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1
AlbericDeLajarte commited on
Commit
e928194
·
1 Parent(s): 8686a20

Cleaned PDB data

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This view is limited to 50 files because it contains too many changes.   See raw diff
Files changed (50) hide show
  1. README.md +5 -5
  2. data.json +0 -0
  3. info.json +2 -2
  4. source/bpSEQ_files_pdbee/RNApdbee-1DUH-2023-11-25T05_11_57.zip +3 -0
  5. source/bpSEQ_files_pdbee/RNApdbee-1EHZ-2023-11-25T04_37_35.zip +3 -0
  6. source/bpSEQ_files_pdbee/RNApdbee-1EVV-2023-11-25T04_37_56.zip +3 -0
  7. source/bpSEQ_files_pdbee/RNApdbee-1F1T-2023-11-25T05_13_36.zip +3 -0
  8. source/bpSEQ_files_pdbee/RNApdbee-1G2J-2023-11-25T05_47_52.zip +3 -0
  9. source/bpSEQ_files_pdbee/RNApdbee-1I9V-2023-11-25T04_38_16.zip +3 -0
  10. source/bpSEQ_files_pdbee/RNApdbee-1KFO-2023-11-25T05_35_08.zip +3 -0
  11. source/bpSEQ_files_pdbee/RNApdbee-1KH6-2023-11-25T04_57_36.zip +3 -0
  12. source/bpSEQ_files_pdbee/RNApdbee-1L2X-2023-11-25T05_21_52.zip +3 -0
  13. source/bpSEQ_files_pdbee/RNApdbee-1L3D-2023-11-25T05_22_11.zip +3 -0
  14. source/bpSEQ_files_pdbee/RNApdbee-1MDG-2023-11-25T05_50_04.zip +3 -0
  15. source/bpSEQ_files_pdbee/RNApdbee-1MSY-2023-11-25T05_22_50.zip +3 -0
  16. source/bpSEQ_files_pdbee/RNApdbee-1OSU-2023-11-25T05_50_23.zip +3 -0
  17. source/bpSEQ_files_pdbee/RNApdbee-1P79-2023-11-25T05_50_42.zip +3 -0
  18. source/bpSEQ_files_pdbee/RNApdbee-1Q9A-2023-11-25T05_23_10.zip +3 -0
  19. source/bpSEQ_files_pdbee/RNApdbee-1RXA-2023-11-25T05_48_11.zip +3 -0
  20. source/bpSEQ_files_pdbee/RNApdbee-1U9S-2023-11-25T04_06_50.zip +3 -0
  21. source/bpSEQ_files_pdbee/RNApdbee-1XJR-2023-11-25T05_11_37.zip +3 -0
  22. source/bpSEQ_files_pdbee/RNApdbee-1Y26-2023-11-25T04_39_18.zip +3 -0
  23. source/bpSEQ_files_pdbee/RNApdbee-1Y27-2023-11-25T04_43_42.zip +3 -0
  24. source/bpSEQ_files_pdbee/RNApdbee-1Z43-2023-11-25T04_15_45.zip +3 -0
  25. source/bpSEQ_files_pdbee/RNApdbee-255D-2023-11-25T05_43_24.zip +3 -0
  26. source/bpSEQ_files_pdbee/RNApdbee-283D-2023-11-25T05_43_44.zip +3 -0
  27. source/bpSEQ_files_pdbee/RNApdbee-2A43-2023-11-25T05_32_14.zip +3 -0
  28. source/bpSEQ_files_pdbee/RNApdbee-2B57-2023-11-25T04_54_54.zip +3 -0
  29. source/bpSEQ_files_pdbee/RNApdbee-2EES-2023-11-25T04_45_24.zip +3 -0
  30. source/bpSEQ_files_pdbee/RNApdbee-2EET-2023-11-25T04_45_44.zip +3 -0
  31. source/bpSEQ_files_pdbee/RNApdbee-2EEU-2023-11-25T04_46_04.zip +3 -0
  32. source/bpSEQ_files_pdbee/RNApdbee-2EEV-2023-11-25T04_46_24.zip +3 -0
  33. source/bpSEQ_files_pdbee/RNApdbee-2EEW-2023-11-25T04_46_45.zip +3 -0
  34. source/bpSEQ_files_pdbee/RNApdbee-2G9C-2023-11-25T04_47_05.zip +3 -0
  35. source/bpSEQ_files_pdbee/RNApdbee-2GIS-2023-11-25T04_19_13.zip +3 -0
  36. source/bpSEQ_files_pdbee/RNApdbee-2HOJ-2023-11-25T04_32_06.zip +3 -0
  37. source/bpSEQ_files_pdbee/RNApdbee-2HOL-2023-11-25T04_32_26.zip +3 -0
  38. source/bpSEQ_files_pdbee/RNApdbee-2HOM-2023-11-25T04_32_46.zip +3 -0
  39. source/bpSEQ_files_pdbee/RNApdbee-2JJA-2023-11-25T05_48_30.zip +3 -0
  40. source/bpSEQ_files_pdbee/RNApdbee-2Q1R-2023-11-25T05_44_03.zip +3 -0
  41. source/bpSEQ_files_pdbee/RNApdbee-2QBZ-2023-11-25T04_07_12.zip +3 -0
  42. source/bpSEQ_files_pdbee/RNApdbee-2WNA-2023-11-25T05_51_01.zip +3 -0
  43. source/bpSEQ_files_pdbee/RNApdbee-2XC6-2023-11-25T05_48_48.zip +3 -0
  44. source/bpSEQ_files_pdbee/RNApdbee-2XNW-2023-11-25T04_47_26.zip +3 -0
  45. source/bpSEQ_files_pdbee/RNApdbee-2XNZ-2023-11-25T04_47_46.zip +3 -0
  46. source/bpSEQ_files_pdbee/RNApdbee-2XO0-2023-11-25T04_48_06.zip +3 -0
  47. source/bpSEQ_files_pdbee/RNApdbee-2XO1-2023-11-25T04_48_27.zip +3 -0
  48. source/bpSEQ_files_pdbee/RNApdbee-2YDH-2023-11-25T04_19_34.zip +3 -0
  49. source/bpSEQ_files_pdbee/RNApdbee-2YGH-2023-11-25T04_18_10.zip +3 -0
  50. source/bpSEQ_files_pdbee/RNApdbee-2ZY6-2023-11-25T05_13_17.zip +3 -0
README.md CHANGED
@@ -11,7 +11,7 @@ pretty_name: PDB
11
  ---
12
 
13
  # PDB
14
- upload_date: 2023-11-24 12:33:34
15
  user: alberic
16
  source: `bpSEQ_files_pdbee` (BPSEQ files format)
17
 
@@ -19,9 +19,9 @@ pretty_name: PDB
19
  - structure (Read from source.)
20
 
21
  Filtering report:
22
- Over a total of 702 datapoints, there are:
23
- - 353 valid datapoints
24
  - 0 invalid datapoints (ex: sequence with non-regular characters)
25
  - 0 datapoints with the same reference
26
- - 302 duplicate sequences with the same structure / dms
27
- - 47 duplicate sequences with different structure / dms
 
11
  ---
12
 
13
  # PDB
14
+ upload_date: 2023-12-05 14:53:23
15
  user: alberic
16
  source: `bpSEQ_files_pdbee` (BPSEQ files format)
17
 
 
19
  - structure (Read from source.)
20
 
21
  Filtering report:
22
+ Over a total of 333 datapoints, there are:
23
+ - 171 valid datapoints
24
  - 0 invalid datapoints (ex: sequence with non-regular characters)
25
  - 0 datapoints with the same reference
26
+ - 137 duplicate sequences with the same structure / dms
27
+ - 25 duplicate sequences with different structure / dms
data.json CHANGED
The diff for this file is too large to render. See raw diff
 
info.json CHANGED
@@ -1,9 +1,9 @@
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  {
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  "name": "PDB",
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- "upload_date": "2023-11-24 12:33:34",
4
  "user": "alberic",
5
  "source": "`bpSEQ_files_pdbee` (BPSEQ files format)",
6
  "structure": "source",
7
  "about structure": "Read from source.",
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- "filtering_report": "Over a total of 702 datapoints, there are:\n - 353 valid datapoints\n - 0 invalid datapoints (ex: sequence with non-regular characters)\n - 0 datapoints with the same reference\n - 302 duplicate sequences with the same structure / dms\n - 47 duplicate sequences with different structure / dms"
9
  }
 
1
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  "name": "PDB",
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  "user": "alberic",
5
  "source": "`bpSEQ_files_pdbee` (BPSEQ files format)",
6
  "structure": "source",
7
  "about structure": "Read from source.",
8
+ "filtering_report": "Over a total of 333 datapoints, there are:\n - 171 valid datapoints\n - 0 invalid datapoints (ex: sequence with non-regular characters)\n - 0 datapoints with the same reference\n - 137 duplicate sequences with the same structure / dms\n - 25 duplicate sequences with different structure / dms"
9
  }
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