Datasets:
add fields and file descriptions
Browse files
README.md
CHANGED
@@ -86,11 +86,30 @@ English
|
|
86 |
|
87 |
### Data Fields
|
88 |
|
89 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
90 |
|
91 |
### Data Splits
|
92 |
|
93 |
-
|
|
|
|
|
|
|
|
|
94 |
|
95 |
## Dataset Creation
|
96 |
|
|
|
86 |
|
87 |
### Data Fields
|
88 |
|
89 |
+
The CSV files contain the following fields:
|
90 |
+
|
91 |
+
| Field | Description |
|
92 |
+
| ----- | ----------- |
|
93 |
+
| `index` | (int) Index of the article in the current dataset |
|
94 |
+
| `pmid` | (int) PubMed ID |
|
95 |
+
| `doi` | (str) Digital Object Identifier |
|
96 |
+
| `year` | (int) Year of publication (yyyy format)|
|
97 |
+
| `journal_title` | (str) Title of the journal |
|
98 |
+
| `journal_iso_abbreviation` | (str) ISO abbreviation of the journal |
|
99 |
+
| `title` | (str) Title of the article |
|
100 |
+
| `abstract` | (str) Abstract of the article |
|
101 |
+
| `category` | (enum) Category of the article, either "CognitiveTask" or "CognitiveConstruct" |
|
102 |
+
| `label` | (enum) Label of the article, which refers to the class labels in the `ontologies/efo.owl` ontology |
|
103 |
+
| `original_index` | (int) Index of the article in the full dataset |
|
104 |
+
|
105 |
|
106 |
### Data Splits
|
107 |
|
108 |
+
| Dataset | Description |
|
109 |
+
| ------- | ----------- |
|
110 |
+
| `pubmed/abstracts.csv.gz` | Full dataset |
|
111 |
+
| `pubmed/abstracts20pct.csv.gz` | 20% of the dataset (stratified random sample by `label`) |
|
112 |
+
| `gpt3/abstracts_gp3ada.nc` | GPT-3 embeddings of the entire dataset in XArray/CDF4 format, indexed by `doi` |
|
113 |
|
114 |
## Dataset Creation
|
115 |
|