Create README.md
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README.md
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---
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license: mit
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tags:
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- biology
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---
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[[FFN paper]](https://www.nature.com/articles/s41592-018-0049-4), [[data from the paper]](https://storage.googleapis.com/j0126-nature-methods-data/GgwKmcKgrcoNxJccKuGIzRnQqfit9hnfK1ctZzNbnuU/README.txt)
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We downloaded and processed the data into formats that are easier to share.
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- Ground truth
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- train: `j0126-train-34vol.zip`, 34 densely labeled subvolumes
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- validaiton: `valid_12_skeletons.h5`, manually traced skeletons for 12 neurons
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- test: `test_50_skeletons.h5`, manually traced skeletons for 50 neurons
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- FFN result (due to the file size constraint, we split the zip into two files)
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```
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# first, merge the two parts together
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zip -s 0 ffn_seg_part.zip --out ffn_seg.zip
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rm ffn_seg_part*
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# then, unzip the segmentation in tiles of the size 128x2048x2048 (saved in h5)
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unzip ffn_seg.zip
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```
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