the resource when it goes out of scope.
The two examples were 'StreamWriter' and 'StreamReader':
[source,ocaml]
----
let writeTo (path:string) f =
use writer = new StreamWriter(path)
f writer
----
[source,ocaml]
----
let download path =
use streamReader = new StreamReader(File.OpenRead path)
streamReader.ReadToEnd()
----
I found it quite annoying that those bits of code needed to take up three lines despite the fact I don't really need to have the class construction assigned.
Luckily there is a 'using' function available which allows us to make these bits of code more concise.
'using' takes in 2 arguments - the object to be created and a function which takes in that object and does something with it.
If we make use of that function instead of the 'use' keyword we end up with the following function definitions:
[source,ocaml]
----
let writeTo (path:string) f = using (new StreamWriter(path)) (fun writer -> f writer)
----
[source,ocaml]
----
let download path = using (new StreamReader(File.OpenRead path)) (fun reader -> reader.ReadToEnd())
----
When we're just doing one thing with the resource, as I am here, then I think this reads better. If we're using it for multiple different operations then perhaps the use keyword is more appropriate. | null | null | [
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false | 2009-12-19 00:55:19 | Coding: An outside in observation | [
"coding"
] | [
"Coding"
] | I've been reading http://cacm.acm.org/magazines/2009/5/24646-api-design-matters[Michl Henning's post on API design] and one thing which he points out is that it's important to drive the design of an API based on the way that it will be used by its clients:
____
A great way to get usable APIs is to let the customer (namely, the caller) write the function signature, and to give that signature to a programmer to implement. This step alone eliminates at least half of poor APIs: too often, the implementers of APIs never use their own creations, with disastrous consequences for usability
____
This is similar to http://butunclebob.com/ArticleS.MichaelFeathers.TheGoldenRuleOfApiDesign[Michael Feathers' Golden Rule of API Design]:
____
It's not enough to write tests for an API you develop, you have to write unit tests for code that uses your API. When you do, you learn first-hand the hurdles that your users will have to overcome when they try to test their code independently
____
When we don't do this we start guessing how we think things might be used and we end up with generic solutions which solve many potential use cases in an average to poor way and none of them in a good way.
Henning goes on to say:
____
There are many ways to "pass the buck" when designing an API. A favorite way is to be afraid of setting policy: "Well, the caller might want to do this or that, and I can't be sure which, so I'll make it configurable." The typical outcome of this approach is functions that take five or 10 parameters. Because the designer does not have the spine to set policy and be clear about what the API should and should not do, the API ends up with far more complexity than necessary.
____
What I found interesting while thinking about this is that the underlying idea is to *drive the design from the outside in* which is quite a popular approach in several different areas of software development.
== Consumer Driven Contracts
My colleague Ian Robinson came up with the idea of http://martinfowler.com/articles/consumerDrivenContracts.html[consumer driven contracts] for describing an effective way for service providers and consumers to work together.
The idea here is that since the consumer is going to be using the service they should have more say on its design i.e. the contract is designed with the end use in sight rather than the provider just coming up with something and throwing it over the fence to its consumers who then have to deal with whatever they've been given.
== Test Driven Development/Behaviour Driven Development
While not the only way that we can drive design from the outside in, test driven development is quite a useful way of achieving this when we do it well.
We might typically start out by writing a functional test to describe the functionality that we're about to create and then move down to smaller more targeted unit tests to drive out the functionality.
This approach helps ensure that we only write the code that we need to write to satisfy the bit of functionality being added and from my experience the APIs tend to be more usable than when we just write code without considering how it will be used.
This is similar to what Liz Keogh describes in her 'http://lizkeogh.com/2009/07/01/pixie-driven-development/[Pixie driven development]' post where she describes how to use a behaviour driven approach to implement functionality.
== Functional Programming
I've been playing around with a couple of functional languages for about a year now and I nearly always find that I start out with the high level function and then work out which other functions I need to help me solve the problem at hand.
I can't think of a better way to write functional code than this. On a few occasions I've started writing functions without keeping the end in sight and whenever I do this I seem to end up throwing away the functions because they don't contribute to the overall problem I'm trying to solve. | null | null | [
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] | coding-an-outside-in-observation | https://markhneedham.com/blog/2009/12/19/coding-an-outside-in-observation |
false | 2009-12-07 17:05:57 | Our obsession with efficiency - Dan North | [
"software-development"
] | [
"Software Development"
] | http://www.oredev.org/[Oredev] have put some of the videos from the conference on http://www.vimeo.com/channels/oredev[Vimeo] and one of my favourites is 'http://www.vimeo.com/7849591[Our obsession with efficiency]' by my colleague http://dannorth.net/[Dan North].
The slides for the talk are available on http://www.slideshare.net/dannorth/the-fallacy-of-efficiency[SlideShare].
In this talk Dan leads from the following statement about efficiency:
____
So here's the thing, I don't believe in efficiency. It's our obsession with efficiency that has got us into the current technology mess, and which has led almost directly to heavy waterfall processes. Efficiency is how you let the big vendors sell their bloated technologies to the poor CIOs.
____
== What did I learn?
* Dan spends quite a bit of time explaining how *what we should really care about is effectiveness and not efficiency*. Efficiency is defined as:
+
____
the accomplishment of or ability to accomplish a job with a minimum expenditure of time and effort
____
+
which makes sense in a way but what tends to happen is that achieving that becomes our goal at the expense of everything else. For example adhering to the http://en.wikipedia.org/wiki/Don't_repeat_yourself[DRY principle] is considered a good thing and not repeating code is efficient. However, if we take that to an extreme then it results in code that is difficult to understand and difficult to change which defeats the purpose of that efficiency. In lean terms we want to look to http://www.markhneedham.com/blog/2009/04/14/lean-big-picture-over-local-optimisations/[favour the big picture over local optimisations] whereby we start to measure our effectiveness rather than efficiency. i.e. we focus on the results rather than the effort.
* Later on he points out that *effectiveness is often inefficient* which makes a lot of sense to me. http://www.markhneedham.com/blog/category/pair-programming/[Pair programming] is not an efficient way to get the most code produced - we can do that much more efficiently if we have people working individually. However it allows us to create a much greater shared understanding of the code, reduce the defects and increase the cohesion of that code which is a more important goal overall. The same can be said for something like http://www.markhneedham.com/blog/2009/09/19/set-based-concurrent-engineering-a-simple-example/[set based concurrent engineering] where we work on two solutions simultaneously and then throw one away. It's inefficient but we can delay potentially making the wrong decision so it makes sense to do it.
* Dan also suggests that '*you get what you measure*' and lists a series of examples where aiming for a certain target is actually not very effective and doesn't give us what we want anyway. For example if our goal is to have all the tests passing by the end of the month then we may be tempted to comment out failing tests to achieve this. One which I notice quite frequently is http://www.markhneedham.com/blog/2009/11/23/requirements-the-story-points-focus/[aiming for a story point total] which tends to result in reduced communication between business and IT and we end up delivering features that may not have that much value. It might seem to be locally efficient but in the grand scheme of things it's not efficient at all.
* There's also some discussion around *the desire for people to be 'busy' all the time* which is quite common from my experience. Dan points out that if we can get to a stage where we have time when we're not busy then we have more time to think about what we're doing and perhaps we can even spend this time innovating. I think the key here is to ensure that we're still doing something which is contributing to the overall system goal rather than not doing nothing at all!
There's loads more - it's a very good talk - but these are some of the bits that stand out for me. | null | null | [
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] | our-obsession-with-efficiency-dan-north | https://markhneedham.com/blog/2009/12/07/our-obsession-with-efficiency-dan-north |
false | 2009-12-09 22:10:27 | Haskell vs F#: Function composition | [
"f",
"haskell"
] | [
"fsharp"
] | I'm reading through John Hughes' 'http://www.cs.chalmers.se/~rjmh/Papers/whyfp.html[Why functional programming matters]' paper and one thing I've come across which is a bit counter intuitive to me is the Haskell function composition operator.
I've http://www.markhneedham.com/blog/2009/01/12/f-partial-function-application-with-the-function-composition-operator/[written previously about F#'s function composition operator] which is defined as follows:
[source,ocaml]
----
let inline (>>) f g x = g(f x)
----
To write a function which doubled all the values in a list and then returned the odd values we'd do this:
[source,ocaml]
----
let doubleThenOdd = List.map (fun x -> x*2) >> List.filter (fun x -> x % 2 <> 0)
----
Of course it's not possible for there to be any values!
[source,text]
----
doubleThenOdd [1..5];;
val it : int list = []
----
Based on that understanding I would expect the Haskell function composition operator ('.') to work in the same way:
[source,haskell]
----
let doubleThenOdd = map (\ x -> x*2) . filter (\ x -> (mod x 2) /= 0)
----
But it doesn't!
[source,text]
----
Prelude> doubleThenOdd [1..5]
[2,6,10]
----
In Haskell the functions are applied from right to left rather than left to right as I had expected.
The definition of '.' is therefore:
[source,text]
----
(f . g) x = f (g x)
----
So to get what I wanted we'd need to switch around 'map' and 'filter':
[source,haskell]
----
let doubleThenOdd = filter (\ x -> (mod x 2) /= 0) . map (\ x -> x*2)
----
[source,text]
----
Prelude> doubleThenOdd [1..5]
[]
----
It's not too difficult to follow once I worked out that it was different to what I was used to but I was very confused for a while!
Is there a reason why they implement this operator differently? | null | null | [
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] | haskell-vs-f-function-composition | https://markhneedham.com/blog/2009/12/09/haskell-vs-f-function-composition |
false | 2009-12-09 02:41:47 | Clojure: when-let macro | [
"clojure"
] | [
"Clojure"
] | In my continued playing around with Clojure I came across the 'http://richhickey.github.com/clojure/clojure.core-api.html#clojure.core/when-let[when-let]' macro.
'when-let' is used when we want to bind an expression to a symbol and only execute the body provided as the second argument to the macro if that symbol evaluates to true.
As I http://www.markhneedham.com/blog/2009/11/20/clojure-a-few-things-ive-been-tripping-up-on/[wrote previously], a value of 'false' or 'nil' would result in the second argument not being evaluated.
A simple example of using 'when-let' would be:
[source,lisp]
----
(when-let [a 2] (println "The value of a is:" a))
----
This is the definition:
[source,lisp]
----
(defmacro when-let
"bindings => binding-form test
When test is true, evaluates body with binding-form bound to the value of test"
[bindings & body]
(assert-args when-let
(vector? bindings) "a vector for its binding"
(= 2 (count bindings)) "exactly 2 forms in binding vector")
(let [form (bindings 0) tst (bindings 1)]
`(let [temp# ~tst]
(when temp#
(let [~form temp#]
~@body)))))
----
The 'assert-args' call at the beginning of the macro is quite interesting.
Two assertions are stated:
* The first argument should be a vector
* That vector should contain exactly two forms
I've not used dynamic languages very much before but it seems like this is one way for a dynamic language to fail fast by checking that the arguments are as expected. In a static language that would be a compile time check.
Line 9 is quite interesting as we know that 'bindings' will be a vector so we can take the '0th' and '1st' elements from it and bind them to 'form' and 'tst' respectively. I didn't quite pick up on the first few times I read it.
On line 10 it makes use of 'auto-gensym' to create a unique name which begins with 'temp' and is bound to the value of 'tst' which in the simple example provided would be the value '2'. As I understand it the name would be something like 'temp__304' or something similarly random!
'when 2' evaluates to true which means that we execute the body provided as the second argument.
[source,text]
----
user=> (when-let [a 2] (println "The value of a is:" a))
The value of a is: 2
nil
----
This is a bit of a contrived example of using the construct and it seems to be properly used when we're getting a value out of a list and want to check whether or not we've reached the end of that list or not. If we have then eventually we'll have a value of 'nil' bound by the 'let' and then we'll know we're finished.
An example of where the body wouldn't be evaluated is:
[source,text]
----
user=> (when-let [a nil] (println "This won't get printed"))
nil
----
I don't really understand why we need to bind 'form' to 'temp' on the second last line as it doesn't seem like the value is used? I'm sure there's probably something I'm missing there so if anyone could point it out that'd be cool!
As I understand it, the '~@body' on the last line is called the 'splicing unquote' and it allows the individual values in 'body' to be put into the template started at '`(let [temp# ~tst]' individually rather than just being put in there as a list. | null | null | [
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] | clojure-when-let-macro | https://markhneedham.com/blog/2009/12/09/clojure-when-let-macro |
false | 2009-12-31 16:08:25 | OOP: Behavioural and Structural constraints | [
"oop"
] | [
"OOP"
] | A few months ago I wrote a post describing how we should http://www.markhneedham.com/blog/2009/09/02/tdd-test-the-behaviour-rather-than-implementation/[test the behaviour of code rather than the implementation] whereby we would write tests against the public API of an object rather than exposing other internal data of the object and testing against that directly.
While I still think this is a useful way of testing code I didn't really have a good definition for what makes that a test of an object's behaviour.
I've been reading through James Odell's 'http://www.amazon.com/gp/product/052164819X?ie=UTF8&tag=marneesblo-20&linkCode=as2&camp=1789&creative=390957&creativeASIN=052164819X[Advanced Object-Oriented Analysis and Design Using UML]' and he describes it like so:
____
Behavioural constraints limit the way object state changes may occur
____
In http://www.markhneedham.com/blog/2009/12/01/fundamentals-of-object-oriented-design-in-uml-book-review/[Meilir Page-Jones language] I think this would describe informative and imperative messages:
* Informative -- a message telling an object about something that happened in the past.
* Imperative -- a message telling an object to take some action on itself.
Both of these types of messages change the state of the object so in C# or Java these would be the public methods on an object that clients interact with.
That seems to describe the way that we would test the object. These would be the methods that we'd call in our test.
Odell goes on to describe structural constraints:
____
Structural constraints limit the way objects associate with each other, that is, they restrict object state.
____
This seems close to an interrogative message:
* Interrogative -- a message asking an object to reveal something about itself.
This would seem closer to the way that we would verify whether the object's state changed as expected. We're querying the object through the structural constraints that have been setup.
I can think of two main reasons why this approach is more effective than just testing directly against the internals of an object:
* It ensures we're testing something useful otherwise we might be writing tests on our code for a scenario that will never happen.
* We have a better idea of when we've finished writing our tests since we know when we've tested all the behaviour. | null | null | [
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] | oop-behavioural-and-structural-constraints | https://markhneedham.com/blog/2009/12/31/oop-behavioural-and-structural-constraints |
false | 2009-12-01 23:26:38 | Fundamentals of Object-Oriented Design in UML: Book Review | [
"books",
"object-orientation",
"book-review"
] | [
"Books"
] | One of my favourite recent blog posts is one written by http://www.codeodor.com/index.cfm/2009/6/17/Strive-for-low-coupling-and-high-cohesion-What-does-that-even-mean/2902[Sammy Larbi on coupling and cohesion] and while discussing it with http://fragmental.tw/[Phil] he suggested that I would probably like this book and in particular http://www.markhneedham.com/blog/2009/10/28/coding-connascence-some-examples/[the chapter on connascence which I've previously written about].
== The Book
http://www.amazon.com/gp/product/020169946X?ie=UTF8&tag=marneesblo-20&linkCode=as2&camp=1789&creative=390957&creativeASIN=020169946X[Fundamentals of Object-Oriented Design in UML] by Meilir Page-Jones
== The Review
I really enjoyed reading this book and I think it's one that I could come back and read again to gain something else from in the future.
Nearly all the mistakes that I've made and seen made with respect to the design of object oriented code are outlined in one form or the other in this book.
The book is split into three sections. The first discusses some fairly basic object oriented concepts, the second covers UML as a notation for describing our designs and the final section goes more deeply into the principles of object-oriented design.
== What did I learn?
* Although we don't seem to use UML much these days I was coming to the conclusion while reading those chapters that perhaps UML is useful as a design tool but the aim shouldn't be to come up with a UML diagram, but rather to drive a design in code. This is something which http://blog.objectmentor.com/articles/2009/10/08/tdd-triage[Uncle Bob also touched on recently]:
+
____
Is TDD a replacement for design? No. You still need all your design skills. You still need to know design principles, and design patterns. You should know UML. And, yes, you should create lightweight models of your proposed software designs.
____
+
We actually found on a project I worked on recently that everyone had a different way of diagramming a design and it would have been useful to have a common notation between us. UML is surely the tool to solve that problem.
* I quite like the way that Page-Jones describes the *different types of messages* that objects can receive:
** Informative - a message telling an object about something that happened in the past.
** Interrogative - a message asking an object to reveal something about itself.
** Imperative - a message telling an object to take some action on itself.
+
An interrogative message is effectively a getter whereas the other two are commands being sent to the object. I've not seen the distinction between events which happened in the past and those which are going to happen in the immediate future.
* I've frequently come across the idea of information hiding when it comes to designing objects but Page-Jones introduces the idea of *implementation hiding* which I think is really neat. The idea is that while some information about our object will be viewable to other objects e.g. through attributes/getters, we can still hide the implementation of that information internally so that if we we want to change it in the future then we won't have to change all its clients too.
* I found the concept of the *rings of operation* really interesting. The idea is that there are some methods on our objects which just make use of other methods on the same object. Those methods wouldn't touch any of the fields of an object directly but would rely on those methods in the inner rings to do so. For example if we have a getter on an object to access a field then if other methods on that object want to access that field they should go via the getter instead of accessing the field directly. I often find myself avoiding using getters with the hope that if don't increase their usage then it will be easier to get rid of them in the future. This approach would discourage doing that.
* I like the idea of http://www.markhneedham.com/blog/2009/11/19/two-controllers-type-conformance-and-the-liskov-substitution-principle/[type conformance] when it comes to inheritance - we should try to ensure that any sub types adhere to the contract of their parent. The other part of this chapter describes '*closed behaviour*' - all the operations on any class that we inherit from should obey our class' invariant. I think this can be where we go wrong when http://www.markhneedham.com/blog/2009/07/24/wrapping-collections-inheritance-vs-composition/[we write classes which extend a List for example]. The API of a List will typically have 'Add' and ''Remove' operations but on a lot of the application I work on we only want the 'Add' functionality and not the 'Remove' option. Page Jones suggests that if we want to use inheritance in this situation then we should override methods on the super class to make 'Remove' do nothing.
* I now find that I prefer Page Jones definition of cohesion:
+
____
Class cohesion is the measure of interrelatedness of the features (the attributes and operations) located in the external interface of a class
____
+
I'm inclined to believe that we might be able to tell how related the features are by looking at the clients of the class and seeing whether they are all using the class in similar ways. He then outlines three signs that we have cohesion problems with a class:
** Mixed instance cohesion - a class has some features that are undefined for some objects of the class. I find that this typically happens when we try to make a generic data type to cover everything and then try to jam any variations on the type into the same definition. It is typically solved by pulling out another class. This is the worst type of cohesion.
** Mixed domain cohesion - a class contains an element that directly couples the class with another class that is unrelated domain wise. This typically happens when we mix infrastructure code into our domain code.
** Mixed role cohesion - a class contains an element that couples it with an unrelated class in the same domain. I think this is the most typical type of cohesion that I've seen and the main problem is that we end up with classes which have multiple roles which makes them difficult to change.
+
</ul>
+
== In Summary
+
There's way more in this book than I could ever hope to cover here but these are some of the interesting bits that stood out from this reading of it. I'm pretty sure that I'll come back to this one in the future. While reading the book I had the feeling that some of the ideas are quite similar to those in Domain Driven Design and since this book was published it contributes to my belief that http://www.markhneedham.com/blog/2008/09/20/similarities-between-domain-driven-design-object-oriented-programming/[a lot of DDD is covered by just doing OOP well]. Overall this is a really good book, worth reading. | null | null | [
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] | fundamentals-of-object-oriented-design-in-uml-book-review | https://markhneedham.com/blog/2009/12/01/fundamentals-of-object-oriented-design-in-uml-book-review |
false | 2009-12-06 03:28:05 | Clojure: Unit testing in the REPL | [
"clojure"
] | [
"Clojure"
] | One thing which I think is great about coding with F# is the http://www.markhneedham.com/blog/2009/07/20/coding-quick-feedback/[quick feedback that we can get by defining and then testing out functions in the REPL].
We can do the same thing in Clojure but it's even better because we can also define and run unit tests which I think is pretty neat.
Nurullah Akkaya has a http://nakkaya.com/2009/11/18/unit-testing-in-clojure/[good post which describes how to use clojure.test], a testing framework written by http://stuartsierra.com/software/clojure-stuff[Stuart Sierra] so I've been using that to define some tests cases for the http://www.markhneedham.com/blog/2009/11/30/clojure-parsing-an-rss-feed/[little RSS feed parser that I'm writing].
To use clojure.test straight out the box you need the http://github.com/richhickey/clojure[latest version of the clojure source code] as Stuart Sierra http://stuartsierra.com/software/clojure-stuff[points out on his website].
I ran the ant task for the project and then launched the REPL pointing to the 'alpha snapshot' jar instead of the '1.0.0' jar and it seems to work fine.
I managed to break the 'get-title' function while playing with it before so I thought that would be a good one to try out the tests in the REPL with.
This function is supposed to strip out the name and the following colon which appears in every title and just show the title of the blog post.
I originally had this definition:
[source,lisp]
----
(defn get-title [title]
(second (first (re-seq #".*:\s(.*)" title))))
----
I hadn't realised that this strips from the last colon in the string and therefore returns the wrong result for some inputs.
I created the following tests:
[source,lisp]
----
(use 'clojure.test)
(deftest test-get-title
(is (= "Clojure - It's awesome" (get-title "Mark Needham: Clojure - It's awesome")))
(is (= "A Book: Book Review" (get-title "Mark Needham: A Book: Book Review"))))
----
We can run those with the following function:
[source,lisp]
----
(run-tests)
----
[source,text]
----
FAIL in (test-get-title) (NO_SOURCE_FILE:19)
expected: (= "A Book: Book Review" (get-title "Mark Needham: A Book: Book Review"))
actual: (not (= "A Book: Book Review" "Book Review"))
Ran 1 tests containing 2 assertions.
1 failures, 0 errors.
----
Changing the function helps solve the problem:
[source,lisp]
----
(defn- get-title [title]
(second (first (re-seq #"[a-zA-Z0-9 ]+:\s(.*)" title))))
----
[source,text]
----
Ran 1 tests containing 2 assertions.
0 failures, 0 errors.
----
We can also run the assertions directly without having to call 'run-tests':
[source,lisp]
----
(is (= "A Book: Book Review" (get-title "Mark Needham: A Book: Book Review")))
----
[source,text]
----
true
----
[source,lisp]
----
(is (= "Something Else" (get-title "Mark Needham: A Book: Book Review")))
----
[source,text]
----
expected: (= "Something Else" (get-title "Mark Needham: A Book: Book Review"))
actual: (not (= "Something Else" "A Book: Book Review"))
false
----
Nurullah has http://nakkaya.com/2009/11/18/unit-testing-in-clojure/[more detail in his post about how to integrate tests into a build] although I don't need to do that just yet! | null | null | [
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] | clojure-unit-testing-in-the-repl | https://markhneedham.com/blog/2009/12/06/clojure-unit-testing-in-the-repl |
false | 2009-12-24 05:26:46 | Debug It: Book Review | [
"books",
"debugging",
"book-review"
] | [
"Books"
] | David Agans' 'http://www.amazon.com/gp/product/0814474578?ie=UTF8&tag=marneesblo-20&linkCode=as2&camp=1789&creative=390957&creativeASIN=0814474578[Debugging]' is the best debugging book that I've read so I was intrigued to see that there was another book being written on the subject.
Paul Butcher offered me a copy of the book to review so I was keen to see whether it was more like 'Debugging' or 'http://www.amazon.com/gp/product/0978739213?ie=UTF8&tag=marneesblo-20&linkCode=as2&camp=1789&creative=390957&creativeASIN=0978739213[Release It]' http://blogs.tedneward.com/2009/11/23/Book+Review+Debug+It+Paul+Butcher+Pragmatic+Bookshelf.aspx[as Ted Neward suggests].
== The Book
http://www.amazon.com/gp/product/193435628X?ie=UTF8&tag=marneesblo-20&linkCode=as2&camp=1789&creative=390957&creativeASIN=193435628X[Debug It] by Paul Butcher
== The Review
http://devlicio.us/blogs/krzysztof_kozmic/archive/2009/08/30/book-review-debug-it-find-repair-and-prevent-bugs-in-your-code.aspx[Much like Krzysztof Kozmic] I found that a lot of the ideas early on in the book were similar to what I've been taught by my ThoughtWorks colleagues over the last 3 1/2 years.
I do think it's really good seeing these ideas in words though because it's quite easy to forget about the best way to approach problems in the heat of the moment and the approaches suggested by Paul certainly aren't done everywhere in my experience.
These were some of my favourite parts of the book:
* When chasing a bug Butcher suggests that a useful technique to use is to+++<strong>+++try and disprove your theory of why the problem has happened+++</strong>+++. Too often we come up with a theory and just adapt any data to fit our thinking. This is also known as http://en.wikipedia.org/wiki/Confirmation_bias[confirmation bias]. In his talk 'http://www.markhneedham.com/blog/2009/04/25/pimp-my-architecture-dan-north/[Pimp my architecture]' Dan North suggests a similar approach more generally when working out how to tackle any problem. Each person has to take the other person's argument and then fight for that to be used instead. I quite like this idea - certainly something to try out.
* When discussing the need to refactor code as we go along, the author points out that *if the code we want to change doesn't have any tests around it then we need to write some* to provide us with a safety net.
+
____
Remember, however, that refactoring crucially depends upon the support of an extensive suite of automated tests. Without tests, you're not refactoring. You're hacking.
____
+
Hamlet D'Arcy http://hamletdarcy.blogspot.com/2009/06/forgotten-refactorings.html[makes a similar point but perhaps more forcibly in a really good blog post] and Michael Feathers' 'http://www.amazon.com/gp/product/0131177052?ie=UTF8&tag=marneesblo-20&linkCode=as2&camp=1789&creative=390957&creativeASIN=0131177052[Working Effectively With Legacy Code]' covers the topic in much more detail.
* One tip which seems obvious but is still one I've tripped up on many times is to *go through the list of changes that we've made before checking in*! It's incredibly easy to forget about some seemingly insignificant change that we made before checking it in and perhaps breaking our application unexpectedly. Somewhat tied in with this is the idea of checking in small changes more frequently and http://www.markhneedham.com/blog/2009/12/22/one-change-at-a-time/[only changing one thing at a time which I wrote about previously].
* I like that Butcher puts a lot of emphasis on *ensuring that we actually know what's going wrong before we attempt to fix anything*.
+
____
Without first understanding the true root cause of the bug, we are outside the realms of software engineering and delving instead into voodoo programming or programming by coincidence.
____
+
This is particularly true when addressing performance problems where he rightly suggests that we should look to profile the code before making a premature optimisation. He also suggests using the http://www.markhneedham.com/blog/2009/03/20/coding-reassessing-what-the-debugger-is-for/[debugger] so that we can get a good idea about what the code is actually doing when it's running. While I think this is useful I feel that the need to use the debugger in this way frequently might suggest that our code is difficult to reason about which could well be something to address.
* A couple of other cool suggestions are tohttp://www.markhneedham.com/blog/2009/09/07/a-reminder-that-sometimes-its-best-just-to-ask/[call on team mates to help us out] if we're getting stuck trying to fix a bug and if that's not possible then to either http://www.markhneedham.com/blog/2009/11/15/a-reminder-to-talk-to-the-rubber-duck/[write out the problem or talk to the rubber duck].
+
____
If you don't have someone to play the role of cardboard cutout, all is not necessarily lost. Try scribbling down a narrative of the problem on paper or perhaps composing an email to a friend. The trick is not to censor yourself -- just like a writer would.
____
+
I don't think *the importance of communicating with team mates can be underestimated* and Butcher points out that if we notice a bad pattern in the code than it's no good just going through and changing it everywhere. We need to talk with the rest of the team to decide whether we can get an agreement on the way we'll develop code going forwards.
* The only idea I disagreed with is that of putting http://www.markhneedham.com/blog/2009/02/14/coding-assertions-in-constructors/[assertions] http://www.markhneedham.com/blog/2009/10/31/coding-invariant-checking-on-dependency-injected-components/[into] http://www.markhneedham.com/blog/2009/10/29/coding-consistency-when-invariant-checking/[the code] which I feel adds clutter to our code even though it makes it fail faster than would otherwise be the case. From my experience if we write good enough unit tests and have http://watchitlater.com/blog/archives/115[good logging] in our code then the assertions aren't needed.
== In Summary
The book is pretty quick to read at around 200 pages and packs a lot of useful tips into that space. I'd say it's a pretty useful book to keep by your desk to refer to now and then. | null | null | [
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] | debug-it-book-review | https://markhneedham.com/blog/2009/12/24/debug-it-book-review |
false | 2009-12-23 07:27:51 | Duke Nukem Forever & Reworking code | [
"software-development"
] | [
"Software Development"
] | http://twitter.com/offbytwo[Cosmin Stejerean] linked to a really interesting article on wired.com which tells the story of http://www.wired.com/magazine/2009/12/fail_duke_nukem/all/1[how Duke Nukem failed over 12 years to ship their latest game], eventually giving up.
Phil has written a post about the article http://fragmental.tw/2009/12/22/duke-nukem-forever-and-magic-bags-of-money[from the angle of his experience working with these types of companies and working out how to get something into production] but as I read this article it seemed to have some relation to reworking code and why/how we approach this.
It can be reworking of code through either http://blogs.agilefaqs.com/2009/12/22/rewrite-vs-refactor-dilemma/[rewriting or refactoring], but the general idea is that it's not directly contributing to getting something released.
One particular bit of the article stood out to me as being particularly interesting - it describes how they decided to change from the Quake II game engine to the Unreal one:
____
One evening just after E3, while the team sat together, a programmer threw out a bombshell: Maybe they should switch to Unreal? "`The room got quiet for a moment,`" Broussard recalled. Switching engines again seemed insane -- it would cost another massive wad of money and require them to scrap much of the work they'd done. But Broussard decided to make the change. Only weeks after he showed off Duke Nukem Forever, he stunned the gaming industry by announcing the shift to the Unreal engine. "`It was effectively a reboot of the project in many respects,`"
____
What they effectively did here is to rip out a core bit of the architecture and totally change it which would be quite a difficult decision to make if you knew you had to deliver by a certain date.
We've made that decision on projects that I've worked on but you have need to come up with a very compelling argument to do so i.e. typically that productivity will be much improved by making the change.
Whenever we talked about refactoring code during our technical book club http://intwoplacesatonce.com/[Dave] always pointed out that http://weblog.raganwald.com/2008/05/narcissism-of-small-code-differences.html[refactoring for the sake of doing so] is pointless which to an extent explains why it makes most sense to refactor either around the code that we're currently working on or http://fabiopereira.me/blog/2009/09/01/technical-debt-retrospective/[in the areas that are causing us most pain].
For me *the goal of refactoring code is to make it easier to work with or easier to change* but it's useful to remember that we're refactoring to help us reach another goal.
An idea which I quite like (suggested by http://www.dtsato.com/blog/[Danilo]) but haven't tried yet is running technical retrospectives more frequently so that we can work out which areas of the code we need to work out for our current release and then make use of http://no-new-ideas.blogspot.com/2008/11/bowling-cards.html[Stuart Caborn's bowling card idea] to keep track of how much effort we've spent on these problems.
It seems like any refactorings we decide to do need to be linked to a common vision which we're trying to achieve and that seems to be where Duke Nukem went wrong. The vision of what was actually required for the game to be successful was lost and as many features as possible were added in.
The Duke Nukem approach seems quite similar to going through the code and making refactorings just to make the code 'better' even though we might not see any return from doing so.
In http://www.amazon.com/gp/product/193435628X?ie=UTF8&tag=marneesblo-20&linkCode=as2&camp=1789&creative=390957&creativeASIN=193435628X[Debug It] Paul Butcher suggests that we need to approach bugs in software with pragmatic zero tolerance by realising that while our aim is to have no bugs we need to keep sight of our ultimate goal while doing so.
I think we can apply the same rule when reworking code. We should look to write good code which is well factored and easy to change but realise that we'll never be able to write perfect code and we shouldn't beat ourselves up about it. | null | null | [
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] | duke-nukem-forever-reworking-code | https://markhneedham.com/blog/2009/12/23/duke-nukem-forever-reworking-code |
false | 2009-12-15 08:09:05 | Coding: The little details all add to our understanding | [
"coding"
] | [
"Coding"
] | I've been watching an interesting presentation by Scott Hanselmann titled 'http://www.vimeo.com/7680468[Information Overload and Managing the Flow]' from http://www.oredev.org/[OreDev] where he covers various strategies to allow us to be more productive in the face of the huge amounts of information constantly threatening to overwhelm us.
One interesting suggestion he has around 37 minutes in is that when learning a new language it might be a good idea to contact someone who's an expert in that language and get some framing knowledge on the type of stuff that's worth learning and what we might not bother with.
While this seems like a pretty good idea I think it's also useful to note that a lot of the knowledge that people have in a subject area comes from the little things that may seem insignificant as part of the big picture.
Donald Knuth points out something similar in his interview in http://www.amazon.com/gp/product/1430219483?ie=UTF8&tag=marneesblo-20&linkCode=as2&camp=1789&creative=390957&creativeASIN=1430219483[Coders at Work]:
Seibel:
____
It seems a lot of the people I've talked to had direct access to a machine when they were starting out. Yet Dijkstra has a paper I'm sure you're familiar with, where he basically says we shouldn't let computer science students touch a machine for the first few years of their training; they should spend all their time manipulating symbols.
____
Knuth:
____
But that's not the way he learned either. He said a lot of really great things and inspirational things, but he's not always right. Neither am I, but my take on it is this: Take a scientist in any field. *The scientist gets older and says, "`Oh, yes, some of the things that I've been doing have a really great payoff and other things, I'm not using anymore. I'm not going to have my students waste time on the stuff that doesn't make giant steps. I'm not going to talk about low-level stuff at all. These theoretical concepts are really so powerful--that's the whole story. Forget about how I got to this point.`"* I think that's a fundamental error made by scientists in every field. They don't realize that when you're learning something you've got to see something at all levels. You've got to see the floor before you build the ceiling. That all goes into the brain and gets shoved down to the point where the older people forget that they needed it.
____
Over the last year or so I've played around with F#, Scala and Clojure and I've found with all three of them that I only start to understand how things work when I take an example from the book and then play around with it in the REPL and work out what combinations of the syntax lead to a compilation error and which don't.
It's a pretty inefficient way of learning if you look at it from a high level but I find it's a necessary step for me. When I don't fight with the compiler like this then I don't really understand what I've read in a book or blog post well enough to write some code myself or explain it to someone else.
I don't find that anything is truly a waste of time - even if it's something indirectly related such as reading a functional programming paper or following some examples of how lazy evaluation works in another language it all contributes to our understanding.
It's certainly useful to get advice and help from people who know a language really well but we need to be careful not to under estimate the value of making mistakes and learning from them. | null | null | [
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] | coding-the-little-details-all-add-to-our-understanding | https://markhneedham.com/blog/2009/12/15/coding-the-little-details-all-add-to-our-understanding |
false | 2009-12-12 03:53:37 | Clojure: My first attempt at a macro | [
"clojure"
] | [
"Clojure"
] | I'm up to the chapter on using macros in Stuart Halloway's 'http://www.amazon.com/gp/product/1934356336?ie=UTF8&tag=marneesblo-20&linkCode=as2&camp=1789&creative=390957&creativeASIN=1934356336[Programming Clojure]' book and since I've never used a language which has macros in before I thought it'd be cool to write one.
In reality there's no reason to create a macro to do what I want to do but I wanted to keep the example simple so I could try and understand exactly how macros work.
I want to create a macro which takes in one argument and then prints hello and the person's name.
In the book Halloway suggests that we should start with the expression that we want to end up with, so this is what I want:
[source,lisp]
----
(println "Hello" person)
----
My first attempt to do that was:
[source,lisp]
----
(defmacro say-hello [person]
println "Hello" person)
----
I made the mistake of forgetting to include the brackets around the 'println' expression so it doesn't actually pass '"Hello"' and 'person' to 'println'. Instead each symbol is evaluated individually.
When we evaluate this in the REPL we therefore don't quite get what we want:
[source,text]
----
user=> (say-hello "mark")
"mark"
----
Expanding the macro results in:
[source,text]
----
user=> (macroexpand-1 '(say-hello "Mark"))
"Mark"
----
Which is the equivalent of doing this:
[source,text]
----
user=> (eval (do println "hello" "Mark"))
"Mark"
----
As I http://www.markhneedham.com/blog/2009/12/12/clojure-forgetting-the-brackets/[wrote previously] this is because 'do' evaluates each argument in order and then returns the last one which in this case is "Mark".
I fixed that mistake and got the following:
[source,lisp]
----
(defmacro say-hello [person]
(println "Hello" person))
----
Which returns the right result...
[source,lisp]
----
user=> (say-hello "Mark")
Hello Mark
nil
----
...but actually evaluated the expression rather than expanding it because I didn't escape it correctly:
[source,text]
----
user=> (macroexpand-1 '(say-hello "Mark"))
Hello Mark
nil
----
After these failures I decided to try and change one of the examples from the book instead of my trial and error approach.
One approach used is to build a list of Clojure symbols inside the macro definition:
[source,lisp]
----
(defmacro say-hello [person]
(list println "hello" person))
----
[source,text]
----
user=> (macroexpand-1 '(say-hello "Mark"))
(#<core$println__5440 clojure.core$println__5440@681ff4> "hello" "Mark")
----
This is pretty much what we want and although the http://twitter.com/ajlopez/statuses/6540996368['println' symbol has been evaluated at macro expansion time] it doesn't actually make any difference to the way the macro works.
We can fix that by escaping 'println' so that it won't be evaluated until evaluation time:
[source,lisp]
----
(defmacro say-hello [person]
(list 'println "hello" person))
----
[source,text]
----
user=> (macroexpand-1 '(say-hello "Mark"))
(println "hello" "Mark")
----
I thought it should also be possible to quote(') the whole expression instead of building up the list:
[source,lisp]
----
(defmacro say-hello [person]
'(println "hello" person))
----
This expands correctly but when we try to use it this happens:
[source,text]
----
user=> (say-hello "Mark")
java.lang.Exception: Unable to resolve symbol: person in this context
----
The problem is that when we use quote there is no evaluation of any of the symbols in the expression so http://twitter.com/patrickdlogan/statuses/6536320695[the symbol 'person' is only evaluated at runtime and since it hasn't been bound to any value] we end up with the above error.
If we want to use the approach of non evaluation then we need to make use of the backquote(`) which stops evaluation of anything unless it's preceded by a ~.
[source,lisp]
----
(defmacro a [person]
`(println "hello" ~person))
----
This allows us to evaluate 'person' at expand time and replace it with the appropriate value.
In hindsight the approach I took to write this macro was pretty ineffective although it's been quite interesting to see all the different ways that I've found to mess up the writing of one!
Thanks to http://twitter.com/ajlopez[A. J. Lopez], http://twitter.com/patrickdlogan[Patrick Logan] and http://twitter.com/fogus[fogus] for helping me to understand all this a bit better than I did to start with! | null | null | [
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] | clojure-my-first-attempt-at-a-macro | https://markhneedham.com/blog/2009/12/12/clojure-my-first-attempt-at-a-macro |
false | 2009-12-12 03:51:19 | Clojure: Forgetting the brackets | [
"clojure"
] | [
"Clojure"
] | I've been playing around with macros over the last few days and while writing a simple one forgot to include the brackets to make it evaluate correctly:
[source,lisp]
----
(defmacro say-hello [person]
println "Hello" person)
----
This macro doesn't even expand like I thought it would:
[source,text]
----
user=> (macroexpand-1 '(say-hello blah))
blah
----
That seemed a bit strange to me but I eventually realised that I'd missed off the brackets around 'println' and the arguments following it which would have resulted in 'println' being evaluated with those arguments.
I was a bit curious as to why that happened so I tried the following expression without any brackets to see what would happen:
[source,text]
----
user=> println "hello" "mark"
#<core$println__5440 clojure.core$println__5440@681ff4>
"mark"
"random"
----
It seems to just evaluate each thing individually and when we put this type of expression into a function definition the function will do the same thing but also return the last thing evaluated:
[source,lisp]
----
(defn say-hello [] println "hello" "mark")
----
[source,text]
----
user=> (say-hello)
"mark"
----
http://twitter.com/ajlopez/statuses/6563641565[A. J. Lopez pointed out] that this is quite like http://www.delorie.com/gnu/docs/elisp-manual-21/elisp_125.html[progn] in other LISPs and is the same as doing the following:
[source,text]
----
user=> (do println "hello" "mark")
"mark"
----
http://clojure.org/special_forms#toc3[do] is defined as follows:
____
(do exprs*) Evaluates the expressions in order and returns the value of the last. If no expressions are supplied, returns nil.
____
The way to write a function which passes those two arguments to 'println' is of course to put brackets around the statement:
[source,lisp]
----
(defn say-hello [] (println "hello" "mark"))
----
[source,text]
----
user=> (say-hello)
hello mark
nil
---- | null | null | [
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] | clojure-forgetting-the-brackets | https://markhneedham.com/blog/2009/12/12/clojure-forgetting-the-brackets |
false | 2009-12-13 21:47:04 | TDD: Only mock types you own | [
"tdd",
"testing"
] | [
"Testing"
] | http://lizdouglass.wordpress.com/2009/12/12/mock-objects/[Liz recently posted about mock objects] and the original 'http://www.jmock.org/oopsla2004.pdf[mock roles, not objects]' paper and one thing that stood out for me is the idea that *we should only mock types that we own*.
I think this is quite an important guideline to follow otherwise we can end up in a world of pain.
One area which seems particularly vulnerable to this type of thing is when it comes to http://www.markhneedham.com/blog/category/hibernate/[testing code which interacts with Hibernate].
A common pattern that I've noticed is to create a mock for the 'http://docs.jboss.org/hibernate/stable/entitymanager/reference/en/html_single/[EntityManager]' and then verify that certain methods on it were called when we persist or load an object for example.
There are a couple of reasons why doing this isn't a great idea:
. We have no idea what the correct method calls are in the first place so we're just guessing based on looking through the Hibernate code and selecting the methods that we think make it work correctly.
. If the library code gets changed then our tests break even though functionally the code might still work
The suggestion in the paper when confronted with this situation is to put a wrapper around the library and then presumably test that the correct methods were called on the wrapper.
____
Programmers should not write mocks for fixed types, such as those defined by the runtime or external libraries. Instead they should write thin wrappers to implement the application abstractions in terms of the underlying infrastructure. Those wrappers will have been defined as part of a need-driven test.
____
I've never actually used that approach but I've found that with Hibernate in particular it makes much more sense to write functional tests which *verify the expected behaviour of using the library*.
With other libraries which perhaps don't have side effects like Hibernate does those tests would be closer to unit tests but the goal is still to test the result that we get from using the library rather than being concerned with the way that the library achieves that result. | null | null | [
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] | tdd-only-mock-types-you-own | https://markhneedham.com/blog/2009/12/13/tdd-only-mock-types-you-own |
false | 2009-12-22 06:01:04 | One change at a time | [
"software-development"
] | [
"Software Development"
] | I'm reading through Paul Butcher's 'http://www.amazon.com/gp/product/193435628X?ie=UTF8&tag=marneesblo-20&linkCode=as2&camp=1789&creative=390957&creativeASIN=193435628X[Debug It]' book and one of his suggestions when trying to diagnose a problem in our code is to *only change one thing at a time*.
In a way this might seem fairly obvious but I've certainly fallen into the trap of making multiple changes at the same time in the misled belief that it'll lead to the problem being solved more quickly.
When making changes to code Butcher has the following piece of advice which I quite like:
____
Once you see a change in behavior, undo whatever apparently caused it, and verify that the behavior retur ns to what it was before-hand. This is a very power ful indication that you're looking at cause and effect rather than serendipity.
____
I noticed this while debugging my http://www.markhneedham.com/blog/2009/12/18/f-word-count-a-somewhat-failed-attempt/[F# word count application]. As I mentioned, http://www.markhneedham.com/blog/2009/12/20/f-word-count-using-a-dictionary/[I thought that the problem was that I was storing the text from all the files in memory] so instead of doing that I made that part of the application lazy so that the text would only be loaded when required.
When I first did this the program still didn't work but it failed later on than it had previously.
I thought that had shown where the problem was so I put the code back to how it was previously to check.
To my surprise it still failed in the same place which meant that the change in how it executed had been coincidental rather than related to any code change I'd made.
I think this idea is more widely applicable though as I've noticed that http://www.markhneedham.com/blog/2009/02/08/refactoring-comment-it-out-vs-small-steps-removal/[it works quite well when refactoring] as well. If we can be really certain about which changes work and which don't to a very fine grained level then we have more chance of successfully refactoring our code while ensuring that it still functions correctly.
The goal seems to be the same in both of these situations - take small steps and then get feedback quickly on how successful that small step was. | null | null | [
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] | one-change-at-a-time | https://markhneedham.com/blog/2009/12/22/one-change-at-a-time |
false | 2009-12-25 22:25:57 | Roy Osherove's TDD Kata: My first attempt | [
"tdd"
] | [
"Coding"
] | I recently came across http://weblogs.asp.net/rosherove/archive/2009/12/23/comments-on-corey-haines-string-calculator-tdd-kata-implementation.aspx[Roy Osherove's commentary] on http://katas.softwarecraftsmanship.org/?p=80[Corey Haines' attempt] at http://osherove.com/tdd-kata-1/[Roy's TDD Kata] so I thought I'd try it out in C#.
http://www.21apps.com/agile/tdd-kata-by-example-video/[Andrew Woodward has recorded his version of the kata] where he avoids using the mouse for the whole exercise so I tried to avoid using the mouse as well and it was surprisingly difficult!
I've only done the first part of the exercise so far which is as follows:
. Create a simple String calculator with a method *int Add(string numbers)*
.. The method can take 0, 1 or 2 numbers, and will return their sum (for an empty string it will return 0) for example+++<strong>+++“” or “1” or “1,2”+++</strong>+++
.. Start with the simplest test case of an empty string and move to 1 and two numbers
.. Remember to solve things as simply as possible so that you force yourself to write tests you did not think about
.. Remember to refactor after each passing test
. Allow the Add method to handle an unknown amount of numbers
. Allow the Add method to handle new lines between numbers (instead of commas).
.. the following input is ok: “1\n2,3” (will equal 6)
.. the following input is NOT ok: “1,\n”
.. Make sure you only test for correct inputs. there is no need to test for invalid inputs for these katas
. Allow the Add method to handle a different delimiter:
.. to change a delimiter, the beginning of the string will contain a separate line that looks like this: “//[delimiter]\n[numbers…]” for example “//;\n1;2” should return three where the default delimiter is ‘;’ .
.. the first line is optional. all existing scenarios should still be supported
. Calling Add with a negative number will throw an exception “negatives not allowed” - and the negative that was passed.if there are multiple negatives, show all of them in the
== Mouseless coding
I know a lot of the http://www.jetbrains.com/resharper/[Resharper] shortcuts but I found myself using the mouse mostly to switch to the solution explorer and run the tests.
These are some of the shortcuts that have become more obvious to me from trying not to use the mouse:
* I'm using a Mac and VMWare so I followed http://chriskchew.wordpress.com/2008/10/28/developing-net-on-a-mac-–-resharper-altinsert/[the instructions on Chris Chew's blog] to setup the key binding for 'Alt-Insert'. I also setup a key binding for 'Ctrl-~' to map to 'Menu' to allow me to right click on the solution explorer menu to create my unit tests project, to add references and so on. I found that I needed to use VMWare 2.0 to get those key bindings setup - I couldn't work out how to do it with the earlier versions.
* I found that I had to use '*Ctrl-Tab*' to get to the various menus such as Solution Explorer and the Unit Test Runner. '*Ctrl-E*' also became useful for switching between the different code files.
== Simplest thing possible
The first run through of the exercise I made use of a http://www.markhneedham.com/blog/2008/08/17/returning-from-methods/[guard block] for the empty string case and then went straight to 'String.Split' to get each of the numbers and then add them together.
It annoyed me that there had to be a special case for the empty string so I changed my solution to make use of a regular expression instead:
[source,csharp]
----
Regex.Matches(numbers, "\\d").Cast<Match>().Select(x => int.Parse(x.Value)).Aggregate(0, (acc, num) => acc + num);
----
That works for nearly all of the cases provided but it's not incremental at all and it doesn't even care if there are delimeters between each of the numbers or not, it just gets the numbers!
It eventually came unstuck when trying to work out if there were negative numbers or not. I considered trying to work out how to do that with a regular expression but it did feel as if I'd totally missed the point of the exercise:
____
Remember to solve things as simply as possible so that you force yourself to write tests you did not think about
____
I decided to watch Corey's video to see how he'd achieved this and I realised he was doing much smaller steps than me.
I started again following his lead and found it interesting that *I wasn't naturally seeing the smallest step but more often than not the more general solution to a problem*.
For example the first part of the problem is to add together two numbers separated by a comma.
Given an input of "1,2" we should get a result of 3.
I really wanted to write this code to do that:
[source,csharp]
----
if(number == "") return 0;
return number.Split(',').Aggregate(0, (acc, num) => acc + int.Parse(num));
----
But a simpler version would be this (assuming that we've already written the code for handling a single number):
[source,csharp]
----
if (number == "") return 0;
if (number.Length == 1) return int.Parse(number);
return int.Parse(number.SubString(0,1)) + int.Parse(number.SubString(2, 1));
----
After writing a few more examples we do eventually end up at something closer to that first solution.
== Describing the relationships in code
I'm normally a fan of doing simple incremental steps but for me the first solution expresses the intent of our solution much more than the second one does and the step from using 'SubString' to using 'Split' doesn't seem that incremental to me. It's a http://www.markhneedham.com/blog/2009/12/10/tdd-big-leaps-and-small-steps/[bit of a leap].
This exercise reminds me a bit of a post by Reg Braithwaite where he talks about http://weblog.raganwald.com/2007/12/golf-is-good-program-spoiled.html[programming golf]. In this post he makes the following statement:
____
The goal is readable code that expresses the underlying relationships.
____
In the second version of this we're describing the relationship very specifically and then we'll generalise that relationship later when we have an example which forces us to do that. I think that's a good thing that the incremental approach encourages.
== Programming in the large/medium/small
In this exercise I found that the biggest benefit of only coding what you needed was that the code was easier to change when a slightly different requirement was added. If we've already generalised our solution then it can be quite difficult to add that new requirement.
I recently read a post by Matt Podwysocki http://weblogs.asp.net/podwysocki/archive/2009/12/14/going-hybrid-implementing-a-shopping-cart-in-f.aspx[where he talks about three different types of programming]:
* Programming in the large: a high level that affects as well as crosscuts multiple classes and functions
* Programming in the medium: a single API or group of related APIs in such things as classes, interfaces, modules
* Programming in the small: individual function/method bodies
From my experience generalising code prematurely hurts us the most when we're programming in the large/medium and it's really difficult to recover once we've done that.
I'm not so sure where the line is when programming in the small. I feel like generalising code inside small functions is not such a bad thing although based on this experience perhaps that's me just trying to justify my currently favoured approach! | null | null | [
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] | roy-osheroves-tdd-kata-my-first-attempt | https://markhneedham.com/blog/2009/12/25/roy-osheroves-tdd-kata-my-first-attempt |
false | 2017-03-28 05:39:04 | Luigi: Defining dynamic requirements (on output files) | [
"python",
"luigi"
] | [
"Python"
] | In http://www.markhneedham.com/blog/2017/03/25/luigi-externalprogramtask-example-converting-json-csv/[my last blog post] I showed how to convert a JSON document containing meetup groups into a CSV file using Luigi, the Python library for building data pipelines. As well as creating that CSV file I wanted to go back to the https://www.meetup.com/meetup_api/[meetup.com API] and download all the members of those groups.
This was a rough flow of what i wanted to do:
* Take JSON document containing all groups
* Parse that document and for each group:
** Call the /members endpoint
** Save each one of those files as a JSON file
* Iterate over all those JSON files and create a members CSV file
In the previous post we created the +++<cite>+++GroupsToJSON+++</cite>+++ task which calls the /groups endpoint on the meetup API and creates the file /tmp/groups.json.
Our new task has that as its initial requirement:
[source,python]
----
class MembersToCSV(luigi.Task):
key = luigi.Parameter()
lat = luigi.Parameter()
lon = luigi.Parameter()
def requires(self):
yield GroupsToJSON(self.key, self.lat, self.lon)
----
But we also want to create a requirement on a task that will make those calls to the /members endpoint and store the result in a JSON file.
One of the patterns that Luigi imposes on us is that each task should only create one file so actually we have a requirement on a collection of tasks rather than just one. It took me a little while to get my head around that!
We don't know the parameters of those tasks at compile time - we can only calculate them by parsing the JSON file produced by +++<cite>+++GroupsToJSON+++</cite>+++.
In Luigi terminology what we want to create is a http://luigi.readthedocs.io/en/stable/tasks.html#dynamic-dependencies[dynamic requirement]. A dynamic requirement is defined inside the run method of a task and can rely on the output of any tasks specified in the requires method, which is exactly what we need.
This code does the delegating part of the job:
[source,python]
----
class MembersToCSV(luigi.Task):
key = luigi.Parameter()
lat = luigi.Parameter()
lon = luigi.Parameter()
def run(self):
outputs = []
for input in self.input():
with input.open('r') as group_file:
groups_json = json.load(group_file)
groups = [str(group['id']) for group in groups_json]
for group_id in groups:
members = MembersToJSON(group_id, self.key)
outputs.append(members.output().path)
yield members
def requires(self):
yield GroupsToJSON(self.key, self.lat, self.lon)
----
Inside our run method we iterate over the output of GroupsToJSON (which is our input) and we yield to another task as well as collecting its outputs in the array outputs that we'll use later. +++<cite>+++MembersToJSON+++</cite>+++ looks like this:
[source,python]
----
class MembersToJSON(luigi.Task):
group_id = luigi.IntParameter()
key = luigi.Parameter()
def run(self):
results = []
uri = "https://api.meetup.com/2/members?&group_id={0}&key={1}".format(self.group_id, self.key)
while True:
if uri is None:
break
r = requests.get(uri)
response = r.json()
for result in response["results"]:
results.append(result)
uri = response["meta"]["next"] if response["meta"]["next"] else None
with self.output().open("w") as output:
json.dump(results, output)
def output(self):
return luigi.LocalTarget("/tmp/members/{0}.json".format(self.group_id))
----
This task generates one file per group containing a list of all the members of that group.
We can now go back to +++<cite>+++MembersToCSV+++</cite>+++ and convert those JSON files into a single CSV file:
[source,python]
----
class MembersToCSV(luigi.Task):
out_path = "/tmp/members.csv"
key = luigi.Parameter()
lat = luigi.Parameter()
lon = luigi.Parameter()
def run(self):
outputs = []
for input in self.input():
with input.open('r') as group_file:
groups_json = json.load(group_file)
groups = [str(group['id']) for group in groups_json]
for group_id in groups:
members = MembersToJSON(group_id, self.key)
outputs.append(members.output().path)
yield members
with self.output().open("w") as output:
writer = csv.writer(output, delimiter=",")
writer.writerow(["id", "name", "joined", "topics", "groupId"])
for path in outputs:
group_id = path.split("/")[-1].replace(".json", "")
with open(path) as json_data:
d = json.load(json_data)
for member in d:
topic_ids = ";".join([str(topic["id"]) for topic in member["topics"]])
if "name" in member:
writer.writerow([member["id"], member["name"], member["joined"], topic_ids, group_id])
def output(self):
return luigi.LocalTarget(self.out_path)
def requires(self):
yield GroupsToJSON(self.key, self.lat, self.lon)
----
We then just need to add our new task as a requirement of the wrapper task:
And we're ready to roll:
[source,bash]
----
$ PYTHONPATH="." luigi --module blog --local-scheduler Meetup --workers 3
----
We've defined the number of workers here as we can execute those calls to the /members endpoint in parallel and there are ~ 600 calls to make.
All the https://gist.github.com/mneedham/de3c67dd198e53303923cf40739fb74c[code from both blog posts is available as a gist] if you want to play around with it.
Any questions/advice let me know in the comments or I'm https://twitter.com/markhneedham[@markhneedham] on twitter. | In this post we show how to create requirements between Luigi tasks where those requirements aren't known at design time i.e. we have dynamic requirements. | null | [
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] | luigi-defining-dynamic-requirements-on-output-files | https://markhneedham.com/blog/2017/03/28/luigi-defining-dynamic-requirements-on-output-files |
false | 2017-03-19 16:40:03 | Python 3: TypeError: Object of type 'dict_values' is not JSON serializable | [
"python"
] | [
"Python"
] | I've recently upgraded to Python 3 (I know, took me a while!) and realised that one of my scripts that writes JSON to a file no longer works!
This is a simplified version of what I'm doing:
[source,python]
----
>>> import json
>>> x = {"mark": {"name": "Mark"}, "michael": {"name": "Michael"} }
>>> json.dumps(x.values())
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/usr/local/Cellar/python3/3.6.0/Frameworks/Python.framework/Versions/3.6/lib/python3.6/json/__init__.py", line 231, in dumps
return _default_encoder.encode(obj)
File "/usr/local/Cellar/python3/3.6.0/Frameworks/Python.framework/Versions/3.6/lib/python3.6/json/encoder.py", line 199, in encode
chunks = self.iterencode(o, _one_shot=True)
File "/usr/local/Cellar/python3/3.6.0/Frameworks/Python.framework/Versions/3.6/lib/python3.6/json/encoder.py", line 257, in iterencode
return _iterencode(o, 0)
File "/usr/local/Cellar/python3/3.6.0/Frameworks/Python.framework/Versions/3.6/lib/python3.6/json/encoder.py", line 180, in default
o.__class__.__name__)
TypeError: Object of type 'dict_values' is not JSON serializable
----
Python 2.7 would be perfectly happy:
[source,python]
----
>>> json.dumps(x.values())
'[{"name": "Michael"}, {"name": "Mark"}]'
----
The difference is in the results returned by the +++<cite>+++values+++</cite>+++ method:
[source,python]
----
# Python 2.7.10
>>> x.values()
[{'name': 'Michael'}, {'name': 'Mark'}]
# Python 3.6.0
>>> x.values()
dict_values([{'name': 'Mark'}, {'name': 'Michael'}])
>>>
----
Python 3 no longer returns an array, instead we have a +++<cite>+++dict_values+++</cite>+++ wrapper around the data.
Luckily this is easy to resolve - we just need to http://stackoverflow.com/questions/16228248/python-simplest-way-to-get-list-of-values-from-dict[wrap the call to +++<cite>+++values+++</cite>+++ with a call to +++<cite>+++list+++</cite>+++]:
[source,python]
----
>>> json.dumps(list(x.values()))
'[{"name": "Mark"}, {"name": "Michael"}]'
----
This versions works with Python 2.7 as well so if I accidentally run the script with an old version the world isn't going to explode. | null | null | [
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] | python-3-typeerror-object-type-dict_values-not-json-serializable | https://markhneedham.com/blog/2017/03/19/python-3-typeerror-object-type-dict_values-not-json-serializable |
false | 2017-03-30 22:38:47 | My top 10 technology podcasts | [
"software-development",
"podcasts"
] | [
"Software Development"
] | For the last six months I’ve been listening to 2 or 3 technology podcasts every day while out running and on my commute and I thought it’d be cool to share some of my favourites.
I listen to all of these on the https://www.podbean.com/[Podbean] android app which seems pretty good. It can’t read the RSS feeds of some podcasts but other than that it’s worked well.
Anyway, on with the podcasts:
[#__a_href_https_softwareengineeringdaily_com_category_podcast_software_engineering_daily_a]
== https://softwareengineeringdaily.com/category/podcast/[Software Engineering Daily]
This is the most reliable of all the podcasts I’ve listened to and a new episode is posted every weekday.
It sweeps across lots of different areas of technology - there’s a bit of software development, a bit of data engineering, and a bit of infrastructure.
Every now and then there’s a focus on a particular topic area or company which I find really interesting e.g. in 2015 there was a week of https://softwareengineeringdaily.com/tag/bitcoin/[Bitcoin focused episodes] and more recently there’s been a https://softwareengineeringdaily.com/tag/stripe/[bunch of episodes about Stripe].
[#__a_href_http_partiallyderivative_com_partially_derivative_a]
== http://partiallyderivative.com/[Partially Derivative]
This one is more of a data science postcast and cover lots of different areas in that space but thankfully keep the conversation at a level that a non data scientist like me can understand.
I especially liked the http://partiallyderivative.com/podcast/2016/11/14/decision-boundary-2016-margin-of-terror[post US election episode] where they talked about the problems with polling and how most election predictions had ended up being wrong.
There’s roughly one new episode a week.
[#__a_href_https_www_oreilly_com_topics_oreilly_bots_podcast_o_reilly_bots_podcast_a]
== https://www.oreilly.com/topics/oreilly-bots-podcast[O’Reilly Bots podcast]
I didn’t know anything about bots before i listened to this podcast and it was quite addictive - i powered through all the episodes in a few weeks.
They cover all sorts of topics that I’d have never thought of - why have developers got interested in bots? How do UIs differ to ones in apps? How do users find out about bots?
I really enjoy listening to this one but it’s been a bit quiet recently.
[#__a_href_http_packetpushers_net_series_datanauts_podcast_datanauts_a]
== http://packetpushers.net/series/datanauts-podcast/[Datanauts]
I found this one really useful for getting the hang of infrastructure topics. I wanted to learn a bit more about Kubernetes a few months ago and they had an episode which gives an overview as well as more detailed episodes.
One neat feature of this podcast is that after each part of an interview the hosts summarise what they picked up from that segment. I like that it gives you a few seconds to think about what you picked up and whether it matches the summary.
Some of the episodes go really deep into specific infrastructure topics and I struggle to follow along but there are enough other ones to keep me happy.
[#__a_href_https_www_becomingadatascientist_com_category_podcast_becoming_a_data_scientist_a]
== https://www.becomingadatascientist.com/category/podcast/[Becoming a Data Scientist]
This one mirrors the journey of https://twitter.com/BecomingDataSci[Renee Teate] getting into data science and bringing everyone along on the journey.
Each episode is paired with a learning exercises for the listener to try and although any of the learning exercises yet I like how some interviews are structured around them. e.g. https://www.becomingadatascientist.com/2016/03/28/becoming-a-data-scientist-podcast-episode-08-sebastian-raschka/[Sebastien Rashka was interviewed about model accuracy] on the week that was being explored in the learning club.
If you’re interested in data science topics but aren’t a data scientist yourself this is a good one to listen to.
[#__a_href_https_twimlai_com_this_week_in_machine_learning_and_ai_podcast_a]
== https://twimlai.com/[This Week In Machine Learning and AI Podcast]
This one mostly goes well over my head but it’s still interesting to listen to other people talk about stuff they’re working on.
There’s a lot of focus on Deep Learning so i think i need to learn a bit more about that and then the episodes will make more sense.
The https://twimlai.com/machine-learning-cybersecurity-evan-wright/[last episode with Evan Wright] was much more accessible. I need more like that one!
[#__a_href_https_thewomenintechshow_com_the_women_in_tech_show_a]
== https://thewomenintechshow.com/[The Women in Tech Show]
I came across https://twitter.com/edaenas[Edaena Salinas] on Software Engineering Daily and didn’t initially realise that Edaena had a podcast until a couple of weeks ago.
There’s lots of interesting content on this one. The episodes on https://thewomenintechshow.com/2017/01/30/data-driven-marketing-with-jessica-jobes/[data driven marketing] and https://thewomenintechshow.com/2016/12/13/unconscious-bias-in-hiring-with-stephanie-lampkin/[unconscious bias] are my favourites of the ones I’ve listened to so far.
[#__a_href_http_thebitcoinpodcast_com_the_bitcoin_podcast_a]
== http://thebitcoinpodcast.com/[The Bitcoin Podcast]
I listened to a few shows about bitcoin on Software Engineering Daily and found this podcast while trying to learn more.
Some of the episodes are general enough that i can follow along but others use a lot of block chain specific terminology that leave me feeling a bit lost.
I especially liked the http://thebitcoinpodcast.com/episode-118/[episode that featured Greg Walker] of http://learnmeabitcoin.com[learnmeabitcoin] fame. Greg uses Neo4j as part of the website and https://www.meetup.com/graphdb-london/events/237954465/[presented at the London Neo4j meetup earlier this week].
[#__a_href_https_changelog_com_gotime_go_time_a]
== https://changelog.com/gotime[Go Time]
This one has a chat based format that I really. They have a cool section called 'free software Friday' at the end of each show where everybody calls out a piece of software or maintainer that they’re grateful for.
I was playing around with Go in November/December last year so it was really helpful in pointing me in the right direction. I haven’t done any stuff recently so it’s more a general interest show for now.
[#__a_href_https_changelog_com_change_log_a]
== https://changelog.com/[Change Log]
This one covers lots of different topics, mostly around different open source projects.
The really cool thing about this one is they get every guest to explain their 'origin story' i.e. how did they get into software and what was their path to the current job. The https://changelog.com/podcast/241[interview with Nathan Sobo about Atom] was particularly good in this respect.
It’s always interesting to hear how other people got started and contrast it with my own experiences.
Another cool feature of this podcast is that they sometimes have episodes where they https://changelog.com/podcast/238[interview people at open source conferences].
[#_that_s_it_folks]
== That’s it folks
That’s all for now. Hopefully there’s one or more in there that you haven’t listened to before.
If you’ve got any suggestions for other ones I should listen to let me know in the comments or send me a message on twitter https://twitter.com/markhneedham[@markhneedham] | A collection of my favourite technology podcasts covering data science, data engineering, bitcoin, Kubernetes, software development, and more. | null | [
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] | top-10-technology-podcasts | https://markhneedham.com/blog/2017/03/30/top-10-technology-podcasts |
false | 2017-03-06 20:52:01 | Neo4j: apoc.date.parse - java.lang.IllegalArgumentException: Illegal pattern character 'T' / java.text.ParseException: Unparseable date: "2012-11-12T08:46:15Z" | [
"neo4j"
] | [
"neo4j"
] | I often find myself wanting to convert date strings into Unix timestamps using https://github.com/neo4j-contrib/neo4j-apoc-procedures[Neo4j's APOC library] and unfortunately some sources don't use the format that https://neo4j-contrib.github.io/neo4j-apoc-procedures/#_date_time_support[+++<cite>+++apoc.date.parse+++</cite>+++] expects.
e.g.
[source,cypher]
----
return apoc.date.parse("2012-11-12T08:46:15Z",'s')
AS ts
Failed to invoke function `apoc.date.parse`:
Caused by: java.lang.IllegalArgumentException: java.text.ParseException: Unparseable date: "2012-11-12T08:46:15Z"
----
We need to define the format explicitly so the https://docs.oracle.com/javase/7/docs/api/java/text/SimpleDateFormat.html[SimpleDataFormat] documentation comes in handy. I tried the following:
[source,cypher]
----
return apoc.date.parse("2012-11-12T08:46:15Z",'s',"yyyy-MM-ddTHH:mm:ssZ")
AS ts
Failed to invoke function `apoc.date.parse`:
Caused by: java.lang.IllegalArgumentException: Illegal pattern character 'T'
----
Hmmm, we need to quote the 'T' character - we can't just include it in the pattern. Let's try again:
[source,cypher]
----
return apoc.date.parse("2012-11-12T08:46:15Z",'s',"yyyy-MM-dd'T'HH:mm:ssZ")
AS ts
Failed to invoke function `apoc.date.parse`:
Caused by: java.lang.IllegalArgumentException: java.text.ParseException: Unparseable date: "2012-11-12T08:46:15Z"
----
The problem now is that we haven't quoted the 'Z' but the error doesn't indicate that - not sure why!
We can either quote the 'Z':
[source,cypher]
----
return apoc.date.parse("2012-11-12T08:46:15Z",'s',"yyyy-MM-dd'T'HH:mm:ss'Z'")
AS ts
╒══════════╕
│"ts" │
╞══════════╡
│1352709975│
└──────────┘
----
Or we can match the timezone using 'XXX':
[source,cypher]
----
return apoc.date.parse("2012-11-12T08:46:15Z",'s',"yyyy-MM-dd'T'HH:mm:ssXXX")
AS ts
╒══════════╕
│"ts" │
╞══════════╡
│1352709975│
└──────────┘
---- | null | null | [
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] | neo4j-apoc-date-parse-java-lang-illegalargumentexception-illegal-pattern-character-t-java-text-parseexception-unparseable-date-2012-11-12t084615z | https://markhneedham.com/blog/2017/03/06/neo4j-apoc-date-parse-java-lang-illegalargumentexception-illegal-pattern-character-t-java-text-parseexception-unparseable-date-2012-11-12t084615z |
false | 2017-03-25 14:09:59 | Luigi: An ExternalProgramTask example - Converting JSON to CSV | [
"python",
"luigi",
"data-science",
"data-engineering"
] | [
"Python"
] | I've been playing around with the Python library https://github.com/spotify/luigi[Luigi] which is used to build pipelines of batch jobs and I struggled to find an example of an http://luigi.readthedocs.io/en/stable/_modules/luigi/contrib/external_program.html#ExternalProgramTask[ExternalProgramTask] so this is my attempt at filling that void.
[.alignnone.size-full.wp-image-7069]
image::{{<siteurl>}}/uploads/2017/03/luigi.png[Luigi - the Python data library for building data science pipelines,322]
I'm building a little data pipeline to get data from the https://www.meetup.com/meetup_api/[meetup.com API] and put it into CSV files that can be loaded into https://neo4j.com/developer/[Neo4j] using the https://neo4j.com/developer/guide-import-csv/[LOAD CSV] command.
The first task I created calls the +++<cite>+++/groups+++</cite>+++ endpoint and saves the result into a JSON file:
[source,python]
----
import luigi
import requests
import json
from collections import Counter
class GroupsToJSON(luigi.Task):
key = luigi.Parameter()
lat = luigi.Parameter()
lon = luigi.Parameter()
def run(self):
seed_topic = "nosql"
uri = "https://api.meetup.com/2/groups?&topic={0}&lat={1}&lon={2}&key={3}".format(seed_topic, self.lat, self.lon, self.key)
r = requests.get(uri)
all_topics = [topic["urlkey"] for result in r.json()["results"] for topic in result["topics"]]
c = Counter(all_topics)
topics = [entry[0] for entry in c.most_common(10)]
groups = {}
for topic in topics:
uri = "https://api.meetup.com/2/groups?&topic={0}&lat={1}&lon={2}&key={3}".format(topic, self.lat, self.lon, self.key)
r = requests.get(uri)
for group in r.json()["results"]:
groups[group["id"]] = group
with self.output().open('w') as groups_file:
json.dump(list(groups.values()), groups_file, indent=4, sort_keys=True)
def output(self):
return luigi.LocalTarget("/tmp/groups.json")
----
We define a few parameters at the top of the class which will be passed in when this task is executed. The most interesting lines of the +++<cite>+++run+++</cite>+++ function are the last couple where we write the JSON to a file. +++<cite>+++self.output()+++</cite>+++ refers to the target defined in the +++<cite>+++output+++</cite>+++ function which in this case is +++<cite>+++/tmp/groups.json+++</cite>+++.
Now we need to create a task to convert that JSON file into CSV format. The https://stedolan.github.io/jq/[jq] command line tool does this job well so we'll use that. The following task does the job:
[source,python]
----
from luigi.contrib.external_program import ExternalProgramTask
class GroupsToCSV(luigi.contrib.external_program.ExternalProgramTask):
file_path = "/tmp/groups.csv"
key = luigi.Parameter()
lat = luigi.Parameter()
lon = luigi.Parameter()
def program_args(self):
return ["./groups.sh", self.input()[0].path, self.output().path]
def output(self):
return luigi.LocalTarget(self.file_path)
def requires(self):
yield GroupsToJSON(self.key, self.lat, self.lon)
----
+++<cite>+++groups.sh+++</cite>+++
[source,bash]
----
#!/bin/bash
in=${1}
out=${2}
echo "id,name,urlname,link,rating,created,description,organiserName,organiserMemberId" > ${out}
jq -r '.[] | [.id, .name, .urlname, .link, .rating, .created, .description, .organizer.name, .organizer.member_id] | @csv' ${in} >> ${out}
----
I wanted to call +++<cite>+++jq+++</cite>+++ directly from the Python code but I couldn't figure out how to do it so putting that code in a shell script is my workaround.
The last piece of the puzzle is a wrapper task that launches the others:
[source,python]
----
import os
class Meetup(luigi.WrapperTask):
def run(self):
print("Running Meetup")
def requires(self):
key = os.environ['MEETUP_API_KEY']
lat = os.getenv('LAT', "51.5072")
lon = os.getenv('LON', "0.1275")
yield GroupsToCSV(key, lat, lon)
----
Now we're ready to run the tasks:
[source,bash]
----
$ PYTHONPATH="." luigi --module blog --local-scheduler Meetup
DEBUG: Checking if Meetup() is complete
DEBUG: Checking if GroupsToCSV(key=xxx, lat=51.5072, lon=0.1275) is complete
INFO: Informed scheduler that task Meetup__99914b932b has status PENDING
DEBUG: Checking if GroupsToJSON(key=xxx, lat=51.5072, lon=0.1275) is complete
INFO: Informed scheduler that task GroupsToCSV_xxx_51_5072_0_1275_e07372cebf has status PENDING
INFO: Informed scheduler that task GroupsToJSON_xxx_51_5072_0_1275_e07372cebf has status PENDING
INFO: Done scheduling tasks
INFO: Running Worker with 1 processes
DEBUG: Asking scheduler for work...
DEBUG: Pending tasks: 3
INFO: [pid 4452] Worker Worker(salt=970508581, workers=1, host=Marks-MBP-4, username=markneedham, pid=4452) running GroupsToJSON(key=xxx, lat=51.5072, lon=0.1275)
INFO: [pid 4452] Worker Worker(salt=970508581, workers=1, host=Marks-MBP-4, username=markneedham, pid=4452) done GroupsToJSON(key=xxx, lat=51.5072, lon=0.1275)
DEBUG: 1 running tasks, waiting for next task to finish
INFO: Informed scheduler that task GroupsToJSON_xxx_51_5072_0_1275_e07372cebf has status DONE
DEBUG: Asking scheduler for work...
DEBUG: Pending tasks: 2
INFO: [pid 4452] Worker Worker(salt=970508581, workers=1, host=Marks-MBP-4, username=markneedham, pid=4452) running GroupsToCSV(key=xxx, lat=51.5072, lon=0.1275)
INFO: Running command: ./groups.sh /tmp/groups.json /tmp/groups.csv
INFO: [pid 4452] Worker Worker(salt=970508581, workers=1, host=Marks-MBP-4, username=markneedham, pid=4452) done GroupsToCSV(key=xxx, lat=51.5072, lon=0.1275)
DEBUG: 1 running tasks, waiting for next task to finish
INFO: Informed scheduler that task GroupsToCSV_xxx_51_5072_0_1275_e07372cebf has status DONE
DEBUG: Asking scheduler for work...
DEBUG: Pending tasks: 1
INFO: [pid 4452] Worker Worker(salt=970508581, workers=1, host=Marks-MBP-4, username=markneedham, pid=4452) running Meetup()
Running Meetup
INFO: [pid 4452] Worker Worker(salt=970508581, workers=1, host=Marks-MBP-4, username=markneedham, pid=4452) done Meetup()
DEBUG: 1 running tasks, waiting for next task to finish
INFO: Informed scheduler that task Meetup__99914b932b has status DONE
DEBUG: Asking scheduler for work...
DEBUG: Done
DEBUG: There are no more tasks to run at this time
INFO: Worker Worker(salt=970508581, workers=1, host=Marks-MBP-4, username=markneedham, pid=4452) was stopped. Shutting down Keep-Alive thread
INFO:
===== Luigi Execution Summary =====
Scheduled 3 tasks of which:
* 3 ran successfully:
- 1 GroupsToCSV(key=xxx, lat=51.5072, lon=0.1275)
- 1 GroupsToJSON(key=xxx, lat=51.5072, lon=0.1275)
- 1 Meetup()
This progress looks :) because there were no failed tasks or missing external dependencies
===== Luigi Execution Summary =====
----
Looks good! Let's quickly look at our CSV file:
[source,bash]
----
$ head -n10 /tmp/groups.csv
id,name,urlname,link,rating,created,description,organiserName,organiserMemberId
1114381,"London NoSQL, MySQL, Open Source Community","london-nosql-mysql","https://www.meetup.com/london-nosql-mysql/",4.28,1208505614000,"<p>Meet others in London interested in NoSQL, MySQL, and Open Source Databases.</p>
","Sinead Lawless",185675230
1561841,"Enterprise Search London Meetup","es-london","https://www.meetup.com/es-london/",4.66,1259157419000,"<p>Enterprise Search London is a meetup for anyone interested in building search and discovery experiences — from intranet search and site search, to advanced discovery applications and beyond.</p>
<p>Disclaimer: This meetup is NOT about SEO or search engine marketing.</p>
<p><strong>What people are saying:</strong></p>
<ul>
<li><span>""Join this meetup if you have a passion for enterprise search and user experience that you would like to share with other able-minded practitioners."" — Vegard Sandvold</span></li>
<li><span>""Full marks for vision and execution. Looking forward to the next Meetup."" — Martin White</span></li>
<li><span>“Consistently excellent” — Helen Lippell</span></li>
</ul>
----
Sweet! And what if we run it again?
[source,bash]
----
$ PYTHONPATH="." luigi --module blog --local-scheduler Meetup
DEBUG: Checking if Meetup() is complete
INFO: Informed scheduler that task Meetup__99914b932b has status DONE
INFO: Done scheduling tasks
INFO: Running Worker with 1 processes
DEBUG: Asking scheduler for work...
DEBUG: Done
DEBUG: There are no more tasks to run at this time
INFO: Worker Worker(salt=172768377, workers=1, host=Marks-MBP-4, username=markneedham, pid=4531) was stopped. Shutting down Keep-Alive thread
INFO:
===== Luigi Execution Summary =====
Scheduled 1 tasks of which:
* 1 present dependencies were encountered:
- 1 Meetup()
Did not run any tasks
This progress looks :) because there were no failed tasks or missing external dependencies
===== Luigi Execution Summary =====
----
As expected nothing happens since our dependencies are already satisfied and we have our first Luigi pipeline up and running. | A worked example showing how to call an external program with Luigi - a Python tool for building complex data pipelines. | null | [
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] | luigi-externalprogramtask-example-converting-json-csv | https://markhneedham.com/blog/2017/03/25/luigi-externalprogramtask-example-converting-json-csv |
false | 2017-04-03 05:49:53 | AWS Lambda: Encrypted environment variables | [
"lambda",
"aws-lambda"
] | [
"Software Development"
] | Continuing on from my post showing how to create a http://www.markhneedham.com/blog/2017/04/02/aws-lambda-programatically-create-a-python-hello-world-function/['Hello World' AWS lambda function] I wanted to pass encrypted environment variables to my function.
The following function takes in both an encrypted and unencrypted variable and prints them out.
*Don't print out encrypted variables in a real function, this is just so we can see the example working!*
[source,python]
----
import boto3
import os
from base64 import b64decode
def lambda_handler(event, context):
encrypted = os.environ['ENCRYPTED_VALUE']
decrypted = boto3.client('kms').decrypt(CiphertextBlob=b64decode(encrypted))['Plaintext']
# Don't print out your decrypted value in a real function! This is just to show how it works.
print("Decrypted value:", decrypted)
plain_text = os.environ["PLAIN_TEXT_VALUE"]
print("Plain text:", plain_text)
----
Now we'll zip up our function into HelloWorldEncrypted.zip, ready to send to AWS.
[source,bash]
----
zip HelloWorldEncrypted.zip HelloWorldEncrypted.py
----
Now it’s time to upload our function to AWS and create the associated environment variables.
If you’re using a Python editor then you’ll need to install boto3 locally to keep the editor happy but you don’t need to include boto3 in the code you send to AWS Lambda - it comes pre-installed.
Now we write the following code to automate the creation of our Lambda function:
[source,python]
----
import boto3
from base64 import b64encode
fn_name = "HelloWorldEncrypted"
kms_key = "arn:aws:kms:[aws-zone]:[your-aws-id]:key/[your-kms-key-id]"
fn_role = 'arn:aws:iam::[your-aws-id]:role/lambda_basic_execution'
lambda_client = boto3.client('lambda')
kms_client = boto3.client('kms')
encrypt_me = "abcdefg"
encrypted = b64encode(kms_client.encrypt(Plaintext=encrypt_me, KeyId=kms_key)["CiphertextBlob"])
plain_text = 'hijklmno'
lambda_client.create_function(
FunctionName=fn_name,
Runtime='python2.7',
Role=fn_role,
Handler="{0}.lambda_handler".format(fn_name),
Code={ 'ZipFile': open("{0}.zip".format(fn_name), 'rb').read(),},
Environment={
'Variables': {
'ENCRYPTED_VALUE': encrypted,
'PLAIN_TEXT_VALUE': plain_text,
}
},
KMSKeyArn=kms_key
)
----
The tricky bit for me here was figuring out that I needed to pass the value that I wanted to base 64 encode the output of the value encrypted by the KMS client. The KMS client relies on a KMS key that http://docs.aws.amazon.com/cli/latest/reference/kms/create-key.html[we need to setup]. We can see a list of all our KMS keys by running the following command:
[source,bash]
----
$ aws kms list-keys
----
The format of these keys is +++<cite>+++arn:aws:kms:[zone]:[account-id]:key/[key-id]+++</cite>+++.
Now let’s try executing our Lambda function from the AWS console:
[source,bash]
----
$ python CreateHelloWorldEncrypted.py
----
Let's check it got created:
[source,bash]
----
$ aws lambda list-functions --query "Functions[*].FunctionName"
[
"HelloWorldEncrypted",
]
----
And now let's execute the function:
[source,bash]
----
$ aws lambda invoke --function-name HelloWorldEncrypted --invocation-type RequestResponse --log-type Tail /tmp/out | jq ".LogResult"
"U1RBUlQgUmVxdWVzdElkOiA5YmNlM2E1MC0xODMwLTExZTctYjFlNi1hZjQxZDYzMzYxZDkgVmVyc2lvbjogJExBVEVTVAooJ0RlY3J5cHRlZCB2YWx1ZTonLCAnYWJjZGVmZycpCignUGxhaW4gdGV4dDonLCAnaGlqa2xtbm8nKQpFTkQgUmVxdWVzdElkOiA5YmNlM2E1MC0xODMwLTExZTctYjFlNi1hZjQxZDYzMzYxZDkKUkVQT1JUIFJlcXVlc3RJZDogOWJjZTNhNTAtMTgzMC0xMWU3LWIxZTYtYWY0MWQ2MzM2MWQ5CUR1cmF0aW9uOiAzNjAuMDQgbXMJQmlsbGVkIER1cmF0aW9uOiA0MDAgbXMgCU1lbW9yeSBTaXplOiAxMjggTUIJTWF4IE1lbW9yeSBVc2VkOiAyNCBNQgkK"
----
That's a bit hard to read, some decoding is needed:
[source,bash]
----
$ echo "U1RBUlQgUmVxdWVzdElkOiA5YmNlM2E1MC0xODMwLTExZTctYjFlNi1hZjQxZDYzMzYxZDkgVmVyc2lvbjogJExBVEVTVAooJ0RlY3J5cHRlZCB2YWx1ZTonLCAnYWJjZGVmZycpCignUGxhaW4gdGV4dDonLCAnaGlqa2xtbm8nKQpFTkQgUmVxdWVzdElkOiA5YmNlM2E1MC0xODMwLTExZTctYjFlNi1hZjQxZDYzMzYxZDkKUkVQT1JUIFJlcXVlc3RJZDogOWJjZTNhNTAtMTgzMC0xMWU3LWIxZTYtYWY0MWQ2MzM2MWQ5CUR1cmF0aW9uOiAzNjAuMDQgbXMJQmlsbGVkIER1cmF0aW9uOiA0MDAgbXMgCU1lbW9yeSBTaXplOiAxMjggTUIJTWF4IE1lbW9yeSBVc2VkOiAyNCBNQgkK" | base64 --decode
START RequestId: 9bce3a50-1830-11e7-b1e6-af41d63361d9 Version: $LATEST
('Decrypted value:', 'abcdefg')
('Plain text:', 'hijklmno')
END RequestId: 9bce3a50-1830-11e7-b1e6-af41d63361d9
REPORT RequestId: 9bce3a50-1830-11e7-b1e6-af41d63361d9 Duration: 360.04 ms Billed Duration: 400 ms Memory Size: 128 MB Max Memory Used: 24 MB
----
And it worked, hoorah! | In this post we look at how to pass encrypted environment variables to an AWS lambda function and then decrypt them inside the function. | null | [
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] | aws-lambda-encrypted-environment-variables | https://markhneedham.com/blog/2017/04/03/aws-lambda-encrypted-environment-variables |
false | 2017-04-05 23:49:45 | AWS Lambda: Programmatically scheduling a CloudWatchEvent | [
"lambda",
"aws",
"aws-lambda"
] | [
"Software Development"
] | I recently wrote a blog post showing how to http://www.markhneedham.com/blog/2017/04/02/aws-lambda-programatically-create-a-python-hello-world-function/[create a Python 'Hello World' AWS lambda function] and manually invoke it, but what I really wanted to do was have it run automatically every hour.
To achieve that in AWS Lambda land we need to create a http://docs.aws.amazon.com/AmazonCloudWatch/latest/events/WhatIsCloudWatchEvents.html[CloudWatch Event]. The documentation describes them as follows:
____
Using simple rules that you can quickly set up, you can match events and route them to one or more target functions or streams.
____
image::{{<siteurl>}}/uploads/2017/04/2017-04-05_23-06-36.png[2017 04 05 23 06 36,364]
This is actually really easy from the Amazon web console as you just need to click the 'Triggers' tab and then 'Add trigger'. It's not obvious that there are actually three steps are involved as they're abstracted from you.
So what are http://docs.aws.amazon.com/AmazonCloudWatch/latest/events/RunLambdaSchedule.html[the steps]?
. Create rule
. Give permission for that rule to execute
. Map the rule to the function
I forgot to do step 2) initially and then you just end up with a rule that never triggers, which isn't particularly useful.
The following code creates a 'Hello World' lambda function and runs it once an hour:
[source,python]
----
import boto3
lambda_client = boto3.client('lambda')
events_client = boto3.client('events')
fn_name = "HelloWorld"
fn_role = 'arn:aws:iam::[your-aws-id]:role/lambda_basic_execution'
fn_response = lambda_client.create_function(
FunctionName=fn_name,
Runtime='python2.7',
Role=fn_role,
Handler="{0}.lambda_handler".format(fn_name),
Code={'ZipFile': open("{0}.zip".format(fn_name), 'rb').read(), },
)
fn_arn = fn_response['FunctionArn']
frequency = "rate(1 hour)"
name = "{0}-Trigger".format(fn_name)
rule_response = events_client.put_rule(
Name=name,
ScheduleExpression=frequency,
State='ENABLED',
)
lambda_client.add_permission(
FunctionName=fn_name,
StatementId="{0}-Event".format(name),
Action='lambda:InvokeFunction',
Principal='events.amazonaws.com',
SourceArn=rule_response['RuleArn'],
)
events_client.put_targets(
Rule=name,
Targets=[
{
'Id': "1",
'Arn': fn_arn,
},
]
)
----
We can now check if our trigger has been configured correctly:
[source,bash]
----
$ aws events list-rules --query "Rules[?Name=='HelloWorld-Trigger']"
[
{
"State": "ENABLED",
"ScheduleExpression": "rate(1 hour)",
"Name": "HelloWorld-Trigger",
"Arn": "arn:aws:events:us-east-1:[your-aws-id]:rule/HelloWorld-Trigger"
}
]
$ aws events list-targets-by-rule --rule HelloWorld-Trigger
{
"Targets": [
{
"Id": "1",
"Arn": "arn:aws:lambda:us-east-1:[your-aws-id]:function:HelloWorld"
}
]
}
$ aws lambda get-policy --function-name HelloWorld
{
"Policy": "{\"Version\":\"2012-10-17\",\"Id\":\"default\",\"Statement\":[{\"Sid\":\"HelloWorld-Trigger-Event\",\"Effect\":\"Allow\",\"Principal\":{\"Service\":\"events.amazonaws.com\"},\"Action\":\"lambda:InvokeFunction\",\"Resource\":\"arn:aws:lambda:us-east-1:[your-aws-id]:function:HelloWorld\",\"Condition\":{\"ArnLike\":{\"AWS:SourceArn\":\"arn:aws:events:us-east-1:[your-aws-id]:rule/HelloWorld-Trigger\"}}}]}"
}
----
All looks good so we're done! | Creating triggers in AWS Lambda is really easy from the console but we want to automate that process. In this post we'll create triggers programatically. | null | [
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] | aws-lambda-programatically-scheduling-a-cloudwatchevent | https://markhneedham.com/blog/2017/04/05/aws-lambda-programatically-scheduling-a-cloudwatchevent |
false | 2017-04-02 22:11:47 | AWS Lambda: Programatically create a Python 'Hello World' function | [
"aws",
"aws-lambda"
] | [
"Software Development"
] | I've been playing around with http://docs.aws.amazon.com/lambda/latest/dg/welcome.html[AWS Lambda] over the last couple of weeks and I wanted to automate the creation of these functions and all their surrounding config.
Let's say we have the following +++<cite>+++Hello World+++</cite>+++ function: ~~~python def lambda_handler(event, context): print("Hello world") ~~~
To upload it to AWS we need to put it inside a zip file so let's do that: ~~~bash $ zip HelloWorld.zip HelloWorld.py ~~~ ~~~bash $ unzip -l HelloWorld.zip Archive: HelloWorld.zip Length Date Time Name -------- ---- ---- ---- 61 04-02-17 22:04 HelloWorld.py -------- ------- 61 1 file ~~~
Now we're ready to write a script to create our AWS lambda function. ~~~python import boto3 lambda_client = boto3.client('lambda') fn_name = "HelloWorld" fn_role = 'arn:aws:iam::[your-aws-id]:role/lambda_basic_execution' lambda_client.create_function( FunctionName=fn_name, Runtime='python2.7', Role=fn_role, Handler="\{0}.lambda_handler".format(fn_name), Code={'ZipFile': open("\{0}.zip".format(fn_name), 'rb').read(), }, ) ~~~
+++<cite>+++[your-aws-id]+++</cite>+++ needs to be replaced with the identifier of our AWS account. We can find that out be running http://stackoverflow.com/questions/33791069/quick-way-to-get-aws-account-number-from-the-cli-tools[the following command] against the AWS CLI: ~~~bash $ aws ec2 describe-security-groups --query 'SecurityGroups[0].OwnerId' --output text 123456789012 ~~~
Now we can create our function: ~~~bash $ python CreateHelloWorld.py ~~~
image::{{<siteurl>}}/uploads/2017/04/2017-04-02_23-07-38.png[2017 04 02 23 07 38,262]
And if we test the function we'll get the expected output:
image::{{<siteurl>}}/uploads/2017/04/2017-04-02_23-02-59.png[2017 04 02 23 02 59,376] | Learn how to programatically create a Python AWS Lambda function and all the surrounding config. | null | [
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] | aws-lambda-programatically-create-a-python-hello-world-function | https://markhneedham.com/blog/2017/04/02/aws-lambda-programatically-create-a-python-hello-world-function |
false | 2017-04-27 20:59:56 | Python: Flask - Generating a static HTML page | [
"python"
] | [
"Python"
] | Whenever I need to quickly spin up a web application Python's http://flask.pocoo.org[Flask] library is my go to tool but I recently found myself wanting to generate a static HTML to upload to S3 and wondered if I could use it for that as well.
It's actually not too tricky. If we're in http://stackoverflow.com/questions/31830663/how-to-render-template-in-flask-without-using-request-context[the scope of the app context] then we have access to the template rendering that we'd normally use when serving the response to a web request.
The following code will generate a HTML file based on a template file</a> +++<cite>+++templates/blog.html+++<cite>+++: </p> ~~~python from flask import render_template import flask app = flask.Flask('my app') if __name__ == "__main__": with app.app_context(): rendered = render_template('blog.html', \ title = "My Generated Page", \ people = [{"name": "Mark"}, {"name": "Michael"}]) print(rendered) ~~~
+++<cite>+++templates/blog.html+++</cite>+++ ~~~html <!doctype html> +++<html>++++++<head>++++++<title>+++{{ title }}+++</title>++++++</head>++++++<body>+++* {{ person.name }}+++</body>++++++</html>+++ ~~~
If we execute the Python script it will generate the following HTML: ~~~bash $ python blog.py <!doctype html> +++<html>++++++<head>++++++<title>+++My Generated Page+++</title>++++++</head>++++++<body>+++= My Generated Page
* Mark
* Michael+++</body>++++++</html>+++ ~~~
And we can finish off by redirecting that output into a file: ~~~bash $ python blog.py > generated_blog.html ~~~
We could also write to the file from Python but this seems just as easy! +++</cite>++++++</cite>+++ | Learn how to generate a static HTML page using Python's Flask library. | null | [
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] | python-flask-generating-a-static-html-page | https://markhneedham.com/blog/2017/04/27/python-flask-generating-a-static-html-page |
false | 2017-04-29 15:36:36 | Leaflet: Mapping Strava runs/polylines on Open Street Map | [
"python",
"leafletjs",
"strava"
] | [
"Javascript"
] | I'm a big https://www.strava.com/athletes/6958432[Strava] user and spent a bit of time last weekend playing around with https://strava.github.io/api/v3/athlete/[their API] to work out how to map all my runs.
image::{{<siteurl>}}/uploads/2017/04/2017-04-29_15-56-06.png[2017 04 29 15 56 06,180]
== Strava API and polylines
This is a two step process:
. Call the +++<cite>+++/athlete/activities/+++</cite>+++ endpoint to get a list of all my activities
. For each of those activities call +++<cite>+++/activities/[activityId]+++</cite>+++ endpoint to get more detailed information for each activity</cite>
That second API returns a 'polyline' property which the https://strava.github.io/api/#polylines[documentation] describes as follows:
____
Activity and segment API requests may include summary polylines of their respective routes. The values are string encodings of the latitude and longitude points using the https://developers.google.com/maps/documentation/utilities/polylinealgorithm[Google encoded polyline algorithm format].
____
If we navigate to that page we get the following explanation:
____
Polyline encoding is a lossy compression algorithm that allows you to store a series of coordinates as a single string.
____
I tried out a couple of my polylines using the https://developers.google.com/maps/documentation/utilities/polylineutility[interactive polyline encoder utility] which worked well once I realised that I needed to escape backslashes ("\") in the polyline before pasting it into the tool.
Now that I'd figured out how to map one run it was time to automate the process.
== Leaflet and OpenStreetMap
I've previously had a good experience using http://leafletjs.com/[Leaflet] so I was keen to use that and luckily came across http://stackoverflow.com/a/40728445/1093511[a Stack Overflow answer] showing how to do what I wanted.
I created a HTML file and manually pasted in a couple of my runs (not forgetting to escape those backslashes!) to check that they worked:
+++<cite>+++blog.html+++</cite>+++
[source,html]
----
<html>
<head>
<title>Mapping my runs</title>
</head>
<body>
<script src="http://cdn.leafletjs.com/leaflet-0.7/leaflet.js"></script>
<script type="text/javascript" src="https://rawgit.com/jieter/Leaflet.encoded/master/Polyline.encoded.js"></script>
<link rel="stylesheet" href="http://cdn.leafletjs.com/leaflet-0.7/leaflet.css" />
<div id="map" style="width: 100%; height: 100%"></div>
<script>
var map = L.map('map').setView([55.609818, 13.003286], 13);
L.tileLayer(
'http://{s}.tile.openstreetmap.org/{z}/{x}/{y}.png', {
maxZoom: 18,
}).addTo(map);
var encodedRoutes = [
"{zkrIm`inANPD?BDXGPKLATHNRBRFtAR~AFjAHl@D|ALtATj@HHJBL?`@EZ?NQ\\Y^MZURGJKR]RMXYh@QdAWf@[~@aAFGb@?j@YJKBU@m@FKZ[NSPKTCRJD?`@Wf@Wb@g@HCp@Qh@]z@SRMRE^EHJZnDHbBGPHb@NfBTxBN|DVbCBdA^lBFl@Lz@HbBDl@Lr@Bb@ApCAp@Ez@g@bEMl@g@`B_AvAq@l@ QF]Rs@Nq@CmAVKCK?_@Nw@h@UJIHOZa@xA]~@UfASn@U`@_@~@[d@Sn@s@rAs@dAGN?NVhAB\\Ox@@b@S|A?Tl@jBZpAt@vBJhATfGJn@b@fARp@H^Hx@ARGNSTIFWHe@AGBOTAP@^\\zBMpACjEWlEIrCKl@i@nAk@}@}@yBOWSg@kAgBUk@Mu@[mC?QLIEUAuAS_E?uCKyCA{BH{DDgF`AaEr@uAb@oA~@{AE}AKw@ g@qAU[_@w@[gAYm@]qAEa@FOXg@JGJ@j@o@bAy@NW?Qe@oCCc@SaBEOIIEQGaAe@kC_@{De@cE?KD[H[P]NcAJ_@DGd@Gh@UHI@Ua@}Bg@yBa@uDSo@i@UIICQUkCi@sCKe@]aAa@oBG{@G[CMOIKMQe@IIM@KB]Tg@Nw@^QL]NMPMn@@\\Lb@P~@XT",
"u}krIq_inA_@y@My@Yu@OqAUsA]mAQc@CS@o@FSHSp@e@n@Wl@]ZCFEBK?OC_@Qw@?m@CSK[]]EMBeAA_@m@qEAg@UoCAaAMs@IkBMoACq@SwAGOYa@IYIyA_@kEMkC]{DEaAScC@yEHkGA_ALsCBiA@mCD{CCuAZcANOH@HDZl@Z`@RFh@\\TDT@ZVJBPMVGLM\\Mz@c@NCPMXERO|@a@^Ut@s@p@KJAJ Bd@EHEXi@f@a@\\g@b@[HUD_B@uADg@DQLCLD~@l@`@J^TF?JANQ\\UbAyABEZIFG`@o@RAJEl@_@ZENDDIA[Ki@BURQZaARODKVs@LSdAiAz@G`BU^A^GT@PRp@zARXRn@`BlDHt@ZlAFh@^`BX|@HHHEf@i@FAHHp@bBd@v@DRAVMl@i@v@SROXm@tBILOTOLs@NON_@t@KX]h@Un@k@\\c@h@Ud@]ZGNKp@Sj@KJo@ b@W`@UPOX]XWd@UF]b@WPOAIBSf@QVi@j@_@V[b@Uj@YtAEFCCELARBn@`@lBjAzD^vB^hB?LENURkAv@[Ze@Xg@Py@p@QHONMA[HGAWE_@Em@Hg@AMCG@QHq@Cm@M[Jy@?UJIA{@Ae@KI@GFKNIX[QGAcAT[JK?OVMFK@IAIUKAYJI?QKUCGFIZCXDtAHl@@p@LjBCZS^ERAn@Fj@Br@Hn@HzAHh@RfD?j@TnCTlA NjANb@\\z@TtARr@P`AFnAGfBG`@CFE?"
]
for (let encoded of encodedRoutes) {
var coordinates = L.Polyline.fromEncoded(encoded).getLatLngs();
L.polyline(
coordinates,
{
color: 'blue',
weight: 2,
opacity: .7,
lineJoin: 'round'
}
).addTo(map);
}
</script>
</body>
</html>
----
We can spin up a Python web server over that HTML file to see how it renders:
[source,bash]
----
$ python -m http.server
Serving HTTP on 0.0.0.0 port 8000 (http://0.0.0.0:8000/) ...
----
And below we can see both runs plotted on the map.
image::{{<siteurl>}}/uploads/2017/04/2017-04-29_15-53-28.png[2017 04 29 15 53 28,598]
== Automating Strava API to Open Street Map
The final step is to automate the whole thing so that I can see all of my runs.
I wrote the following script to call the Strava API and save the polyline for every run to a CSV file:
[source,python]
----
import requests
import os
import sys
import csv
token = os.environ["TOKEN"]
headers = {'Authorization': "Bearer {0}".format(token)}
with open("runs.csv", "w") as runs_file:
writer = csv.writer(runs_file, delimiter=",")
writer.writerow(["id", "polyline"])
page = 1
while True:
r = requests.get("https://www.strava.com/api/v3/athlete/activities?page={0}".format(page), headers = headers)
response = r.json()
if len(response) == 0:
break
else:
for activity in response:
r = requests.get("https://www.strava.com/api/v3/activities/{0}?include_all_efforts=true".format(activity["id"]), headers = headers)
polyline = r.json()["map"]["polyline"]
writer.writerow([activity["id"], polyline])
page += 1
----
I then wrote a simple script using http://flask.pocoo.org/[Flask] to parse the CSV files and send a JSON representation of my runs to a slightly modified version of the HTML page that I described above:
[source,python]
----
from flask import Flask
from flask import render_template
import csv
import json
app = Flask(__name__)
@app.route('/')
def my_runs():
runs = []
with open("runs.csv", "r") as runs_file:
reader = csv.DictReader(runs_file)
for row in reader:
runs.append(row["polyline"])
return render_template("leaflet.html", runs = json.dumps(runs))
if __name__ == "__main__":
app.run(port = 5001)
----
I changed the following line in the HTML file:
[source,html]
----
var encodedRoutes = {{ runs|safe }};
----
Now we can launch our Flask web server:
[source,bash]
----
$ python app.py
* Running on http://127.0.0.1:5001/ (Press CTRL+C to quit)
----
And if we navigate to +++<cite>+++http://127.0.0.1:5001/+++</cite>+++ we can see all my runs that went near Westminster:
image::{{<siteurl>}}/uploads/2017/04/2017-04-29_16-32-00.png[2017 04 29 16 32 00,336]
The full code for all the files I've described in this post are https://gist.github.com/mneedham/34b923beb7fd72f8fe6ee433c2b27d73[available on github]. If you give it a try you'll need to provide your Strava Token in the 'TOKEN' environment variable before running +++<cite>+++extract_runs.py+++</cite>+++.
Hope this was helpful and if you have any questions ask me in the comments. | Learn how to take the polyline returned by the Strava API and plot it onto Open Street Map using the Leaflet javascript library. | null | [
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false | 2017-05-27 11:31:08 | GraphQL-Europe: A trip to Berlin | [
"graphql",
"graphqleu"
] | [
"Conferences"
] | Last weekend my colleagues https://twitter.com/lyonwj?lang=en[Will], https://twitter.com/mesirii?lang=en[Michael], https://twitter.com/oskarhane?lang=en[Oskar], and I went to Berlin to spend Sunday at the https://graphql-europe.org/[GraphQL Europe] conference in Berlin.
image::{{<siteurl>}}/uploads/2017/05/IMG_20170521_084449.jpg[IMG 20170521 084449]
Neo4j sponsored the conference as we've been experimenting with building a GraphQL to Neo4j integration and wanted to get some feedback from the community as well as learn what's going on in GraphQL land.
Will and Michael have https://neo4j.com/blog/graphql-neo4j-graph-database-integration/[written about their experience] where they talk more about the hackathon we hosted so I'll cover it more from a personal perspective.
The first thing that stood out for me was how busy it was - I knew GraphQL was pretty hipster but I wasn't expecting there to be ~ 300 attendees.
The venue was amazing - the nHow Hotel is located right next to the Spree River so there were great views to be had during the breaks. It also helped that it was really sunny for the whole day!
image::{{<siteurl>}}/uploads/2017/05/IMG_20170521_103636.jpg[IMG 20170521 103636]
I spent most of the day hanging out at the Neo4j booth which was good fun - several people pointed out that an integration between Neo4j and GraphQL made a lot of sense given that *GraphQL talks about the application graph and Neo4j graphs in general*.
I managed to attend a few of the talks, including one by Brooks Swinnerton from GitHub who announced that they'd be https://developer.github.com/v4/[moving to GraphQL for v4 of their API].
The most interesting part of the talk for me was when Brooks said they'd directed requests for their REST API to the GraphQL one behind the scenes for a while now to check that it could handle the load.
____
GitHub is moving to GraphQL for v4 of our API because it offers significantly more flexibility for our integrators. The ability to define precisely the data you want--and only the data you want--is a powerful advantage over the REST API v3 endpoints.
____
I think twitter may be doing something similar based on this tweet by https://twitter.com/tgvashworth[Tom Ashworth]:
++++
<blockquote class="twitter-tweet"><p lang="en" dir="ltr">Heh. Twitter GraphQL is quietly serving more than 40 million queries per day. Tiny at Twitter scale but not a bad start.</p>— Tom Ashworth (@tgvashworth) <a href="https://twitter.com/tgvashworth/status/862049341472522240?ref_src=twsrc%5Etfw">May 9, 2017</a></blockquote> <script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
++++
From what I could tell the early pick up of GraphQL seems to be from the front end of applications - several of the attendees had attended https://www.react-europe.org/[ReactEurope] a couple of days earlier - but micro services were mentioned in a few of the talks and it was suggested that GraphQL works well in this world as well.
It was a fun day out so thanks to the folks at https://www.graph.cool/[Graphcool] for organising! | null | null | [
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] | graphql-europe-trip-berlin | https://markhneedham.com/blog/2017/05/27/graphql-europe-trip-berlin |
false | 2017-05-01 19:11:54 | Loading and analysing Strava runs using PostgreSQL JSON data type | [
"python",
"strava",
"postgresql"
] | [
"PostgreSQL"
] | In my last post I showed how to http://www.markhneedham.com/blog/2017/04/29/leaflet-strava-polylines-osm/[map Strava runs] using data that I'd extracted from their +++<cite>+++https://strava.github.io/api/v3/activities/[/activities]+++</cite>+++ API, but the API returns a lot of other data that I discarded because I wasn't sure what I should keep.
The API returns a nested JSON structure so the easiest solution would be to save each run as an individual file but I've always wanted to try out https://www.postgresql.org/docs/9.5/static/datatype-json.html[PostgreSQL's JSON data type] and this seemed like a good opportunity.
== Creating a JSON ready PostgreSQL table
First up we need to create a database in which we'll store our Strava data. Let's name it appropriately:
[source,sql]
----
create database strava;
\connect strava;
----
Now we can now create a table with one field with the JSON data type:
[source,sql]
----
CREATE TABLE runs (
id INTEGER NOT NULL,
data jsonb
);
ALTER TABLE runs ADD PRIMARY KEY(id);
----
Easy enough. Now we're ready to populate the table.
== Importing Strava API
We can partially reuse https://gist.github.com/mneedham/34b923beb7fd72f8fe6ee433c2b27d73#file-extract_runs-py[the script from the last post] except rather than saving to CSV file we'll save to PostgreSQL using the https://pypi.python.org/pypi/psycopg2[psycopg2] library.
image::{{<siteurl>}}/uploads/2017/05/2017-05-01_13-45-58.png[2017 05 01 13 45 58,550]
____
The script relies on a +++<cite>+++TOKEN+++</cite>+++ environment variable. If you want to try this on your own Strava account you'll need to https://www.strava.com/settings/api[create an application], which will give you a key.
____
+++<cite>+++extract-runs.py+++</cite>+++
[source,python]
----
import requests
import os
import json
import psycopg2
token = os.environ["TOKEN"]
headers = {'Authorization': "Bearer {0}".format(token)}
with psycopg2.connect("dbname=strava user=markneedham") as conn:
with conn.cursor() as cur:
page = 1
while True:
r = requests.get("https://www.strava.com/api/v3/athlete/activities?page={0}".format(page), headers = headers)
response = r.json()
if len(response) == 0:
break
else:
for activity in response:
r = requests.get("https://www.strava.com/api/v3/activities/{0}?include_all_efforts=true".format(activity["id"]), headers = headers)
json_response = r.json()
cur.execute("INSERT INTO runs (id, data) VALUES(%s, %s)", (activity["id"], json.dumps(json_response)))
conn.commit()
page += 1
----
== Querying Strava
We can now write some queries against our newly imported data.
== My quickest runs
[source,sql]
----
SELECT id, data->>'start_date' as start_date,
(data->>'average_speed')::float as speed
FROM runs
ORDER BY speed DESC
LIMIT 5
id | start_date | speed
-----------+----------------------+-------
649253963 | 2016-07-22T05:18:37Z | 3.736
914796614 | 2017-03-26T08:37:56Z | 3.614
653703601 | 2016-07-26T05:25:07Z | 3.606
548540883 | 2016-04-17T18:18:05Z | 3.604
665006485 | 2016-08-05T04:11:21Z | 3.604
(5 rows)
----
== My longest runs
[source,sql]
----
SELECT id, data->>'start_date' as start_date,
(data->>'distance')::float as distance
FROM runs
ORDER BY distance DESC
LIMIT 5
id | start_date | distance
-----------+----------------------+----------
840246999 | 2017-01-22T10:20:33Z | 10764.1
461124609 | 2016-01-02T08:42:47Z | 10457.9
467634177 | 2016-01-10T18:48:47Z | 10434.5
471467618 | 2016-01-16T12:33:28Z | 10359.3
540811705 | 2016-04-10T07:26:55Z | 9651.6
(5 rows)
----
== Runs this year
[source,sql]
----
SELECT COUNT(*)
FROM runs
WHERE data->>'start_date' >= '2017-01-01 00:00:00'
count
-------
62
(1 row)
----
== Runs per year
[source,sql]
----
SELECT EXTRACT(year from to_date(data->>'start_date', 'YYYY-mm-dd')) AS year,
count(*)
FROM runs
GROUP BY year
ORDER BY year
year | count
------+-------
2014 | 18
2015 | 139
2016 | 166
2017 | 62
(4 rows)
----
That's all for now. Next I'm going to learn how to query segments, which are stored inside a nested array inside the JSON document. Stay tuned for that in a future post. | null | null | [
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] | loading-and-analysing-strava-runs-using-postgresql-json-data-type | https://markhneedham.com/blog/2017/05/01/loading-and-analysing-strava-runs-using-postgresql-json-data-type |
false | 2017-05-01 20:42:07 | PostgreSQL: ERROR: argument of WHERE must not return a set | [
"postgresql"
] | [
"PostgreSQL"
] | In my last post I showed how to http://www.markhneedham.com/blog/2017/05/01/loading-and-analysing-strava-runs-using-postgresql-json-data-type/[load and query data from the Strava API in PostgreSQL] and after executing some simple queries my next task was to query more complex part of the JSON structure.
image::{{<siteurl>}}/uploads/2017/05/2017-05-01_21-22-55.png[2017 05 01 21 22 55,187]
Strava allows users to create https://support.strava.com/hc/en-us/articles/216918167-What-are-Segments-[segments], which are edited portions of road or trail where athletes can compete for time.
I wanted to write a query to find all the times that I'd run a particular segment. e.g. the https://www.strava.com/segments/6818475[Akerman Road] segment covers a road running North to South in Kennington/Stockwell in South London.
This segment has the id +++<cite>+++'6818475'+++</cite>+++ so we'll need to look inside +++<cite>+++segment_efforts+++</cite>+++ and then compare the value +++<cite>+++segment.id+++</cite>+++ against this id.
I initially wrote this query to try and find the times I'd run this segment:
[source,sql]
----
SELECT id, data->'start_date' AS startDate, data->'average_speed' AS averageSpeed
FROM runs
WHERE jsonb_array_elements(data->'segment_efforts')->'segment'->>'id' = '6818475'
ERROR: argument of WHERE must not return a set
LINE 3: WHERE jsonb_array_elements(data->'segment_efforts')->'segmen...
----
This doesn't work since +++<cite>+++https://www.postgresql.org/docs/9.5/static/functions-json.html#FUNCTIONS-JSON-PROCESSING-TABLE[jsonb_array_elements]+++</cite>+++ returns a set of boolean values, as http://stackoverflow.com/questions/21675174/querying-data-within-json-array-data-field/21677486#21677486[Craig Ringer points out on Stack Overflow].
Instead we can use a https://www.postgresql.org/docs/9.4/static/queries-table-expressions.html#QUERIES-LATERAL[LATERAL subquery] to achieve our goal:
[source,sql]
----
SELECT id, data->'start_date' AS startDate, data->'average_speed' AS averageSpeed
FROM runs r,
LATERAL jsonb_array_elements(r.data->'segment_efforts') segment
WHERE segment ->'segment'->>'id' = '6818475'
id | startdate | averagespeed
-----------+------------------------+--------------
455461182 | "2015-12-24T11:20:26Z" | 2.841
440088621 | "2015-11-27T06:10:42Z" | 2.975
407930503 | "2015-10-07T05:18:34Z" | 2.985
317170464 | "2015-06-03T04:44:59Z" | 2.842
312629236 | "2015-05-27T04:46:33Z" | 2.857
277786711 | "2015-04-02T05:25:59Z" | 2.408
226351235 | "2014-12-05T07:59:15Z" | 2.803
225073326 | "2014-12-01T06:15:21Z" | 2.929
224287690 | "2014-11-29T09:02:46Z" | 3.087
223964715 | "2014-11-28T06:18:29Z" | 2.844
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] | postgresql-error-argument-must-not-return-set | https://markhneedham.com/blog/2017/05/01/postgresql-error-argument-must-not-return-set |
false | 2017-02-28 15:50:27 | Neo4j: Graphing the 'My name is...I work' Twitter meme | [
"twitter",
"neo4j"
] | [
"neo4j"
] | Over the last few days I've been watching the chain of 'My name is\...' tweets kicked off by https://twitter.com/dhh[DHH] with interest. As I understand it, the idea is to show that coding interview riddles/hard tasks on a whiteboard are ridiculous.
[,DHH (@dhh) https://twitter.com/dhh/status/834146806594433025[February 21, 2017]]
____
Hello, my name is David. I would fail to write bubble sort on a whiteboard. I look code up on the internet all the time. I don't do riddles.
____+++<script async="" src="//platform.twitter.com/widgets.js" charset="utf-8">++++++</script>+++
Other people quoted that tweet and added their own piece and yesterday Eduardo Hernacki suggested that traversing this chain of tweets seemed tailor made for Neo4j.
[,Eduardo Hernacki (@eduardohki) https://twitter.com/eduardohki/status/836402386440761347[February 28, 2017]]
____
https://twitter.com/eduardohki[@eduardohki] is someone traversing all this stuff? https://twitter.com/hashtag/Neo4j?src=hash[#Neo4j]
____+++<script async="" src="//platform.twitter.com/widgets.js" charset="utf-8">++++++</script>+++
https://twitter.com/mesirii[Michael] was quickly on the scene and created a Cypher query which calls the Twitter API and creates a Neo4j graph from the resulting JSON response. The only tricky bit is creating a 'bearer token' but Jason Kotchoff has https://gist.github.com/jkotchoff/03add042c9b1b7db350c[a helpful gist] showing how to generate one from your Twitter consumer key and consumer secret.
Now that we're got our bearer token let's create a parameter to store it. Type the following in the Neo4j browser:
[source,cypher]
----
:param bearer: '<your-bearer-token-goes-here>'
----
Now we're ready to query the Twitter API. We'll start with the https://dev.twitter.com/rest/reference/get/search/tweets[search API] and find all tweets which contain the text '"my name" "I work"'. That will return a JSON response containing lots of tweets. We'll then create a node for each tweet it returns, a node for the user who posted the tweet, a node for the tweet it quotes, and relationships to glue them all together.
We're going to use the +++<cite>+++apoc.load.jsonParams+++</cite>+++ procedure from the https://github.com/neo4j-contrib/neo4j-apoc-procedures/releases[APOC library] to help us import the data. If you want to follow along you can use a https://neo4j.com/sandbox-v2/[Neo4j sandbox instance] which comes with APOC installed. For your local Neo4j installation, grab the APOC jar and put it into your +++<cite>+++plugins+++</cite>+++ folder before restarting Neo4j.
This is the query in full:
[source,cypher]
----
WITH 'https://api.twitter.com/1.1/search/tweets.json?count=100&result_type=recent&lang=en&q=' as url, {bearer} as bearer
CALL apoc.load.jsonParams(url + "%22my%20name%22%20is%22%20%22I%20work%22",{Authorization:"Bearer "+bearer},null) yield value
UNWIND value.statuses as status
WITH status, status.user as u, status.entities as e
WHERE status.quoted_status_id is not null
// create a node for the original tweet
MERGE (t:Tweet {id:status.id})
ON CREATE SET t.text=status.text,t.created_at=status.created_at,t.retweet_count=status.retweet_count, t.favorite_count=status.favorite_count
// create a node for the author + a POSTED relationship from the author to the tweet
MERGE (p:User {name:u.screen_name})
MERGE (p)-[:POSTED]->(t)
// create a MENTIONED relationship from the tweet to any users mentioned in the tweet
FOREACH (m IN e.user_mentions | MERGE (mu:User {name:m.screen_name}) MERGE (t)-[:MENTIONED]->(mu))
// create a node for the quoted tweet and create a QUOTED relationship from the original tweet to the quoted one
MERGE (q:Tweet {id:status.quoted_status_id})
MERGE (t)–[:QUOTED]->(q)
// repeat the above steps for the quoted tweet
WITH t as t0, status.quoted_status as status WHERE status is not null
WITH t0, status, status.user as u, status.entities as e
MERGE (t:Tweet {id:status.id})
ON CREATE SET t.text=status.text,t.created_at=status.created_at,t.retweet_count=status.retweet_count, t.favorite_count=status.favorite_count
MERGE (t0)-[:QUOTED]->(t)
MERGE (p:User {name:u.screen_name})
MERGE (p)-[:POSTED]->(t)
FOREACH (m IN e.user_mentions | MERGE (mu:User {name:m.screen_name}) MERGE (t)-[:MENTIONED]->(mu))
MERGE (q:Tweet {id:status.quoted_status_id})
MERGE (t)–[:QUOTED]->(q);
----
The resulting graph looks like this:
[source,cypher]
----
MATCH p=()-[r:QUOTED]->() RETURN p LIMIT 25
----
image::{{<siteurl>}}/uploads/2017/02/graph-21.png[Graph 21,407]
A more interesting query would be to find the path from DHH to Eduardo which we can find with the following query:
[source,cypher]
----
match path = (dhh:Tweet {id: 834146806594433025})<-[:QUOTED*]-(eduardo:Tweet{id: 836400531983724545})
UNWIND NODES(path) AS tweet
MATCH (tweet)<-[:POSTED]->(user)
RETURN tweet, user
----
This query:
* starts from DHH's tweet
* traverses all +++<cite>+++QUOTED+++</cite>+++ relationships until it finds Eduardo's tweet
* collects all those tweets and then finds the author
* returns the tweet and the author
And this is the output:
image::{{<siteurl>}}/uploads/2017/02/graph-22-2.png[Graph 20,700]
I ran a couple of other queries against the Twitter API to hydrate some nodes that we hadn't set all the properties on - you can https://gist.github.com/mneedham/438649fbbac0e4124ae19f12586d529f[see all the queries on this gist].
For the next couple of days I also have a sandbox running https://10-0-1-157-32898.neo4jsandbox.com/browser/. You can login using the credentials +++<cite>+++readonly/twitter+++</cite>+++.
</p>
If you have any questions/suggestions let me know in the comments, https://twitter.com/markhneedham[@markhneedham] on twitter, or email the Neo4j DevRel team - [email protected]. | null | null | [
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] | neo4j-graphing-name-work-twitter-meme | https://markhneedham.com/blog/2017/02/28/neo4j-graphing-name-work-twitter-meme |
false | 2017-02-19 22:39:05 | Neo4j: Analysing a CSV file using LOAD CSV and Cypher | [
"neo4j",
"cypher"
] | [
"neo4j"
] | Last week we ran our https://www.meetup.com/Neo4j-Online-Meetup/events/237366632/[first online meetup for several years] and I wanted to wanted to analyse the stats that YouTube lets you download for an event.
The file I downloaded looked like this:
[source,bash]
----
$ cat ~/Downloads/youtube_stats_pW9boJoUxO0.csv
Video IDs:, pW9boJoUxO0, Start time:, Wed Feb 15 08:57:55 2017, End time:, Wed Feb 15 10:03:10 2017
Playbacks, Peak concurrent viewers, Total view time (hours), Average session length (minutes)
348, 112, 97.125, 16.7456896552,
Country code, AR, AT, BE, BR, BY, CA, CH, CL, CR, CZ, DE, DK, EC, EE, ES, FI, FR, GB, HU, IE, IL, IN, IT, LB, LU, LV, MY, NL, NO, NZ, PK, PL, QA, RO, RS, RU, SE, TR, US, VN, ZA
Playbacks, 2, 2, 1, 14, 1, 10, 2, 1, 1, 1, 27, 1, 1, 1, 3, 1, 25, 54, 1, 4, 6, 8, 1, 1, 1, 1, 1, 23, 1, 1, 1, 1, 1, 1, 2, 6, 22, 1, 114, 1, 1
Peak concurrent viewers, 2, 1, 1, 4, 1, 5, 1, 1, 0, 0, 11, 1, 1, 1, 2, 1, 6, 25, 1, 3, 3, 2, 1, 1, 1, 1, 1, 9, 1, 1, 0, 1, 0, 1, 1, 3, 7, 0, 44, 1, 0
Total view time (hours), 1.075, 0.0166666666667, 0.175, 2.58333333333, 0.00833333333333, 3.01666666667, 0.858333333333, 0.0583333333333, 0.0, 0.0, 8.69166666667, 0.8, 0.0166666666667, 0.0583333333333, 0.966666666667, 0.0166666666667, 4.20833333333, 20.8333333333, 0.00833333333333, 1.39166666667, 1.75, 0.766666666667, 0.00833333333333, 0.15, 0.0333333333333, 1.05833333333, 0.0333333333333, 7.36666666667, 0.0583333333333, 0.916666666667, 0.0, 0.00833333333333, 0.0, 0.00833333333333, 0.4, 1.10833333333, 5.28333333333, 0.0, 32.7333333333, 0.658333333333, 0.0
Average session length (minutes), 32.25, 0.5, 10.5, 11.0714285714, 0.5, 18.1, 25.75, 3.5, 0.0, 0.0, 19.3148148148, 48.0, 1.0, 3.5, 19.3333333333, 1.0, 10.1, 23.1481481481, 0.5, 20.875, 17.5, 5.75, 0.5, 9.0, 2.0, 63.5, 2.0, 19.2173913043, 3.5, 55.0, 0.0, 0.5, 0.0, 0.5, 12.0, 11.0833333333, 14.4090909091, 0.0, 17.2280701754, 39.5, 0.0
----
I want to look at the country specific stats so the first 4 lines aren't interesting to me:
[source,bash]
----
$ tail -n+5 youtube_stats_pW9boJoUxO0.csv > youtube.csv
----
I then put the +++<cite>+++youtube.csv+++</cite>+++ file into the +++<cite>+++import+++</cite>+++ directory of Neo4j and wrote the following query to return a row representing each country and its score for each of the metrics:
[source,cypher]
----
load csv with headers from "file:///youtube.csv" AS row
WITH [key in keys(row) where key <> "Country code"] AS keys, row, row["Country code"] AS heading
UNWIND keys AS key
RETURN key AS country, heading AS key, row[key] AS value
╒═════════╤═══════════╤═══════╕
│"country"│"key" │"value"│
╞═════════╪═══════════╪═══════╡
│" SE" │"Playbacks"│"22" │
├─────────┼───────────┼───────┤
│" GB" │"Playbacks"│"54" │
├─────────┼───────────┼───────┤
│" FR" │"Playbacks"│"25" │
├─────────┼───────────┼───────┤
│" RS" │"Playbacks"│"2" │
├─────────┼───────────┼───────┤
│" LV" │"Playbacks"│"1" │
└─────────┴───────────┴───────┘
----
Now I want to create a node representing each country and create a property for each of the metrics. Since the http://www.markhneedham.com/blog/2016/10/27/neo4j-dynamically-add-property/[property names are going to be dynamic] I'll make use of the https://github.com/neo4j-contrib/neo4j-apoc-procedures/releases[APOC library] which I drop into my +++<cite>+++plugins+++</cite>+++ directory. I then tweaked the query to create the nodes:
[source,cypher]
----
load csv with headers from "https://dl.dropboxusercontent.com/u/14493611/youtube.csv" AS row
WITH [key in keys(row) where key <> "Country code"] AS keys, row, row["Country code"] AS heading
UNWIND keys AS key
WITH key AS country, heading AS key, row[key] AS value
MERGE (c:Country {name: replace(country, " ", "")})
WITH *
CALL apoc.create.setProperty(c, key, toInteger(value))
YIELD node
RETURN COUNT(*)
----
We can now see which country provided the most viewers:
[source,cypher]
----
MATCH (n:Country)
RETURN n.name, n.Playbacks AS playbacks, n.`Total view time (hours)` AS viewTimeInHours, n.`Peak concurrent viewers` AS peakConcViewers, n.`Average session length (minutes)` AS aveSessionMins
ORDER BY playbacks DESC
LIMIT 10
╒════════╤═══════════╤═════════════════╤═════════════════╤════════════════╕
│"n.name"│"playbacks"│"viewTimeInHours"│"peakConcViewers"│"aveSessionMins"│
╞════════╪═══════════╪═════════════════╪═════════════════╪════════════════╡
│"US" │"114" │"32" │"44" │"17" │
├────────┼───────────┼─────────────────┼─────────────────┼────────────────┤
│"GB" │"54" │"20" │"25" │"23" │
├────────┼───────────┼─────────────────┼─────────────────┼────────────────┤
│"DE" │"27" │"8" │"11" │"19" │
├────────┼───────────┼─────────────────┼─────────────────┼────────────────┤
│"FR" │"25" │"4" │"6" │"10" │
├────────┼───────────┼─────────────────┼─────────────────┼────────────────┤
│"NL" │"23" │"7" │"9" │"19" │
├────────┼───────────┼─────────────────┼─────────────────┼────────────────┤
│"SE" │"22" │"5" │"7" │"14" │
├────────┼───────────┼─────────────────┼─────────────────┼────────────────┤
│"BR" │"14" │"2" │"4" │"11" │
├────────┼───────────┼─────────────────┼─────────────────┼────────────────┤
│"CA" │"10" │"3" │"5" │"18" │
├────────┼───────────┼─────────────────┼─────────────────┼────────────────┤
│"IN" │"8" │"0" │"2" │"5" │
├────────┼───────────┼─────────────────┼─────────────────┼────────────────┤
│"IL" │"6" │"1" │"3" │"17" │
└────────┴───────────┴─────────────────┴─────────────────┴────────────────┘
----
The United States in first unsurprisingly followed by the UK, Germany, and France. We ran the meetup at 5pm UK time so it was a friendly enough time for this side of the globe but not so friendly for Asia or Australia so it's not too surprising we don't see anybody from there!
For my last trick I wanted to see the full names of the countries so I downloaded the http://data.okfn.org/data/core/country-list[2 digit codes for each country along with their full name].
I then updated my graph:
[source,cypher]
----
load csv with headers from "file:///countries.csv" AS row
MATCH (c:Country {name: row.Code})
SET c.fullName = row.Name;
----
Now let's re-run our query and show the country fullnames instead:
[source,cypher]
----
MATCH (n:Country)
RETURN n.fullName, n.Playbacks AS playbacks, n.`Total view time (hours)` AS viewTimeInHours, n.`Peak concurrent viewers` AS peakConcViewers, n.`Average session length (minutes)` AS aveSessionMins
ORDER BY playbacks DESC
LIMIT 10
╒════════════════╤═══════════╤═════════════════╤═════════════════╤════════════════╕
│"n.fullName" │"playbacks"│"viewTimeInHours"│"peakConcViewers"│"aveSessionMins"│
╞════════════════╪═══════════╪═════════════════╪═════════════════╪════════════════╡
│"United States" │"114" │"32" │"44" │"17" │
├────────────────┼───────────┼─────────────────┼─────────────────┼────────────────┤
│"United Kingdom"│"54" │"20" │"25" │"23" │
├────────────────┼───────────┼─────────────────┼─────────────────┼────────────────┤
│"Germany" │"27" │"8" │"11" │"19" │
├────────────────┼───────────┼─────────────────┼─────────────────┼────────────────┤
│"France" │"25" │"4" │"6" │"10" │
├────────────────┼───────────┼─────────────────┼─────────────────┼────────────────┤
│"Netherlands" │"23" │"7" │"9" │"19" │
├────────────────┼───────────┼─────────────────┼─────────────────┼────────────────┤
│"Sweden" │"22" │"5" │"7" │"14" │
├────────────────┼───────────┼─────────────────┼─────────────────┼────────────────┤
│"Brazil" │"14" │"2" │"4" │"11" │
├────────────────┼───────────┼─────────────────┼─────────────────┼────────────────┤
│"Canada" │"10" │"3" │"5" │"18" │
├────────────────┼───────────┼─────────────────┼─────────────────┼────────────────┤
│"India" │"8" │"0" │"2" │"5" │
├────────────────┼───────────┼─────────────────┼─────────────────┼────────────────┤
│"Israel" │"6" │"1" │"3" │"17" │
└────────────────┴───────────┴─────────────────┴─────────────────┴────────────────┘
----
And that's the end of my analysis with no relationships in sight! | null | null | [
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] | neo4j-analysing-csv-file-using-load-csv-cypher | https://markhneedham.com/blog/2017/02/19/neo4j-analysing-csv-file-using-load-csv-cypher |
false | 2017-02-12 22:43:53 | ReactJS/Material-UI: Cannot resolve module 'material-ui/lib/' | [
"reactjs"
] | [
"Javascript"
] | I've been playing around with ReactJS and the Material-UI library over the weekend and ran into this error while trying to follow http://www.material-ui.com/v0.15.0-alpha.1/#/components/subheader[one of the example from the demo application]:
[source,text]
----
ERROR in ./src/app/modules/Foo.js
Module not found: Error: Cannot resolve module 'material-ui/lib/Subheader' in /Users/markneedham/neo/reactjs-test/src/app/modules
@ ./src/app/modules/Foo.js 13:17-53
webpack: Failed to compile.
----
This was the component code:
[source,javascript]
----
import React from 'react'
import Subheader from 'material-ui/lib/Subheader'
export default React.createClass({
render() {
return <div>
<Subheader>Some Text</Subheader>
</div>
}
})
----
which is then rendered like this:
[source,javascript]
----
import Foo from './modules/Foo'
render(Foo, document.getElementById("app"))
----
I came across https://github.com/callemall/material-ui/issues/4845[this post on Stack Overflow] which seemed to describe a similar issue and led me to realise that I was actually on the wrong version of the documentation. I'm using version 0.16.7 but the demo I copied from is for version 0.15.0-alpha.1!
This is the component code that we actually want:
[source,javascript]
----
import React from 'react'
import Subheader from 'material-ui/Subheader'
export default React.createClass({
render() {
return <div>
<Subheader>Some Text</Subheader>
</div>
}
})
----
And that's all I had to change. There are several other components that you'll see the same error for and it looks like the change was made between the 0.14.x and 0.15.x series of the library. | null | null | [
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] | reactjsmaterial-ui-cannot-resolve-module-material-uilib | https://markhneedham.com/blog/2017/02/12/reactjsmaterial-ui-cannot-resolve-module-material-uilib |
false | 2017-02-22 23:28:23 | Neo4j: How do null values even work? | [
"neo4j"
] | [
"neo4j"
] | Every now and then I find myself wanting to import a CSV file into https://neo4j.com/developer/[Neo4j] and I always get confused with how to handle the various null values that can lurk within.
Let's start with an example that doesn't have a CSV file in sight. Consider the following list and my attempt to only return null values:
[source,cypher]
----
WITH [null, "null", "", "Mark"] AS values
UNWIND values AS value
WITH value WHERE value = null
RETURN value
(no changes, no records)
----
Hmm that's weird. I'd have expected that at least keep the first value in the collection. What about if we do the inverse?
[source,cypher]
----
WITH [null, "null", "", "Mark"] AS values
UNWIND values AS value
WITH value WHERE value <> null
RETURN value
(no changes, no records)
----
Still nothing! Let's try returning the output of our comparisons rather than filtering rows:
[source,cypher]
----
WITH [null, "null", "", "Mark"] AS values
UNWIND values AS value
RETURN value = null AS outcome
╒═══════╤═════════╕
│"value"│"outcome"│
╞═══════╪═════════╡
│null │null │
├───────┼─────────┤
│"null" │null │
├───────┼─────────┤
│"" │null │
├───────┼─────────┤
│"Mark" │null │
└───────┴─────────┘
----
Ok so that isn't what we expected. Everything has an 'outcome' of 'null'! What about if we want to check whether the value is the string "Mark"?
[source,cypher]
----
WITH [null, "null", "", "Mark"] AS values
UNWIND values AS value
RETURN value = "Mark" AS outcome
╒═══════╤═════════╕
│"value"│"outcome"│
╞═══════╪═════════╡
│null │null │
├───────┼─────────┤
│"null" │false │
├───────┼─────────┤
│"" │false │
├───────┼─────────┤
│"Mark" │true │
└───────┴─────────┘
----
From executing this query we learn that if one side of a comparison is null then the return value is always going to be null.
So how do we exclude a row if it's null?
It turns out we have to use the 'is' keyword rather than using the equality operator. Let's see what that looks like:
[source,cypher]
----
WITH [null, "null", "", "Mark"] AS values
UNWIND values AS value
WITH value WHERE value is null
RETURN value
╒═══════╕
│"value"│
╞═══════╡
│null │
└───────┘
----
And the positive case:
[source,cypher]
----
WITH [null, "null", "", "Mark"] AS values
UNWIND values AS value
WITH value WHERE value is not null
RETURN value
╒═══════╕
│"value"│
╞═══════╡
│"null" │
├───────┤
│"" │
├───────┤
│"Mark" │
└───────┘
----
What if we want to get rid of empty strings?
[source,cypher]
----
WITH [null, "null", "", "Mark"] AS values
UNWIND values AS value
WITH value WHERE value <> ""
RETURN value
╒═══════╕
│"value"│
╞═══════╡
│"null" │
├───────┤
│"Mark" │
└───────┘
----
Interestingly that also gets rid of the null value which I hadn't expected. But if we look for values matching the empty string:
[source,cypher]
----
WITH [null, "null", "", "Mark"] AS values
UNWIND values AS value
WITH value WHERE value = ""
RETURN value
╒═══════╕
│"value"│
╞═══════╡
│"" │
└───────┘
----
It's not there either! Hmm what's going on here:
[source,cypher]
----
WITH [null, "null", "", "Mark"] AS values
UNWIND values AS value
RETURN value, value = "" AS isEmpty, value <> "" AS isNotEmpty
╒═══════╤═════════╤════════════╕
│"value"│"isEmpty"│"isNotEmpty"│
╞═══════╪═════════╪════════════╡
│null │null │null │
├───────┼─────────┼────────────┤
│"null" │false │true │
├───────┼─────────┼────────────┤
│"" │true │false │
├───────┼─────────┼────────────┤
│"Mark" │false │true │
└───────┴─────────┴────────────┘
----
null values seem to get filtered out for every type of equality match unless we explicitly check that a value 'is null'.
So how do we use this knowledge when we're parsing CSV files using Neo4j's https://neo4j.com/developer/guide-import-csv/[LOAD CSV] tool?
Let's say we have a CSV file that looks like this:
[source,bash]
----
$ cat nulls.csv
name,company
"Mark",
"Michael",""
"Will",null
"Ryan","Neo4j"
----
So none of the first three rows have a value for 'company'. I don't have any value at all, Michael has an empty string, and Will has a null value. Let's see how LOAD CSV interprets this:
[source,cypher]
----
load csv with headers from "file:///nulls.csv" AS row
RETURN row
╒═════════════════════════════════╕
│"row" │
╞═════════════════════════════════╡
│{"name":"Mark","company":null} │
├─────────────────────────────────┤
│{"name":"Michael","company":""} │
├─────────────────────────────────┤
│{"name":"Will","company":"null"} │
├─────────────────────────────────┤
│{"name":"Ryan","company":"Neo4j"}│
└─────────────────────────────────┘
----
We've got the full sweep of all the combinations from above. We'd like to create a +++<cite>+++Person+++</cite>+++ node for each row but only create a +++<cite>+++Company+++</cite>+++ node and associated 'WORKS_FOR' relationshp if an actual company is defined - we don't want to create a null company.
So we only want to create a company node and 'WORKS_FOR' relationship for the Ryan row.
The following query does the trick:
[source,cypher]
----
load csv with headers from "file:///nulls.csv" AS row
MERGE (p:Person {name: row.name})
WITH p, row
WHERE row.company <> "" AND row.company <> "null"
MERGE (c:Company {name: row.company})
MERGE (p)-[:WORKS_FOR]->(c)
Added 5 labels, created 5 nodes, set 5 properties, created 1 relationship, statement completed in 117 ms.
----
And if we visualise what's been created:
image::{{<siteurl>}}/uploads/2017/02/graph-15.png[Graph 15,250]
Perfect. Perhaps this behaviour is obvious but it always trips me up so hopefully it'll be useful to someone else as well!
There's also a section on the Neo4j developer pages describing http://neo4j.com/docs/developer-manual/current/cypher/syntax/working-with-null/[even more null scenarios] that's worth checking out. | null | null | [
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] | neo4j-null-values-even-work | https://markhneedham.com/blog/2017/02/22/neo4j-null-values-even-work |
false | 2017-11-18 12:44:37 | Kubernetes: Copy a dataset to a StatefulSet's PersistentVolume | [
"neo4j",
"kubernetes"
] | [
"neo4j",
"Kubernetes"
] | In this post we'll learn how to copy an existing dataset to the https://kubernetes.io/docs/concepts/storage/persistent-volumes/[PersistentVolumes] used by a Neo4j cluster running on https://kubernetes.io/[Kubernetes].
== Neo4j Clusters on Kubernetes
This posts assumes that we're familiar with deploying Neo4j on Kubernetes. I wrote an article on the Neo4j blog https://neo4j.com/blog/kubernetes-deploy-neo4j-clusters/[explaining this in more detail].
The StatefulSet we create for our core servers require https://kubernetes.io/docs/concepts/storage/persistent-volumes/[persistent storage], achieved via the PersistentVolumeClaim (PVC) primitive. A Neo4j cluster containing 3 core servers would have the following PVCs:
[source,bash]
----
$ kubectl get pvc
NAME STATUS VOLUME CAPACITY ACCESS MODES STORAGECLASS AGE
datadir-neo-helm-neo4j-core-0 Bound pvc-043efa91-cc54-11e7-bfa5-080027ab9eac 10Gi RWO standard 45s
datadir-neo-helm-neo4j-core-1 Bound pvc-1737755a-cc54-11e7-bfa5-080027ab9eac 10Gi RWO standard 13s
datadir-neo-helm-neo4j-core-2 Bound pvc-18696bfd-cc54-11e7-bfa5-080027ab9eac 10Gi RWO standard 11s
----
Each of the PVCs has a corresponding PersistentVolume (PV) that satisifies it:
[source,bash]
----
$ kubectl get pv
NAME CAPACITY ACCESS MODES RECLAIM POLICY STATUS CLAIM STORAGECLASS REASON AGE
pvc-043efa91-cc54-11e7-bfa5-080027ab9eac 10Gi RWO Delete Bound default/datadir-neo-helm-neo4j-core-0 standard 41m
pvc-1737755a-cc54-11e7-bfa5-080027ab9eac 10Gi RWO Delete Bound default/datadir-neo-helm-neo4j-core-1 standard 40m
pvc-18696bfd-cc54-11e7-bfa5-080027ab9eac 10Gi RWO Delete Bound default/datadir-neo-helm-neo4j-core-2 standard 40m
----
The PVCs and PVs are usually created at the same time that we deploy our StatefulSet. We need to intervene in that lifecycle so that our dataset is already in place before the StatefulSet is deployed.
== Deploying an existing dataset
We can do this by following these steps:
* Create PVCs with the above names manually
* Attach pods to those PVCs
* Copy our dataset onto those pods
* Delete the pods
* Deploy our Neo4j cluster
We can use the following script to create the PVCs and pods:
+++<cite>+++pvs.sh+++</cite>+++
[source,shell]
----
#!/usr/bin/env bash
set -exuo pipefail
for i in $(seq 0 2); do
cat <<EOF | kubectl apply -f -
kind: PersistentVolumeClaim
apiVersion: v1
metadata:
name: datadir-neo-helm-neo4j-core-${i}
labels:
app: neo4j
spec:
accessModes:
- ReadWriteOnce
resources:
requests:
storage: 10Gi
EOF
cat <<EOF | kubectl apply -f -
kind: Pod
apiVersion: v1
metadata:
name: neo4j-load-data-${i}
labels:
app: neo4j-loader
spec:
volumes:
- name: datadir-neo4j-core-${i}
persistentVolumeClaim:
claimName: datadir-neo-helm-neo4j-core-${i}
containers:
- name: neo4j-load-data-${i}
image: ubuntu
volumeMounts:
- name: datadir-neo4j-core-${i}
mountPath: /data
command: ["/bin/bash", "-ecx", "while :; do printf '.'; sleep 5 ; done"]
EOF
done;
----
Let's run that script to create our PVCs and pods:
[source,bash]
----
$ ./pvs.sh
++ seq 0 2
+ for i in $(seq 0 2)
+ cat
+ kubectl apply -f -
persistentvolumeclaim "datadir-neo-helm-neo4j-core-0" configured
+ cat
+ kubectl apply -f -
pod "neo4j-load-data-0" configured
+ for i in $(seq 0 2)
+ cat
+ kubectl apply -f -
persistentvolumeclaim "datadir-neo-helm-neo4j-core-1" configured
+ cat
+ kubectl apply -f -
pod "neo4j-load-data-1" configured
+ for i in $(seq 0 2)
+ cat
+ kubectl apply -f -
persistentvolumeclaim "datadir-neo-helm-neo4j-core-2" configured
+ cat
+ kubectl apply -f -
pod "neo4j-load-data-2" configured
----
Now we can copy our database onto the pods:
[source,bash]
----
for i in $(seq 0 2); do
kubectl cp graph.db.tar.gz neo4j-load-data-${i}:/data/
kubectl exec neo4j-load-data-${i} -- bash -c "mkdir -p /data/databases && tar -xf /data/graph.db.tar.gz -C /data/databases"
done
----
+++<cite>+++graph.db.tar.gz+++</cite>+++ contains a backup from a local database I created:
[source,bash]
----
$ tar -tvf graph.db.tar.gz
drwxr-xr-x 0 markneedham staff 0 24 Jul 15:23 graph.db/
drwxr-xr-x 0 markneedham staff 0 24 Jul 15:23 graph.db/certificates/
drwxr-xr-x 0 markneedham staff 0 17 Feb 2017 graph.db/index/
drwxr-xr-x 0 markneedham staff 0 24 Jul 15:22 graph.db/logs/
-rw-r--r-- 0 markneedham staff 8192 24 Jul 15:23 graph.db/neostore
-rw-r--r-- 0 markneedham staff 896 24 Jul 15:23 graph.db/neostore.counts.db.a
-rw-r--r-- 0 markneedham staff 1344 24 Jul 15:23 graph.db/neostore.counts.db.b
-rw-r--r-- 0 markneedham staff 9 24 Jul 15:23 graph.db/neostore.id
-rw-r--r-- 0 markneedham staff 65536 24 Jul 15:23 graph.db/neostore.labelscanstore.db
...
-rw------- 0 markneedham staff 1700 24 Jul 15:23 graph.db/certificates/neo4j.key
----
We'll run the following command to check the databases are in place:
[source,bash]
----
$ kubectl exec neo4j-load-data-0 -- ls -lh /data/databases/
total 4.0K
drwxr-xr-x 6 501 staff 4.0K Jul 24 14:23 graph.db
$ kubectl exec neo4j-load-data-1 -- ls -lh /data/databases/
total 4.0K
drwxr-xr-x 6 501 staff 4.0K Jul 24 14:23 graph.db
$ kubectl exec neo4j-load-data-2 -- ls -lh /data/databases/
total 4.0K
drwxr-xr-x 6 501 staff 4.0K Jul 24 14:23 graph.db
----
All good so far. The pods have done their job so we'll tear those down:
[source,bash]
----
$ kubectl delete pods -l app=neo4j-loader
pod "neo4j-load-data-0" deleted
pod "neo4j-load-data-1" deleted
pod "neo4j-load-data-2" deleted
----
We're now ready to deploy our Neo4j cluster.
[source,bash]
----
helm install incubator/neo4j --name neo-helm --wait --set authEnabled=false
----
Finally we'll run a Cypher query to check that the Neo4j servers used the database that we uploaded:
[source,bash]
----
$ kubectl exec neo-helm-neo4j-core-0 -- bin/cypher-shell "match (n) return count(*)"
count(*)
32314
$ kubectl exec neo-helm-neo4j-core-1 -- bin/cypher-shell "match (n) return count(*)"
count(*)
32314
$ kubectl exec neo-helm-neo4j-core-2 -- bin/cypher-shell "match (n) return count(*)"
count(*)
32314
----
Success!
We could achieve similar results by using an https://kubernetes.io/docs/concepts/workloads/pods/init-containers/[init container] but I haven't had a chance to try out that approach yet. If you give it a try let me know in the comments and I'll add it to the post. | In this post we'll learn how to copy an existing dataset to the PersistentVolumes used by a Neo4j cluster running on Kubernetes. | null | [
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] | kubernetes-copy-a-dataset-to-a-statefulsets-persistentvolume | https://markhneedham.com/blog/2017/11/18/kubernetes-copy-a-dataset-to-a-statefulsets-persistentvolume |
false | 2017-11-29 23:01:38 | scikit-learn: Creating a matrix of named entity counts | [
"nlp",
"scikit-learn",
"polyglot",
"ner",
"entity-extraction"
] | [
"Python"
] | I've been trying to improve my score on Kaggle's https://www.kaggle.com/c/spooky-author-identification[Spooky Author Identification] competition, and my latest idea was building a model which used named entities extracted using the https://github.com/aboSamoor/polyglot[polyglot NLP library].
We'll start by learning how to extract entities form a sentence using polyglot which isn't too tricky:
[source,python]
----
>>> from polyglot.text import Text
>>> doc = "My name is David Beckham. Hello from London, England"
>>> Text(doc, hint_language_code="en").entities
[I-PER(['David', 'Beckham']), I-LOC(['London']), I-LOC(['England'])]
----
This sentence contains three entities. We'd like each entity to be a string rather than an array of values so let's refactor the code to do that:
[source,python]
----
>>> ["_".join(entity) for entity in Text(doc, hint_language_code="en").entities]
['David_Beckham', 'London', 'England']
----
That's it for the polyglot part of the solution. Now let's work out how to integrate that with scikit-learn.
I've been using scikit-learn's +++<cite>+++http://scikit-learn.org/stable/modules/generated/sklearn.pipeline.Pipeline.html[Pipeline]+++</cite>+++ abstraction for the other models I've created so I'd like to take the same approach here. This is an example of a model that creates a matrix of unigram counts and creates a Naive Bayes model on top of that:
[source,python]
----
from sklearn.feature_extraction.text import CountVectorizer
from sklearn.naive_bayes import MultinomialNB
from sklearn.pipeline import Pipeline
nlp_pipeline = Pipeline([
('cv', CountVectorizer(),
('mnb', MultinomialNB())
])
...
# Train and Test the model
...
----
I was going to write a class similar to +++<cite>+++http://scikit-learn.org/stable/modules/generated/sklearn.feature_extraction.text.CountVectorizer.html[CountVectorizer]+++</cite>+++ but after reading its code for a couple of hours I realised that I could just pass in a custom analyzer instead. This is what I ended up with:
[source,python]
----
entities = {}
def analyze(doc):
if doc not in entities:
entities[doc] = ["_".join(entity) for entity in Text(doc, hint_language_code="en").entities]
return entities[doc]
nlp_pipeline = Pipeline([
('cv', CountVectorizer(analyzer=lambda doc: analyze(doc))),
('mnb', MultinomialNB())
])
----
I'm caching the results in a dictionary because the entity extraction is quite time consuming and there's no point recalculating it each time the function is called.
Unfortunately this model didn't help me improve my best score. It scores a log loss of around 0.5, a bit worse than the 0.45 I've achieved using the unigram model :( | Learn how to create a matrix of named entities using scikit-learn's CountVectorizer and then train a model on it as part of machine learning pipeline. | null | [
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] | scikit-learn-creating-a-matrix-of-named-entity-counts | https://markhneedham.com/blog/2017/11/29/scikit-learn-creating-a-matrix-of-named-entity-counts |
false | 2017-11-28 19:52:13 | Python: polyglot - ModuleNotFoundError: No module named 'icu' | [
"nlp",
"python",
"polyglot"
] | [
"Python"
] | I wanted to use the https://github.com/aboSamoor/polyglot[polyglot] NLP library that my colleague Will Lyon mentioned in http://www.lyonwj.com/2017/11/15/entity-extraction-russian-troll-tweets-neo4j/[his analysis of Russian Twitter Trolls] but had installation problems which I thought I'd share in case anyone else experiences the same issues.
I started by trying to install +++<cite>+++polyglot+++</cite>+++:
[source,bash]
----
$ pip install polyglot
ImportError: No module named 'icu'
----
Hmmm I'm not sure what +++<cite>+++icu+++</cite>+++ is but luckily there's a https://github.com/aboSamoor/polyglot/issues/10[GitHub issue covering this problem]. That led me to https://tobywf.com/2017/05/installing-pyicu-on-macos/[Toby Fleming's blog post] that suggests the following steps:
[source,bash]
----
brew install icu4c
export ICU_VERSION=58
export PYICU_INCLUDES=/usr/local/Cellar/icu4c/58.2/include
export PYICU_LFLAGS=-L/usr/local/Cellar/icu4c/58.2/lib
pip install pyicu
----
I already had +++<cite>+++icu4c+++</cite>+++ installed so I just had to make sure that I had the same version of that library as Toby did. I ran the following command to check that:
[source,bash]
----
$ ls -lh /usr/local/Cellar/icu4c/
total 0
drwxr-xr-x 12 markneedham admin 408B 28 Nov 06:12 58.2
----
That still wasn't enough though! I had to install these two libraries as well:
[source,bash]
----
pip install pycld2
pip install morfessor
----
I was then able to install polyglot, but had to then run the following commands to download the files needed for entity extraction:
[source,bash]
----
polyglot download embeddings2.de
polyglot download ner2.de
polyglot download embeddings2.en
polyglot download ner2.en
---- | Learn how to get around the ModuleNotFoundError: No module named '`icu`' error when installing Python's polyglot NLP library | null | [
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] | python-polyglot-modulenotfounderror-no-module-named-icu | https://markhneedham.com/blog/2017/11/28/python-polyglot-modulenotfounderror-no-module-named-icu |
false | 2017-11-17 18:10:28 | Kubernetes 1.8: Using Cronjobs to take Neo4j backups | [
"neo4j",
"kubernetes",
"cronjob",
"backup"
] | [
"neo4j",
"Kubernetes"
] | With the http://blog.kubernetes.io/2017/09/kubernetes-18-security-workloads-and.html[release of Kubernetes 1.8] Cronjobs have graduated to beta, which means we can now more easily run Neo4j backup jobs against Kubernetes clusters.
Before we learn how to write a Cronjob let's first create a local Kubernetes cluster and deploy Neo4j.
== Spinup Kubernetes & Helm
[source,bash]
----
minikube start --memory 8192
helm init && kubectl rollout status -w deployment/tiller-deploy --namespace=kube-system
----
== Deploy a Neo4j cluster
[source,bash]
----
helm repo add incubator https://kubernetes-charts-incubator.storage.googleapis.com/
helm install incubator/neo4j --name neo-helm --wait --set authEnabled=false,core.extraVars.NEO4J_dbms_backup_address=0.0.0.0:6362
----
== Populate our cluster with data
We can run the following command to check our cluster is ready:
[source,bash]
----
kubectl exec neo-helm-neo4j-core-0 \
-- bin/cypher-shell --format verbose \
"CALL dbms.cluster.overview() YIELD id, role RETURN id, role"
+-----------------------------------------------------+
| id | role |
+-----------------------------------------------------+
| "0b3bfe6c-6a68-4af5-9dd2-e96b564df6e5" | "LEADER" |
| "09e9bee8-bdc5-4e95-926c-16ea8213e6e7" | "FOLLOWER" |
| "859b9b56-9bfc-42ae-90c3-02cedacfe720" | "FOLLOWER" |
+-----------------------------------------------------+
----
Now let's create some data:
[source,bash]
----
kubectl exec neo-helm-neo4j-core-0 \
-- bin/cypher-shell --format verbose \
"UNWIND range(0,1000) AS id CREATE (:Person {id: id})"
0 rows available after 653 ms, consumed after another 0 ms
Added 1001 nodes, Set 1001 properties, Added 1001 labels
----
Now that our Neo4j cluster is running and contains data we want to take regular backups.
== Neo4j backups
The https://neo4j.com/docs/operations-manual/current/backup/perform-backup/[Neo4j backup tool] supports full and incremental backups.
== Full backup
A full backup streams a copy of the store files to the backup location and any transactions that happened during the backup. Those transactions are then applied to the backed up copy of the database.
== Incremental backup
An incremental backup is triggered if there is already a Neo4j database in the backup location. In this case there will be no copying of store files. Instead the tool will copy any new transactions from Neo4j and apply them to the backup.
== Backup Cronjob
We will use a https://kubernetes.io/docs/concepts/workloads/controllers/cron-jobs/[Cronjob] to execute a backup. In the example below we attach a PersistentVolumeClaim to our Cronjob so that we can see both of the backup scenarios in action.
[source,yaml]
----
kind: PersistentVolumeClaim
apiVersion: v1
metadata:
name: backupdir-neo4j
labels:
app: neo4j-backup
spec:
accessModes:
- ReadWriteOnce
resources:
requests:
storage: 10Gi
---
apiVersion: batch/v1beta1
kind: CronJob
metadata:
name: neo4j-backup
spec:
schedule: "*/1 * * * *"
jobTemplate:
spec:
template:
spec:
volumes:
- name: backupdir-neo4j
persistentVolumeClaim:
claimName: backupdir-neo4j
containers:
- name: neo4j-backup
image: neo4j:3.3.0-enterprise
env:
- name: NEO4J_ACCEPT_LICENSE_AGREEMENT
value: "yes"
volumeMounts:
- name: backupdir-neo4j
mountPath: /tmp
command: ["bin/neo4j-admin", "backup", "--backup-dir", "/tmp", "--name", "backup", "--from", "neo-helm-neo4j-core-2.neo-helm-neo4j.default.svc.cluster.local:6362"]
restartPolicy: OnFailure
----
[source,bash]
----
$ kubectl apply -f cronjob.yaml
cronjob "neo4j-backup" created
----
[source,bash]
----
kubectl get jobs -w
NAME DESIRED SUCCESSFUL AGE
neo4j-backup-1510940940 1 1 34s
----
Now let's view the logs from the job:
[source,bash]
----
kubectl logs $(kubectl get pods -a --selector=job-name=neo4j-backup-1510940940 --output=jsonpath={.items..metadata.name})
Doing full backup...
2017-11-17 17:49:05.920+0000 INFO [o.n.c.s.StoreCopyClient] Copying neostore.nodestore.db.labels
...
2017-11-17 17:49:06.038+0000 INFO [o.n.c.s.StoreCopyClient] Copied neostore.labelscanstore.db 48.00 kB
2017-11-17 17:49:06.038+0000 INFO [o.n.c.s.StoreCopyClient] Done, copied 18 files
2017-11-17 17:49:06.094+0000 INFO [o.n.b.BackupService] Start recovering store
2017-11-17 17:49:07.669+0000 INFO [o.n.b.BackupService] Finish recovering store
Doing consistency check...
2017-11-17 17:49:07.716+0000 INFO [o.n.k.i.s.f.RecordFormatSelector] Selected RecordFormat:StandardV3_2[v0.A.8] record format from store /tmp/backup
2017-11-17 17:49:07.716+0000 INFO [o.n.k.i.s.f.RecordFormatSelector] Format not configured. Selected format from the store: RecordFormat:StandardV3_2[v0.A.8]
2017-11-17 17:49:07.755+0000 INFO [o.n.m.MetricsExtension] Initiating metrics...
.................... 10%
...
.................... 100%
Backup complete.
----
All good so far. Now let's create more data:
[source,bash]
----
kubectl exec neo-helm-neo4j-core-0 \
-- bin/cypher-shell --format verbose \
"UNWIND range(0,1000) AS id CREATE (:Person {id: id})"
0 rows available after 114 ms, consumed after another 0 ms
Added 1001 nodes, Set 1001 properties, Added 1001 labels
----
And wait for another backup job to run:
[source,bash]
----
kubectl get jobs -w
NAME DESIRED SUCCESSFUL AGE
neo4j-backup-1510941180 1 1 2m
neo4j-backup-1510941240 1 1 1m
neo4j-backup-1510941300 1 1 17s
----
[source,bash]
----
kubectl logs $(kubectl get pods -a --selector=job-name=neo4j-backup-1510941300 --output=jsonpath={.items..metadata.name})
Destination is not empty, doing incremental backup...
Doing consistency check...
2017-11-17 17:55:07.958+0000 INFO [o.n.k.i.s.f.RecordFormatSelector] Selected RecordFormat:StandardV3_2[v0.A.8] record format from store /tmp/backup
2017-11-17 17:55:07.959+0000 INFO [o.n.k.i.s.f.RecordFormatSelector] Format not configured. Selected format from the store: RecordFormat:StandardV3_2[v0.A.8]
2017-11-17 17:55:07.995+0000 INFO [o.n.m.MetricsExtension] Initiating metrics...
.................... 10%
...
.................... 100%
Backup complete.
----
If we were to extend this job further we could have it copy each backup it takes to an S3 bucket but I'll leave that for another day. | Learn how to take backups of Neo4j clusters deployed on Kubernetes using the Cronjob feature released in Kubernetes 1.8. | null | [
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] | kubernetes-1-8-using-cronjobs-take-neo4j-backups | https://markhneedham.com/blog/2017/11/17/kubernetes-1-8-using-cronjobs-take-neo4j-backups |
false | 2017-11-19 07:16:56 | Python 3: TypeError: unsupported format string passed to numpy.ndarray.*format* | [
"python",
"python3"
] | [
"Python"
] | This post explains how to work around a change in how Python string formatting works for numpy arrays between Python 2 and Python 3.
I've been going through https://twitter.com/justmarkham[Kevin Markham]'s scikit-learn Jupyter notebooks and ran into a problem on the https://github.com/justmarkham/scikit-learn-videos/blob/master/07_cross_validation.ipynb[Cross Validation] one, which was throwing this error when attempting to print the KFold example:
[source,python]
----
Iteration Training set observations Testing set observations
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
<ipython-input-28-007cbab507e3> in <module>()
6 print('{} {:^61} {}'.format('Iteration', 'Training set observations', 'Testing set observations'))
7 for iteration, data in enumerate(kf, start=1):
----> 8 print('{0:^9} {1} {2:^25}'.format(iteration, data[0], data[1]))
TypeError: unsupported format string passed to numpy.ndarray.__format__
----
We can reproduce this easily:
[source,python]
----
>>> import numpy as np
----
[source,python]
----
>>> "{:9}".format(np.array([1,2,3]))
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
TypeError: unsupported format string passed to numpy.ndarray.__format__
----
What about if we use Python 2?
[source,python]
----
>>> "{:9}".format(np.array([1,2,3]))
'[1 2 3] '
----
Hmmm, must be a change between the Python versions.
We can work around it by coercing our numpy array to a string:
[source,python]
----
>>> "{:9}".format(str(np.array([1,2,3])))
'[1 2 3] '
---- | This post explains how to work around a change in how Python string formatting works for numpy arrays between Python 2 and Python 3. | null | [
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] | python-3-typeerror-unsupported-format-string-passed-to-numpy-ndarray-__format__ | https://markhneedham.com/blog/2017/11/19/python-3-typeerror-unsupported-format-string-passed-to-numpy-ndarray-__format__ |
false | 2017-11-06 16:17:35 | Neo4j Browser: Expected entity id to be an integral value | [
"javascript",
"neo4j",
"neo4j-browser"
] | [
"neo4j"
] | I came across an interesting error while writing a Cypher query that used parameters in the Neo4j browser which I thought I should document for future me.
We'll start with a graph that has 1,000 people:
[source,cypher]
----
unwind range(0,1000) AS id
create (:Person {id: id})
----
Now we'll try and retrieve some of those people via a parameter lookup:
[source,cypher]
----
:param ids: [0]
----
[source,cypher]
----
match (p:Person) where p.id in {ids}
return p
╒════════╕
│"p" │
╞════════╡
│{"id":0}│
└────────┘
----
All good so far. Now what about if we try and look them up by their internal node id instead:
[source,cypher]
----
match (p:Person) where id(p) in {ids}
return p
Neo.ClientError.Statement.TypeError
Expected entity id to be an integral value
----
Hmm, that was unexpected. It turns out that to get this query to work we need to cast each of the integer values in the +++<cite>+++\{ids}+++</cite>+++ array to a 64 bit integer using the +++<cite>+++https://neo4j.com/docs/developer-manual/current/cypher/functions/scalar/#functions-tointeger[toInteger]+++</cite>+++ function:
[source,cypher]
----
match (p:Person) where id(p) in [id in {ids} | toInteger(id)]
return p
╒════════╕
│"p" │
╞════════╡
│{"id":0}│
└────────┘
----
Success! | Learn how to handle the 'Expected entity id to be an integral value' error that you get if you pass in 32 bit integer values as params to a query. | null | [
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] | neo4j-browser-expected-entity-id-integral-value | https://markhneedham.com/blog/2017/11/06/neo4j-browser-expected-entity-id-integral-value |
false | 2017-10-21 10:06:55 | Kubernetes: Simple example of pod running | [
"bash",
"kubernetes"
] | [
"Kubernetes"
] | I recently needed to create a Kubernetes pod that would 'just sit there' while I used +++<cite>+++kube cp+++</cite>+++ to copy some files to a persistent volume to which it was bound.
I started out with this naive pod spec:
+++<cite>+++pod_no_while.yaml+++</cite>+++
[source,yaml]
----
kind: Pod
apiVersion: v1
metadata:
name: marks-dummy-pod
spec:
containers:
- name: marks-dummy-pod
image: ubuntu
restartPolicy: Never
----
Let's apply that template:
[source,bash]
----
$ kubectl apply -f pod_no_while.yaml
pod "marks-dummy-pod" created
----
And let's check if we have any running pods:
[source,bash]
----
$ kubectl get pods
No resources found, use --show-all to see completed objects.
----
We won't see anything here because unsurprisingly the pod has run to completion as there's nothing to keep it running! We can confirm that by running this command:
[source,bash]
----
$ kubectl get pods --show-all
NAME READY STATUS RESTARTS AGE
marks-dummy-pod 0/1 Completed 0 1m
----
Now let's create a pod that has an infinite bash while loop:
+++<cite>+++pod.yaml+++</cite>+++
[source,yaml]
----
kind: Pod
apiVersion: v1
metadata:
name: marks-dummy-pod
spec:
containers:
- name: marks-dummy-pod
image: ubuntu
command: ["/bin/bash", "-ec", "while :; do echo '.'; sleep 5 ; done"]
restartPolicy: Never
----
Let's apply that one instead:
[source,bash]
----
$ kubectl apply -f pod.yaml
The Pod "marks-dummy-pod" is invalid: spec: Forbidden: pod updates may not change fields other than `spec.containers[*].image`, `spec.initContainers[*].image`, `spec.activeDeadlineSeconds` or `spec.tolerations` (only additions to existing tolerations)
----
Oops, we need to delete it first so let's do that:
[source,bash]
----
$ kubectl delete pod marks-dummy-pod
pod "marks-dummy-pod" deleted
----
Attempt #2:
[source,bash]
----
$ kubectl apply -f pod.yaml
pod "marks-dummy-pod" created
----
And let's checkup on our pod:
[source,bash]
----
$ kubectl get pods
NAME READY STATUS RESTARTS AGE
marks-dummy-pod 1/1 Running 0 14s
----
Looks better already. Let's check the logs
[source,bash]
----
$ kubectl logs marks-dummy-pod
.
.
----
Great! We can now +++<cite>+++kubectl cp+++</cite>+++ to our heart's content and then delete the pod aftewards. | null | null | [
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] | kubernetes-simple-example-pod-running | https://markhneedham.com/blog/2017/10/21/kubernetes-simple-example-pod-running |
false | 2017-10-31 21:43:17 | Neo4j: Traversal query timeout | [
"neo4j",
"traversal-api"
] | [
"neo4j"
] | I've been spending some of my spare time over the last few weeks creating an application that generates running routes from https://www.ordnancesurvey.co.uk/business-and-government/products/os-open-roads.html[Open Roads] data - transformed and imported into Neo4j of course!
I've created a user defined procedure which combines several shortest path queries, but I wanted to exit any of these shortest path searches if they were taking too long. My code without a timeout looks like this:
[source,java]
----
StandardExpander orderedExpander = new OrderedByTypeExpander()
.add( RelationshipType.withName( "CONNECTS" ), Direction.BOTH );
PathFinder<Path> shortestPathFinder = GraphAlgoFactory.shortestPath( expander, 250 );
...
----
There are several places where we could check the time elapsed, but the +++<cite>+++expand+++</cite>+++ method in the +++<cite>+++Expander+++</cite>+++ seemed like an obvious one to me. I wrote my own +++<cite>+++Expander+++</cite>+++ class which looks like this:
[source,java]
----
public class TimeConstrainedExpander implements PathExpander
{
private final StandardExpander expander;
private final long startTime;
private final Clock clock;
private int pathsExpanded = 0;
private long timeLimitInMillis;
public TimeConstrainedExpander( StandardExpander expander, Clock clock, long timeLimitInMillis )
{
this.expander = expander;
this.clock = clock;
this.startTime = clock.instant().toEpochMilli();
this.timeLimitInMillis = timeLimitInMillis;
}
@Override
public Iterable<Relationship> expand( Path path, BranchState state )
{
long timeSoFar = clock.instant().toEpochMilli() - startTime;
if ( timeSoFar > timeLimitInMillis )
{
return Collections.emptyList();
}
return expander.expand( path, state );
}
@Override
public PathExpander reverse()
{
return expander.reverse();
}
}
----
The code snippet from earlier now needs to be updated to use our new class, which isn't too tricky:
[source,java]
----
StandardExpander orderedExpander = new OrderedByTypeExpander()
.add( RelationshipType.withName( "CONNECTS" ), Direction.BOTH );
TimeConstrainedExpander expander = new TimeConstrainedExpander(orderedExpander,
Clock.systemUTC(), 200);
PathFinder<Path> shortestPathFinder = GraphAlgoFactory.shortestPath( expander, 250 );
...
----
I'm not sure if this is the best way to achieve what I want but after failing with several other approaches at least this one actually works! | Learn how to set a timeout in a Neo4j user defined procedure that uses the traversal API. | null | [
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] | neo4j-traversal-query-timeout | https://markhneedham.com/blog/2017/10/31/neo4j-traversal-query-timeout |
false | 2017-10-06 16:13:33 | Neo4j: Cypher - Deleting duplicate nodes | [
"neo4j",
"cypher"
] | [
"neo4j"
] | I had a problem on a graph I was working on recently where I'd managed to create duplicate nodes because I hadn't applied any http://neo4j.com/docs/developer-manual/current/cypher/schema/constraints/[unique constraints].
I wanted to remove the duplicates, and came across https://gist.github.com/jruts/fe782ff2531d509784a24b655ad8ae76[Jimmy Ruts' excellent post] which shows some ways to do this.
Let's first create a graph with some duplicate nodes to play with:
[source,cypher]
----
UNWIND range(0, 100) AS id
CREATE (p1:Person {id: toInteger(rand() * id)})
MERGE (p2:Person {id: toInteger(rand() * id)})
MERGE (p3:Person {id: toInteger(rand() * id)})
MERGE (p4:Person {id: toInteger(rand() * id)})
CREATE (p1)-[:KNOWS]->(p2)
CREATE (p1)-[:KNOWS]->(p3)
CREATE (p1)-[:KNOWS]->(p4)
Added 173 labels, created 173 nodes, set 173 properties, created 5829 relationships, completed after 408 ms.
----
How do we find the duplicate nodes?
[source,cypher]
----
MATCH (p:Person)
WITH p.id as id, collect(p) AS nodes
WHERE size(nodes) > 1
RETURN [ n in nodes | n.id] AS ids, size(nodes)
ORDER BY size(nodes) DESC
LIMIT 10
╒══════════════════════╤═════════════╕
│"ids" │"size(nodes)"│
╞══════════════════════╪═════════════╡
│[1,1,1,1,1,1,1,1] │8 │
├──────────────────────┼─────────────┤
│[0,0,0,0,0,0,0,0] │8 │
├──────────────────────┼─────────────┤
│[17,17,17,17,17,17,17]│7 │
├──────────────────────┼─────────────┤
│[4,4,4,4,4,4,4] │7 │
├──────────────────────┼─────────────┤
│[2,2,2,2,2,2] │6 │
├──────────────────────┼─────────────┤
│[5,5,5,5,5,5] │6 │
├──────────────────────┼─────────────┤
│[19,19,19,19,19,19] │6 │
├──────────────────────┼─────────────┤
│[11,11,11,11,11] │5 │
├──────────────────────┼─────────────┤
│[25,25,25,25,25] │5 │
├──────────────────────┼─────────────┤
│[43,43,43,43,43] │5 │
└──────────────────────┴─────────────┘
----
Let's zoom in on all the people with 'id:1' and work out how many relationships they have. Our plan is keep the node that has the most connections and get rid of the others.
[source,cypher]
----
MATCH (p:Person)
WITH p.id as id, collect(p) AS nodes
WHERE size(nodes) > 1
WITH nodes ORDER BY size(nodes) DESC
LIMIT 1
UNWIND nodes AS n
RETURN n.id, id(n) AS internalId, size((n)--()) AS rels
ORDER BY rels DESC
╒══════╤════════════╤══════╕
│"n.id"│"internalId"│"rels"│
╞══════╪════════════╪══════╡
│1 │175 │1284 │
├──────┼────────────┼──────┤
│1 │184 │721 │
├──────┼────────────┼──────┤
│1 │180 │580 │
├──────┼────────────┼──────┤
│1 │2 │391 │
├──────┼────────────┼──────┤
│1 │195 │361 │
├──────┼────────────┼──────┤
│1 │199 │352 │
├──────┼────────────┼──────┤
│1 │302 │5 │
├──────┼────────────┼──────┤
│1 │306 │1 │
└──────┴────────────┴──────┘
----
So in this example we want to keep the node that has 210 relationships and delete the rest.
To make things easy we need the node with the highest cardinality to be first or last in our list. We can ensure that's the case by ordering the nodes before we group them.
[source,cypher]
----
MATCH (p:Person)
WITH p
ORDER BY p.id, size((p)--()) DESC
WITH p.id as id, collect(p) AS nodes
WHERE size(nodes) > 1
RETURN [ n in nodes | {id: n.id,rels: size((n)--()) } ] AS ids, size(nodes)
ORDER BY size(nodes) DESC
LIMIT 10
╒══════════════════════════════════════════════════════════════════════╤═════════════╕
│"ids" │"size(nodes)"│
╞══════════════════════════════════════════════════════════════════════╪═════════════╡
│[{"id":1,"rels":1284},{"id":1,"rels":721},{"id":1,"rels":580},{"id":1,│8 │
│"rels":391},{"id":1,"rels":361},{"id":1,"rels":352},{"id":1,"rels":5},│ │
│{"id":1,"rels":1}] │ │
├──────────────────────────────────────────────────────────────────────┼─────────────┤
│[{"id":0,"rels":2064},{"id":0,"rels":2059},{"id":0,"rels":1297},{"id":│8 │
│0,"rels":1124},{"id":0,"rels":995},{"id":0,"rels":928},{"id":0,"rels":│ │
│730},{"id":0,"rels":702}] │ │
├──────────────────────────────────────────────────────────────────────┼─────────────┤
│[{"id":17,"rels":153},{"id":17,"rels":105},{"id":17,"rels":81},{"id":1│7 │
│7,"rels":31},{"id":17,"rels":15},{"id":17,"rels":14},{"id":17,"rels":1│ │
│}] │ │
├──────────────────────────────────────────────────────────────────────┼─────────────┤
│[{"id":4,"rels":394},{"id":4,"rels":320},{"id":4,"rels":250},{"id":4,"│7 │
│rels":201},{"id":4,"rels":162},{"id":4,"rels":162},{"id":4,"rels":14}]│ │
├──────────────────────────────────────────────────────────────────────┼─────────────┤
│[{"id":2,"rels":514},{"id":2,"rels":329},{"id":2,"rels":318},{"id":2,"│6 │
│rels":241},{"id":2,"rels":240},{"id":2,"rels":2}] │ │
├──────────────────────────────────────────────────────────────────────┼─────────────┤
│[{"id":5,"rels":487},{"id":5,"rels":378},{"id":5,"rels":242},{"id":5,"│6 │
│rels":181},{"id":5,"rels":158},{"id":5,"rels":8}] │ │
├──────────────────────────────────────────────────────────────────────┼─────────────┤
│[{"id":19,"rels":153},{"id":19,"rels":120},{"id":19,"rels":84},{"id":1│6 │
│9,"rels":53},{"id":19,"rels":45},{"id":19,"rels":1}] │ │
├──────────────────────────────────────────────────────────────────────┼─────────────┤
│[{"id":11,"rels":222},{"id":11,"rels":192},{"id":11,"rels":172},{"id":│5 │
│11,"rels":152},{"id":11,"rels":89}] │ │
├──────────────────────────────────────────────────────────────────────┼─────────────┤
│[{"id":25,"rels":133},{"id":25,"rels":107},{"id":25,"rels":98},{"id":2│5 │
│5,"rels":15},{"id":25,"rels":2}] │ │
├──────────────────────────────────────────────────────────────────────┼─────────────┤
│[{"id":43,"rels":92},{"id":43,"rels":85},{"id":43,"rels":9},{"id":43,"│5 │
│rels":5},{"id":43,"rels":1}] │ │
└──────────────────────────────────────────────────────────────────────┴─────────────┘───────────────────────────────────────────────────────┴─────────────┘
----
Now it's time to delete the duplicates:
[source,cypher]
----
MATCH (p:Person)
WITH p
ORDER BY p.id, size((p)--()) DESC
WITH p.id as id, collect(p) AS nodes
WHERE size(nodes) > 1
UNWIND nodes[1..] AS n
DETACH DELETE n
Deleted 143 nodes, deleted 13806 relationships, completed after 29 ms.
----
Now if we run our duplicate query:
[source,cypher]
----
MATCH (p:Person)
WITH p.id as id, collect(p) AS nodes
WHERE size(nodes) > 1
RETURN [ n in nodes | n.id] AS ids, size(nodes)
ORDER BY size(nodes) DESC
LIMIT 10
(no changes, no records)
----
What about if we remove the WHERE clause?
[source,cypher]
----
MATCH (p:Person)
WITH p.id as id, collect(p) AS nodes
RETURN [ n in nodes | n.id] AS ids, size(nodes)
ORDER BY size(nodes) DESC
LIMIT 10
╒═════╤═════════════╕
│"ids"│"size(nodes)"│
╞═════╪═════════════╡
│[23] │1 │
├─────┼─────────────┤
│[86] │1 │
├─────┼─────────────┤
│[77] │1 │
├─────┼─────────────┤
│[59] │1 │
├─────┼─────────────┤
│[50] │1 │
├─────┼─────────────┤
│[32] │1 │
├─────┼─────────────┤
│[41] │1 │
├─────┼─────────────┤
│[53] │1 │
├─────┼─────────────┤
│[44] │1 │
├─────┼─────────────┤
│[8] │1 │
└─────┴─────────────┘
----
Hoorah, no more duplicates! Finally, let's check that we kept the node we expected to keep. We expect it to have an 'internalId' of 175:
[source,cypher]
----
MATCH (p:Person {id: 1})
RETURN size((p)--()), id(p) AS internalId
╒═══════════════╤════════════╕
│"size((p)--())"│"internalId"│
╞═══════════════╪════════════╡
│242 │175 │
└───────────────┴────────────┘
----
Which it does! There are many fewer relationships than we had before because a lot of those relationships were to duplicate nodes that we've now deleted.
If we want to go a step further we could 'merge' the duplicate node's relationships onto the nodes that we did keep, but that's for another post! | Sometimes we might accidentally create duplicate nodes in our Neo4j graph database. In this post I show how to remove them with a simple Cypher query. | null | [
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] | neo4j-cypher-deleting-duplicate-nodes | https://markhneedham.com/blog/2017/10/06/neo4j-cypher-deleting-duplicate-nodes |
false | 2017-07-05 14:31:04 | Pandas: Find rows where column/field is null | [
"python",
"pandas",
"data-science"
] | [
"Python"
] | In my continued playing around with the https://www.kaggle.com/c/house-prices-advanced-regression-techniques[Kaggle house prices dataset] I wanted to find any columns/fields that have null values in.
If we want to get a count of the number of null fields by column we can use the following code, adapted from https://www.kaggle.io/svf/1188722/9f7f512433ad6a3bff46445a847dfc15/%5F%5Fresults%5F%5F.html#Missing-Value-Imputation[Poonam Ligade's kernel]:
== Prerequisites
[source,python]
----
import pandas as pd
----
== Count the null columns
[source,python]
----
train = pd.read_csv("train.csv")
null_columns=train.columns[train.isnull().any()]
train[null_columns].isnull().sum()
----
[source,text]
----
LotFrontage 259
Alley 1369
MasVnrType 8
MasVnrArea 8
BsmtQual 37
BsmtCond 37
BsmtExposure 38
BsmtFinType1 37
BsmtFinType2 38
Electrical 1
FireplaceQu 690
GarageType 81
GarageYrBlt 81
GarageFinish 81
GarageQual 81
GarageCond 81
PoolQC 1453
Fence 1179
MiscFeature 1406
dtype: int64
----
So there are lots of different columns containing null values. What if we want to find the solitary row which has 'Electrical' as null?
== Single column is null
[source,python]
----
print(train[train["Electrical"].isnull()][null_columns])
----
[source,text]
----
LotFrontage Alley MasVnrType MasVnrArea BsmtQual BsmtCond BsmtExposure \
1379 73.0 NaN None 0.0 Gd TA No
BsmtFinType1 BsmtFinType2 Electrical FireplaceQu GarageType GarageYrBlt \
1379 Unf Unf NaN NaN BuiltIn 2007.0
GarageFinish GarageQual GarageCond PoolQC Fence MiscFeature
1379 Fin TA TA NaN NaN NaN
----
And what if we want to return https://stackoverflow.com/questions/14247586/python-pandas-how-to-select-rows-with-one-or-more-nulls-from-a-dataframe-without[every row that contains at least one null value]? That's not too difficult - it's just a combination of the code in the previous two sections:
== All null columns
[source,python]
----
print(train[train.isnull().any(axis=1)][null_columns].head())
----
[source,text]
----
LotFrontage Alley MasVnrType MasVnrArea BsmtQual BsmtCond BsmtExposure \
0 65.0 NaN BrkFace 196.0 Gd TA No
1 80.0 NaN None 0.0 Gd TA Gd
2 68.0 NaN BrkFace 162.0 Gd TA Mn
3 60.0 NaN None 0.0 TA Gd No
4 84.0 NaN BrkFace 350.0 Gd TA Av
BsmtFinType1 BsmtFinType2 Electrical FireplaceQu GarageType GarageYrBlt \
0 GLQ Unf SBrkr NaN Attchd 2003.0
1 ALQ Unf SBrkr TA Attchd 1976.0
2 GLQ Unf SBrkr TA Attchd 2001.0
3 ALQ Unf SBrkr Gd Detchd 1998.0
4 GLQ Unf SBrkr TA Attchd 2000.0
GarageFinish GarageQual GarageCond PoolQC Fence MiscFeature
0 RFn TA TA NaN NaN NaN
1 RFn TA TA NaN NaN NaN
2 RFn TA TA NaN NaN NaN
3 Unf TA TA NaN NaN NaN
4 RFn TA TA NaN NaN NaN
----
Hope that helps future Mark! | In this post we look at how to find null values in a Pandas dataframe. | null | [
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] | pandas-find-rows-where-columnfield-is-null | https://markhneedham.com/blog/2017/07/05/pandas-find-rows-where-columnfield-is-null |
false | 2017-07-05 15:42:08 | Pandas/scikit-learn: get_dummies test/train sets - ValueError: shapes not aligned | [
"python",
"pandas"
] | [
"Python"
] | I've been using panda's +++<cite>+++https://pandas.pydata.org/pandas-docs/stable/generated/pandas.get_dummies.html[get_dummies]+++</cite>+++ function to generate dummy columns for categorical variables to use with scikit-learn, but noticed that it sometimes doesn't work as I expect.
== Prerequisites
[source,python]
----
import pandas as pd
import numpy as np
from sklearn import linear_model
----
Let's say we have the following training and test sets:
== Training set
[source,python]
----
train = pd.DataFrame({"letter":["A", "B", "C", "D"], "value": [1, 2, 3, 4]})
X_train = train.drop(["value"], axis=1)
X_train = pd.get_dummies(X_train)
y_train = train["value"]~~~
<h3>Test set</h3>
~~~python
test = pd.DataFrame({"letter":["D", "D", "B", "E"], "value": [4, 5, 7, 19]})
X_test = test.drop(["value"], axis=1)
X_test = pd.get_dummies(X_test)
y_test = test["value"]
----
Now say we want to train a linear model on our training set and then use it to predict the values in our test set:
== Train the model
[source,python]
----
lr = linear_model.LinearRegression()
model = lr.fit(X_train, y_train)
----
== Test the model
[source,python]
----
model.score(X_test, y_test)
----
[source,text]
----
ValueError: shapes (4,3) and (4,) not aligned: 3 (dim 1) != 4 (dim 0)
----
Hmmm that didn't go to plan. If we print +++<cite>+++X_train+++</cite>+++ and +++<cite>+++X_test+++</cite>+++ it might help shed some light:
== Checking the train/test datasets
[source,python]
----
print(X_train)
----
[source,text]
----
letter_A letter_B letter_C letter_D
0 1 0 0 0
1 0 1 0 0
2 0 0 1 0
3 0 0 0 1
----
[source,python]
----
print(X_test)
----
[source,text]
----
letter_B letter_D letter_E
0 0 1 0
1 0 1 0
2 1 0 0
3 0 0 1
----
They do indeed have different shapes and some different column names because the test set contained some values that weren't present in the training set.
We can fix this by https://github.com/pandas-dev/pandas/issues/8918#issuecomment-145490689[making the 'letter' field categorical] before we run the +++<cite>+++get_dummies+++</cite>+++ method over the dataframe. At the moment the field is of type 'object':
== Column types
[source,python]
----
print(train.info)
----
[source,text]
----
<class 'pandas.core.frame.DataFrame'>
RangeIndex: 4 entries, 0 to 3
Data columns (total 2 columns):
letter 4 non-null object
value 4 non-null int64
dtypes: int64(1), object(1)
memory usage: 144.0+ bytes
----
We can fix this by converting the 'letter' field to the type 'category' and setting the list of allowed values to be the unique set of values in the train/test sets.
== All allowed values
[source,python]
----
all_data = pd.concat((train,test))
for column in all_data.select_dtypes(include=[np.object]).columns:
print(column, all_data[column].unique())
----
[source,text]
----
letter ['A' 'B' 'C' 'D' 'E']
----
Now let's update the type of our 'letter' field in the train and test dataframes.
== Type: 'category'
[source,python]
----
all_data = pd.concat((train,test))
for column in all_data.select_dtypes(include=[np.object]).columns:
train[column] = train[column].astype('category', categories = all_data[column].unique())
test[column] = test[column].astype('category', categories = all_data[column].unique())
----
And now if we call +++<cite>+++get_dummies+++</cite>+++ on either dataframe we'll get the same set of columns:
== get_dummies: Take 2
[source,python]
----
X_train = train.drop(["value"], axis=1)
X_train = pd.get_dummies(X_train)
print(X_train)
----
[source,text]
----
letter_A letter_B letter_C letter_D letter_E
0 1 0 0 0 0
1 0 1 0 0 0
2 0 0 1 0 0
3 0 0 0 1 0
----
[source,python]
----
X_test = test.drop(["value"], axis=1)
X_test = pd.get_dummies(X_test)
print(X_train)
----
[source,text]
----
letter_A letter_B letter_C letter_D letter_E
0 0 0 0 1 0
1 0 0 0 1 0
2 0 1 0 0 0
3 0 0 0 0 1
----
Great! Now we should be able to train our model and use it against the test set:
== Train the model: Take 2
[source,python]
----
lr = linear_model.LinearRegression()
model = lr.fit(X_train, y_train)
----
== Test the model: Take 2
[source,python]
----
model.score(X_test, y_test)
----
[source,text]
----
-1.0604490500863557
----
And we're done! | How do I use panda's get_dummies function to generate matching dummy columns across training and test datasets so that scikit-learn models can be trained? | null | [
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] | pandasscikit-learn-get_dummies-testtrain-sets-valueerror-shapes-not-aligned | https://markhneedham.com/blog/2017/07/05/pandasscikit-learn-get_dummies-testtrain-sets-valueerror-shapes-not-aligned |
false | 2017-07-26 21:41:55 | Pandas: ValueError: The truth value of a Series is ambiguous. | [
"python",
"pandas",
"data-science"
] | [
"Data Science"
] | I've been playing around with Kaggle in my spare time over the last few weeks and came across an unexpected behaviour when trying to add a column to a dataframe.
First let's get Panda's into our program scope:
== Prerequisites
[source,python]
----
import pandas as pd
----
Now we'll create a data frame to play with for the duration of this post:
[source,python]
----
>>> df = pd.DataFrame({"a": [1,2,3,4,5], "b": [2,3,4,5,6]})
>>> df
a b
0 5 2
1 6 6
2 0 8
3 3 2
4 1 6
----
Let's say we want to create a new column which returns True if either of the numbers are odd. If not then it'll return False.
We'd expect to see a column full of True values so let's get started.
[source,python]
----
>>> divmod(df["a"], 2)[1] > 0
0 True
1 False
2 True
3 False
4 True
Name: a, dtype: bool
>>> divmod(df["b"], 2)[1] > 0
0 False
1 True
2 False
3 True
4 False
Name: b, dtype: bool
----
So far so good. Now let's combine those two calculations together and create a new column in our data frame:
[source,python]
----
>>> df["anyOdd"] = (divmod(df["a"], 2)[1] > 0) or (divmod(df["b"], 2)[1] > 0)
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/Users/markneedham/projects/kaggle/house-prices/a/lib/python3.6/site-packages/pandas/core/generic.py", line 953, in __nonzero__
.format(self.__class__.__name__))
ValueError: The truth value of a Series is ambiguous. Use a.empty, a.bool(), a.item(), a.any() or a.all().
----
Hmmm, that was unexpected! Unfortunately Python's +++<cite>+++or+++</cite>+++ and +++<cite>+++and+++</cite>+++ statements https://stackoverflow.com/questions/36921951/truth-value-of-a-series-is-ambiguous-use-a-empty-a-bool-a-item-a-any-o[don't work very well against Panda's Series'], so instead we need to use the bitwise or (|) and and (&).
Let's update our example:
[source,python]
----
>>> df["anyOdd"] = (divmod(df["a"], 2)[1] > 0) | (divmod(df["b"], 2)[1] > 0)
>>> df
a b anyOdd
0 1 2 True
1 2 3 True
2 3 4 True
3 4 5 True
4 5 6 True
----
Much better. And what about if we wanted to check if both values are odd?
[source,python]
----
>>> df["bothOdd"] = (divmod(df["a"], 2)[1] > 0) & (divmod(df["b"], 2)[1] > 0)
>>> df
a b anyOdd bothOdd
0 1 2 True False
1 2 3 True False
2 3 4 True False
3 4 5 True False
4 5 6 True False
----
Works exactly as expected, hoorah! | In this post we look at how to work around the ValueError: The truth value of a Series is ambiguous when adding a new column to a DataFrame. | null | [
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] | pandas-valueerror-the-truth-value-of-a-series-is-ambiguous | https://markhneedham.com/blog/2017/07/26/pandas-valueerror-the-truth-value-of-a-series-is-ambiguous |
false | 2017-07-26 22:20:23 | Docker: Building custom Neo4j images on Mac OS X | [
"neo4j",
"docker"
] | [
"neo4j"
] | I sometimes needs to create custom Neo4j Docker images to try things out and wanted to share my work flow, mostly for future Mark but also in case it's useful to someone else.
There's already a docker-neo4j repository so we'll just tweak the files in there to achieve what we want.
[source,bash]
----
$ git clone [email protected]:neo4j/docker-neo4j.git
$ cd docker-neo4j
----
If we want to build a Docker image for Neo4j Enterprise Edition we can run the following build target:
[source,bash]
----
$ make clean build-enterprise
Makefile:9: *** This Make does not support .RECIPEPREFIX. Please use GNU Make 4.0 or later. Stop.
----
Denied at the first hurdle! What version of make have we got on this machine?
[source,bash]
----
$ make --version
GNU Make 3.81
Copyright (C) 2006 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.
There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR PURPOSE.
This program built for i386-apple-darwin11.3.0
----
We can sort that out by https://stackoverflow.com/questions/40871732/using-gnu-make-4-x-on-osx[installing a newer version using brew]:
[source,bash]
----
$ brew install make
$ gmake --version
GNU Make 4.2.1
Built for x86_64-apple-darwin15.6.0
Copyright (C) 1988-2016 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
----
That's more like it! brew installs make with the 'g' prefix and since I'm not sure if anything else on my system relies on the older version of make I won't bother changing the symlink.
Let's retry our original command:
[source,bash]
----
$ gmake clean build-enterprise
Makefile:14: *** NEO4J_VERSION is not set. Stop.
----
It's still not happy with us! Let's set that environment variable to the latest released version as of writing:
[source,bash]
----
$ export NEO4J_VERSION="3.2.2"
$ gmake clean build-enterprise
...
Successfully built c16b6f2738de
Successfully tagged test/18334:latest
Neo4j 3.2.2-enterprise available as: test/18334
----
We can see that image in Docker land by running the following command:
[source,bash]
----
$ docker images | head -n2
REPOSITORY TAG IMAGE ID CREATED SIZE
test/18334 latest c16b6f2738de 4 minutes ago 303MB
----
If I wanted to deploy that image to my own Docker Hub I could run the following commands:
[source,bash]
----
$ docker login --username=markhneedham
$ docker tag c16b6f2738de markhneedham/neo4j:3.2.2
$ docker push markhneedham/neo4j
----
Putting Neo4j Enterprise 3.2.2 on my Docker Hub isn't very interesting though - that version is already on the official Neo4j Docker Hub.
I've actually been building versions of Neo4j against the HEAD of the Neo4j 3.2 branch (i.e. 3.2.3-SNAPSHOT), deploying those to S3, and then building a Docker image based on those archives.
To change the destination of the Neo4j artifact we need to tweak https://github.com/neo4j/docker-neo4j/blob/master/Makefile#L18[this line in the Makefile]:
[source,bash]
----
$ git diff Makefile
diff --git a/Makefile b/Makefile
index c77ed1f..98e05ca 100644
--- a/Makefile
+++ b/Makefile
@@ -15,7 +15,7 @@ ifndef NEO4J_VERSION
endif
tarball = neo4j-$(1)-$(2)-unix.tar.gz
-dist_site := http://dist.neo4j.org
+dist_site := https://s3-eu-west-1.amazonaws.com/core-edge.neotechnology.com/20170726
series := $(shell echo "$(NEO4J_VERSION)" | sed -E 's/^([0-9]+\.[0-9]+)\..*/\1/')
all: out/enterprise/.sentinel out/community/.sentinel
----
We can then update the Neo4j version environment variable:
[source,bash]
----
$ export NEO4J_VERSION="3.2.3-SNAPSHOT"
----
And then repeat the Docker commands above. You'll need to sub in your own Docker Hub user and repository names.
I'm using these custom images as part of Kubernetes deployments but you can use them anywhere that accepts a Docker container.
If anything on the post didn't make sense or you want more clarification let me know https://twitter.com/markhneedham[@markhneedham]. | In this post we look at how to build a custom Neo4j Docker image on Mac OS X. | null | [
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] | docker-building-custom-neo4j-images-on-mac-os-x | https://markhneedham.com/blog/2017/07/26/docker-building-custom-neo4j-images-on-mac-os-x |
false | 2017-09-29 06:09:58 | Serverless: S3 - S3BucketPermissions - Action does not apply to any resource(s) in statement | [
"aws",
"s3",
"serverless"
] | [
"Software Development"
] | I've been playing around with S3 buckets with https://serverless.com/[Serverless], and recently wrote the following code to create an S3 bucket and put a file into that bucket:
[source,javascript]
----
const AWS = require("aws-sdk");
let regionParams = { 'region': 'us-east-1' }
let s3 = new AWS.S3(regionParams);
let s3BucketName = "marks-blog-bucket";
console.log("Creating bucket: " + s3BucketName);
let bucketParams = { Bucket: s3BucketName, ACL: "public-read" };
s3.createBucket(bucketParams).promise()
.then(console.log)
.catch(console.error);
var putObjectParams = {
Body: "<html><body><h1>Hello blog!</h1></body></html>",
Bucket: s3BucketName,
Key: "blog.html"
};
s3.putObject(putObjectParams).promise()
.then(console.log)
.catch(console.error);
----
When I tried to cURL the file I got a permission denied exception:
[source,bash]
----
$ curl --head --silent https://s3.amazonaws.com/marks-blog-bucket/blog.html
HTTP/1.1 403 Forbidden
x-amz-request-id: 512FE36798C0BE4D
x-amz-id-2: O1ELGMJ0jjs11WCrNiVNF2z2ssRgtO4+M4H2QQB5025HjIpC54VId0eKZryYeBYN8Pvb8GsolTQ=
Content-Type: application/xml
Transfer-Encoding: chunked
Date: Fri, 29 Sep 2017 05:42:03 GMT
Server: AmazonS3
----
I wrote the following code to try and have Serverless create a bucket policy that would make all files in my bucket publicly accessible:
+++<cite>+++serverless.yml+++</cite>+++
[source,yaml]
----
service: marks-blog
frameworkVersion: ">=1.2.0 <2.0.0"
provider:
name: aws
runtime: python3.6
timeout: 180
resources:
Resources:
S3BucketPermissions:
Type: AWS::S3::BucketPolicy
Properties:
Bucket: marks-blog-bucket
PolicyDocument:
Statement:
- Principal: "*"
Action:
- s3:GetObject
Effect: Allow
Sid: "AddPerm"
Resource: arn:aws:s3:::marks-blog-bucket
...
----
Let's try to deploy it:
[source,bash]
----
./node_modules/serverless/bin/serverless deploy
Serverless: Packaging service...
Serverless: Excluding development dependencies...
Serverless: Uploading CloudFormation file to S3...
Serverless: Uploading artifacts...
Serverless: Uploading service .zip file to S3 (1.3 KB)...
Serverless: Validating template...
Serverless: Updating Stack...
Serverless: Checking Stack update progress...
........
Serverless: Operation failed!
Serverless Error ---------------------------------------
An error occurred: S3BucketPermissions - Action does not apply to any resource(s) in statement.
----
D'oh! That didn't do what I expected.
I learnt that https://stackoverflow.com/questions/44228422/s3-bucket-action-doesnt-apply-to-any-resources[this message means]:
____
Some services do not let you specify actions for individual resources; instead, any actions that you list in the Action or NotAction element apply to all resources in that service. In these cases, you use the wildcard * in the Resource element.
____
To fix it we need to use the wildcard * to indicate that the s3:GetObject permission should apply to all values in the bucket rather than to the bucket itself.
Take 2!
+++<cite>+++serverless.yml+++</cite>+++
[source,yaml]
----
service: marks-blog
frameworkVersion: ">=1.2.0 <2.0.0"
provider:
name: aws
runtime: python3.6
timeout: 180
resources:
Resources:
S3BucketPermissions:
Type: AWS::S3::BucketPolicy
Properties:
Bucket: marks-blog-bucket
PolicyDocument:
Statement:
- Principal: "*"
Action:
- s3:GetObject
Effect: Allow
Sid: "AddPerm"
Resource: arn:aws:s3:::marks-blog-bucket/*
...
----
Let's deploy again and try to access the file:
[source,bash]
----
$ curl --head --silent https://s3.amazonaws.com/marks-blog-bucket/blog.html
HTTP/1.1 200 OK
x-amz-id-2: uGwsLLoFHf+slXADGYkqW0bLfQ7EPG/kqzV3l2k7SMex4NlMEpNsNN/cIC9INLPohDtVFwUAa90=
x-amz-request-id: 7869E21760CD50F1
Date: Fri, 29 Sep 2017 06:05:11 GMT
Last-Modified: Fri, 29 Sep 2017 06:01:33 GMT
ETag: "57bac87219812c2f9a581943da34cfde"
Accept-Ranges: bytes
Content-Type: application/octet-stream
Content-Length: 46
Server: AmazonS3
----
Success! And if we check in the AWS console we can see that the bucket policy has been applied to our bucket:
image::{{<siteurl>}}/uploads/2017/09/2017-09-29_07-06-13.png[2017 09 29 07 06 13,285] | Learn what the "S3BucketPermissions - Action does not apply to any resource(s) in statement" error message means & how to apply permissions on S3. | null | [
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] | serverless-s3-s3bucketpermissions-action-does-not-apply-to-any-resources-in-statement | https://markhneedham.com/blog/2017/09/29/serverless-s3-s3bucketpermissions-action-does-not-apply-to-any-resources-in-statement |
false | 2017-09-19 19:30:09 | Neo4j: Cypher - Create Cypher map with dynamic keys | [
"neo4j",
"cypher",
"apoc"
] | [
"neo4j"
] | I was recently trying to create a map in a Cypher query but wanted to have dynamic keys in that map. I started off with this query:
[source,cypher]
----
WITH "a" as dynamicKey, "b" as dynamicValue
RETURN { dynamicKey: dynamicValue } AS map
╒══════════════════╕
│"map" │
╞══════════════════╡
│{"dynamicKey":"b"}│
└──────────────────┘
----
Not quite what we want! We want +++<cite>+++dynamicKey+++</cite>+++ to be evaluated rather than treated as a literal. As usual, https://github.com/neo4j-contrib/neo4j-apoc-procedures[APOC] comes to the rescue!
In fact APOC has several functions that will help us out here. Let's take a look at them:
[source,cypher]
----
CALL dbms.functions() yield name, description
WHERE name STARTS WITH "apoc.map.from"
RETURN name, description
╒═════════════════════╤═════════════════════════════════════════════════════╕
│"name" │"description" │
╞═════════════════════╪═════════════════════════════════════════════════════╡
│"apoc.map.fromLists" │"apoc.map.fromLists([keys],[values])" │
├─────────────────────┼─────────────────────────────────────────────────────┤
│"apoc.map.fromNodes" │"apoc.map.fromNodes(label, property)" │
├─────────────────────┼─────────────────────────────────────────────────────┤
│"apoc.map.fromPairs" │"apoc.map.fromPairs([[key,value],[key2,value2],...])"│
├─────────────────────┼─────────────────────────────────────────────────────┤
│"apoc.map.fromValues"│"apoc.map.fromValues([key1,value1,key2,value2,...])" │
└─────────────────────┴─────────────────────────────────────────────────────┘
----
So we can generate a map like this:
[source,cypher]
----
WITH "a" as dynamicKey, "b" as dynamicValue
RETURN apoc.map.fromValues([dynamicKey, dynamicValue]) AS map
╒═════════╕
│"map" │
╞═════════╡
│{"a":"b"}│
└─────────┘
----
or like this:
[source,cypher]
----
WITH "a" as dynamicKey, "b" as dynamicValue
RETURN apoc.map.fromLists([dynamicKey], [dynamicValue]) AS map
╒═════════╕
│"map" │
╞═════════╡
│{"a":"b"}│
└─────────┘
----
or even like this:
[source,cypher]
----
WITH "a" as dynamicKey, "b" as dynamicValue
RETURN apoc.map.fromPairs([[dynamicKey, dynamicValue]]) AS map
╒═════════╕
│"map" │
╞═════════╡
│{"a":"b"}│
└─────────┘
---- | Learn how to create maps with dynamic keys using Neo4j's Cypher query language and the APOC procedure library. | null | [
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] | neo4j-cypher-create-cypher-map-with-dynamic-keys | https://markhneedham.com/blog/2017/09/19/neo4j-cypher-create-cypher-map-with-dynamic-keys |
false | 2017-09-30 21:23:11 | AWS: Spinning up a Neo4j instance with APOC installed | [
"neo4j",
"aws",
"apoc",
"ami"
] | [
"neo4j"
] | One of the first things I do after installing Neo4j is install the https://github.com/neo4j-contrib/neo4j-apoc-procedures/releases[APOC library], but I find it's a bit of a manual process when spinning up a server on AWS so I wanted to simplify it a bit.
There's already https://neo4j.com/developer/neo4j-cloud-aws-ec2-ami/[a Neo4j AMI which installs Neo4j 3.2.0] and my colleague https://twitter.com/mesirii[Michael] pointed out that we could download APOC into the correct folder by writing a script and sending it as http://docs.aws.amazon.com/AWSEC2/latest/UserGuide/ec2-instance-metadata.html#instancedata-add-user-data[UserData].
I've been doing some work in JavaScript over the last two weeks so I thought I'd automate all the steps using the AWS library. You can https://gist.github.com/mneedham/0246221849ccf3646727d6b80977d85f[find the full script on GitHub].
The UserData part of the script is actually very simple:
This script creates a key pair, security group, opens up that security group on ports 22 (SSH), 7474 (HTTP), 7473 (HTTPS), and 7687 (Bolt). The server created is +++<cite>+++m3.medium+++</cite>+++, but you can https://gist.github.com/mneedham/0246221849ccf3646727d6b80977d85f#file-neo4j-with-apoc-js-L38[change that] to https://aws.amazon.com/ec2/pricing/on-demand/[something else] if you prefer.
[source,bash]
----
#!/bin/bash
curl -L https://github.com/neo4j-contrib/neo4j-apoc-procedures/releases/download/3.2.0.3/apoc-3.2.0.3-all.jar -O
sudo cp apoc-3.2.0.3-all.jar /var/lib/neo4j/plugins/
----
We can run it like this:
[source,bash]
----
$ node neo4j-with-apoc.js
Creating a Neo4j server
Key pair created. Save this to a file - you'll need to use it if you want to ssh into the Neo4j server
-----BEGIN RSA PRIVATE KEY-----
<Private key details>
-----END RSA PRIVATE KEY-----
Created Group Id:<Group Id>
Opened Neo4j ports
Instance Id: <Instance Id>
Your Neo4j server is now ready!
You'll need to login to the server and change the default password:
https://ec2-ip-address.compute-1.amazonaws.com:7473 or http://ec2-ip-address.compute-1.amazonaws.com:7474
User:neo4j, Password:<Instance Id>
----
We'll need to wait a few seconds for Neo4j to spin up, but it'll be accessible at the URI specified.
Once it's accessible we can login with the username +++<cite>+++neo4j+++</cite>+++ and password +++<cite>++++++<AWS Instance="" Id="">+++</cite>. We'll then be instructed to choose a new password. </p>
We can then run the following query to check that APOC has been installed: ~~~cypher call dbms.procedures() YIELD name WHERE name starts with "apoc" RETURN count(*) ╒══════════╕ │"count(*)"│ ╞══════════╡ │214 │ └──────────┘ ~~~
Cool, it worked and we can now Neo4j and APOC to our heart's content! If we want to SSH into the server we can do that as well by first saving the private key printed on the command line to a file and then executing the following command: ~~~bash $ cat aws-private-key.pem -----BEGIN RSA PRIVATE KEY----- +++<Private key="" details="">+++-----END RSA PRIVATE KEY----- $ chmod 600 aws-private-key.pem $ ssh -i aws-private-key.pem [email protected] Welcome to Ubuntu 16.04.2 LTS (GNU/Linux 4.4.0-1013-aws x86_64) * Documentation: https://help.ubuntu.com * Management: https://landscape.canonical.com * Support: https://ubuntu.com/advantage Get cloud support with Ubuntu Advantage Cloud Guest: http://www.ubuntu.com/business/services/cloud 106 packages can be updated. 1 update is a security update. To run a command as administrator (user "root"), use "sudo +++<command>++++++</command>+++". See "man sudo_root" for details. ~~~
You can start/stop neo4j by running the following command: ~~~bash $ /etc/init.d/neo4j Usage: /etc/init.d/neo4j {start|stop|status|restart|force-reload} ~~~
The other commands you may be used to finding in the +++<cite>+++bin+++</cite>+++ folder can be found here: ~~~bash $ ls -lh /usr/share/neo4j/bin/ total 48K -rwxr-xr-x 1 neo4j adm 15K May 9 09:22 neo4j -rwxr-xr-x 1 neo4j adm 5.6K May 9 09:22 neo4j-admin -rwxr-xr-x 1 root root 612 May 12 00:03 neo4j-awspasswd -rwxr-xr-x 1 neo4j adm 5.6K May 9 09:22 neo4j-import -rwxr-xr-x 1 neo4j adm 5.6K May 9 09:22 neo4j-shell drwxr-xr-x 2 neo4j adm 4.0K May 11 22:13 tools ~~~
Let me know if this is helpful and if you have any suggestions/improvements.+++</Private>++++++</AWS>++++++</cite>+++ | Learn how to spin up an ES2 instance on AWS with Neo4j and the Awesome Procedures on Cypher (APOC) library installed by default. | null | [
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] | aws-spinning-up-a-neo4j-instance-with-apoc-installed | https://markhneedham.com/blog/2017/09/30/aws-spinning-up-a-neo4j-instance-with-apoc-installed |
false | 2017-09-30 07:51:29 | Serverless: Building a mini producer/consumer data pipeline with AWS SNS | [
"aws",
"serverless",
"sns",
"ec2",
"data-pipeline"
] | [
"Software Development"
] | I wanted to create a little data pipeline with https://serverless.com/[Serverless] whose main use would be to run once a day, call an API, and load that data into a database.
It's mostly used to pull in recent data from that API, but I also wanted to be able to invoke it manually and specify a date range.
I created the following pair of lambdas that https://forum.serverless.com/t/solved-publishing-to-created-sns-topic/1426[communicate with each other via an SNS topic].
== The code
+++<cite>+++serverless.yml+++</cite>+++
[source,yaml]
----
service: marks-blog
frameworkVersion: ">=1.2.0 <2.0.0"
provider:
name: aws
runtime: python3.6
timeout: 180
iamRoleStatements:
- Effect: 'Allow'
Action:
- "sns:Publish"
Resource:
- ${self:custom.BlogTopic}
custom:
BlogTopic:
Fn::Join:
- ":"
- - arn
- aws
- sns
- Ref: AWS::Region
- Ref: AWS::AccountId
- marks-blog-topic
functions:
message-consumer:
name: MessageConsumer
handler: handler.consumer
events:
- sns:
topicName: marks-blog-topic
displayName: Topic to process events
message-producer:
name: MessageProducer
handler: handler.producer
events:
- schedule: rate(1 day)
----
+++<cite>+++handler.py+++</cite>+++
[source,python]
----
import boto3
import json
import datetime
from datetime import timezone
def producer(event, context):
sns = boto3.client('sns')
context_parts = context.invoked_function_arn.split(':')
topic_name = "marks-blog-topic"
topic_arn = "arn:aws:sns:{region}:{account_id}:{topic}".format(
region=context_parts[3], account_id=context_parts[4], topic=topic_name)
now = datetime.datetime.now(timezone.utc)
start_date = (now - datetime.timedelta(days=1)).strftime("%Y-%m-%d")
end_date = now.strftime("%Y-%m-%d")
params = {"startDate": start_date, "endDate": end_date, "tags": ["neo4j"]}
sns.publish(TopicArn= topic_arn, Message= json.dumps(params))
def consumer(event, context):
for record in event["Records"]:
message = json.loads(record["Sns"]["Message"])
start_date = message["startDate"]
end_date = message["endDate"]
tags = message["tags"]
print("start_date: " + start_date)
print("end_date: " + end_date)
print("tags: " + str(tags))
----
== Trying it out
We can simulate a message being received locally by executing the following command:
[source,bash]
----
$ serverless invoke local \
--function message-consumer \
--data '{"Records":[{"Sns": {"Message":"{\"tags\": [\"neo4j\"], \"startDate\": \"2017-09-25\", \"endDate\": \"2017-09-29\" }"}}]}'
start_date: 2017-09-25
end_date: 2017-09-29
tags: ['neo4j']
null
----
That seems to work fine. What about if we invoke the message-producer on AWS?
[source,bash]
----
$ serverless invoke --function message-producer
null
----
Did the consumer received the message?
[source,bash]
----
$ serverless logs --function message-consumer
START RequestId: 0ef5be87-a5b1-11e7-a905-f1387e68c65f Version: $LATEST
start_date: 2017-09-29
end_date: 2017-09-30
tags: ['neo4j']
END RequestId: 0ef5be87-a5b1-11e7-a905-f1387e68c65f
REPORT RequestId: 0ef5be87-a5b1-11e7-a905-f1387e68c65f Duration: 0.46 ms Billed Duration: 100 ms Memory Size: 1024 MB Max Memory Used: 32 MB
----
Looks like it! We can also invoke the consumer directly on AWS:
[source,bash]
----
$ serverless invoke \
--function message-consumer \
--data '{"Records":[{"Sns": {"Message":"{\"tags\": [\"neo4j\"], \"startDate\": \"2017-09-25\", \"endDate\": \"2017-09-26\" }"}}]}'
null
----
And now if we check the consumer's logs we'll see both messages:
[source,bash]
----
$ serverless logs --function message-consumer
START RequestId: 0ef5be87-a5b1-11e7-a905-f1387e68c65f Version: $LATEST
start_date: 2017-09-29
end_date: 2017-09-30
tags: ['neo4j']
END RequestId: 0ef5be87-a5b1-11e7-a905-f1387e68c65f
REPORT RequestId: 0ef5be87-a5b1-11e7-a905-f1387e68c65f Duration: 0.46 ms Billed Duration: 100 ms Memory Size: 1024 MB Max Memory Used: 32 MB
START RequestId: 4cb42bc9-a5b1-11e7-affb-99fa6b4dc3ed Version: $LATEST
start_date: 2017-09-25
end_date: 2017-09-26
tags: ['neo4j']
END RequestId: 4cb42bc9-a5b1-11e7-affb-99fa6b4dc3ed
REPORT RequestId: 4cb42bc9-a5b1-11e7-affb-99fa6b4dc3ed Duration: 16.46 ms Billed Duration: 100 ms Memory Size: 1024 MB Max Memory Used: 32 MB
----
Success! | null | null | [
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] | serverless-building-mini-producerconsumer-data-pipeline-aws-sns | https://markhneedham.com/blog/2017/09/30/serverless-building-mini-producerconsumer-data-pipeline-aws-sns |
false | 2017-09-23 06:51:56 | Python 3: Create sparklines using matplotlib | [
"python",
"sparklines",
"python3",
"edward-tufte",
"matplotlib"
] | [
"Python"
] | I recently wanted to create https://www.edwardtufte.com/bboard/q-and-a-fetch-msg?msg_id=0001OR[sparklines] to show how some values were changing over time. In addition, I wanted to generate them as images on the server rather than introducing a JavaScript library.
Chris Seymour's https://github.com/iiSeymour/sparkline-nb/blob/master/sparkline-nb.ipynb[excellent gist] which shows how to create sparklines inside a Pandas dataframe got me most of the way there, but I had to tweak his code a bit to get it to play nicely with Python 3.6.
This is what I ended up with:
[source,python]
----
import matplotlib
matplotlib.use("Agg")
import matplotlib.pyplot as plt
import base64
from io import BytesIO
def sparkline(data, figsize=(4, 0.25), **kwags):
"""
Returns a HTML image tag containing a base64 encoded sparkline style plot
"""
data = list(data)
fig, ax = plt.subplots(1, 1, figsize=figsize, **kwags)
ax.plot(data)
for k,v in ax.spines.items():
v.set_visible(False)
ax.set_xticks([])
ax.set_yticks([])
plt.plot(len(data) - 1, data[len(data) - 1], 'r.')
ax.fill_between(range(len(data)), data, len(data)*[min(data)], alpha=0.1)
img = BytesIO()
plt.savefig(img, transparent=True, bbox_inches='tight')
img.seek(0)
plt.close()
return base64.b64encode(img.read()).decode("UTF-8")
----
I had to change the class used to write the image from StringIO to BytesIO and I found I needed to decode the bytes produced if I wanted it to display in a HTML page.
This is how you would call the above function:
[source,python]
----
if __name__ == "__main__":
values = [
[1,2,3,4,5,6,7,8,9,10],
[7,10,12,18,2,8,10,6,7,12],
[10,9,8,7,6,5,4,3,2,1]
]
with open("/tmp/foo.html", "w") as file:
for value in values:
file.write('<div><img src="data:image/png;base64,{}"/></div>'.format(sparkline(value)))
----
And the HTML page looks like this:
image::{{<siteurl>}}/uploads/2017/09/2017-09-23_07-49-32.png[2017 09 23 07 49 32,160] | Learn how to create Edward Tufte style sparklines graphics using Python's matplotlib libary. | null | [
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] | python-3-create-sparklines-using-matplotlib | https://markhneedham.com/blog/2017/09/23/python-3-create-sparklines-using-matplotlib |
false | 2017-08-03 17:24:16 | AWS Lambda: /lib/ld-linux.so.2: bad ELF interpreter: No such file or directory' | [
"aws",
"aws-lambda"
] | [
"Software Development"
] | I've been working on an AWS lambda job to convert a HTML page to PDF using a Python wrapper around the wkhtmltopdf library but ended up with the following error when I tried to execute it:
[source,text]
----
b'/bin/sh: ./binary/wkhtmltopdf: /lib/ld-linux.so.2: bad ELF interpreter: No such file or directory\n': Exception
Traceback (most recent call last):
File "/var/task/handler.py", line 33, in generate_certificate
wkhtmltopdf(local_html_file_name, local_pdf_file_name)
File "/var/task/lib/wkhtmltopdf.py", line 64, in wkhtmltopdf
wkhp.render()
File "/var/task/lib/wkhtmltopdf.py", line 56, in render
raise Exception(stderr)
Exception: b'/bin/sh: ./binary/wkhtmltopdf: /lib/ld-linux.so.2: bad ELF interpreter: No such file or directory\n'
----
It turns out this is the error you get if https://stackoverflow.com/questions/8328250/centos-64-bit-bad-elf-interpreter[you run a 32 bit binary on a 64 bit operating system] which is http://docs.aws.amazon.com/lambda/latest/dg/current-supported-versions.html[what AWS uses].
____
If you are using any native binaries in your code, make sure they are compiled in this environment. Note that only 64-bit binaries are supported on AWS Lambda.
____
I changed to the 64 bit binary and am now happily converting HTML pages to PDF. | null | null | [
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] | aws-lambda-libld-linux-2-bad-elf-interpreter-no-file-directory | https://markhneedham.com/blog/2017/08/03/aws-lambda-libld-linux-2-bad-elf-interpreter-no-file-directory |
false | 2017-08-02 06:09:10 | PHP vs Python: Generating a HMAC | [
"python",
"php"
] | [
"Python"
] | I've been writing a bit of code to integrate with a ClassMarker webhook, and you're required to check that an incoming request actually came from ClassMarker by https://www.classmarker.com/online-testing/api/webhooks/#verify[checking the value of a base64 hash using HMAC SHA256].
The example in the documentation is written in PHP which I haven't done for about 10 years so I had to figure out how to do the same thing in Python.
This is the PHP version:
[source,bash]
----
$ php -a
php > echo base64_encode(hash_hmac("sha256", "my data", "my_secret", true));
vyniKpNSlxu4AfTgSJImt+j+pRx7v6m+YBobfKsoGhE=
----
The Python equivalent is a https://stackoverflow.com/a/1306575[bit more code] but it's not too bad.
== Import all the libraries
[source,python]
----
import hmac
import hashlib
import base64
----
== Generate that hash
[source,bash]
----
data = "my data".encode("utf-8")
digest = hmac.new(b"my_secret", data, digestmod=hashlib.sha256).digest()
print(base64.b64encode(digest).decode())
'vyniKpNSlxu4AfTgSJImt+j+pRx7v6m+YBobfKsoGhE='
----
We're getting the same value as the PHP version so it's good times all round. | In this post I show how to generate a Base 64 encoded HMAC using Python and compare it to the same code in PHP. | null | [
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] | php-vs-python-generating-a-hmac | https://markhneedham.com/blog/2017/08/02/php-vs-python-generating-a-hmac |
false | 2017-08-11 16:01:50 | Serverless: AWS HTTP Gateway - 502 Bad Gateway | [
"aws-lambda",
"serverless",
"http-gateway"
] | [
"Software Development"
] | In my continued work with Serverless and AWS Lambda I ran into a problem when trying to call a https://serverless.com/framework/docs/providers/aws/events/apigateway/[HTTP gateway].
My project looked like this:
_serverless.yaml_
[source,text]
----
service: http-gateway
frameworkVersion: ">=1.2.0 <2.0.0"
provider:
name: aws
runtime: python3.6
timeout: 180
functions:
no-op:
name: NoOp
handler: handler.noop
events:
- http: POST noOp
----
_handler.py_
[source,python]
----
def noop(event, context):
return "hello"
----
Let's deploy to AWS:
[source,bash]
----
$ serverless deploy
Serverless: Packaging service...
Serverless: Excluding development dependencies...
Serverless: Uploading CloudFormation file to S3...
Serverless: Uploading artifacts...
Serverless: Uploading service .zip file to S3 (179 B)...
Serverless: Validating template...
Serverless: Updating Stack...
Serverless: Checking Stack update progress...
..............
Serverless: Stack update finished...
Service Information
service: http-gateway
stage: dev
region: us-east-1
api keys:
None
endpoints:
POST - https://29nb5rmmd0.execute-api.us-east-1.amazonaws.com/dev/noOp
functions:
no-op: http-gateway-dev-no-op
----
And now we'll try and call it using cURL:
[source,bash]
----
$ curl -X POST https://29nb5rmmd0.execute-api.us-east-1.amazonaws.com/dev/noOp
{"message": "Internal server error"}
----
That didn't work so well, what do the logs have to say?
[source,bash]
----
$ serverless logs --function no-op
START RequestId: 64ab69b0-7d8f-11e7-9db5-13b228cd4cb6 Version: $LATEST
END RequestId: 64ab69b0-7d8f-11e7-9db5-13b228cd4cb6
REPORT RequestId: 64ab69b0-7d8f-11e7-9db5-13b228cd4cb6 Duration: 0.27 ms Billed Duration: 100 ms Memory Size: 1024 MB Max Memory Used: 21 MB
----
So the function is completely fine. It turns out I'm not very good at reading the manual and should have been returning https://medium.com/@jconning/tutorial-aws-lambda-with-api-gateway-36a8513ec8e3[a map instead of a string]:
____
API Gateway expects to see a json map with keys "`body`", "`headers`", and "`statusCode`".
____
Let's update our handler function and re-deploy.
[source,python]
----
def noop(event, context):
return {
"body": "hello",
"headers": {},
"statusCode": 200
}
----
Now we're ready to try the endpoint again:
[source,bash]
----
$ curl -X POST https://29nb5rmmd0.execute-api.us-east-1.amazonaws.com/dev/noOp
hello
----
Much better! | Learn how to get up and running with a simple Python Serverless function that works with an AWS HTTP gateway. | null | [
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] | serverless-aws-http-gateway-502-bad-gateway | https://markhneedham.com/blog/2017/08/11/serverless-aws-http-gateway-502-bad-gateway |
false | 2017-08-06 19:03:30 | Serverless: Python - virtualenv - { "errorMessage": "Unable to import module 'handler'" } | [
"python",
"serverless"
] | [
"Software Development"
] | I've been using the https://serverless.com/[Serverless] library to deploy and run some Python functions on AWS lambda recently and was initially confused about how to handle my dependencies.
I tend to create a new https://virtualenv.pypa.io/en/stable/[virtualenv] for each of my project so let's get that setup first:
== Prerequisites
[source,bash]
----
$ npm install serverless
----
[source,bash]
----
$ virtualenv -p python3 a
$ . a/bin/activate
----
Now let's create our Serverless project. I'm going to install the http://docs.python-requests.org/en/master/[requests] library so that I can use it in my function.
== My Serverless project
_serverless.yaml_
[source,yaml]
----
service: python-starter-template
frameworkVersion: ">=1.2.0 <2.0.0"
provider:
name: aws
runtime: python3.6
timeout: 180
functions:
starter-function:
name: Starter
handler: handler.starter
----
_handler.py_
[source,python]
----
import requests
def starter(event, context):
print("event:", event, "context:", context)
r = requests.get("http://www.google.com")
print(r.status_code)
----
[source,bash]
----
$ pip install requests
----
Ok, we're now ready to try out the function. A nice feature of Serverless is that it lets us try out functions locally before we deploy them onto one of the Cloud providers:
[source,bash]
----
$ ./node_modules/serverless/bin/serverless invoke local --function starter-function
event: {} context: <__main__.FakeLambdaContext object at 0x10bea9a20>
200
null
----
So far so good. Next we'll deploy our function to AWS. I'm assuming you've already got your credentials setup but if not you can follow the https://serverless.com/framework/docs/providers/aws/guide/credentials/[tutorial on the Serverless page].
[source,bash]
----
$ ./node_modules/serverless/bin/serverless deploy
Serverless: Packaging service...
Serverless: Excluding development dependencies...
Serverless: Uploading CloudFormation file to S3...
Serverless: Uploading artifacts...
Serverless: Uploading service .zip file to S3 (26.48 MB)...
Serverless: Validating template...
Serverless: Updating Stack...
Serverless: Checking Stack update progress...
.........
Serverless: Stack update finished...
Service Information
service: python-starter-template
stage: dev
region: us-east-1
api keys:
None
endpoints:
None
functions:
starter-function: python-starter-template-dev-starter-function
----
Now let's invoke our function:
[source,bash]
----
$ ./node_modules/serverless/bin/serverless invoke --function starter-function
{
"errorMessage": "Unable to import module 'handler'"
}
Error --------------------------------------------------
Invoked function failed
For debugging logs, run again after setting the "SLS_DEBUG=*" environment variable.
Get Support --------------------------------------------
Docs: docs.serverless.com
Bugs: github.com/serverless/serverless/issues
Forums: forum.serverless.com
Chat: gitter.im/serverless/serverless
Your Environment Information -----------------------------
OS: darwin
Node Version: 6.7.0
Serverless Version: 1.19.0
----
Hmmm, that's odd - I wonder why it can't import our handler module? We can call the logs function to check. The logs are usually a few seconds behind so we'll have to be a bit patient if we don't see them immediately.
[source,bash]
----
$ ./node_modules/serverless/bin/serverless logs --function starter-function
START RequestId: 735efa84-7ad0-11e7-a4ef-d5baf0b46552 Version: $LATEST
Unable to import module 'handler': No module named 'requests'
END RequestId: 735efa84-7ad0-11e7-a4ef-d5baf0b46552
REPORT RequestId: 735efa84-7ad0-11e7-a4ef-d5baf0b46552 Duration: 0.42 ms Billed Duration: 100 ms Memory Size: 1024 MB Max Memory Used: 22 MB
----
That explains it - the requests module wasn't imported.
If we look in +++<cite>+++.serverless/python-starter-template.zip</p> we can see that the requests module is hidden inside the +++<cite>+++a+++</cite>+++ directory and the instance of Python that runs on Lambda doesn't know where to find it. </p>
I'm sure there are other ways of solving this but the easiest one I found is a Serverless plugin called https://www.npmjs.com/package/serverless-python-requirements[serverless-python-requirements].
So how does this plugin work?
____
A Serverless v1.x plugin to automatically bundle dependencies from requirements.txt and make them available in your PYTHONPATH.
____
Doesn't sound too tricky - we can use +++<cite>+++pip freeze+++</cite>+++ to get our list of requirements and write them into a file. Let's rework +++<cite>+++serverless.yaml+++</cite>+++ to make use of the plugin:
== My Serverless project using serverless-python-requirements ~~~bash $ npm install --save serverless-python-requirements ~~~ ~~~bash $ pip freeze > requirements.txt $ cat requirements.txt certifi==2017.7.27.1 chardet==3.0.4 idna==2.5 requests==2.18.3 urllib3==1.22 ~~~
_serverless.yaml_ ~~~yaml service: python-starter-template frameworkVersion: ">=1.2.0 <2.0.0" provider: name: aws runtime: python3.6 timeout: 180 plugins: - serverless-python-requirements functions: starter-function: name: Starter handler: handler.starter package: exclude: - a/** # virtualenv ~~~
We have two changes from before:
* We added the +++<cite>+++serverless-python-requirements+++</cite>+++ plugin
* We excluded the +++<cite>+++a+++</cite>+++ directory since we don't need it
Let's deploy again and run the function: ~~~bash $ ./node_modules/serverless/bin/serverless deploy Serverless: Parsing Python requirements.txt Serverless: Installing required Python packages for runtime python3.6\... Serverless: Linking required Python packages\... Serverless: Packaging service\... Serverless: Excluding development dependencies\... Serverless: Unlinking required Python packages\... Serverless: Uploading CloudFormation file to S3\... Serverless: Uploading artifacts\... Serverless: Uploading service .zip file to S3 (14.39 MB)\... Serverless: Validating template\... Serverless: Updating Stack\... Serverless: Checking Stack update progress\... \...\...\... Serverless: Stack update finished\... Service Information service: python-starter-template stage: dev region: us-east-1 api keys: None endpoints: None functions: starter-function: python-starter-template-dev-starter-function ~~~ ~~~bash $ ./node_modules/serverless/bin/serverless invoke --function starter-function null ~~~
Looks good. Let's check the logs: ~~~bash $ ./node_modules/serverless/bin/serverless logs --function starter-function START RequestId: 61e8eda7-7ad4-11e7-8914-03b8a7793a24 Version: $LATEST event: {} context: <__main__.LambdaContext object at 0x7f568b105f28> 200 END RequestId: 61e8eda7-7ad4-11e7-8914-03b8a7793a24 REPORT RequestId: 61e8eda7-7ad4-11e7-8914-03b8a7793a24 Duration: 55.55 ms Billed Duration: 100 ms Memory Size: 1024 MB Max Memory Used: 29 M ~~~
All good here as well so we're done! +++</cite>+++ | null | null | [
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] | serverless-python-virtualenv-errormessage-unable-import-module-handler | https://markhneedham.com/blog/2017/08/06/serverless-python-virtualenv-errormessage-unable-import-module-handler |
false | 2017-08-13 07:23:46 | Neo4j: Cypher - Rounding of floating point numbers/BigDecimals | [
"neo4j",
"cypher",
"apoc"
] | [
"neo4j"
] | I was doing some data cleaning a few days ago and wanting to multiply a value by 1 million. My https://neo4j.com/developer/cypher-query-language/[Cypher] code to do this looked like this:
[source,cypher]
----
with "8.37" as rawNumeric
RETURN toFloat(rawNumeric) * 1000000 AS numeric
╒═════════════════╕
│"numeric" │
╞═════════════════╡
│8369999.999999999│
└─────────────────┘
----
Unfortunately that suffers from the classic rounding error when working with floating point numbers. I couldn't figure out a way to solve it using pure Cypher, but there tends to be an https://neo4j-contrib.github.io/neo4j-apoc-procedures/[APOC] function to solve every problem and https://neo4j-contrib.github.io/neo4j-apoc-procedures/index32.html#_handle_biginteger_and_bigdecimal[this was no exception].
I'm using Neo4j 3.2.3 so I downloaded the corresponding APOC jar and put it in a plugins directory:
[source,bash]
----
$ ls -lh plugins/
total 3664
-rw-r--r--@ 1 markneedham staff 1.8M 9 Aug 09:14 apoc-3.2.0.4-all.jar
----
I'm using Docker so I needed to tell that where my plugins folder lives:
[source,bash]
----
$ docker run -v $PWD/plugins:/plugins \
-p 7474:7474 \
-p 7687:7687 \
-e NEO4J_AUTH="none" \
neo4j:3.2.3
----
Now we're reading to try out our new function:
[source,cypher]
----
with "8.37" as rawNumeric
RETURN apoc.number.exact.mul(rawNumeric,"1000000") AS apocConversion
╒════════════════╕
│"apocConversion"│
╞════════════════╡
│"8370000.00" │
└────────────────┘
----
That almost does what we want, but the result is a string rather than numeric value. It's not too difficult to fix though:
[source,cypher]
----
with "8.37" as rawNumeric
RETURN toFloat(apoc.number.exact.mul(rawNumeric,"1000000")) AS apocConversion
╒════════════════╕
│"apocConversion"│
╞════════════════╡
│8370000 │
└────────────────┘
----
That's more like it! | Learn how to deal with floating point arithmetic and rounding errors when working with Neo4j's Cypher query language. APOC comes to the rescue. | null | [
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] | neo4j-cypher-rounding-of-floating-point-numbersbigdecimals | https://markhneedham.com/blog/2017/08/13/neo4j-cypher-rounding-of-floating-point-numbersbigdecimals |
false | 2017-01-21 10:49:46 | Go vs Python: Parsing a JSON response from a HTTP API | [
"go",
"golang"
] | [
"Python"
] | As part of a https://www.meetup.com/graphdb-london/events/236256437/[recommendations with Neo4j talk] that I've presented a few times over the last year I have a set of scripts that download some data from the https://www.meetup.com/meetup_api/[meetup.com API].
They're all written in Python but I thought it'd be a fun exercise to see what they'd look like in Go. My eventual goal is to try and parallelise the API calls.
This is the Python version of the script:
[source,python]
----
import requests
import os
import json
key = os.environ['MEETUP_API_KEY']
lat = "51.5072"
lon = "0.1275"
seed_topic = "nosql"
uri = "https://api.meetup.com/2/groups?&topic={0}&lat={1}&lon={2}&key={3}".format(seed_topic, lat, lon, key)
r = requests.get(uri)
all_topics = [topic["urlkey"] for result in r.json()["results"] for topic in result["topics"]]
for topic in all_topics:
print topic
----
We're using the http://docs.python-requests.org/en/master/[requests] library to send a request to the meetup API to get the groups which have the topic 'nosql' in the London area. We then parse the response and print out the topics.
Now to do the same thing in Go! The first bit of the script is almost identical:
[source,go]
----
import (
"fmt"
"os"
"net/http"
"log"
"time"
)
func handleError(err error) {
if err != nil {
fmt.Println(err)
log.Fatal(err)
}
}
func main() {
var httpClient = &http.Client{Timeout: 10 * time.Second}
seedTopic := "nosql"
lat := "51.5072"
lon := "0.1275"
key := os.Getenv("MEETUP_API_KEY")
uri := fmt.Sprintf("https://api.meetup.com/2/groups?&topic=%s&lat=%s&lon=%s&key=%s", seedTopic, lat, lon, key)
response, err := httpClient.Get(uri)
handleError(err)
defer response.Body.Close()
fmt.Println(response)
}
----
If we run that this is the output we see:
[source,bash]
----
$ go cmd/blog/main.go
&{200 OK 200 HTTP/2.0 2 0 map[X-Meetup-Request-Id:[2d3be3c7-a393-4127-b7aa-076f150499e6] X-Ratelimit-Reset:[10] Cf-Ray:[324093a73f1135d2-LHR] X-Oauth-Scopes:[basic] Etag:["35a941c5ea3df9df4204d8a4a2d60150"] Server:[cloudflare-nginx] Set-Cookie:[__cfduid=d54db475299a62af4bb963039787e2e3d1484894864; expires=Sat, 20-Jan-18 06:47:44 GMT; path=/; domain=.meetup.com; HttpOnly] X-Meetup-Server:[api7] X-Ratelimit-Limit:[30] X-Ratelimit-Remaining:[29] X-Accepted-Oauth-Scopes:[basic] Vary:[Accept-Encoding,User-Agent,Accept-Language] Date:[Fri, 20 Jan 2017 06:47:45 GMT] Content-Type:[application/json;charset=utf-8]] 0xc420442260 -1 [] false true map[] 0xc4200d01e0 0xc4202b2420}
----
So far so good. Now we need to parse the response that comes back.
Most of the examples that I came across http://stackoverflow.com/questions/17156371/how-to-get-json-response-in-golang[suggest creating a struct with all the fields] that you want to extract from the JSON document but that feels a bit over kill for such a simple script.
Instead we can just create maps of (string \-> interface{}) and then apply type conversions where appropriate. I ended up with the following code to extract the topics:
[source,go]
----
import "encoding/json"
var target map[string]interface{}
decoder := json.NewDecoder(response.Body)
decoder.Decode(&target)
for _, rawGroup := range target["results"].([]interface{}) {
group := rawGroup.(map[string]interface{})
for _, rawTopic := range group["topics"].([]interface{}) {
topic := rawTopic.(map[string]interface{})
fmt.Println(topic["urlkey"])
}
}
----
It's more verbose that the Python version because we have to explicitly type each thing we take out of the map at every stage, but it's not too bad. This is the full script:
[source,go]
----
package main
import (
"fmt"
"os"
"net/http"
"log"
"time"
"encoding/json"
)
func handleError(err error) {
if err != nil {
fmt.Println(err)
log.Fatal(err)
}
}
func main() {
var httpClient = &http.Client{Timeout: 10 * time.Second}
seedTopic := "nosql"
lat := "51.5072"
lon := "0.1275"
key := os.Getenv("MEETUP_API_KEY")
uri := fmt.Sprintf("https://api.meetup.com/2/groups?&topic=%s&lat=%s&lon=%s&key=%s", seedTopic, lat, lon, key)
response, err := httpClient.Get(uri)
handleError(err)
defer response.Body.Close()
var target map[string]interface{}
decoder := json.NewDecoder(response.Body)
decoder.Decode(&target)
for _, rawGroup := range target["results"].([]interface{}) {
group := rawGroup.(map[string]interface{})
for _, rawTopic := range group["topics"].([]interface{}) {
topic := rawTopic.(map[string]interface{})
fmt.Println(topic["urlkey"])
}
}
}
----
Once I've got these topics the next step is to make more API calls to get the groups for those topics.
I want to make those API calls in parallel while making sure I don't exceed the rate limit restrictions on the API and I think I can make use of go routines, channels, and timers to do that. But that's for another post! | Parsing meetup.com's HTTP API using Go and Python. | null | [
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] | go-vs-python-parsing-a-json-response-from-a-http-api | https://markhneedham.com/blog/2017/01/21/go-vs-python-parsing-a-json-response-from-a-http-api |
false | 2017-01-31 05:57:11 | Go: Multi-threaded writing to a CSV file | [
"go",
"golang"
] | [
"Go"
] | As part of a Go script I've been working on I wanted to write to a CSV file from multiple Go routines, but realised that the built in CSV Writer isn't thread safe.
My first attempt at writing to the CSV file looked like this:
[source,go]
----
package main
import (
"encoding/csv"
"os"
"log"
"strconv"
)
func main() {
csvFile, err := os.Create("/tmp/foo.csv")
if err != nil {
log.Panic(err)
}
w := csv.NewWriter(csvFile)
w.Write([]string{"id1","id2","id3"})
count := 100
done := make(chan bool, count)
for i := 0; i < count; i++ {
go func(i int) {
w.Write([]string {strconv.Itoa(i), strconv.Itoa(i), strconv.Itoa(i)})
done <- true
}(i)
}
for i:=0; i < count; i++ {
<- done
}
w.Flush()
}
----
This script should output the numbers from 0-99 three times on each line. Some rows in the file are written correctly, but as we can see below, some aren't:
[source,text]
----
40,40,40
37,37,37
38,38,38
18,18,39
^@,39,39
...
67,67,70,^@70,70
65,65,65
73,73,73
66,66,66
72,72,72
75,74,75,74,75
74
7779^@,79,77
...
----
One way that we can make our script safe is to use a mutex whenever we're calling any methods on the CSV writer. I wrote the following code to do this:
[source,go]
----
type CsvWriter struct {
mutex *sync.Mutex
csvWriter *csv.Writer
}
func NewCsvWriter(fileName string) (*CsvWriter, error) {
csvFile, err := os.Create(fileName)
if err != nil {
return nil, err
}
w := csv.NewWriter(csvFile)
return &CsvWriter{csvWriter:w, mutex: &sync.Mutex{}}, nil
}
func (w *CsvWriter) Write(row []string) {
w.mutex.Lock()
w.csvWriter.Write(row)
w.mutex.Unlock()
}
func (w *CsvWriter) Flush() {
w.mutex.Lock()
w.csvWriter.Flush()
w.mutex.Unlock()
}
----
We create a mutex when +++<cite>+++NewCsvWriter+++</cite>+++ instantiates +++<cite>+++CsvWriter+++</cite>+++ and then use it in the +++<cite>+++Write+++</cite>+++ and +++<cite>+++Flush+++</cite>+++ functions so that only one go routine at a time can access the underlying +++<cite>+++CsvWriter+++</cite>+++. We then tweak the initial script to call this class instead of calling CsvWriter directly:
[source,go]
----
func main() {
w, err := NewCsvWriter("/tmp/foo-safe.csv")
if err != nil {
log.Panic(err)
}
w.Write([]string{"id1","id2","id3"})
count := 100
done := make(chan bool, count)
for i := 0; i < count; i++ {
go func(i int) {
w.Write([]string {strconv.Itoa(i), strconv.Itoa(i), strconv.Itoa(i)})
done <- true
}(i)
}
for i:=0; i < count; i++ {
<- done
}
w.Flush()
}
----
And now if we inspect the CSV file all lines have been written successfully:
[source,text]
----
...
25,25,25
13,13,13
29,29,29
32,32,32
26,26,26
30,30,30
27,27,27
31,31,31
28,28,28
34,34,34
35,35,35
33,33,33
37,37,37
36,36,36
...
----
That's all for now. If you have any suggestions for a better way to do this do let me know in the comments or on twitter - I'm https://twitter.com/markhneedham[@markhneedham] | Writing to a CSV from multiple threads in the Go programming language. | null | [
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] | go-multi-threaded-writing-csv-file | https://markhneedham.com/blog/2017/01/31/go-multi-threaded-writing-csv-file |
false | 2017-06-04 09:22:47 | Kaggle: House Prices: Advanced Regression Techniques - Trying to fill in missing values | [
"kaggle",
"python"
] | [
"Data Science",
"Python"
] | I've been playing around with the data in Kaggle's https://www.kaggle.com/c/house-prices-advanced-regression-techniques[House Prices: Advanced Regression Techniques] and while replicating https://www.kaggle.com/poonaml/house-prices-data-exploration-and-visualisation[Poonam Ligade's exploratory analysis] I wanted to see if I could create a model to fill in some of the missing values.
Poonam wrote the following code to identify which columns in the dataset had the most missing values:
[source,python]
----
import pandas as pd
train = pd.read_csv('train.csv')
null_columns=train.columns[train.isnull().any()]
>>> print(train[null_columns].isnull().sum())
LotFrontage 259
Alley 1369
MasVnrType 8
MasVnrArea 8
BsmtQual 37
BsmtCond 37
BsmtExposure 38
BsmtFinType1 37
BsmtFinType2 38
Electrical 1
FireplaceQu 690
GarageType 81
GarageYrBlt 81
GarageFinish 81
GarageQual 81
GarageCond 81
PoolQC 1453
Fence 1179
MiscFeature 1406
dtype: int64
----
The one that I'm most interested in is +++<cite>+++LotFrontage+++</cite>+++, which describes 'Linear feet of street connected to property'. There are a few other columns related to lots so I thought I might be able to use them to fill in the missing +++<cite>+++LotFrontage+++</cite>+++ values.
We can write the following code to find a selection of the rows missing a +++<cite>+++LotFrontage+++</cite>+++ value:
[source,python]
----
cols = [col for col in train.columns if col.startswith("Lot")]
missing_frontage = train[cols][train["LotFrontage"].isnull()]
>>> print(missing_frontage.head())
LotFrontage LotArea LotShape LotConfig
7 NaN 10382 IR1 Corner
12 NaN 12968 IR2 Inside
14 NaN 10920 IR1 Corner
16 NaN 11241 IR1 CulDSac
24 NaN 8246 IR1 Inside
----
I want to use http://scikit-learn.org/[scikit-learn]'s http://scikit-learn.org/stable/modules/generated/sklearn.linear_model.LinearRegression.html[linear regression model] which only works with numeric values so we need to convert our categorical variables into numeric equivalents. We can use pandas https://pandas.pydata.org/pandas-docs/stable/generated/pandas.get_dummies.html[get_dummies] function for this.
Let's try it out on the +++<cite>+++LotShape+++</cite>+++ column:
[source,python]
----
sub_train = train[train.LotFrontage.notnull()]
dummies = pd.get_dummies(sub_train[cols].LotShape)
>>> print(dummies.head())
IR1 IR2 IR3 Reg
0 0 0 0 1
1 0 0 0 1
2 1 0 0 0
3 1 0 0 0
4 1 0 0 0
----
Cool, that looks good. We can do the same with +++<cite>+++LotConfig+++</cite>+++ and then we need to add these new columns onto the original DataFrame. We can use pandas https://pandas.pydata.org/pandas-docs/stable/generated/pandas.concat.html[concat] function to do this.
[source,python]
----
import numpy as np
data = pd.concat([
sub_train[cols],
pd.get_dummies(sub_train[cols].LotShape),
pd.get_dummies(sub_train[cols].LotConfig)
], axis=1).select_dtypes(include=[np.number])
>>> print(data.head())
LotFrontage LotArea IR1 IR2 IR3 Reg Corner CulDSac FR2 FR3 Inside
0 65.0 8450 0 0 0 1 0 0 0 0 1
1 80.0 9600 0 0 0 1 0 0 1 0 0
2 68.0 11250 1 0 0 0 0 0 0 0 1
3 60.0 9550 1 0 0 0 1 0 0 0 0
4 84.0 14260 1 0 0 0 0 0 1 0 0
----
We can now split +++<cite>+++data+++</cite>+++ into train and test sets and create a model.
[source,python]
----
from sklearn import linear_model
from sklearn.model_selection import train_test_split
X = data.drop(["LotFrontage"], axis=1)
y = data.LotFrontage
X_train, X_test, y_train, y_test = train_test_split(X, y, random_state=42, test_size=.33)
lr = linear_model.LinearRegression()
model = lr.fit(X_train, y_train)
----
Now it's time to give it a try on the test set:
[source,python]
----
>>> print("R^2 is: \n", model.score(X_test, y_test))
R^2 is:
-0.84137438493
----
Hmm that didn't work too well - an R{caret}2 score of less than 0 suggests that we'd be better off just predicting the average +++<cite>+++LotFrontage+++</cite>+++ regardless of any of the other features. We can confirm that with the following code:
[source,python]
----
from sklearn.metrics import r2_score
>>> print(r2_score(y_test, np.repeat(y_test.mean(), len(y_test))))
0.0
----
whereas if we had all of the values correct we'd get a score of 1:
[source,python]
----
>>> print(r2_score(y_test, y_test))
1.0
----
In summary, not a very successful experiment. Poonam derives a value for +++<cite>+++LotFrontage+++</cite>+++ based on the square root of +++<cite>+++LotArea+++</cite>+++ so perhaps that's the best we can do here. | null | null | [
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] | kaggle-house-prices-advanced-regression-techniques-trying-fill-missing-values | https://markhneedham.com/blog/2017/06/04/kaggle-house-prices-advanced-regression-techniques-trying-fill-missing-values |
false | 2017-06-16 05:55:29 | scikit-learn: Random forests - Feature Importance | [
"kaggle",
"python",
"scikit-learn",
"data-science",
"random-forest"
] | [
"Data Science",
"Python"
] | As I http://www.markhneedham.com/blog/2017/06/04/kaggle-house-prices-advanced-regression-techniques-trying-fill-missing-values/[mentioned in a blog post a couple of weeks ago], I've been playing around with the https://www.kaggle.com/c/house-prices-advanced-regression-techniques[Kaggle House Prices competition] and the most recent thing I tried was training a random forest regressor.
Unfortunately, although it gave me better results locally it got a worse score on the unseen data, which I figured meant I'd https://en.wikipedia.org/wiki/Overfitting[overfitted the model].
I wasn't really sure how to work out if that theory was true or not, but by chance I was reading Chris Albon's blog and found a post where he explains how to https://chrisalbon.com/machine-learning/random_forest_classifier_example_scikit.html[inspect the importance of every feature in a random forest]. Just what I needed!
Stealing from Chris' post I wrote the following code to work out the feature importance for my dataset:
== Prerequisites
[source,python]
----
import numpy as np
import pandas as pd
from sklearn.ensemble import RandomForestRegressor
from sklearn.model_selection import train_test_split
# We'll use this library to make the display pretty
from tabulate import tabulate
----
== Load Data
[source,python]
----
train = pd.read_csv('train.csv')
# the model can only handle numeric values so filter out the rest
data = train.select_dtypes(include=[np.number]).interpolate().dropna()
----
== Split train/test sets
[source,python]
----
y = train.SalePrice
X = data.drop(["SalePrice", "Id"], axis=1)
X_train, X_test, y_train, y_test = train_test_split(X, y, random_state=42, test_size=.33)
----
== Train model
[source,python]
----
clf = RandomForestRegressor(n_jobs=2, n_estimators=1000)
model = clf.fit(X_train, y_train)
----
== Feature Importance
[source,python]
----
headers = ["name", "score"]
values = sorted(zip(X_train.columns, model.feature_importances_), key=lambda x: x[1] * -1)
print(tabulate(values, headers, tablefmt="plain"))
----
[source,bash]
----
name score
OverallQual 0.553829
GrLivArea 0.131
BsmtFinSF1 0.0374779
TotalBsmtSF 0.0372076
1stFlrSF 0.0321814
GarageCars 0.0226189
GarageArea 0.0215719
LotArea 0.0214979
YearBuilt 0.0184556
2ndFlrSF 0.0127248
YearRemodAdd 0.0126581
WoodDeckSF 0.0108077
OpenPorchSF 0.00945239
LotFrontage 0.00873811
TotRmsAbvGrd 0.00803121
GarageYrBlt 0.00760442
BsmtUnfSF 0.00715158
MasVnrArea 0.00680341
ScreenPorch 0.00618797
Fireplaces 0.00521741
OverallCond 0.00487722
MoSold 0.00461165
MSSubClass 0.00458496
BedroomAbvGr 0.00253031
FullBath 0.0024245
YrSold 0.00211638
HalfBath 0.0014954
KitchenAbvGr 0.00140786
BsmtFullBath 0.00137335
BsmtFinSF2 0.00107147
EnclosedPorch 0.000951266
3SsnPorch 0.000501238
PoolArea 0.000261668
LowQualFinSF 0.000241304
BsmtHalfBath 0.000179506
MiscVal 0.000154799
----
So +++<cite>+++OverallQual+++</cite>+++ is quite a good predictor but then there's a steep fall to +++<cite>+++GrLivArea+++</cite>+++ before things really tail off after +++<cite>+++WoodDeckSF+++</cite>+++.
I think this is telling us that a lot of these features aren't useful at all and can be removed from the model. There are also a bunch of categorical/factor variables that have been stripped out of the model but might be predictive of the house price.
These are the next things I'm going to explore:
* Make the categorical variables numeric (perhaps by using http://scikit-learn.org/stable/modules/generated/sklearn.preprocessing.OneHotEncoder.html[one hot encoding] for some of them)
* Remove the most predictive features and build a model that only uses the other features | null | null | [
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] | scikit-learn-random-forests-feature-importance | https://markhneedham.com/blog/2017/06/16/scikit-learn-random-forests-feature-importance |
false | 2017-06-23 12:26:49 | Shell: Create a comma separated string | [
"shell",
"scripting",
"bash"
] | [
"Shell Scripting"
] | I recently needed to generate a string with comma separated values, based on iterating a range of numbers.
e.g. we should get the following output where n = 3
[source,bash]
----
foo-0,foo-1,foo-2
----
I only had the shell available to me so I couldn't shell out into Python or Ruby for example. That means it's bash scripting time!
If we want to iterate a range of numbers and print them out on the screen we can write the following code:
[source,bash]
----
n=3
for i in $(seq 0 $(($n > 0? $n-1: 0))); do
echo "foo-$i"
done
foo-0
foo-1
foo-2
----
Combining them into a string is a bit more tricky, but luckily I found http://ajhaupt.blogspot.co.uk/2010/12/create-comma-separated-string-in-shell.html[a great blog post] by Andreas Haupt which shows what to do. Andreas is solving a more complicated problem than me but these are the bits of code that we need from the post.
[source,bash]
----
n=3
combined=""
for i in $(seq 0 $(($n > 0? $n-1: 0))); do
token="foo-$i"
combined="${combined}${combined:+,}$token"
done
echo $combined
foo-0,foo-1,foo-2
----
This won't work if you set +++<cite>+++n<0+++</cite>+++ but that's ok for me! I'll let Andreas explain how it works:
* +++<cite>+++${combined:+,}+++</cite>+++ will return either a comma (if +++<cite>+++combined+++</cite>+++ exists and is set) or nothing at all.
* In the first invocation of the loop +++<cite>+++combined+++</cite>+++ is not yet set and nothing is put out.
* In the next rounds +++<cite>+++combined+++</cite>+++ is set and a comma will be put out.
We can see how it in action by printing out the value of +++<cite>+++$combined+++</cite>+++ after each iteration of the loop:
[source,bash]
----
n=3
combined=""
for i in $(seq 0 $(($n > 0 ? $n-1: 0))); do
token="foo-$i"
combined="${combined}${combined:+,}$token"
echo $combined
done
foo-0
foo-0,foo-1
foo-0,foo-1,foo-2
----
Looks good to me! | null | null | [
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] | shell-create-comma-separated-string | https://markhneedham.com/blog/2017/06/23/shell-create-comma-separated-string |
false | 2017-06-14 08:49:06 | Kubernetes: Which node is a pod on? | [
"kubernetes"
] | [
"Kubernetes"
] | When running Kubernetes on a cloud provider, rather than locally using https://github.com/kubernetes/minikube[minikube], it's useful to know which node a pod is running on.
The normal command to list pods doesn't contain this information:
[source,bash]
----
$ kubectl get pod
NAME READY STATUS RESTARTS AGE
neo4j-core-0 1/1 Running 0 6m
neo4j-core-1 1/1 Running 0 6m
neo4j-core-2 1/1 Running 0 2m
----
I spent a while searching for a command that I could use before I came across https://tachingchen.com/blog/Kubernetes-Assigning-Pod-to-Nodes/[Ta-Ching Chen's blog post] while looking for something else.
Ta-Ching points out that we just need to add the flag +++<cite>+++-o wide+++</cite>+++ to our original command to get the information we require:
[source,bash]
----
$ kubectl get pod -o wide
NAME READY STATUS RESTARTS AGE IP NODE
neo4j-core-0 1/1 Running 0 6m 10.32.3.6 gke-neo4j-cluster-default-pool-ded394fa-0kpw
neo4j-core-1 1/1 Running 0 6m 10.32.3.7 gke-neo4j-cluster-default-pool-ded394fa-0kpw
neo4j-core-2 1/1 Running 0 2m 10.32.0.10 gke-neo4j-cluster-default-pool-ded394fa-kp68
----
Easy! | null | null | [
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] | kubernetes-node-pod | https://markhneedham.com/blog/2017/06/14/kubernetes-node-pod |
false | 2017-12-03 17:23:14 | Python: Combinations of values on and off | [
"python",
"python3"
] | [
"Python"
] | In my continued exploration of Kaggle's https://www.kaggle.com/c/spooky-author-identification/leaderboard[Spooky Authors competition], I wanted to run a http://scikit-learn.org/stable/modules/ensemble.html#using-the-votingclassifier-with-gridsearch[GridSearch] turning on and off different classifiers to work out the best combination.
I therefore needed to generate combinations of 1s and 0s enabling different classifiers.
e.g. if we had 3 classifiers we'd generate these combinations
[source,text]
----
0 0 1
0 1 0
1 0 0
1 1 0
1 0 1
0 1 1
1 1 1
----
where\...
* '0 0 1' means: classifier1 is disabled, classifier3 is disabled, classifier3 is enabled
* '0 1 0' means: classifier1 is disabled, classifier3 is enabled, classifier3 is disabled
* '1 1 0' means: classifier1 is enabled, classifier3 is enabled, classifier3 is disabled
* '1 1 1' means: classifier1 is enabled, classifier3 is enabled, classifier3 is enabled
\...and so on. In other words, we need to generate the binary representation for all the values from 1 to 2^number of classifiers^-1.
We can write the following code fragments to calculate a 3 bit representation of different numbers:
[source,python]
----
>>> "{0:0b}".format(1).zfill(3)
'001'
>>> "{0:0b}".format(5).zfill(3)
'101'
>>> "{0:0b}".format(6).zfill(3)
'110'
----
We need an array of 0s and 1s rather than a string, so let's use the +++<cite>+++list+++</cite>+++ function to create our array and then cast each value to an integer:
[source,python]
----
>>> [int(x) for x in list("{0:0b}".format(1).zfill(3))]
[0, 0, 1]
----
Finally we can wrap that code inside a list comprehension:
[source,python]
----
def combinations_on_off(num_classifiers):
return [[int(x) for x in list("{0:0b}".format(i).zfill(num_classifiers))]
for i in range(1, 2 ** num_classifiers)]
----
And let's check it works:
[source,python]
----
>>> for combination in combinations_on_off(3):
print(combination)
[0, 0, 1]
[0, 1, 0]
[0, 1, 1]
[1, 0, 0]
[1, 0, 1]
[1, 1, 0]
[1, 1, 1]
----
what about if we have 4 classifiers?
[source,python]
----
>>> for combination in combinations_on_off(4):
print(combination)
[0, 0, 0, 1]
[0, 0, 1, 0]
[0, 0, 1, 1]
[0, 1, 0, 0]
[0, 1, 0, 1]
[0, 1, 1, 0]
[0, 1, 1, 1]
[1, 0, 0, 0]
[1, 0, 0, 1]
[1, 0, 1, 0]
[1, 0, 1, 1]
[1, 1, 0, 0]
[1, 1, 0, 1]
[1, 1, 1, 0]
[1, 1, 1, 1]
----
Perfect! We can now use this function to help work out which combinations of classifiers are needed. | null | null | [
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] | python-combinations-values-off | https://markhneedham.com/blog/2017/12/03/python-combinations-values-off |
false | 2017-12-05 22:19:34 | scikit-learn: Building a multi class classification ensemble | [
"scikit-learn",
"ensemble",
"votingclassifier",
"classification",
"machine-learning"
] | [
"Python"
] | For the Kaggle https://www.kaggle.com/c/spooky-author-identification[Spooky Author Identification] I wanted to combine multiple classifiers together into an ensemble and found the http://scikit-learn.org/stable/modules/ensemble.html#voting-classifier[+++<cite>+++VotingClassifier+++</cite>+++] that does exactly that.
We need to predict the probability that a sentence is written by one of three authors so the VotingClassifier needs to make a 'soft' prediction. If we only needed to know the most likely author we could have it make a 'hard' prediction instead.
We start with three classifiers which generate different n-gram based features. The code for those is as follows:
[source,python]
----
from sklearn import linear_model
from sklearn.ensemble import VotingClassifier
from sklearn.feature_extraction.text import CountVectorizer
from sklearn.naive_bayes import MultinomialNB
from sklearn.pipeline import Pipeline
ngram_pipe = Pipeline([
('cv', CountVectorizer(ngram_range=(1, 2))),
('mnb', MultinomialNB())
])
unigram_log_pipe = Pipeline([
('cv', CountVectorizer()),
('logreg', linear_model.LogisticRegression())
])
----
We can combine those classifiers together like this:
[source,python]
----
classifiers = [
("ngram", ngram_pipe),
("unigram", unigram_log_pipe),
]
mixed_pipe = Pipeline([
("voting", VotingClassifier(classifiers, voting="soft"))
])
----
Now it's time to test our ensemble. I got the code for the test function from https://www.kaggle.com/sohier/intermediate-tutorial-python/[Sohier Dane]'s tutorial.
[source,python]
----
import pandas as pd
import numpy as np
from sklearn.model_selection import StratifiedKFold
from sklearn import metrics
Y_COLUMN = "author"
TEXT_COLUMN = "text"
def test_pipeline(df, nlp_pipeline):
y = df[Y_COLUMN].copy()
X = pd.Series(df[TEXT_COLUMN])
rskf = StratifiedKFold(n_splits=5, random_state=1)
losses = []
accuracies = []
for train_index, test_index in rskf.split(X, y):
X_train, X_test = X[train_index], X[test_index]
y_train, y_test = y[train_index], y[test_index]
nlp_pipeline.fit(X_train, y_train)
losses.append(metrics.log_loss(y_test, nlp_pipeline.predict_proba(X_test)))
accuracies.append(metrics.accuracy_score(y_test, nlp_pipeline.predict(X_test)))
print("{kfolds log losses: {0}, mean log loss: {1}, mean accuracy: {2}".format(
str([str(round(x, 3)) for x in sorted(losses)]),
round(np.mean(losses), 3),
round(np.mean(accuracies), 3)
))
train_df = pd.read_csv("train.csv", usecols=[Y_COLUMN, TEXT_COLUMN])
test_pipeline(train_df, mixed_pipe)
----
Let's run https://gist.github.com/mneedham/0f640497ae3c662fc89fda199b5b7833[the script]:
[source,text]
----
kfolds log losses: ['0.388', '0.391', '0.392', '0.397', '0.398'], mean log loss: 0.393 mean accuracy: 0.849
----
Looks good.
I've actually got several other classifiers as well but I'm not sure which ones should be part of the ensemble. In a future post we'll look at how to use http://scikit-learn.org/stable/modules/generated/sklearn.model_selection.GridSearchCV.html[GridSearch] to work that out. | null | null | [
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] | scikit-learn-building-multi-class-classification-ensemble | https://markhneedham.com/blog/2017/12/05/scikit-learn-building-multi-class-classification-ensemble |
false | 2017-12-27 23:28:35 | Morning Pages: What should I write about? | [
"journalling",
"writing"
] | [
"Software Development"
] | I've been http://juliacameronlive.com/basic-tools/morning-pages/[journalling] for almost 2 years now but some days I get stuck and can't think of anything to write about.
I did a bit of searching to see if anybody had advice on solving this problem and found a few different articles:
* https://blog.doist.com/benefits-of-journaling-81b663a27608[The Productive Benefits of Journaling (plus 11 ideas for making the habit stick)]
* https://medium.com/darius-foroux/read-this-if-you-want-to-keep-a-journal-but-dont-know-how-a3f081d360aa[Read This If You Want To Keep A Journal But Don't Know How]
* http://tinybuddha.com/blog/turn-pain-to-joy-11-tips-for-a-powerful-gratitude-journal/[Turn Pain to Joy: 11 Tips for a Powerful Gratitude Journal]
* https://greatergood.berkeley.edu/article/item/tips_for_keeping_a_gratitude_journal[Tips for Keeping a Gratitude Journal]
* https://www.buzzfeed.com/rachelwmiller/how-to-start-a-bullet-journal?utm_term=.vwdGL53Dp#.swwEzg5kD[WTF Is A Bullet Journal And Why Should You Start One? An Explainer]
The articles talk about different approaches to journalling and since I'm not following one particular approach I thought I'd summarise all their ideas and put them in a document that I can use. I've also added some of my own ones.
Here's the list:
* Something you're grateful for
* An unusual event
* Goals or hopes
* A past event
* Things that are stopping you achieving your goals
* Values that are important to you
* Ideas or nagging thoughts
* What did you do yesterday?
** What did you work on?
** Who did you talk to?
** What book did you read?
** What podcasts did you listen to?
** What TV shows/movies did you watch?
** Where did you go?
* What are you doing today?
* What scares you?
* Decisions you need to make/made - small or big
If you have any other ideas of what I can write about let me know in the comments. While researching for this post I noticed that Julia Cameron, the inventor of Morning Pages, has a new book out - https://www.amazon.co.uk/gp/product/B073QXSCWC/ref=oh_aui_d_detailpage_o00_?ie=UTF8&psc=1[The Right to Write: An Invitation and Initiation into the Writing Life] - so I'm hoping to get some ideas from there as well. | null | null | [
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] | morning-pages-write | https://markhneedham.com/blog/2017/12/27/morning-pages-write |
false | 2017-12-28 11:03:56 | Ethereum Hello World Example using solc and web3 | [
"ethereum",
"blockchain",
"smart-contracts"
] | [
"Ethereum"
] | I've been trying to find an Ethereum Hello World example and came across Thomas Conté's excellent post that shows how to http://hypernephelist.com/2016/12/13/compile-deploy-ethereum-smart-contract-web3-solc.html[compile and deploy an Ethereum smart contract with solc and web3].
In the latest version of web3 the API has changed to be based on promises so I decided to translate Thomas' example.
Let's get started.
== Install npm libraries
We need to install these libraries before we start:
[source,bash]
----
npm install web3
npm install abi-decoder
npm install ethereumjs-testrpc
----
What do these libraries do?
* +++<cite>+++web3+++</cite>+++ is a client library for interacting with an Ethereum blockchain
* +++<cite>+++abi-decoder+++</cite>+++ is used to decode the hash of a smart contract so that we can work out what was in it.
* +++<cite>+++ethereum-testrpc+++</cite>+++ lets us spin up a local test version of Ethereum
== Smart contract
We'll still use the same smart contract as Thomas did. +++<cite>+++Token.sol+++</cite>+++ is a smart contract written in the https://solidity.readthedocs.io/en/develop/[Solidity] language and describes money being transferred between addresses:
+++<cite>+++contracts/Token.sol+++</cite>+++
[source,text]
----
pragma solidity ^0.4.0;
contract Token {
mapping (address => uint) public balances;
function Token() {
balances[msg.sender] = 1000000;
}
function transfer(address _to, uint _amount) {
if (balances[msg.sender] < _amount) {
throw;
}
balances[msg.sender] -= _amount;
balances[_to] += _amount;
}
}
----
Whenever somebody tries to transfer some money we'll put 1,000,000 in their account and then transfer the appropriate amount, assuming there's enough money in the account.
== Start local Ethereum node
Let's start a local Ethereum node. We'll reduce the gas price - the amount you 'pay' to execute a transaction - so we don't run out.
[source,bash]
----
$ ./node_modules/.bin/testrpc --gasPrice 20000
EthereumJS TestRPC v6.0.3 (ganache-core: 2.0.2)
Listening on localhost:8545
----
== Pre requisites
We need to load a few Node.js modules:
[source,javascript]
----
const fs = require("fs"),
abiDecoder = require('abi-decoder'),
Web3 = require('web3'),
solc = require('solc');
----
== Compile smart contract
Next we'll compile our smart contract:
[source,javascript]
----
const input = fs.readFileSync('contracts/Token.sol');
const output = solc.compile(input.toString(), 1);
const bytecode = output.contracts[':Token'].bytecode;
const abi = JSON.parse(output.contracts[':Token'].interface);
----
== Connect to Ethereum and create contract object
Now that we've got the https://github.com/ethereum/wiki/wiki/Ethereum-Contract-ABI[ABI] (Application Binary Interface) we'll connect to our local Ethereum node and create a contract object based on the ABI:
[source,javascript]
----
let provider = new Web3.providers.HttpProvider("http://localhost:8545");
const web3 = new Web3(provider);
let Voting = new web3.eth.Contract(abi);
----
== Add ABI to decoder
Before we interact with the blockchain we'll first add the ABI to our ABI decoder to use later:
[source,javascript]
----
abiDecoder.addABI(abi);
----
== Find (dummy) Ethereum accounts
Now we're ready to create some transactions! We'll need some Ethereum accounts to play with and if we call https://web3js.readthedocs.io/en/1.0/web3-eth.html#getaccounts[web3.eth.getAccounts] we can get a collection of accounts that the node controls. Since our node is a test one these are all dummy accounts.
[source,javascript]
----
web3.eth.getAccounts().then(accounts => {
accounts.forEach(account => {
console.log(account)
})
});
----
[source,text]
----
0xefeaE7B180c7Af4Dfd23207422071599c7dfd2f7
0x3a54BaAFDe6747531a28491FDD2F36Cb61c83663
0x367e1ac67b9a85E438C7fab7648964E5ed12061e
0xB34ECD20Be6eC99e8e9fAF641A343BAc826FFFf1
0xE65587a2951873efE3325793D5729Ef91b15d5b5
0xdA232aEe954a31179E2F5b40E6efbEa27bB89c87
0x7119fEbab069d440747589b0f1fCDDBAdBDd105d
0xCacB2b61dE0Ca12Fd6FECe230d2f956c8Cdfed34
0x4F33BF93612D1B89C8C8872D4Af30Fa2A9CbfaAf
0xA1Ebc0D19dB41A96B5278720F47C2B6Ab2506ccF
----
== Transfer money between accounts
Now that we have some accounts let's transfer some money between them.
[source,javascript]
----
var allAccounts;
web3.eth.getAccounts().then(accounts => {
allAccounts = accounts;
Voting.deploy({data: bytecode}).send({
from: accounts[0],
gas: 1500000,
gasPrice: '30000000000000'
}).on('receipt', receipt => {
Voting.options.address = receipt.contractAddress;
Voting.methods.transfer(accounts[1], 10).send({from: accounts[0]}).then(transaction => {
console.log("Transfer lodged. Transaction ID: " + transaction.transactionHash);
let blockHash = transaction.blockHash
return web3.eth.getBlock(blockHash, true);
}).then(block => {
block.transactions.forEach(transaction => {
console.log(abiDecoder.decodeMethod(transaction.input));
});
allAccounts.forEach(account => {
Voting.methods.balances(account).call({from: allAccounts[0]}).then(amount => {
console.log(account + ": " + amount);
});
});
});
});
});
----
Let's run in:
[source,text]
----
Transfer lodged. Transaction ID: 0x699cbe40121d6c2da7b36a107cd5f28b35a71aff2a0d584f8e734b10f4c49de4
{ name: 'transfer',
params:
[ { name: '_to',
value: '0xeb25dbd0931386eeab267981626ae3908d598404',
type: 'address' },
{ name: '_amount', value: '10', type: 'uint256' } ] }
0x084181d6fDe8bA802Ee85396aB1d25Ddf1d7D061: 999990
0xEb25dbD0931386eEaB267981626AE3908D598404: 10
0x7deB2487E6Ac40f85fB8f5A3bC6896391bf2570F: 0
0xA15ad4371B62afECE5a7A70457F82A30530630a3: 0
0x64644f3B6B95e81A385c8114DF81663C39084C6a: 0
0xBB68FF2935080c807D5A534b1fc481Aa3fafF1C0: 0
0x38d4A3d635B451Cb006d63ce542950C067D47F58: 0
0x7878bA9138361A08522418BD1c8376Af7220a506: 0
0xf400c0e749Fe02E7073E08d713E0A207dc91FBeb: 0
0x7070d1712a25eb7FCf78A549F17705AA66B0aD47: 0
----
This code:</p
* Deploys our smart contract to the blockchain
* Transfers £10 from account 1 to account 2
* Decodes that transaction and shows the output
* Show the balances of all the dummy accounts
The https://github.com/mneedham/ethereum-nursery/blob/master/eth_solc.js[full example is available] in my https://github.com/mneedham/ethereum-nursery[ethereum-nursery] GitHub repository. Thomas also has http://hypernephelist.com/2017/01/19/deploy-ethereum-smart-contract-using-client-signature.html[a follow up post] that shows how to deploy a contract on a remote node where client side signatures become necessary. | Learn how to code a Hello World example on the Ethereum blockchain using solc, the Solidity smart contract language, and the web3 client library. | null | [
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] | ethereum-hello-world-example-using-solc-and-web3 | https://markhneedham.com/blog/2017/12/28/ethereum-hello-world-example-using-solc-and-web3 |
false | 2017-12-10 07:55:43 | scikit-learn: Using GridSearch to tune the hyper-parameters of VotingClassifier | [
"python",
"scikit-learn",
"machine-learning",
"sklearn"
] | [
"Python"
] | In my last blog post I showed how to create a multi class classification ensemble using scikit-learn's +++<cite>+++http://scikit-learn.org/stable/modules/ensemble.html#voting-classifier[VotingClassifier]+++</cite>+++ and finished mentioning that I didn't know which classifiers should be part of the ensemble.
We need to get a better score with each of the classifiers in the ensemble otherwise they can be excluded.
We have a TF/IDF based classifier as well as well as the classifiers I wrote about in the last post. This is the code describing the classifiers:
[source,python]
----
import pandas as pd
from sklearn import linear_model
from sklearn.ensemble import VotingClassifier
from sklearn.feature_extraction.text import CountVectorizer, TfidfVectorizer
from sklearn.naive_bayes import MultinomialNB
from sklearn.pipeline import Pipeline
Y_COLUMN = "author"
TEXT_COLUMN = "text"
unigram_log_pipe = Pipeline([
('cv', CountVectorizer()),
('logreg', linear_model.LogisticRegression())
])
ngram_pipe = Pipeline([
('cv', CountVectorizer(ngram_range=(1, 2))),
('mnb', MultinomialNB())
])
tfidf_pipe = Pipeline([
('tfidf', TfidfVectorizer(min_df=3, max_features=None,
strip_accents='unicode', analyzer='word', token_pattern=r'\w{1,}',
ngram_range=(1, 3), use_idf=1, smooth_idf=1, sublinear_tf=1,
stop_words='english')),
('mnb', MultinomialNB())
])
classifiers = [
("ngram", ngram_pipe),
("unigram", unigram_log_pipe),
("tfidf", tfidf_pipe),
]
mixed_pipe = Pipeline([
("voting", VotingClassifier(classifiers, voting="soft"))
])
----
Now we're ready to work out which classifiers are needed. We'll use http://scikit-learn.org/stable/modules/generated/sklearn.model_selection.GridSearchCV.html[GridSearchCV] to do this.
[source,python]
----
from sklearn.model_selection import GridSearchCV
def combinations_on_off(num_classifiers):
return [[int(x) for x in list("{0:0b}".format(i).zfill(num_classifiers))]
for i in range(1, 2 ** num_classifiers)]
param_grid = dict(
voting__weights=combinations_on_off(len(classifiers))
)
train_df = pd.read_csv("train.csv", usecols=[Y_COLUMN, TEXT_COLUMN])
y = train_df[Y_COLUMN].copy()
X = pd.Series(train_df[TEXT_COLUMN])
grid_search = GridSearchCV(mixed_pipe, param_grid=param_grid, n_jobs=-1, verbose=10, scoring="neg_log_loss")
grid_search.fit(X, y)
cv_results = grid_search.cv_results_
for mean_score, params in zip(cv_results["mean_test_score"], cv_results["params"]):
print(params, mean_score)
print("Best score: %0.3f" % grid_search.best_score_)
print("Best parameters set:")
best_parameters = grid_search.best_estimator_.get_params()
for param_name in sorted(param_grid.keys()):
print("\t%s: %r" % (param_name, best_parameters[param_name]))
----
Let's run the grid scan and see what it comes up with:
[source,text]
----
{'voting__weights': [0, 0, 1]} -0.60533660756
{'voting__weights': [0, 1, 0]} -0.474562462086
{'voting__weights': [0, 1, 1]} -0.508363479586
{'voting__weights': [1, 0, 0]} -0.697231760084
{'voting__weights': [1, 0, 1]} -0.456599644003
{'voting__weights': [1, 1, 0]} -0.409406571361
{'voting__weights': [1, 1, 1]} -0.439084397238
Best score: -0.409
Best parameters set:
voting__weights: [1, 1, 0]
----
We can see from the output that we've tried every combination of each of the classifiers. The output suggests that we should only include the +++<cite>+++ngram_pipe+++</cite>+++ and +++<cite>+++unigram_log_pipe+++</cite>+++ classifiers. +++<cite>+++tfidf_pipe+++</cite>+++ should not be included - our log loss score is worse when it is added.
The https://gist.github.com/mneedham/3936d657b50b7c07cd3fe0c8d8c71496[code is on GitHub] if you want to see it all in one place | null | null | [
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] | scikit-learn-using-gridsearch-tune-hyper-parameters-votingclassifier | https://markhneedham.com/blog/2017/12/10/scikit-learn-using-gridsearch-tune-hyper-parameters-votingclassifier |
false | 2017-12-31 17:35:03 | Leaflet: Fit polyline in view | [
"javascript",
"leafletjs"
] | [
"Javascript"
] | I've been playing with the http://leafletjs.com/reference-1.2.0.html[Leaflet.js] library over the Christmas holidays to visualise running routes drawn onto the map using a Polyline and I wanted to zoom the map the right amount to see all the points.
== Pre requisites
We have the following HTML to define the +++<cite>+++div+++</cite>+++ that will contain the map.
[source,html]
----
<div id="container">
<div id="map" style="width: 100%; height: 100%">
</div>
</div>
----
We also need to import the following Javascript and CSS files:
[source,html]
----
<script src="http://cdn.leafletjs.com/leaflet-0.7/leaflet.js"></script>
<script type="text/javascript" src="https://rawgit.com/jieter/Leaflet.encoded/master/Polyline.encoded.js"></script>
<link rel="stylesheet" href="http://cdn.leafletjs.com/leaflet-0.7/leaflet.css"/>
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/leaflet.draw/0.4.2/leaflet.draw.css"/>
<script src="https://cdnjs.cloudflare.com/ajax/libs/leaflet.draw/0.4.2/leaflet.draw.js"></script>
----
== Polyline representing part of a route
The following code creates a polyline for a https://www.strava.com/segments/15311748[Strava segment] that I often run.
[source,javascript]
----
var map = L.map('map');
L.tileLayer('http://{s}.tile.openstreetmap.org/{z}/{x}/{y}.png', {maxZoom: 18,}).addTo(map);
var rawPoints = [
{ "latitude": 51.357874010145395, "longitude": -0.198045110923591 },
{ "latitude": 51.3573858289394, "longitude": -0.19787754933584795 },
{ "latitude": 51.35632791810057, "longitude": -0.19750254941422557 },
{ "latitude": 51.35553240304241, "longitude": -0.197232163894512 },
{ "latitude": 51.35496267279901, "longitude": -0.1970247338143316 },
{ "latitude": 51.35388700570004, "longitude": -0.19666483094752069 },
{ "latitude": 51.3533898352570, "longitude": -0.1964976504847828 },
{ "latitude": 51.35358452733139, "longitude": -0.19512563906602554 },
{ "latitude": 51.354762877995036, "longitude": -0.1945622934585907 },
{ "latitude": 51.355610110109986, "longitude": -0.19468697186046677 },
{ "latitude": 51.35680377680643, "longitude": -0.19395063336295112 },
{ "latitude": 51.356861596801075, "longitude": -0.1936180154828497 },
{ "latitude": 51.358487396611125, "longitude": -0.19349660642888197 }
];
var coordinates = rawPoints.map(rawPoint => new L.LatLng(rawPoint["latitude"], rawPoint["longitude"]))
let polyline = L.polyline(
coordinates,
{
color: 'blue',
weight: 3,
opacity: .7,
lineJoin: 'round'
}
);
polyline.addTo(map);
----
I wanted to centre the map around the polyline and initially wrote the following code to do this:
[source,javascript]
----
let lats = rawPoints.map(c => c.latitude).reduce((previous, current) => current += previous, 0.0);
let longs = rawPoints.map(c => c.longitude).reduce((previous, current) => current += previous, 0.0);
const position = [lats / rawPoints.length, longs / rawPoints.length];
map.setView(position, 17);
----
This works fine but the zoom factor was wrong when I drew longer polylines so I needed a better solution.
I should have http://leafletjs.com/reference-1.2.0.html#polyline[RTFM] because there's a much simpler way to do this. I actually found the explanation in https://github.com/Leaflet/Leaflet/issues/360[a GitHub issue from 2011]! We can replace the previous snippet with this single line of code:
[source,javascript]
----
map.fitBounds(polyline.getBounds());
----
And this is how it looks on the screen:
image::{{<siteurl>}}/uploads/2017/12/2017-12-31_17-30-25.png[2017 12 31 17 30 25,213] | null | null | [
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] | leaflet-fit-polyline-view | https://markhneedham.com/blog/2017/12/31/leaflet-fit-polyline-view |
false | 2017-12-01 22:09:17 | Neo4j: Cypher - Property values can only be of primitive types or arrays thereof. | [
"neo4j",
"cypher"
] | [
"neo4j"
] | I ran into an interesting https://neo4j.com/developer/cypher-query-language/[Cypher] error message earlier this week while trying to create an array property on a node which I thought I'd share.
This was the Cypher query I wrote:
[source,cypher]
----
CREATE (:Person {id: [1, "mark", 2.0]})
----
which results in this error:
[source,cypher]
----
Neo.ClientError.Statement.TypeError
Property values can only be of primitive types or arrays thereof.
----
We actually are storing an array of primitives but we have a mix of different types which isn't allowed. Let's try coercing all the values to strings:
[source,cypher]
----
CREATE (:Person {id: [value in [1, "mark", 2.0] | toString(value)]})
Added 1 label, created 1 node, set 1 property, completed after 4 ms.
----
Success! | null | null | [
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] | neo4j-cypher-property-values-can-primitive-types-arrays-thereof | https://markhneedham.com/blog/2017/12/01/neo4j-cypher-property-values-can-primitive-types-arrays-thereof |
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