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README.md

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+---
+language: rna
+tags:
+  - Biology
+  - RNA
+license:
+  - agpl-3.0
+size_categories:
+  - 100K<n<1M
+source_datasets:
+  - multimolecule/bprna
+  - multimolecule/pdb
+task_categories:
+  - text-generation
+  - fill-mask
+task_ids:
+  - language-modeling
+  - masked-language-modeling
+pretty_name: bpRNA-spot
+library_name: multimolecule
+---
+
+# bpRNA-spot
+
+bpRNA-spot is a database of single molecule secondary structures annotated using bpRNA.
+
+bpRNA-spot is a subset of [bpRNA-1m](../bprna).
+It applies [CD-HIT (CD-HIT-EST)](https://sites.google.com/view/cd-hit) to remove sequences with more than 80% sequence similarity from bpRNA-1m.
+It further randomly splits the remaining sequences into training, validation, and test sets with a ratio of appr
+
+## Disclaimer
+
+This is an UNOFFICIAL release of the bpRNA-spot by Jaswinder Singh, Jack Hanson, Kuldip Paliwal and Yaoqi Zhou.
+
+**The team releasing bpRNA-spot did not write this dataset card for this dataset so this dataset card has been written by the MultiMolecule team.**
+
+## Dataset Description
+
+- **Homepage**: https://multimolecule.danling.org/datasets/bprna-spot
+- **datasets**: https://huggingface.co/datasets/multimolecule/bprna-spot
+- **Point of Contact**: [Kuldip Paliwal](mailto:[email protected]) and [Yaoqi Zhou](mailto:[email protected])
+
+## Related Datasets
+
+- [bpRNA-1m](https://huggingface.co/datasets/multimolecule/bprna): A database of single molecule secondary structures annotated using bpRNA.
+- [bpRNA-new](https://huggingface.co/datasets/multimolecule/bprna-new): A dataset of newly discovered RNA families from Rfam 14.2, designed for cross-family validation to assess generalization capability.
+
+## License
+
+This dataset is licensed under the [AGPL-3.0 License](https://www.gnu.org/licenses/agpl-3.0.html).
+
+```spdx
+SPDX-License-Identifier: AGPL-3.0-or-later
+```
+
+## Citation
+
+```bibtex
+@article{singh2019rna,
+  author    = {Singh, Jaswinder and Hanson, Jack and Paliwal, Kuldip and Zhou, Yaoqi},
+  journal   = {Nature Communications},
+  month     = nov,
+  number    = 1,
+  pages     = {5407},
+  publisher = {Springer Science and Business Media LLC},
+  title     = {{RNA} secondary structure prediction using an ensemble of two-dimensional deep neural networks and transfer learning},
+  volume    = 10,
+  year      = 2019
+}
+
+@article{darty2009varna,
+  author    = {Darty, K{\'e}vin and Denise, Alain and Ponty, Yann},
+  journal   = {Bioinformatics},
+  month     = aug,
+  number    = 15,
+  pages     = {1974--1975},
+  publisher = {Oxford University Press (OUP)},
+  title     = {{VARNA}: Interactive drawing and editing of the {RNA} secondary structure},
+  volume    = 25,
+  year      = 2009
+}
+
+@article{berman2000protein,
+  author    = {Berman, H M and Westbrook, J and Feng, Z and Gilliland, G and Bhat, T N and Weissig, H and Shindyalov, I N and Bourne, P E},
+  journal   = {Nucleic Acids Research},
+  month     = jan,
+  number    = 1,
+  pages     = {235--242},
+  publisher = {Oxford University Press (OUP)},
+  title     = {The Protein Data Bank},
+  volume    = 28,
+  year      = 2000
+}
+```

test.parquet

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train.parquet

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val.parquet

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